Multiple sequence alignment - TraesCS4A01G233600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G233600 chr4A 100.000 2875 0 0 1 2875 542498165 542501039 0.000000e+00 5310
1 TraesCS4A01G233600 chr4A 82.849 344 25 15 2549 2875 542523551 542523877 7.850000e-71 278
2 TraesCS4A01G233600 chr4A 79.739 306 55 6 1168 1468 658351929 658352232 6.240000e-52 215
3 TraesCS4A01G233600 chr4A 79.868 303 54 6 1171 1468 658922415 658922115 6.240000e-52 215
4 TraesCS4A01G233600 chr4A 84.746 118 14 4 1762 1875 658413239 658413356 6.510000e-22 115
5 TraesCS4A01G233600 chr4A 89.011 91 10 0 1785 1875 658352392 658352482 2.340000e-21 113
6 TraesCS4A01G233600 chr4A 90.588 85 8 0 1791 1875 658921949 658921865 2.340000e-21 113
7 TraesCS4A01G233600 chr4B 86.343 2409 184 52 1 2336 80674424 80672088 0.000000e+00 2492
8 TraesCS4A01G233600 chr4B 87.429 350 20 10 2539 2873 80672103 80671763 5.810000e-102 381
9 TraesCS4A01G233600 chr4B 94.186 86 5 0 2455 2540 568365854 568365769 6.460000e-27 132
10 TraesCS4A01G233600 chr4D 87.846 2131 164 43 260 2336 54622875 54620786 0.000000e+00 2412
11 TraesCS4A01G233600 chr4D 90.313 351 17 4 2539 2875 54620801 54620454 7.310000e-121 444
12 TraesCS4A01G233600 chr4D 84.211 171 14 5 1196 1366 58631284 58631441 1.380000e-33 154
13 TraesCS4A01G233600 chr4D 94.186 86 5 0 2455 2540 418391580 418391665 6.460000e-27 132
14 TraesCS4A01G233600 chr7D 81.731 312 48 6 1166 1468 45759936 45760247 4.760000e-63 252
15 TraesCS4A01G233600 chr7D 89.011 91 9 1 1785 1875 45760468 45760557 8.420000e-21 111
16 TraesCS4A01G233600 chr2A 88.945 199 20 2 1170 1367 699381072 699380875 7.960000e-61 244
17 TraesCS4A01G233600 chr2A 87.591 137 17 0 2319 2455 523457894 523457758 2.970000e-35 159
18 TraesCS4A01G233600 chr5D 85.279 197 15 3 1170 1364 383079203 383079387 1.050000e-44 191
19 TraesCS4A01G233600 chr5D 94.186 86 5 0 2455 2540 532009435 532009350 6.460000e-27 132
20 TraesCS4A01G233600 chr5D 92.135 89 7 0 2452 2540 421658072 421658160 3.010000e-25 126
21 TraesCS4A01G233600 chr6B 91.406 128 11 0 2328 2455 233671704 233671577 2.940000e-40 176
22 TraesCS4A01G233600 chr5B 90.551 127 11 1 2330 2455 45553082 45552956 1.770000e-37 167
23 TraesCS4A01G233600 chr3A 88.722 133 14 1 1234 1366 737993403 737993272 8.240000e-36 161
24 TraesCS4A01G233600 chr3A 90.164 122 12 0 2334 2455 21472301 21472422 2.970000e-35 159
25 TraesCS4A01G233600 chr1B 89.683 126 13 0 2330 2455 456139141 456139266 8.240000e-36 161
26 TraesCS4A01G233600 chr1A 89.231 130 13 1 2326 2455 525024587 525024715 8.240000e-36 161
27 TraesCS4A01G233600 chr1A 87.097 124 16 0 1239 1362 45528004 45528127 1.070000e-29 141
28 TraesCS4A01G233600 chr1A 93.023 86 6 0 2455 2540 586707974 586707889 3.010000e-25 126
29 TraesCS4A01G233600 chr7B 88.148 135 14 2 2322 2455 134222318 134222451 2.970000e-35 159
30 TraesCS4A01G233600 chr3B 88.889 126 14 0 2330 2455 605272936 605273061 3.840000e-34 156
31 TraesCS4A01G233600 chr1D 88.976 127 13 1 2330 2455 455117593 455117467 3.840000e-34 156
32 TraesCS4A01G233600 chr7A 93.023 86 6 0 2455 2540 45063690 45063605 3.010000e-25 126
33 TraesCS4A01G233600 chr6A 93.023 86 6 0 2455 2540 48707643 48707728 3.010000e-25 126
34 TraesCS4A01G233600 chr6A 93.023 86 6 0 2455 2540 426260161 426260076 3.010000e-25 126
35 TraesCS4A01G233600 chr5A 93.023 86 6 0 2455 2540 580950955 580950870 3.010000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G233600 chr4A 542498165 542501039 2874 False 5310.0 5310 100.0000 1 2875 1 chr4A.!!$F1 2874
1 TraesCS4A01G233600 chr4B 80671763 80674424 2661 True 1436.5 2492 86.8860 1 2873 2 chr4B.!!$R2 2872
2 TraesCS4A01G233600 chr4D 54620454 54622875 2421 True 1428.0 2412 89.0795 260 2875 2 chr4D.!!$R1 2615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
345 347 0.103208 CAGAGCTCCGGCGTAGATTT 59.897 55.0 10.93 0.0 44.37 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2140 2221 0.031178 CAGCATTAGAAATGGCCGGC 59.969 55.0 21.18 21.18 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 1.323412 AGCACACCGTTGCCAATAAA 58.677 45