Multiple sequence alignment - TraesCS4A01G234100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G234100 chr4A 100.000 3306 0 0 1 3306 543331002 543334307 0.000000e+00 6106.0
1 TraesCS4A01G234100 chr4D 92.158 2002 81 23 294 2241 53865095 53863116 0.000000e+00 2758.0
2 TraesCS4A01G234100 chr4D 91.928 223 17 1 2427 2648 53862913 53862691 8.910000e-81 311.0
3 TraesCS4A01G234100 chr4D 89.394 198 15 1 1 198 53866395 53866204 9.160000e-61 244.0
4 TraesCS4A01G234100 chr4D 83.626 171 10 10 2789 2955 53844607 53844451 9.560000e-31 145.0
5 TraesCS4A01G234100 chr4B 89.643 2211 129 42 154 2295 78820480 78818301 0.000000e+00 2723.0
6 TraesCS4A01G234100 chr4B 89.153 295 28 4 2427 2719 78817209 78816917 6.740000e-97 364.0
7 TraesCS4A01G234100 chr4B 80.292 274 14 12 2710 2955 78815640 78815379 1.580000e-38 171.0
8 TraesCS4A01G234100 chr4B 91.860 86 6 1 2344 2429 546424021 546423937 5.800000e-23 119.0
9 TraesCS4A01G234100 chr4B 90.909 88 7 1 2340 2426 653746110 653746023 2.080000e-22 117.0
10 TraesCS4A01G234100 chr4B 93.421 76 4 1 2224 2299 78817332 78817258 9.700000e-21 111.0
11 TraesCS4A01G234100 chr4B 94.737 38 2 0 230 267 564078510 564078473 3.560000e-05 60.2
12 TraesCS4A01G234100 chr7A 89.474 152 14 2 3110 3259 11356031 11355880 1.210000e-44 191.0
13 TraesCS4A01G234100 chr7A 85.315 143 16 2 2975 3112 11356278 11356136 3.440000e-30 143.0
14 TraesCS4A01G234100 chr7A 82.857 140 19 4 3110 3245 979626 979488 1.610000e-23 121.0
15 TraesCS4A01G234100 chr6B 87.770 139 16 1 3110 3247 444540914 444540776 9.490000e-36 161.0
16 TraesCS4A01G234100 chr6B 87.069 116 11 2 3001 3112 561042885 561042770 9.630000e-26 128.0
17 TraesCS4A01G234100 chr6B 90.217 92 8 1 2335 2426 216509848 216509758 5.800000e-23 119.0
18 TraesCS4A01G234100 chr6B 80.795 151 25 2 3112 3260 18332750 18332898 7.500000e-22 115.0
19 TraesCS4A01G234100 chr7B 88.696 115 11 1 2998 3110 122421587 122421701 4.450000e-29 139.0
20 TraesCS4A01G234100 chr5D 94.253 87 5 0 2343 2429 373835130 373835044 2.070000e-27 134.0
21 TraesCS4A01G234100 chr5D 81.879 149 25 2 3112 3260 526869615 526869761 1.250000e-24 124.0
22 TraesCS4A01G234100 chr2D 84.615 130 18 1 2985 3112 21657604 21657733 9.630000e-26 128.0
23 TraesCS4A01G234100 chr2D 85.366 123 16 1 2985 3105 21674018 21674140 3.460000e-25 126.0
24 TraesCS4A01G234100 chr2D 85.965 114 14 1 3001 3112 45540924 45540811 1.610000e-23 121.0
25 TraesCS4A01G234100 chr2D 84.746 118 15 2 2998 3112 21631874 21631991 7.500000e-22 115.0
26 TraesCS4A01G234100 chr2D 89.247 93 8 2 2335 2426 85925901 85925992 7.500000e-22 115.0
27 TraesCS4A01G234100 chr2D 79.310 116 13 7 3145 3260 536905111 536905007 1.650000e-08 71.3
28 TraesCS4A01G234100 chr6D 91.954 87 7 0 2343 2429 249956965 249956879 4.480000e-24 122.0
29 TraesCS4A01G234100 chr6D 87.879 99 12 0 2333 2431 387885981 387886079 2.080000e-22 117.0
30 TraesCS4A01G234100 chr6D 82.222 135 19 2 3112 3245 373392873 373392743 9.700000e-21 111.0
31 TraesCS4A01G234100 chr6D 100.000 31 0 0 102 132 345574087 345574117 1.280000e-04 58.4
32 TraesCS4A01G234100 chr3B 88.000 100 11 1 2331 2429 723452956 723452857 2.080000e-22 117.0
33 TraesCS4A01G234100 chr1D 90.805 87 6 1 2343 2429 220878754 220878670 7.500000e-22 115.0
34 TraesCS4A01G234100 chr7D 84.348 115 14 3 2998 3110 498266281 498266393 3.490000e-20 110.0
35 TraesCS4A01G234100 chr6A 83.333 114 17 1 3001 3112 98889965 98889852 1.620000e-18 104.0
36 TraesCS4A01G234100 chr2B 76.510 149 24 4 3112 3260 681506259 681506122 1.650000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G234100 chr4A 543331002 543334307 3305 False 6106.000000 6106 100.00000 1 3306 1 chr4A.!!$F1 3305
1 TraesCS4A01G234100 chr4D 53862691 53866395 3704 True 1104.333333 2758 91.16000 1 2648 3 chr4D.!!$R2 2647
2 TraesCS4A01G234100 chr4B 78815379 78820480 5101 True 842.250000 2723 88.12725 154 2955 4 chr4B.!!$R4 2801

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
260 1303 0.030235 CGCCAAGGACGATGACGATA 59.970 55.0 0.00 0.00 42.66 2.92 F
527 1628 0.035915 TGGCCTGCTTACATTGCGTA 60.036 50.0 3.32 0.00 0.00 4.42 F
528 1629 0.377203 GGCCTGCTTACATTGCGTAC 59.623 55.0 0.00 0.00 0.00 3.67 F
564 1666 0.388659 AGATGGATCTGCTCGACAGC 59.611 55.0 9.34 0.34 46.76 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1497 2646 0.524816 CGATGACCGTACCTGAACCG 60.525 60.000 0.00 0.0 0.00 4.44 R
1708 2886 1.072331 GGTCTGGTCCTTGAAGAAGCA 59.928 52.381 0.00 0.0 0.00 3.91 R
2214 3392 3.733337 AGCGGTAGGATCATGAATTCAC 58.267 45.455 11.07 0.0 0.00 3.18 R
2551 4900 0.666913 ATGATCTGCTCAAATGCGCC 59.333 50.000 4.18 0.0 37.44 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 2.152016 GTTGGCCACTTACCTCTTCAC 58.848 52.381 3.88 0.00 0.00 3.18
91 92 2.358267 ACTTACCTCTTCACGCCTATCG 59.642 50.000 0.00 0.00 45.38 2.92
96 97 0.032130 TCTTCACGCCTATCGCCATC 59.968 55.000 0.00 0.00 43.23 3.51
120 121 3.393089 CCTGGCAGTAGGCTATAACAG 57.607 52.381 14.43 4.69 44.01 3.16
130 131 1.766496 GGCTATAACAGGCTACCACCA 59.234 52.381 0.00 0.00 46.26 4.17
147 148 0.175073 CCACGGTCCTTGTAGGTAGC 59.825 60.000 0.00 0.00 36.53 3.58
148 149 0.175073 CACGGTCCTTGTAGGTAGCC 59.825 60.000 0.00 0.00 36.53 3.93
149 150 0.251922 ACGGTCCTTGTAGGTAGCCA 60.252 55.000 0.00 0.00 36.53 4.75
150 151 0.899720 CGGTCCTTGTAGGTAGCCAA 59.100 55.000 0.00 0.00 36.53 4.52
151 152 1.405121 CGGTCCTTGTAGGTAGCCAAC 60.405 57.143 0.00 0.00 36.53 3.77
152 153 1.907255 GGTCCTTGTAGGTAGCCAACT 59.093 52.381 0.00 0.00 36.53 3.16
172 173 2.779755 ATTCATGTAAGTCGGTGCCA 57.220 45.000 0.00 0.00 0.00 4.92
215 1258 1.278238 GTTTCCTATCGCCAGTGACG 58.722 55.000 0.00 0.00 0.00 4.35
222 1265 2.188912 TCGCCAGTGACGATGATGA 58.811 52.632 0.00 0.00 33.96 2.92
224 1267 1.953686 TCGCCAGTGACGATGATGATA 59.046 47.619 0.00 0.00 33.96 2.15
225 1268 2.054363 CGCCAGTGACGATGATGATAC 58.946 52.381 0.00 0.00 0.00 2.24
226 1269 2.543653 CGCCAGTGACGATGATGATACA 60.544 50.000 0.00 0.00 0.00 2.29
227 1270 3.657634 GCCAGTGACGATGATGATACAT 58.342 45.455 0.00 0.00 0.00 2.29
228 1271 4.615912 CGCCAGTGACGATGATGATACATA 60.616 45.833 0.00 0.00 0.00 2.29
229 1272 4.861462 GCCAGTGACGATGATGATACATAG 59.139 45.833 0.00 0.00 0.00 2.23
230 1273 5.565637 GCCAGTGACGATGATGATACATAGT 60.566 44.000 0.00 0.00 38.42 2.12
231 1274 5.860716 CCAGTGACGATGATGATACATAGTG 59.139 44.000 0.00 0.00 36.55 2.74
232 1275 5.860716 CAGTGACGATGATGATACATAGTGG 59.139 44.000 0.00 0.00 36.55 4.00
233 1276 5.536538 AGTGACGATGATGATACATAGTGGT 59.463 40.000 0.00 0.00 36.55 4.16
234 1277 6.715264 AGTGACGATGATGATACATAGTGGTA 59.285 38.462 0.00 0.00 36.55 3.25
235 1278 6.802348 GTGACGATGATGATACATAGTGGTAC 59.198 42.308 0.00 0.00 36.55 3.34
236 1279 6.072119 TGACGATGATGATACATAGTGGTACC 60.072 42.308 4.43 4.43 36.55 3.34
237 1280 5.185249 ACGATGATGATACATAGTGGTACCC 59.815 44.000 10.07 0.32 35.49 3.69
238 1281 5.419155 CGATGATGATACATAGTGGTACCCT 59.581 44.000 10.07 8.75 0.00 4.34
239 1282 6.602009 CGATGATGATACATAGTGGTACCCTA 59.398 42.308 10.07 10.76 0.00 3.53
240 1283 7.415318 CGATGATGATACATAGTGGTACCCTAC 60.415 44.444 10.07 1.23 0.00 3.18
249 1292 1.686800 GGTACCCTACCGCCAAGGA 60.687 63.158 0.00 0.00 45.00 3.36
250 1293 1.519246 GTACCCTACCGCCAAGGAC 59.481 63.158 0.00 0.00 45.00 3.85
251 1294 2.053865 TACCCTACCGCCAAGGACG 61.054 63.158 0.00 0.00 45.00 4.79
252 1295 2.497792 TACCCTACCGCCAAGGACGA 62.498 60.000 0.00 0.00 45.00 4.20
253 1296 2.432300 CCCTACCGCCAAGGACGAT 61.432 63.158 0.00 0.00 45.00 3.73
254 1297 1.227263 CCTACCGCCAAGGACGATG 60.227 63.158 0.00 0.00 45.00 3.84
255 1298 1.672854 CCTACCGCCAAGGACGATGA 61.673 60.000 0.00 0.00 45.00 2.92
256 1299 0.527817 CTACCGCCAAGGACGATGAC 60.528 60.000 0.00 0.00 45.00 3.06
257 1300 2.274232 TACCGCCAAGGACGATGACG 62.274 60.000 0.00 0.00 45.00 4.35
258 1301 2.180769 CGCCAAGGACGATGACGA 59.819 61.111 0.00 0.00 42.66 4.20
259 1302 1.226974 CGCCAAGGACGATGACGAT 60.227 57.895 0.00 0.00 42.66 3.73
260 1303 0.030235 CGCCAAGGACGATGACGATA 59.970 55.000 0.00 0.00 42.66 2.92
261 1304 1.772182 GCCAAGGACGATGACGATAG 58.228 55.000 0.00 0.00 42.66 2.08
262 1305 1.772182 CCAAGGACGATGACGATAGC 58.228 55.000 0.00 0.00 42.66 2.97
368 1464 6.454981 CGCTATCGACATGTGTGTGAAATTAA 60.455 38.462 1.15 0.00 39.09 1.40
379 1475 3.003897 GTGTGAAATTAAAGGACGGTGCA 59.996 43.478 1.61 0.00 0.00 4.57
396 1492 1.848388 TGCAGGATGATGAATGGACCT 59.152 47.619 0.00 0.00 39.69 3.85
411 1507 1.153086 ACCTGGCGAGGCATTGATC 60.153 57.895 15.66 0.00 44.33 2.92
485 1585 3.129502 CTGCCCTGGCGTCATGTG 61.130 66.667 3.32 0.00 45.51 3.21
527 1628 0.035915 TGGCCTGCTTACATTGCGTA 60.036 50.000 3.32 0.00 0.00 4.42
528 1629 0.377203 GGCCTGCTTACATTGCGTAC 59.623 55.000 0.00 0.00 0.00 3.67
563 1665 2.137129 CAGATGGATCTGCTCGACAG 57.863 55.000 3.72 8.24 46.63 3.51
564 1666 0.388659 AGATGGATCTGCTCGACAGC 59.611 55.000 9.34 0.34 46.76 4.40
565 1667 4.166662 CAGATGGATCTGCTCGACAGCT 62.167 54.545 3.72 1.67 46.63 4.24
566 1668 5.936316 CAGATGGATCTGCTCGACAGCTC 62.936 56.522 3.72 9.22 46.63 4.09
589 1691 9.757227 GCTCAATCATACTAACATTCTAGAGTT 57.243 33.333 3.20 3.20 0.00 3.01
654 1757 2.659757 TCGTTCGTGAAATTACAGCTCG 59.340 45.455 0.00 0.00 0.00 5.03
668 1771 4.424430 CTCGTTTGAACCGCGCCG 62.424 66.667 0.00 0.00 0.00 6.46
739 1847 1.993370 CGGCAGAAAAGGTAGAACTCG 59.007 52.381 0.00 0.00 0.00 4.18
745 1853 5.564259 GCAGAAAAGGTAGAACTCGAGTGTA 60.564 44.000 20.85 11.27 0.00 2.90
746 1854 6.622549 CAGAAAAGGTAGAACTCGAGTGTAT 58.377 40.000 20.85 10.63 0.00 2.29
747 1855 7.091443 CAGAAAAGGTAGAACTCGAGTGTATT 58.909 38.462 20.85 2.28 0.00 1.89
768 1878 9.710900 TGTATTGGATGTGAATCATAGTATCAC 57.289 33.333 0.00 0.00 42.90 3.06
773 1883 7.148641 GGATGTGAATCATAGTATCACTTCGT 58.851 38.462 12.10 0.00 43.59 3.85
774 1884 7.115520 GGATGTGAATCATAGTATCACTTCGTG 59.884 40.741 12.10 0.00 43.59 4.35
775 1885 5.748630 TGTGAATCATAGTATCACTTCGTGC 59.251 40.000 6.68 0.00 42.99 5.34
776 1886 5.748630 GTGAATCATAGTATCACTTCGTGCA 59.251 40.000 0.00 0.00 40.18 4.57
777 1887 6.422100 GTGAATCATAGTATCACTTCGTGCAT 59.578 38.462 0.00 0.00 40.18 3.96
868 2005 4.235762 ACCAGGACAAGCGCACGT 62.236 61.111 11.47 5.62 0.00 4.49
958 2098 1.074405 GACCCTTTTTAACCCCCTCGT 59.926 52.381 0.00 0.00 0.00 4.18
1160 2309 3.213402 GACCTCTCCCCTCTCGCG 61.213 72.222 0.00 0.00 0.00 5.87
1493 2642 3.003763 AAGTGGCCCGAGGACCTC 61.004 66.667 11.87 11.87 0.00 3.85
1516 2665 0.524816 CGGTTCAGGTACGGTCATCG 60.525 60.000 0.00 0.00 45.88 3.84
1537 2686 3.002791 GACTCAATCGATTCTGCAACCA 58.997 45.455 7.92 0.00 0.00 3.67
1565 2735 9.334947 GAGAGAAATGGTTCATATGATTCAGAA 57.665 33.333 6.17 0.00 36.09 3.02
1566 2736 9.863650 AGAGAAATGGTTCATATGATTCAGAAT 57.136 29.630 6.17 0.00 36.09 2.40
1570 2740 9.740239 AAATGGTTCATATGATTCAGAATTTCG 57.260 29.630 6.17 0.00 0.00 3.46
1571 2741 7.263100 TGGTTCATATGATTCAGAATTTCGG 57.737 36.000 6.17 0.00 0.00 4.30
1572 2742 7.053498 TGGTTCATATGATTCAGAATTTCGGA 58.947 34.615 6.17 0.00 0.00 4.55
1573 2743 7.720957 TGGTTCATATGATTCAGAATTTCGGAT 59.279 33.333 6.17 0.00 0.00 4.18
1596 2774 7.325338 GGATGTTAATCTCGATGCAAATTGATG 59.675 37.037 0.00 0.00 32.95 3.07
1752 2930 1.496060 TCATCCGGCTGAACCACTAT 58.504 50.000 5.29 0.00 39.03 2.12
1764 2942 4.609018 CACTATCCGCCCTGCCCG 62.609 72.222 0.00 0.00 0.00 6.13
2194 3372 2.872038 GCACACTTCAGAAAGGACCGAT 60.872 50.000 0.00 0.00 36.78 4.18
2198 3376 3.681897 CACTTCAGAAAGGACCGATCTTG 59.318 47.826 0.00 0.00 36.78 3.02
2211 3389 3.455910 ACCGATCTTGAATGAAGGATCCA 59.544 43.478 15.82 0.00 31.85 3.41
2214 3392 4.388165 CGATCTTGAATGAAGGATCCATCG 59.612 45.833 15.82 11.54 31.18 3.84
2252 4601 1.693627 GCTCTCCTCGGTGATCCTAA 58.306 55.000 0.00 0.00 0.00 2.69
2311 4660 9.804758 AAATAAGTAATTGTGTCGGTTCAAAAA 57.195 25.926 0.00 0.00 0.00 1.94
2350 4699 7.883217 TGTCCGTATTAATAATCACTCTCTCC 58.117 38.462 0.00 0.00 0.00 3.71
2351 4700 7.022384 GTCCGTATTAATAATCACTCTCTCCG 58.978 42.308 0.00 0.00 0.00 4.63
2354 4703 7.022384 CGTATTAATAATCACTCTCTCCGTCC 58.978 42.308 0.00 0.00 0.00 4.79
2357 4706 2.166907 AATCACTCTCTCCGTCCCAT 57.833 50.000 0.00 0.00 0.00 4.00
2362 4711 4.999310 TCACTCTCTCCGTCCCATAATAT 58.001 43.478 0.00 0.00 0.00 1.28
2363 4712 6.135819 TCACTCTCTCCGTCCCATAATATA 57.864 41.667 0.00 0.00 0.00 0.86
2364 4713 6.549242 TCACTCTCTCCGTCCCATAATATAA 58.451 40.000 0.00 0.00 0.00 0.98
2366 4715 7.507956 TCACTCTCTCCGTCCCATAATATAAAA 59.492 37.037 0.00 0.00 0.00 1.52
2367 4716 7.815068 CACTCTCTCCGTCCCATAATATAAAAG 59.185 40.741 0.00 0.00 0.00 2.27
2368 4717 6.698380 TCTCTCCGTCCCATAATATAAAAGC 58.302 40.000 0.00 0.00 0.00 3.51
2369 4718 5.475719 TCTCCGTCCCATAATATAAAAGCG 58.524 41.667 0.00 0.00 0.00 4.68
2371 4720 5.613329 TCCGTCCCATAATATAAAAGCGTT 58.387 37.500 0.00 0.00 0.00 4.84
2372 4721 6.056884 TCCGTCCCATAATATAAAAGCGTTT 58.943 36.000 2.53 2.53 0.00 3.60
2376 4725 7.911205 CGTCCCATAATATAAAAGCGTTTTTGA 59.089 33.333 18.77 8.06 37.12 2.69
2377 4726 9.016623 GTCCCATAATATAAAAGCGTTTTTGAC 57.983 33.333 18.77 10.56 37.12 3.18
2378 4727 8.740906 TCCCATAATATAAAAGCGTTTTTGACA 58.259 29.630 18.77 5.33 37.12 3.58
2380 4729 9.567848 CCATAATATAAAAGCGTTTTTGACACT 57.432 29.630 18.77 3.85 37.12 3.55
2391 4740 8.416485 AGCGTTTTTGACACTAGTATAATACC 57.584 34.615 0.00 0.00 0.00 2.73
2392 4741 8.036575 AGCGTTTTTGACACTAGTATAATACCA 58.963 33.333 0.00 0.00 0.00 3.25
2393 4742 8.658609 GCGTTTTTGACACTAGTATAATACCAA 58.341 33.333 0.00 0.00 0.00 3.67
2399 4748 8.188531 TGACACTAGTATAATACCAAAAACGC 57.811 34.615 0.00 0.00 0.00 4.84
2400 4749 8.036575 TGACACTAGTATAATACCAAAAACGCT 58.963 33.333 0.00 0.00 0.00 5.07
2401 4750 8.416485 ACACTAGTATAATACCAAAAACGCTC 57.584 34.615 0.00 0.00 0.00 5.03
2402 4751 8.255905 ACACTAGTATAATACCAAAAACGCTCT 58.744 33.333 0.00 0.00 0.00 4.09
2403 4752 9.095065 CACTAGTATAATACCAAAAACGCTCTT 57.905 33.333 0.00 0.00 0.00 2.85
2413 4762 7.272037 ACCAAAAACGCTCTTATATTATGGG 57.728 36.000 0.00 0.00 0.00 4.00
2414 4763 7.057894 ACCAAAAACGCTCTTATATTATGGGA 58.942 34.615 0.00 0.00 0.00 4.37
2415 4764 7.012989 ACCAAAAACGCTCTTATATTATGGGAC 59.987 37.037 0.00 0.00 0.00 4.46
2519 4868 0.549950 TAGGACCGAGGGAGTACTGG 59.450 60.000 0.00 0.00 28.99 4.00
2551 4900 7.927305 TGTGTGTGTATTTCAATGTGATTTG 57.073 32.000 0.00 0.00 0.00 2.32
2567 4916 0.889994 TTTGGCGCATTTGAGCAGAT 59.110 45.000 10.83 0.00 42.80 2.90
2624 4973 2.030363 TGATTCACGGGCACAAATTGAC 60.030 45.455 0.00 0.00 0.00 3.18
2664 5015 7.814107 CCTAGAAATGCAAAATGCTAAACTTGA 59.186 33.333 3.78 0.00 45.31 3.02
2669 5020 6.247727 TGCAAAATGCTAAACTTGACGATA 57.752 33.333 3.78 0.00 45.31 2.92
2740 6377 0.538287 AGACCACTTCAAGCCCTTGC 60.538 55.000 3.18 0.00 40.24 4.01
2780 6418 6.183360 GCTACTCTTCAAATTTAAGCAGGAGG 60.183 42.308 0.00 0.00 0.00 4.30
2801 6439 2.185608 GCGTTCCCTGCTCTCTCC 59.814 66.667 0.00 0.00 0.00 3.71
2802 6440 2.492090 CGTTCCCTGCTCTCTCCG 59.508 66.667 0.00 0.00 0.00 4.63
2807 6471 2.716017 CCCTGCTCTCTCCGACCAC 61.716 68.421 0.00 0.00 0.00 4.16
2848 6512 4.537433 GCCAAGCTCCGGCGAGAT 62.537 66.667 9.30 0.00 44.37 2.75
2849 6513 2.187946 CCAAGCTCCGGCGAGATT 59.812 61.111 9.30 6.23 45.54 2.40
2850 6514 1.884926 CCAAGCTCCGGCGAGATTC 60.885 63.158 9.30 0.00 42.81 2.52
2851 6515 1.884926 CAAGCTCCGGCGAGATTCC 60.885 63.158 9.30 0.00 42.81 3.01
2852 6516 3.432051 AAGCTCCGGCGAGATTCCG 62.432 63.158 9.30 0.00 40.76 4.30
2857 6521 2.582498 CGGCGAGATTCCGGTGAC 60.582 66.667 0.00 0.00 42.99 3.67
2861 6525 0.931005 GCGAGATTCCGGTGACATTC 59.069 55.000 0.00 0.00 0.00 2.67
2959 6624 6.830114 GTACTCATAAAAATCTGAGGACGG 57.170 41.667 0.00 0.00 41.99 4.79
2960 6625 5.422214 ACTCATAAAAATCTGAGGACGGT 57.578 39.130 4.74 0.00 42.56 4.83
2961 6626 5.178797 ACTCATAAAAATCTGAGGACGGTG 58.821 41.667 4.74 0.00 42.56 4.94
2962 6627 4.513442 TCATAAAAATCTGAGGACGGTGG 58.487 43.478 0.00 0.00 0.00 4.61
2963 6628 2.951229 AAAAATCTGAGGACGGTGGT 57.049 45.000 0.00 0.00 0.00 4.16
2964 6629 2.951229 AAAATCTGAGGACGGTGGTT 57.049 45.000 0.00 0.00 0.00 3.67
2965 6630 2.185004 AAATCTGAGGACGGTGGTTG 57.815 50.000 0.00 0.00 0.00 3.77
2966 6631 1.056660 AATCTGAGGACGGTGGTTGT 58.943 50.000 0.00 0.00 0.00 3.32
2967 6632 1.056660 ATCTGAGGACGGTGGTTGTT 58.943 50.000 0.00 0.00 0.00 2.83
2968 6633 0.391597 TCTGAGGACGGTGGTTGTTC 59.608 55.000 0.00 0.00 0.00 3.18
2969 6634 0.393077 CTGAGGACGGTGGTTGTTCT 59.607 55.000 0.00 0.00 0.00 3.01
2970 6635 1.616865 CTGAGGACGGTGGTTGTTCTA 59.383 52.381 0.00 0.00 0.00 2.10
2971 6636 1.342174 TGAGGACGGTGGTTGTTCTAC 59.658 52.381 0.00 0.00 0.00 2.59
2972 6637 1.342174 GAGGACGGTGGTTGTTCTACA 59.658 52.381 0.00 0.00 0.00 2.74
2973 6638 1.069668 AGGACGGTGGTTGTTCTACAC 59.930 52.381 0.00 0.00 0.00 2.90
2976 6641 3.334413 GGTGGTTGTTCTACACCCC 57.666 57.895 0.00 0.00 46.90 4.95
2977 6642 0.475044 GGTGGTTGTTCTACACCCCA 59.525 55.000 0.00 0.00 46.90 4.96
2978 6643 1.544759 GGTGGTTGTTCTACACCCCAG 60.545 57.143 0.00 0.00 46.90 4.45
2979 6644 0.109723 TGGTTGTTCTACACCCCAGC 59.890 55.000 0.00 0.00 28.32 4.85
2980 6645 0.400594 GGTTGTTCTACACCCCAGCT 59.599 55.000 0.00 0.00 0.00 4.24
2981 6646 1.523758 GTTGTTCTACACCCCAGCTG 58.476 55.000 6.78 6.78 0.00 4.24
2982 6647 0.400213 TTGTTCTACACCCCAGCTGG 59.600 55.000 26.87 26.87 0.00 4.85
2983 6648 0.472925 TGTTCTACACCCCAGCTGGA 60.473 55.000 34.91 12.91 37.39 3.86
2984 6649 0.912486 GTTCTACACCCCAGCTGGAT 59.088 55.000 34.91 18.93 37.39 3.41
2985 6650 0.911769 TTCTACACCCCAGCTGGATG 59.088 55.000 34.91 30.05 37.39 3.51
2986 6651 1.153086 CTACACCCCAGCTGGATGC 60.153 63.158 34.91 0.00 43.29 3.91
2987 6652 1.913951 CTACACCCCAGCTGGATGCA 61.914 60.000 34.91 20.08 45.94 3.96
2988 6653 2.196997 TACACCCCAGCTGGATGCAC 62.197 60.000 34.91 0.00 45.94 4.57
2989 6654 3.259314 ACCCCAGCTGGATGCACA 61.259 61.111 34.91 0.00 45.94 4.57
2990 6655 2.753043 CCCCAGCTGGATGCACAC 60.753 66.667 34.91 0.00 45.94 3.82
2991 6656 2.034532 CCCAGCTGGATGCACACA 59.965 61.111 34.91 0.00 45.94 3.72
2992 6657 1.379443 CCCAGCTGGATGCACACAT 60.379 57.895 34.91 0.00 45.94 3.21
2993 6658 0.107066 CCCAGCTGGATGCACACATA 60.107 55.000 34.91 0.00 45.94 2.29
2994 6659 1.019673 CCAGCTGGATGCACACATAC 58.980 55.000 29.88 0.00 45.94 2.39
2995 6660 1.407851 CCAGCTGGATGCACACATACT 60.408 52.381 29.88 0.00 45.94 2.12
2996 6661 2.158914 CCAGCTGGATGCACACATACTA 60.159 50.000 29.88 0.00 45.94 1.82
2997 6662 2.868583 CAGCTGGATGCACACATACTAC 59.131 50.000 5.57 0.00 45.94 2.73
2998 6663 2.501316 AGCTGGATGCACACATACTACA 59.499 45.455 0.00 0.00 45.94 2.74
2999 6664 3.055167 AGCTGGATGCACACATACTACAA 60.055 43.478 0.00 0.00 45.94 2.41
3000 6665 3.063997 GCTGGATGCACACATACTACAAC 59.936 47.826 0.00 0.00 38.05 3.32
3001 6666 3.605634 TGGATGCACACATACTACAACC 58.394 45.455 0.00 0.00 38.05 3.77
3002 6667 3.008485 TGGATGCACACATACTACAACCA 59.992 43.478 0.00 0.00 38.05 3.67
3003 6668 3.374058 GGATGCACACATACTACAACCAC 59.626 47.826 0.00 0.00 36.35 4.16
3004 6669 2.409012 TGCACACATACTACAACCACG 58.591 47.619 0.00 0.00 0.00 4.94
3005 6670 1.127951 GCACACATACTACAACCACGC 59.872 52.381 0.00 0.00 0.00 5.34
3006 6671 2.409012 CACACATACTACAACCACGCA 58.591 47.619 0.00 0.00 0.00 5.24
3007 6672 2.803386 CACACATACTACAACCACGCAA 59.197 45.455 0.00 0.00 0.00 4.85
3009 6674 3.243941 ACACATACTACAACCACGCAAGA 60.244 43.478 0.00 0.00 43.62 3.02
3010 6675 3.743911 CACATACTACAACCACGCAAGAA 59.256 43.478 0.00 0.00 43.62 2.52
3011 6676 4.212425 CACATACTACAACCACGCAAGAAA 59.788 41.667 0.00 0.00 43.62 2.52
3012 6677 4.817464 ACATACTACAACCACGCAAGAAAA 59.183 37.500 0.00 0.00 43.62 2.29
3013 6678 3.685836 ACTACAACCACGCAAGAAAAC 57.314 42.857 0.00 0.00 43.62 2.43
3014 6679 3.011119 ACTACAACCACGCAAGAAAACA 58.989 40.909 0.00 0.00 43.62 2.83
3015 6680 3.630312 ACTACAACCACGCAAGAAAACAT 59.370 39.130 0.00 0.00 43.62 2.71
3016 6681 4.817464 ACTACAACCACGCAAGAAAACATA 59.183 37.500 0.00 0.00 43.62 2.29
3017 6682 4.223320 ACAACCACGCAAGAAAACATAG 57.777 40.909 0.00 0.00 43.62 2.23
3018 6683 2.979813 CAACCACGCAAGAAAACATAGC 59.020 45.455 0.00 0.00 43.62 2.97
3019 6684 2.226330 ACCACGCAAGAAAACATAGCA 58.774 42.857 0.00 0.00 43.62 3.49
3020 6685 2.621055 ACCACGCAAGAAAACATAGCAA 59.379 40.909 0.00 0.00 43.62 3.91
3021 6686 3.067461 ACCACGCAAGAAAACATAGCAAA 59.933 39.130 0.00 0.00 43.62 3.68
3022 6687 4.047822 CCACGCAAGAAAACATAGCAAAA 58.952 39.130 0.00 0.00 43.62 2.44
3023 6688 4.685628 CCACGCAAGAAAACATAGCAAAAT 59.314 37.500 0.00 0.00 43.62 1.82
3024 6689 5.861251 CCACGCAAGAAAACATAGCAAAATA 59.139 36.000 0.00 0.00 43.62 1.40
3025 6690 6.531240 CCACGCAAGAAAACATAGCAAAATAT 59.469 34.615 0.00 0.00 43.62 1.28
3026 6691 7.063308 CCACGCAAGAAAACATAGCAAAATATT 59.937 33.333 0.00 0.00 43.62 1.28
3027 6692 8.434661 CACGCAAGAAAACATAGCAAAATATTT 58.565 29.630 0.00 0.00 43.62 1.40
3028 6693 8.987890 ACGCAAGAAAACATAGCAAAATATTTT 58.012 25.926 7.64 7.64 43.62 1.82
3064 6729 8.496707 AAAATTTTGTGGGAATGATTATGAGC 57.503 30.769 1.75 0.00 0.00 4.26
3065 6730 6.795144 ATTTTGTGGGAATGATTATGAGCA 57.205 33.333 0.00 0.00 0.00 4.26
3066 6731 6.795144 TTTTGTGGGAATGATTATGAGCAT 57.205 33.333 0.00 0.00 32.16 3.79
3067 6732 5.777850 TTGTGGGAATGATTATGAGCATG 57.222 39.130 0.00 0.00 31.05 4.06
3068 6733 4.795469 TGTGGGAATGATTATGAGCATGT 58.205 39.130 0.00 0.00 31.05 3.21
3069 6734 5.202765 TGTGGGAATGATTATGAGCATGTT 58.797 37.500 0.00 0.00 31.05 2.71
3070 6735 6.363882 TGTGGGAATGATTATGAGCATGTTA 58.636 36.000 0.00 0.00 31.05 2.41
3071 6736 7.005902 TGTGGGAATGATTATGAGCATGTTAT 58.994 34.615 0.00 0.00 31.05 1.89
3072 6737 8.162746 TGTGGGAATGATTATGAGCATGTTATA 58.837 33.333 0.00 0.00 31.05 0.98
3073 6738 8.671921 GTGGGAATGATTATGAGCATGTTATAG 58.328 37.037 0.00 0.00 31.05 1.31
3074 6739 8.605065 TGGGAATGATTATGAGCATGTTATAGA 58.395 33.333 0.00 0.00 31.05 1.98
3075 6740 9.624373 GGGAATGATTATGAGCATGTTATAGAT 57.376 33.333 0.00 0.00 31.05 1.98
3077 6742 9.932699 GAATGATTATGAGCATGTTATAGATGC 57.067 33.333 9.69 9.69 45.56 3.91
3099 6764 4.512571 GCTTGCAAAGTTTGATGGTCAAAT 59.487 37.500 19.82 0.00 46.55 2.32
3100 6765 5.559417 GCTTGCAAAGTTTGATGGTCAAATG 60.559 40.000 19.82 4.33 46.55 2.32
3101 6766 5.273674 TGCAAAGTTTGATGGTCAAATGA 57.726 34.783 19.82 0.00 46.55 2.57
3102 6767 5.049167 TGCAAAGTTTGATGGTCAAATGAC 58.951 37.500 19.82 4.96 46.55 3.06
3103 6768 5.049167 GCAAAGTTTGATGGTCAAATGACA 58.951 37.500 19.82 2.63 46.55 3.58
3104 6769 5.697633 GCAAAGTTTGATGGTCAAATGACAT 59.302 36.000 19.82 6.96 46.55 3.06
3105 6770 6.128742 GCAAAGTTTGATGGTCAAATGACATC 60.129 38.462 19.82 14.38 46.55 3.06
3106 6771 5.649782 AGTTTGATGGTCAAATGACATCC 57.350 39.130 14.93 4.16 46.55 3.51
3107 6772 4.156556 AGTTTGATGGTCAAATGACATCCG 59.843 41.667 14.93 0.00 46.55 4.18
3108 6773 3.625649 TGATGGTCAAATGACATCCGA 57.374 42.857 14.93 0.78 46.47 4.55
3109 6774 3.534554 TGATGGTCAAATGACATCCGAG 58.465 45.455 14.93 0.00 46.47 4.63
3110 6775 2.401583 TGGTCAAATGACATCCGAGG 57.598 50.000 14.93 0.00 46.47 4.63
3111 6776 1.905894 TGGTCAAATGACATCCGAGGA 59.094 47.619 14.93 0.00 46.47 3.71
3112 6777 2.505407 TGGTCAAATGACATCCGAGGAT 59.495 45.455 14.93 0.00 46.47 3.24
3123 6788 2.691409 TCCGAGGATGTCATTTGACC 57.309 50.000 8.16 0.00 44.15 4.02
3124 6789 1.905894 TCCGAGGATGTCATTTGACCA 59.094 47.619 8.16 0.00 44.15 4.02
3125 6790 2.009774 CCGAGGATGTCATTTGACCAC 58.990 52.381 8.16 2.70 44.15 4.16
3126 6791 2.009774 CGAGGATGTCATTTGACCACC 58.990 52.381 8.16 10.61 44.15 4.61
3127 6792 2.355108 CGAGGATGTCATTTGACCACCT 60.355 50.000 18.81 18.81 45.21 4.00
3128 6793 3.118775 CGAGGATGTCATTTGACCACCTA 60.119 47.826 18.78 0.00 43.83 3.08
3129 6794 4.622933 CGAGGATGTCATTTGACCACCTAA 60.623 45.833 18.78 0.00 43.83 2.69
3130 6795 5.440610 GAGGATGTCATTTGACCACCTAAT 58.559 41.667 18.78 3.25 43.83 1.73
3131 6796 5.831103 AGGATGTCATTTGACCACCTAATT 58.169 37.500 17.90 0.00 42.86 1.40
3132 6797 6.256053 AGGATGTCATTTGACCACCTAATTT 58.744 36.000 17.90 2.14 42.86 1.82
3133 6798 6.725834 AGGATGTCATTTGACCACCTAATTTT 59.274 34.615 17.90 1.63 42.86 1.82
3134 6799 6.813152 GGATGTCATTTGACCACCTAATTTTG 59.187 38.462 8.16 0.00 44.15 2.44
3135 6800 6.968263 TGTCATTTGACCACCTAATTTTGA 57.032 33.333 8.16 0.00 44.15 2.69
3136 6801 7.353414 TGTCATTTGACCACCTAATTTTGAA 57.647 32.000 8.16 0.00 44.15 2.69
3137 6802 7.786030 TGTCATTTGACCACCTAATTTTGAAA 58.214 30.769 8.16 0.00 44.15 2.69
3138 6803 7.708752 TGTCATTTGACCACCTAATTTTGAAAC 59.291 33.333 8.16 0.00 44.15 2.78
3139 6804 7.170828 GTCATTTGACCACCTAATTTTGAAACC 59.829 37.037 0.00 0.00 39.07 3.27
3140 6805 6.546428 TTTGACCACCTAATTTTGAAACCA 57.454 33.333 0.00 0.00 0.00 3.67
3141 6806 6.739331 TTGACCACCTAATTTTGAAACCAT 57.261 33.333 0.00 0.00 0.00 3.55
3142 6807 6.339587 TGACCACCTAATTTTGAAACCATC 57.660 37.500 0.00 0.00 0.00 3.51
3143 6808 6.074648 TGACCACCTAATTTTGAAACCATCT 58.925 36.000 0.00 0.00 0.00 2.90
3144 6809 7.235079 TGACCACCTAATTTTGAAACCATCTA 58.765 34.615 0.00 0.00 0.00 1.98
3145 6810 7.893302 TGACCACCTAATTTTGAAACCATCTAT 59.107 33.333 0.00 0.00 0.00 1.98
3146 6811 9.403583 GACCACCTAATTTTGAAACCATCTATA 57.596 33.333 0.00 0.00 0.00 1.31
3147 6812 9.762381 ACCACCTAATTTTGAAACCATCTATAA 57.238 29.630 0.00 0.00 0.00 0.98
3210 6875 9.442047 TTTTTGAAATGTTTTGGTATGTTGTCT 57.558 25.926 0.00 0.00 0.00 3.41
3211 6876 9.442047 TTTTGAAATGTTTTGGTATGTTGTCTT 57.558 25.926 0.00 0.00 0.00 3.01
3212 6877 8.417780 TTGAAATGTTTTGGTATGTTGTCTTG 57.582 30.769 0.00 0.00 0.00 3.02
3213 6878 7.551585 TGAAATGTTTTGGTATGTTGTCTTGT 58.448 30.769 0.00 0.00 0.00 3.16
3214 6879 7.490725 TGAAATGTTTTGGTATGTTGTCTTGTG 59.509 33.333 0.00 0.00 0.00 3.33
3215 6880 5.906113 TGTTTTGGTATGTTGTCTTGTGT 57.094 34.783 0.00 0.00 0.00 3.72
3216 6881 5.645624 TGTTTTGGTATGTTGTCTTGTGTG 58.354 37.500 0.00 0.00 0.00 3.82
3217 6882 4.909696 TTTGGTATGTTGTCTTGTGTGG 57.090 40.909 0.00 0.00 0.00 4.17
3218 6883 2.857483 TGGTATGTTGTCTTGTGTGGG 58.143 47.619 0.00 0.00 0.00 4.61
3219 6884 2.173782 TGGTATGTTGTCTTGTGTGGGT 59.826 45.455 0.00 0.00 0.00 4.51
3220 6885 2.552315 GGTATGTTGTCTTGTGTGGGTG 59.448 50.000 0.00 0.00 0.00 4.61
3221 6886 2.435372 ATGTTGTCTTGTGTGGGTGT 57.565 45.000 0.00 0.00 0.00 4.16
3222 6887 3.569194 ATGTTGTCTTGTGTGGGTGTA 57.431 42.857 0.00 0.00 0.00 2.90
3223 6888 2.912771 TGTTGTCTTGTGTGGGTGTAG 58.087 47.619 0.00 0.00 0.00 2.74
3224 6889 1.602377 GTTGTCTTGTGTGGGTGTAGC 59.398 52.381 0.00 0.00 0.00 3.58
3225 6890 0.249699 TGTCTTGTGTGGGTGTAGCG 60.250 55.000 0.00 0.00 0.00 4.26
3226 6891 0.249741 GTCTTGTGTGGGTGTAGCGT 60.250 55.000 0.00 0.00 0.00 5.07
3227 6892 0.249699 TCTTGTGTGGGTGTAGCGTG 60.250 55.000 0.00 0.00 0.00 5.34
3228 6893 1.227704 TTGTGTGGGTGTAGCGTGG 60.228 57.895 0.00 0.00 0.00 4.94
3229 6894 2.358247 GTGTGGGTGTAGCGTGGG 60.358 66.667 0.00 0.00 0.00 4.61
3230 6895 2.845317 TGTGGGTGTAGCGTGGGT 60.845 61.111 0.00 0.00 0.00 4.51
3231 6896 2.358247 GTGGGTGTAGCGTGGGTG 60.358 66.667 0.00 0.00 0.00 4.61
3232 6897 4.323477 TGGGTGTAGCGTGGGTGC 62.323 66.667 0.00 0.00 0.00 5.01
3233 6898 4.323477 GGGTGTAGCGTGGGTGCA 62.323 66.667 0.00 0.00 37.31 4.57
3234 6899 3.047877 GGTGTAGCGTGGGTGCAC 61.048 66.667 8.80 8.80 43.68 4.57
3235 6900 3.047877 GTGTAGCGTGGGTGCACC 61.048 66.667 28.57 28.57 39.87 5.01
3236 6901 4.673298 TGTAGCGTGGGTGCACCG 62.673 66.667 29.08 18.77 44.64 4.94
3237 6902 4.367023 GTAGCGTGGGTGCACCGA 62.367 66.667 29.08 23.75 44.64 4.69
3238 6903 4.063967 TAGCGTGGGTGCACCGAG 62.064 66.667 29.08 22.05 44.64 4.63
3245 6910 4.643387 GGTGCACCGAGCTGGGTT 62.643 66.667 22.49 0.50 45.94 4.11
3246 6911 3.050275 GTGCACCGAGCTGGGTTC 61.050 66.667 19.00 14.51 45.94 3.62
3247 6912 3.555324 TGCACCGAGCTGGGTTCA 61.555 61.111 19.00 17.29 45.94 3.18
3248 6913 2.743928 GCACCGAGCTGGGTTCAG 60.744 66.667 19.00 8.53 44.64 3.02
3258 6923 2.568623 CTGGGTTCAGCCACTACTTT 57.431 50.000 0.00 0.00 39.65 2.66
3259 6924 2.427506 CTGGGTTCAGCCACTACTTTC 58.572 52.381 0.00 0.00 39.65 2.62
3260 6925 2.039084 CTGGGTTCAGCCACTACTTTCT 59.961 50.000 0.00 0.00 39.65 2.52
3261 6926 2.038557 TGGGTTCAGCCACTACTTTCTC 59.961 50.000 0.00 0.00 39.65 2.87
3262 6927 2.038557 GGGTTCAGCCACTACTTTCTCA 59.961 50.000 0.00 0.00 39.65 3.27
3263 6928 3.496160 GGGTTCAGCCACTACTTTCTCAA 60.496 47.826 0.00 0.00 39.65 3.02
3264 6929 4.134563 GGTTCAGCCACTACTTTCTCAAA 58.865 43.478 0.00 0.00 37.17 2.69
3265 6930 4.762251 GGTTCAGCCACTACTTTCTCAAAT 59.238 41.667 0.00 0.00 37.17 2.32
3266 6931 5.106515 GGTTCAGCCACTACTTTCTCAAATC 60.107 44.000 0.00 0.00 37.17 2.17
3267 6932 5.489792 TCAGCCACTACTTTCTCAAATCT 57.510 39.130 0.00 0.00 0.00 2.40
3268 6933 5.240891 TCAGCCACTACTTTCTCAAATCTG 58.759 41.667 0.00 0.00 0.00 2.90
3269 6934 5.012046 TCAGCCACTACTTTCTCAAATCTGA 59.988 40.000 0.00 0.00 0.00 3.27
3286 6951 8.137437 TCAAATCTGAGAAAAAGCTTTGTTAGG 58.863 33.333 13.54 2.53 34.15 2.69
3287 6952 6.581171 ATCTGAGAAAAAGCTTTGTTAGGG 57.419 37.500 13.54 3.04 0.00 3.53
3288 6953 5.690865 TCTGAGAAAAAGCTTTGTTAGGGA 58.309 37.500 13.54 5.37 0.00 4.20
3289 6954 6.306987 TCTGAGAAAAAGCTTTGTTAGGGAT 58.693 36.000 13.54 0.00 0.00 3.85
3290 6955 6.207417 TCTGAGAAAAAGCTTTGTTAGGGATG 59.793 38.462 13.54 0.00 0.00 3.51
3291 6956 5.833131 TGAGAAAAAGCTTTGTTAGGGATGT 59.167 36.000 13.54 0.00 0.00 3.06
3292 6957 6.016276 TGAGAAAAAGCTTTGTTAGGGATGTC 60.016 38.462 13.54 1.54 0.00 3.06
3293 6958 5.833131 AGAAAAAGCTTTGTTAGGGATGTCA 59.167 36.000 13.54 0.00 0.00 3.58
3294 6959 6.323739 AGAAAAAGCTTTGTTAGGGATGTCAA 59.676 34.615 13.54 0.00 0.00 3.18
3295 6960 6.670695 AAAAGCTTTGTTAGGGATGTCAAT 57.329 33.333 13.54 0.00 0.00 2.57
3296 6961 5.649782 AAGCTTTGTTAGGGATGTCAATG 57.350 39.130 0.00 0.00 0.00 2.82
3297 6962 4.922206 AGCTTTGTTAGGGATGTCAATGA 58.078 39.130 0.00 0.00 0.00 2.57
3298 6963 4.946157 AGCTTTGTTAGGGATGTCAATGAG 59.054 41.667 0.00 0.00 0.00 2.90
3299 6964 4.702131 GCTTTGTTAGGGATGTCAATGAGT 59.298 41.667 0.00 0.00 0.00 3.41
3300 6965 5.880332 GCTTTGTTAGGGATGTCAATGAGTA 59.120 40.000 0.00 0.00 0.00 2.59
3301 6966 6.374333 GCTTTGTTAGGGATGTCAATGAGTAA 59.626 38.462 0.00 0.00 0.00 2.24
3302 6967 7.414540 GCTTTGTTAGGGATGTCAATGAGTAAG 60.415 40.741 0.00 0.00 0.00 2.34
3303 6968 5.989477 TGTTAGGGATGTCAATGAGTAAGG 58.011 41.667 0.00 0.00 0.00 2.69
3304 6969 5.487488 TGTTAGGGATGTCAATGAGTAAGGT 59.513 40.000 0.00 0.00 0.00 3.50
3305 6970 6.670464 TGTTAGGGATGTCAATGAGTAAGGTA 59.330 38.462 0.00 0.00 0.00 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 5.773575 TCGAGCAAGTCATATCCTATTCAC 58.226 41.667 0.00 0.00 0.00 3.18
14 15 3.068732 CCCATTCTCTCGAGCAAGTCATA 59.931 47.826 7.81 0.00 0.00 2.15
65 66 0.320374 CGTGAAGAGGTAAGTGGCCA 59.680 55.000 0.00 0.00 0.00 5.36
106 107 3.896272 GTGGTAGCCTGTTATAGCCTACT 59.104 47.826 0.00 0.00 0.00 2.57
130 131 0.251922 TGGCTACCTACAAGGACCGT 60.252 55.000 0.00 0.00 37.67 4.83
140 141 7.469594 CGACTTACATGAATAGTTGGCTACCTA 60.470 40.741 0.00 0.00 0.00 3.08
142 143 5.462398 CGACTTACATGAATAGTTGGCTACC 59.538 44.000 0.00 0.00 0.00 3.18
147 148 4.034048 GCACCGACTTACATGAATAGTTGG 59.966 45.833 21.15 21.15 45.26 3.77
148 149 4.034048 GGCACCGACTTACATGAATAGTTG 59.966 45.833 0.00 3.50 0.00 3.16
149 150 4.189231 GGCACCGACTTACATGAATAGTT 58.811 43.478 0.00 0.00 0.00 2.24
150 151 3.196901 TGGCACCGACTTACATGAATAGT 59.803 43.478 0.00 0.00 0.00 2.12
151 152 3.792401 TGGCACCGACTTACATGAATAG 58.208 45.455 0.00 0.00 0.00 1.73
152 153 3.897141 TGGCACCGACTTACATGAATA 57.103 42.857 0.00 0.00 0.00 1.75
172 173 0.657312 CAATGTGTATGCGCCGTCAT 59.343 50.000 4.18 0.00 0.00 3.06
232 1275 1.519246 GTCCTTGGCGGTAGGGTAC 59.481 63.158 0.00 0.00 33.41 3.34
233 1276 2.053865 CGTCCTTGGCGGTAGGGTA 61.054 63.158 0.00 0.00 33.41 3.69
234 1277 3.387947 CGTCCTTGGCGGTAGGGT 61.388 66.667 0.00 0.00 33.41 4.34
235 1278 2.432300 ATCGTCCTTGGCGGTAGGG 61.432 63.158 0.00 0.00 33.41 3.53
236 1279 1.227263 CATCGTCCTTGGCGGTAGG 60.227 63.158 0.00 0.00 0.00 3.18
237 1280 0.527817 GTCATCGTCCTTGGCGGTAG 60.528 60.000 4.32 0.00 0.00 3.18
238 1281 1.514087 GTCATCGTCCTTGGCGGTA 59.486 57.895 4.32 0.00 0.00 4.02
239 1282 2.264794 GTCATCGTCCTTGGCGGT 59.735 61.111 4.32 0.00 0.00 5.68
240 1283 2.629050 ATCGTCATCGTCCTTGGCGG 62.629 60.000 0.00 0.00 42.22 6.13
241 1284 0.030235 TATCGTCATCGTCCTTGGCG 59.970 55.000 0.00 0.00 43.25 5.69
242 1285 1.772182 CTATCGTCATCGTCCTTGGC 58.228 55.000 0.00 0.00 38.33 4.52
243 1286 1.067060 TGCTATCGTCATCGTCCTTGG 59.933 52.381 0.00 0.00 38.33 3.61
244 1287 2.492019 TGCTATCGTCATCGTCCTTG 57.508 50.000 0.00 0.00 38.33 3.61
245 1288 3.520290 TTTGCTATCGTCATCGTCCTT 57.480 42.857 0.00 0.00 38.33 3.36
246 1289 3.520290 TTTTGCTATCGTCATCGTCCT 57.480 42.857 0.00 0.00 38.33 3.85
292 1386 6.964908 TGAAAGTTTAGCACGATTTGATCAA 58.035 32.000 3.38 3.38 0.00 2.57
368 1464 0.107508 CATCATCCTGCACCGTCCTT 60.108 55.000 0.00 0.00 0.00 3.36
379 1475 1.144503 GCCAGGTCCATTCATCATCCT 59.855 52.381 0.00 0.00 0.00 3.24
396 1492 0.035152 ACTTGATCAATGCCTCGCCA 60.035 50.000 8.96 0.00 0.00 5.69
411 1507 3.483196 CGCAAACAGACAAACATCACTTG 59.517 43.478 0.00 0.00 0.00 3.16
485 1585 2.340443 GATCCCCGGTGATCGAGC 59.660 66.667 11.33 0.00 42.43 5.03
561 1663 9.409312 CTCTAGAATGTTAGTATGATTGAGCTG 57.591 37.037 0.00 0.00 0.00 4.24
562 1664 9.142014 ACTCTAGAATGTTAGTATGATTGAGCT 57.858 33.333 0.00 0.00 0.00 4.09
563 1665 9.757227 AACTCTAGAATGTTAGTATGATTGAGC 57.243 33.333 0.00 0.00 0.00 4.26
568 1670 7.653713 CGCCAAACTCTAGAATGTTAGTATGAT 59.346 37.037 0.00 0.00 0.00 2.45
569 1671 6.978659 CGCCAAACTCTAGAATGTTAGTATGA 59.021 38.462 0.00 0.00 0.00 2.15
570 1672 6.292381 GCGCCAAACTCTAGAATGTTAGTATG 60.292 42.308 0.00 0.00 0.00 2.39
571 1673 5.753921 GCGCCAAACTCTAGAATGTTAGTAT 59.246 40.000 0.00 0.00 0.00 2.12
572 1674 5.107133 GCGCCAAACTCTAGAATGTTAGTA 58.893 41.667 0.00 0.00 0.00 1.82
573 1675 3.933332 GCGCCAAACTCTAGAATGTTAGT 59.067 43.478 0.00 0.00 0.00 2.24
574 1676 3.932710 TGCGCCAAACTCTAGAATGTTAG 59.067 43.478 4.18 0.00 0.00 2.34
589 1691 2.603412 CGTGATTTACAGTTTGCGCCAA 60.603 45.455 4.18 0.00 0.00 4.52
590 1692 1.069568 CGTGATTTACAGTTTGCGCCA 60.070 47.619 4.18 0.00 0.00 5.69
627 1729 5.515626 GCTGTAATTTCACGAACGATCTACT 59.484 40.000 0.14 0.00 0.00 2.57
668 1771 1.290134 ACAGAAATCACTCCTCCCCC 58.710 55.000 0.00 0.00 0.00 5.40
669 1772 2.838202 TGTACAGAAATCACTCCTCCCC 59.162 50.000 0.00 0.00 0.00 4.81
670 1773 3.260884 TGTGTACAGAAATCACTCCTCCC 59.739 47.826 0.00 0.00 33.82 4.30
673 1776 5.249393 AGGAATGTGTACAGAAATCACTCCT 59.751 40.000 7.41 7.41 34.32 3.69
739 1847 9.935241 ATACTATGATTCACATCCAATACACTC 57.065 33.333 0.00 0.00 40.07 3.51
745 1853 9.499479 GAAGTGATACTATGATTCACATCCAAT 57.501 33.333 5.23 0.00 41.71 3.16
746 1854 7.653311 CGAAGTGATACTATGATTCACATCCAA 59.347 37.037 5.23 0.00 41.71 3.53
747 1855 7.147976 CGAAGTGATACTATGATTCACATCCA 58.852 38.462 5.23 0.00 41.71 3.41
775 1885 2.023223 GTGTTGGCCGCAAGCAATG 61.023 57.895 0.00 0.00 46.50 2.82
776 1886 2.339712 GTGTTGGCCGCAAGCAAT 59.660 55.556 0.00 0.00 46.50 3.56
777 1887 3.910490 GGTGTTGGCCGCAAGCAA 61.910 61.111 0.00 0.00 46.50 3.91
868 2005 3.569194 TGTTTGTAACCTTGGAGCTGA 57.431 42.857 0.00 0.00 0.00 4.26
927 2064 3.961480 AAAAAGGGTCTTTATGCAGGC 57.039 42.857 0.00 0.00 0.00 4.85
958 2098 1.220749 GCCTTGAGTATGCGGGTGA 59.779 57.895 0.00 0.00 0.00 4.02
967 2107 0.882927 GTGCGTTGTGGCCTTGAGTA 60.883 55.000 3.32 0.00 0.00 2.59
1216 2365 1.152096 ACGAAGAACCCCCAGTCCT 60.152 57.895 0.00 0.00 0.00 3.85
1497 2646 0.524816 CGATGACCGTACCTGAACCG 60.525 60.000 0.00 0.00 0.00 4.44
1516 2665 3.002791 TGGTTGCAGAATCGATTGAGTC 58.997 45.455 16.96 1.99 39.46 3.36
1525 2674 2.370281 TCTCTCGTGGTTGCAGAATC 57.630 50.000 0.00 0.00 0.00 2.52
1537 2686 7.275183 TGAATCATATGAACCATTTCTCTCGT 58.725 34.615 9.99 0.00 32.36 4.18
1565 2735 5.056480 TGCATCGAGATTAACATCCGAAAT 58.944 37.500 0.00 0.00 36.39 2.17
1566 2736 4.438148 TGCATCGAGATTAACATCCGAAA 58.562 39.130 0.00 0.00 36.39 3.46
1567 2737 4.053469 TGCATCGAGATTAACATCCGAA 57.947 40.909 0.00 0.00 36.39 4.30
1568 2738 3.726291 TGCATCGAGATTAACATCCGA 57.274 42.857 0.00 0.00 36.88 4.55
1569 2739 4.794248 TTTGCATCGAGATTAACATCCG 57.206 40.909 0.00 0.00 0.00 4.18
1570 2740 6.728200 TCAATTTGCATCGAGATTAACATCC 58.272 36.000 0.00 0.00 0.00 3.51
1571 2741 7.859377 ACATCAATTTGCATCGAGATTAACATC 59.141 33.333 0.00 0.00 0.00 3.06
1572 2742 7.646526 CACATCAATTTGCATCGAGATTAACAT 59.353 33.333 0.00 0.00 0.00 2.71
1573 2743 6.968335 CACATCAATTTGCATCGAGATTAACA 59.032 34.615 0.00 0.00 0.00 2.41
1596 2774 2.747822 CGCCTCTCTGCATGCACAC 61.748 63.158 18.46 1.60 0.00 3.82
1701 2879 1.500844 CTTGAAGAAGCAGCGCAGG 59.499 57.895 11.47 1.51 0.00 4.85
1706 2884 1.163554 CTGGTCCTTGAAGAAGCAGC 58.836 55.000 0.00 0.00 32.48 5.25
1708 2886 1.072331 GGTCTGGTCCTTGAAGAAGCA 59.928 52.381 0.00 0.00 0.00 3.91
2194 3372 4.162131 TCACGATGGATCCTTCATTCAAGA 59.838 41.667 23.41 10.82 33.29 3.02
2198 3376 5.528690 TGAATTCACGATGGATCCTTCATTC 59.471 40.000 23.41 21.79 0.00 2.67
2211 3389 4.560128 CGGTAGGATCATGAATTCACGAT 58.440 43.478 16.42 16.42 30.75 3.73
2214 3392 3.733337 AGCGGTAGGATCATGAATTCAC 58.267 45.455 11.07 0.00 0.00 3.18
2323 4672 9.915629 GAGAGAGTGATTATTAATACGGACAAT 57.084 33.333 0.00 0.00 0.00 2.71
2328 4677 6.910995 ACGGAGAGAGTGATTATTAATACGG 58.089 40.000 0.00 0.00 0.00 4.02
2330 4679 7.039923 TGGGACGGAGAGAGTGATTATTAATAC 60.040 40.741 0.00 0.00 0.00 1.89
2341 4690 6.835819 TTATATTATGGGACGGAGAGAGTG 57.164 41.667 0.00 0.00 0.00 3.51
2345 4694 5.577164 CGCTTTTATATTATGGGACGGAGAG 59.423 44.000 0.00 0.00 0.00 3.20
2350 4699 7.911205 TCAAAAACGCTTTTATATTATGGGACG 59.089 33.333 0.00 0.00 32.85 4.79
2351 4700 9.016623 GTCAAAAACGCTTTTATATTATGGGAC 57.983 33.333 0.00 0.00 32.85 4.46
2354 4703 9.567848 AGTGTCAAAAACGCTTTTATATTATGG 57.432 29.630 0.00 0.00 46.62 2.74
2367 4716 8.188531 TGGTATTATACTAGTGTCAAAAACGC 57.811 34.615 5.39 0.00 38.74 4.84
2376 4725 8.255905 AGAGCGTTTTTGGTATTATACTAGTGT 58.744 33.333 5.39 0.39 0.00 3.55
2377 4726 8.644318 AGAGCGTTTTTGGTATTATACTAGTG 57.356 34.615 5.39 0.00 0.00 2.74
2387 4736 9.010029 CCCATAATATAAGAGCGTTTTTGGTAT 57.990 33.333 0.00 0.00 0.00 2.73
2388 4737 8.212312 TCCCATAATATAAGAGCGTTTTTGGTA 58.788 33.333 0.00 0.00 0.00 3.25
2389 4738 7.012989 GTCCCATAATATAAGAGCGTTTTTGGT 59.987 37.037 0.00 0.00 0.00 3.67
2390 4739 7.012894 TGTCCCATAATATAAGAGCGTTTTTGG 59.987 37.037 0.00 0.00 0.00 3.28
2391 4740 7.925993 TGTCCCATAATATAAGAGCGTTTTTG 58.074 34.615 0.00 0.00 0.00 2.44
2392 4741 7.990886 TCTGTCCCATAATATAAGAGCGTTTTT 59.009 33.333 0.00 0.00 0.00 1.94
2393 4742 7.506114 TCTGTCCCATAATATAAGAGCGTTTT 58.494 34.615 0.00 0.00 0.00 2.43
2394 4743 7.062749 TCTGTCCCATAATATAAGAGCGTTT 57.937 36.000 0.00 0.00 0.00 3.60
2395 4744 6.295349 CCTCTGTCCCATAATATAAGAGCGTT 60.295 42.308 0.00 0.00 0.00 4.84
2396 4745 5.186021 CCTCTGTCCCATAATATAAGAGCGT 59.814 44.000 0.00 0.00 0.00 5.07
2397 4746 5.419155 TCCTCTGTCCCATAATATAAGAGCG 59.581 44.000 0.00 0.00 0.00 5.03
2398 4747 6.859112 TCCTCTGTCCCATAATATAAGAGC 57.141 41.667 0.00 0.00 0.00 4.09
2399 4748 8.429237 ACTTCCTCTGTCCCATAATATAAGAG 57.571 38.462 0.00 0.00 0.00 2.85
2400 4749 9.310449 GTACTTCCTCTGTCCCATAATATAAGA 57.690 37.037 0.00 0.00 0.00 2.10
2401 4750 9.315363 AGTACTTCCTCTGTCCCATAATATAAG 57.685 37.037 0.00 0.00 0.00 1.73
2402 4751 9.670442 AAGTACTTCCTCTGTCCCATAATATAA 57.330 33.333 1.12 0.00 0.00 0.98
2403 4752 9.310449 GAAGTACTTCCTCTGTCCCATAATATA 57.690 37.037 22.74 0.00 33.64 0.86
2404 4753 8.196378 GAAGTACTTCCTCTGTCCCATAATAT 57.804 38.462 22.74 0.00 33.64 1.28
2405 4754 7.598759 GAAGTACTTCCTCTGTCCCATAATA 57.401 40.000 22.74 0.00 33.64 0.98
2406 4755 6.487299 GAAGTACTTCCTCTGTCCCATAAT 57.513 41.667 22.74 0.00 33.64 1.28
2407 4756 5.934402 GAAGTACTTCCTCTGTCCCATAA 57.066 43.478 22.74 0.00 33.64 1.90
2420 4769 6.650427 ATTTTGAAACAGGGGAAGTACTTC 57.350 37.500 24.73 24.73 38.80 3.01
2421 4770 7.783119 ACTTATTTTGAAACAGGGGAAGTACTT 59.217 33.333 8.13 8.13 0.00 2.24
2422 4771 7.230712 CACTTATTTTGAAACAGGGGAAGTACT 59.769 37.037 0.00 0.00 0.00 2.73
2423 4772 7.229907 TCACTTATTTTGAAACAGGGGAAGTAC 59.770 37.037 0.00 0.00 0.00 2.73
2424 4773 7.291566 TCACTTATTTTGAAACAGGGGAAGTA 58.708 34.615 0.00 0.00 0.00 2.24
2425 4774 6.133356 TCACTTATTTTGAAACAGGGGAAGT 58.867 36.000 0.00 0.00 0.00 3.01
2426 4775 6.648879 TCACTTATTTTGAAACAGGGGAAG 57.351 37.500 0.00 0.00 0.00 3.46
2427 4776 6.780031 TCATCACTTATTTTGAAACAGGGGAA 59.220 34.615 0.00 0.00 0.00 3.97
2428 4777 6.310941 TCATCACTTATTTTGAAACAGGGGA 58.689 36.000 0.00 0.00 0.00 4.81
2429 4778 6.588719 TCATCACTTATTTTGAAACAGGGG 57.411 37.500 0.00 0.00 0.00 4.79
2430 4779 7.543172 CACATCATCACTTATTTTGAAACAGGG 59.457 37.037 0.00 0.00 0.00 4.45
2431 4780 7.543172 CCACATCATCACTTATTTTGAAACAGG 59.457 37.037 0.00 0.00 0.00 4.00
2506 4855 6.829298 ACACATATATATCCAGTACTCCCTCG 59.171 42.308 0.00 0.00 0.00 4.63
2544 4893 0.994263 GCTCAAATGCGCCAAATCAC 59.006 50.000 4.18 0.00 0.00 3.06
2551 4900 0.666913 ATGATCTGCTCAAATGCGCC 59.333 50.000 4.18 0.00 37.44 6.53
2624 4973 6.841443 CATTTCTAGGTAGAGATGCAACTG 57.159 41.667 0.00 0.00 37.87 3.16
2704 5055 5.998363 AGTGGTCTAACTTTTGAGAATGGAC 59.002 40.000 0.00 0.00 0.00 4.02
2707 5058 7.496529 TGAAGTGGTCTAACTTTTGAGAATG 57.503 36.000 0.00 0.00 40.48 2.67
2713 6350 4.261614 GGGCTTGAAGTGGTCTAACTTTTG 60.262 45.833 0.00 0.00 40.48 2.44
2766 6404 1.478631 GCCTGCCTCCTGCTTAAATT 58.521 50.000 0.00 0.00 42.00 1.82
2769 6407 2.124507 AACGCCTGCCTCCTGCTTAA 62.125 55.000 0.00 0.00 42.00 1.85
2793 6431 1.509004 GACAGTGGTCGGAGAGAGC 59.491 63.158 0.00 0.00 46.92 4.09
2802 6440 1.284657 CATGCATCGAGACAGTGGTC 58.715 55.000 0.00 0.00 44.66 4.02
2843 6507 2.586258 AGAATGTCACCGGAATCTCG 57.414 50.000 9.46 0.00 0.00 4.04
2844 6508 3.623510 GGAAAGAATGTCACCGGAATCTC 59.376 47.826 9.46 0.00 0.00 2.75
2845 6509 3.264450 AGGAAAGAATGTCACCGGAATCT 59.736 43.478 9.46 0.00 0.00 2.40
2846 6510 3.610911 AGGAAAGAATGTCACCGGAATC 58.389 45.455 9.46 0.00 0.00 2.52
2847 6511 3.610911 GAGGAAAGAATGTCACCGGAAT 58.389 45.455 9.46 0.00 0.00 3.01
2848 6512 2.290071 GGAGGAAAGAATGTCACCGGAA 60.290 50.000 9.46 0.00 0.00 4.30
2849 6513 1.278127 GGAGGAAAGAATGTCACCGGA 59.722 52.381 9.46 0.00 0.00 5.14
2850 6514 1.003118 TGGAGGAAAGAATGTCACCGG 59.997 52.381 0.00 0.00 0.00 5.28
2851 6515 2.076863 GTGGAGGAAAGAATGTCACCG 58.923 52.381 0.00 0.00 0.00 4.94
2852 6516 3.425162 AGTGGAGGAAAGAATGTCACC 57.575 47.619 0.00 0.00 0.00 4.02
2853 6517 5.066593 AGAAAGTGGAGGAAAGAATGTCAC 58.933 41.667 0.00 0.00 0.00 3.67
2857 6521 4.319177 ACGAGAAAGTGGAGGAAAGAATG 58.681 43.478 0.00 0.00 0.00 2.67
2861 6525 3.669251 AGACGAGAAAGTGGAGGAAAG 57.331 47.619 0.00 0.00 0.00 2.62
2952 6617 1.342174 TGTAGAACAACCACCGTCCTC 59.658 52.381 0.00 0.00 0.00 3.71
2955 6620 1.505425 GGTGTAGAACAACCACCGTC 58.495 55.000 0.00 0.00 39.29 4.79
2956 6621 3.692424 GGTGTAGAACAACCACCGT 57.308 52.632 0.00 0.00 39.29 4.83
2962 6627 1.523758 CAGCTGGGGTGTAGAACAAC 58.476 55.000 5.57 0.00 34.36 3.32
2963 6628 0.400213 CCAGCTGGGGTGTAGAACAA 59.600 55.000 26.14 0.00 0.00 2.83
2964 6629 0.472925 TCCAGCTGGGGTGTAGAACA 60.473 55.000 32.23 6.10 37.22 3.18
2965 6630 0.912486 ATCCAGCTGGGGTGTAGAAC 59.088 55.000 32.23 0.00 37.22 3.01
2966 6631 0.911769 CATCCAGCTGGGGTGTAGAA 59.088 55.000 32.23 11.11 43.32 2.10
2967 6632 2.607811 CATCCAGCTGGGGTGTAGA 58.392 57.895 32.23 11.92 43.32 2.59
2972 6637 3.259314 TGTGCATCCAGCTGGGGT 61.259 61.111 32.23 18.59 45.94 4.95
2973 6638 2.753043 GTGTGCATCCAGCTGGGG 60.753 66.667 32.23 24.28 45.94 4.96
2974 6639 0.107066 TATGTGTGCATCCAGCTGGG 60.107 55.000 32.23 18.37 45.94 4.45
2975 6640 1.019673 GTATGTGTGCATCCAGCTGG 58.980 55.000 27.87 27.87 45.94 4.85
2976 6641 2.034104 AGTATGTGTGCATCCAGCTG 57.966 50.000 6.78 6.78 45.94 4.24
2977 6642 2.501316 TGTAGTATGTGTGCATCCAGCT 59.499 45.455 0.00 0.00 45.94 4.24
2978 6643 2.905075 TGTAGTATGTGTGCATCCAGC 58.095 47.619 0.00 0.00 45.96 4.85
2979 6644 3.623060 GGTTGTAGTATGTGTGCATCCAG 59.377 47.826 0.00 0.00 36.58 3.86
2980 6645 3.008485 TGGTTGTAGTATGTGTGCATCCA 59.992 43.478 0.00 0.00 36.58 3.41
2981 6646 3.374058 GTGGTTGTAGTATGTGTGCATCC 59.626 47.826 0.00 0.00 36.58 3.51
2982 6647 3.062099 CGTGGTTGTAGTATGTGTGCATC 59.938 47.826 0.00 0.00 36.58 3.91
2983 6648 3.000041 CGTGGTTGTAGTATGTGTGCAT 59.000 45.455 0.00 0.00 39.03 3.96
2984 6649 2.409012 CGTGGTTGTAGTATGTGTGCA 58.591 47.619 0.00 0.00 0.00 4.57
2985 6650 1.127951 GCGTGGTTGTAGTATGTGTGC 59.872 52.381 0.00 0.00 0.00 4.57
2986 6651 2.409012 TGCGTGGTTGTAGTATGTGTG 58.591 47.619 0.00 0.00 0.00 3.82
2987 6652 2.823924 TGCGTGGTTGTAGTATGTGT 57.176 45.000 0.00 0.00 0.00 3.72
2988 6653 3.322369 TCTTGCGTGGTTGTAGTATGTG 58.678 45.455 0.00 0.00 0.00 3.21
2989 6654 3.671008 TCTTGCGTGGTTGTAGTATGT 57.329 42.857 0.00 0.00 0.00 2.29
2990 6655 5.144359 GTTTTCTTGCGTGGTTGTAGTATG 58.856 41.667 0.00 0.00 0.00 2.39
2991 6656 4.817464 TGTTTTCTTGCGTGGTTGTAGTAT 59.183 37.500 0.00 0.00 0.00 2.12
2992 6657 4.190001 TGTTTTCTTGCGTGGTTGTAGTA 58.810 39.130 0.00 0.00 0.00 1.82
2993 6658 3.011119 TGTTTTCTTGCGTGGTTGTAGT 58.989 40.909 0.00 0.00 0.00 2.73
2994 6659 3.684103 TGTTTTCTTGCGTGGTTGTAG 57.316 42.857 0.00 0.00 0.00 2.74
2995 6660 4.319911 GCTATGTTTTCTTGCGTGGTTGTA 60.320 41.667 0.00 0.00 0.00 2.41
2996 6661 3.550030 GCTATGTTTTCTTGCGTGGTTGT 60.550 43.478 0.00 0.00 0.00 3.32
2997 6662 2.979813 GCTATGTTTTCTTGCGTGGTTG 59.020 45.455 0.00 0.00 0.00 3.77
2998 6663 2.621055 TGCTATGTTTTCTTGCGTGGTT 59.379 40.909 0.00 0.00 0.00 3.67
2999 6664 2.226330 TGCTATGTTTTCTTGCGTGGT 58.774 42.857 0.00 0.00 0.00 4.16
3000 6665 2.987413 TGCTATGTTTTCTTGCGTGG 57.013 45.000 0.00 0.00 0.00 4.94
3001 6666 5.827568 ATTTTGCTATGTTTTCTTGCGTG 57.172 34.783 0.00 0.00 0.00 5.34
3002 6667 8.532977 AAATATTTTGCTATGTTTTCTTGCGT 57.467 26.923 0.00 0.00 0.00 5.24
3038 6703 9.598517 GCTCATAATCATTCCCACAAAATTTTA 57.401 29.630 2.44 0.00 0.00 1.52
3039 6704 8.102047 TGCTCATAATCATTCCCACAAAATTTT 58.898 29.630 0.00 0.00 0.00 1.82
3040 6705 7.622713 TGCTCATAATCATTCCCACAAAATTT 58.377 30.769 0.00 0.00 0.00 1.82
3041 6706 7.185318 TGCTCATAATCATTCCCACAAAATT 57.815 32.000 0.00 0.00 0.00 1.82
3042 6707 6.795144 TGCTCATAATCATTCCCACAAAAT 57.205 33.333 0.00 0.00 0.00 1.82
3043 6708 6.154877 ACATGCTCATAATCATTCCCACAAAA 59.845 34.615 0.00 0.00 0.00 2.44
3044 6709 5.657745 ACATGCTCATAATCATTCCCACAAA 59.342 36.000 0.00 0.00 0.00 2.83
3045 6710 5.202765 ACATGCTCATAATCATTCCCACAA 58.797 37.500 0.00 0.00 0.00 3.33
3046 6711 4.795469 ACATGCTCATAATCATTCCCACA 58.205 39.130 0.00 0.00 0.00 4.17
3047 6712 5.779529 AACATGCTCATAATCATTCCCAC 57.220 39.130 0.00 0.00 0.00 4.61
3048 6713 8.605065 TCTATAACATGCTCATAATCATTCCCA 58.395 33.333 0.00 0.00 0.00 4.37
3049 6714 9.624373 ATCTATAACATGCTCATAATCATTCCC 57.376 33.333 0.00 0.00 0.00 3.97
3051 6716 9.932699 GCATCTATAACATGCTCATAATCATTC 57.067 33.333 8.48 0.00 42.95 2.67
3063 6728 5.585390 ACTTTGCAAGCATCTATAACATGC 58.415 37.500 0.00 7.87 46.05 4.06
3064 6729 7.756272 TCAAACTTTGCAAGCATCTATAACATG 59.244 33.333 0.00 0.00 0.00 3.21
3065 6730 7.829725 TCAAACTTTGCAAGCATCTATAACAT 58.170 30.769 0.00 0.00 0.00 2.71
3066 6731 7.213216 TCAAACTTTGCAAGCATCTATAACA 57.787 32.000 0.00 0.00 0.00 2.41
3067 6732 7.221452 CCATCAAACTTTGCAAGCATCTATAAC 59.779 37.037 0.00 0.00 0.00 1.89
3068 6733 7.093814 ACCATCAAACTTTGCAAGCATCTATAA 60.094 33.333 0.00 0.00 0.00 0.98
3069 6734 6.377996 ACCATCAAACTTTGCAAGCATCTATA 59.622 34.615 0.00 0.00 0.00 1.31
3070 6735 5.186409 ACCATCAAACTTTGCAAGCATCTAT 59.814 36.000 0.00 0.00 0.00 1.98
3071 6736 4.523943 ACCATCAAACTTTGCAAGCATCTA 59.476 37.500 0.00 0.00 0.00 1.98
3072 6737 3.322828 ACCATCAAACTTTGCAAGCATCT 59.677 39.130 0.00 0.00 0.00 2.90
3073 6738 3.656559 ACCATCAAACTTTGCAAGCATC 58.343 40.909 0.00 0.00 0.00 3.91
3074 6739 3.069872 TGACCATCAAACTTTGCAAGCAT 59.930 39.130 0.00 0.00 0.00 3.79
3075 6740 2.429971 TGACCATCAAACTTTGCAAGCA 59.570 40.909 0.00 0.00 0.00 3.91
3076 6741 3.096489 TGACCATCAAACTTTGCAAGC 57.904 42.857 0.00 0.00 0.00 4.01
3086 6751 9.911709 ATCCTCGGATGTCATTTGACCATCAAA 62.912 40.741 17.18 6.46 44.15 2.69
3087 6752 3.940852 CTCGGATGTCATTTGACCATCAA 59.059 43.478 17.18 0.00 44.15 2.57
3088 6753 3.534554 CTCGGATGTCATTTGACCATCA 58.465 45.455 17.18 0.42 44.15 3.07
3089 6754 2.874701 CCTCGGATGTCATTTGACCATC 59.125 50.000 8.16 10.18 44.15 3.51
3090 6755 2.505407 TCCTCGGATGTCATTTGACCAT 59.495 45.455 8.16 2.53 44.15 3.55
3091 6756 1.905894 TCCTCGGATGTCATTTGACCA 59.094 47.619 8.16 0.00 44.15 4.02
3092 6757 2.691409 TCCTCGGATGTCATTTGACC 57.309 50.000 8.16 0.00 44.15 4.02
3103 6768 2.505407 TGGTCAAATGACATCCTCGGAT 59.495 45.455 14.93 0.00 46.47 4.18
3104 6769 1.905894 TGGTCAAATGACATCCTCGGA 59.094 47.619 14.93 0.00 46.47 4.55
3105 6770 2.009774 GTGGTCAAATGACATCCTCGG 58.990 52.381 14.93 0.00 46.47 4.63
3106 6771 2.009774 GGTGGTCAAATGACATCCTCG 58.990 52.381 14.93 0.00 46.47 4.63
3107 6772 3.356529 AGGTGGTCAAATGACATCCTC 57.643 47.619 14.93 0.00 46.47 3.71
3108 6773 4.927267 TTAGGTGGTCAAATGACATCCT 57.073 40.909 22.57 22.57 46.47 3.24
3109 6774 6.530019 AAATTAGGTGGTCAAATGACATCC 57.470 37.500 14.93 14.55 46.47 3.51
3110 6775 7.601856 TCAAAATTAGGTGGTCAAATGACATC 58.398 34.615 14.93 7.15 46.47 3.06
3111 6776 7.537596 TCAAAATTAGGTGGTCAAATGACAT 57.462 32.000 14.93 1.44 46.47 3.06
3112 6777 6.968263 TCAAAATTAGGTGGTCAAATGACA 57.032 33.333 14.93 0.00 46.47 3.58
3113 6778 7.170828 GGTTTCAAAATTAGGTGGTCAAATGAC 59.829 37.037 4.96 4.96 44.04 3.06
3114 6779 7.147655 TGGTTTCAAAATTAGGTGGTCAAATGA 60.148 33.333 0.00 0.00 0.00 2.57
3115 6780 6.989169 TGGTTTCAAAATTAGGTGGTCAAATG 59.011 34.615 0.00 0.00 0.00 2.32
3116 6781 7.130681 TGGTTTCAAAATTAGGTGGTCAAAT 57.869 32.000 0.00 0.00 0.00 2.32
3117 6782 6.546428 TGGTTTCAAAATTAGGTGGTCAAA 57.454 33.333 0.00 0.00 0.00 2.69
3118 6783 6.553100 AGATGGTTTCAAAATTAGGTGGTCAA 59.447 34.615 0.00 0.00 0.00 3.18
3119 6784 6.074648 AGATGGTTTCAAAATTAGGTGGTCA 58.925 36.000 0.00 0.00 0.00 4.02
3120 6785 6.590234 AGATGGTTTCAAAATTAGGTGGTC 57.410 37.500 0.00 0.00 0.00 4.02
3121 6786 9.762381 TTATAGATGGTTTCAAAATTAGGTGGT 57.238 29.630 0.00 0.00 0.00 4.16
3184 6849 9.442047 AGACAACATACCAAAACATTTCAAAAA 57.558 25.926 0.00 0.00 0.00 1.94
3185 6850 9.442047 AAGACAACATACCAAAACATTTCAAAA 57.558 25.926 0.00 0.00 0.00 2.44
3186 6851 8.877779 CAAGACAACATACCAAAACATTTCAAA 58.122 29.630 0.00 0.00 0.00 2.69
3187 6852 8.037758 ACAAGACAACATACCAAAACATTTCAA 58.962 29.630 0.00 0.00 0.00 2.69
3188 6853 7.490725 CACAAGACAACATACCAAAACATTTCA 59.509 33.333 0.00 0.00 0.00 2.69
3189 6854 7.491048 ACACAAGACAACATACCAAAACATTTC 59.509 33.333 0.00 0.00 0.00 2.17
3190 6855 7.277539 CACACAAGACAACATACCAAAACATTT 59.722 33.333 0.00 0.00 0.00 2.32
3191 6856 6.756074 CACACAAGACAACATACCAAAACATT 59.244 34.615 0.00 0.00 0.00 2.71
3192 6857 6.272318 CACACAAGACAACATACCAAAACAT 58.728 36.000 0.00 0.00 0.00 2.71
3193 6858 5.393569 CCACACAAGACAACATACCAAAACA 60.394 40.000 0.00 0.00 0.00 2.83
3194 6859 5.040635 CCACACAAGACAACATACCAAAAC 58.959 41.667 0.00 0.00 0.00 2.43
3195 6860 4.098654 CCCACACAAGACAACATACCAAAA 59.901 41.667 0.00 0.00 0.00 2.44
3196 6861 3.634448 CCCACACAAGACAACATACCAAA 59.366 43.478 0.00 0.00 0.00 3.28
3197 6862 3.218453 CCCACACAAGACAACATACCAA 58.782 45.455 0.00 0.00 0.00 3.67
3198 6863 2.173782 ACCCACACAAGACAACATACCA 59.826 45.455 0.00 0.00 0.00 3.25
3199 6864 2.552315 CACCCACACAAGACAACATACC 59.448 50.000 0.00 0.00 0.00 2.73
3200 6865 3.211045 ACACCCACACAAGACAACATAC 58.789 45.455 0.00 0.00 0.00 2.39
3201 6866 3.569194 ACACCCACACAAGACAACATA 57.431 42.857 0.00 0.00 0.00 2.29
3202 6867 2.435372 ACACCCACACAAGACAACAT 57.565 45.000 0.00 0.00 0.00 2.71
3203 6868 2.912771 CTACACCCACACAAGACAACA 58.087 47.619 0.00 0.00 0.00 3.33
3204 6869 1.602377 GCTACACCCACACAAGACAAC 59.398 52.381 0.00 0.00 0.00 3.32
3205 6870 1.808512 CGCTACACCCACACAAGACAA 60.809 52.381 0.00 0.00 0.00 3.18
3206 6871 0.249699 CGCTACACCCACACAAGACA 60.250 55.000 0.00 0.00 0.00 3.41
3207 6872 0.249741 ACGCTACACCCACACAAGAC 60.250 55.000 0.00 0.00 0.00 3.01
3208 6873 0.249699 CACGCTACACCCACACAAGA 60.250 55.000 0.00 0.00 0.00 3.02
3209 6874 1.227999 CCACGCTACACCCACACAAG 61.228 60.000 0.00 0.00 0.00 3.16
3210 6875 1.227704 CCACGCTACACCCACACAA 60.228 57.895 0.00 0.00 0.00 3.33
3211 6876 2.423874 CCACGCTACACCCACACA 59.576 61.111 0.00 0.00 0.00 3.72
3212 6877 2.358247 CCCACGCTACACCCACAC 60.358 66.667 0.00 0.00 0.00 3.82
3213 6878 2.845317 ACCCACGCTACACCCACA 60.845 61.111 0.00 0.00 0.00 4.17
3214 6879 2.358247 CACCCACGCTACACCCAC 60.358 66.667 0.00 0.00 0.00 4.61
3215 6880 4.323477 GCACCCACGCTACACCCA 62.323 66.667 0.00 0.00 0.00 4.51
3216 6881 4.323477 TGCACCCACGCTACACCC 62.323 66.667 0.00 0.00 0.00 4.61
3217 6882 3.047877 GTGCACCCACGCTACACC 61.048 66.667 5.22 0.00 31.34 4.16
3218 6883 3.047877 GGTGCACCCACGCTACAC 61.048 66.667 26.31 0.00 43.00 2.90
3219 6884 4.673298 CGGTGCACCCACGCTACA 62.673 66.667 29.95 0.00 43.00 2.74
3220 6885 4.367023 TCGGTGCACCCACGCTAC 62.367 66.667 29.95 2.66 43.00 3.58
3221 6886 4.063967 CTCGGTGCACCCACGCTA 62.064 66.667 29.95 7.80 43.00 4.26
3228 6893 4.643387 AACCCAGCTCGGTGCACC 62.643 66.667 26.78 26.78 45.94 5.01
3229 6894 3.050275 GAACCCAGCTCGGTGCAC 61.050 66.667 8.80 8.80 45.94 4.57
3230 6895 3.535629 CTGAACCCAGCTCGGTGCA 62.536 63.158 11.17 11.17 45.94 4.57
3231 6896 2.743928 CTGAACCCAGCTCGGTGC 60.744 66.667 2.86 1.64 43.29 5.01
3239 6904 2.039084 AGAAAGTAGTGGCTGAACCCAG 59.961 50.000 0.00 0.00 43.22 4.45
3240 6905 2.038557 GAGAAAGTAGTGGCTGAACCCA 59.961 50.000 0.00 0.00 37.83 4.51
3241 6906 2.038557 TGAGAAAGTAGTGGCTGAACCC 59.961 50.000 0.00 0.00 37.83 4.11
3242 6907 3.402628 TGAGAAAGTAGTGGCTGAACC 57.597 47.619 0.00 0.00 39.84 3.62
3243 6908 5.703130 AGATTTGAGAAAGTAGTGGCTGAAC 59.297 40.000 0.00 0.00 0.00 3.18
3244 6909 5.702670 CAGATTTGAGAAAGTAGTGGCTGAA 59.297 40.000 0.00 0.00 0.00 3.02
3245 6910 5.012046 TCAGATTTGAGAAAGTAGTGGCTGA 59.988 40.000 0.00 0.00 0.00 4.26
3246 6911 5.240891 TCAGATTTGAGAAAGTAGTGGCTG 58.759 41.667 0.00 0.00 0.00 4.85
3247 6912 5.489792 TCAGATTTGAGAAAGTAGTGGCT 57.510 39.130 0.00 0.00 0.00 4.75
3259 6924 7.998753 AACAAAGCTTTTTCTCAGATTTGAG 57.001 32.000 9.53 6.92 46.16 3.02
3260 6925 8.137437 CCTAACAAAGCTTTTTCTCAGATTTGA 58.863 33.333 9.53 0.00 46.16 2.69
3262 6927 7.287696 TCCCTAACAAAGCTTTTTCTCAGATTT 59.712 33.333 9.53 0.00 29.89 2.17
3263 6928 6.777580 TCCCTAACAAAGCTTTTTCTCAGATT 59.222 34.615 9.53 0.00 0.00 2.40
3264 6929 6.306987 TCCCTAACAAAGCTTTTTCTCAGAT 58.693 36.000 9.53 0.00 0.00 2.90
3265 6930 5.690865 TCCCTAACAAAGCTTTTTCTCAGA 58.309 37.500 9.53 0.29 0.00 3.27
3266 6931 6.015940 ACATCCCTAACAAAGCTTTTTCTCAG 60.016 38.462 9.53 0.00 0.00 3.35
3267 6932 5.833131 ACATCCCTAACAAAGCTTTTTCTCA 59.167 36.000 9.53 0.00 0.00 3.27
3268 6933 6.016276 TGACATCCCTAACAAAGCTTTTTCTC 60.016 38.462 9.53 0.00 0.00 2.87
3269 6934 5.833131 TGACATCCCTAACAAAGCTTTTTCT 59.167 36.000 9.53 0.00 0.00 2.52
3270 6935 6.084326 TGACATCCCTAACAAAGCTTTTTC 57.916 37.500 9.53 0.00 0.00 2.29
3271 6936 6.478512 TTGACATCCCTAACAAAGCTTTTT 57.521 33.333 9.53 9.96 0.00 1.94
3272 6937 6.267471 TCATTGACATCCCTAACAAAGCTTTT 59.733 34.615 9.53 0.00 0.00 2.27
3273 6938 5.774690 TCATTGACATCCCTAACAAAGCTTT 59.225 36.000 5.69 5.69 0.00 3.51
3274 6939 5.324409 TCATTGACATCCCTAACAAAGCTT 58.676 37.500 0.00 0.00 0.00 3.74
3275 6940 4.922206 TCATTGACATCCCTAACAAAGCT 58.078 39.130 0.00 0.00 0.00 3.74
3276 6941 4.702131 ACTCATTGACATCCCTAACAAAGC 59.298 41.667 0.00 0.00 0.00 3.51
3277 6942 7.066284 CCTTACTCATTGACATCCCTAACAAAG 59.934 40.741 0.00 0.00 0.00 2.77
3278 6943 6.884295 CCTTACTCATTGACATCCCTAACAAA 59.116 38.462 0.00 0.00 0.00 2.83
3279 6944 6.012858 ACCTTACTCATTGACATCCCTAACAA 60.013 38.462 0.00 0.00 0.00 2.83
3280 6945 5.487488 ACCTTACTCATTGACATCCCTAACA 59.513 40.000 0.00 0.00 0.00 2.41
3281 6946 5.990668 ACCTTACTCATTGACATCCCTAAC 58.009 41.667 0.00 0.00 0.00 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.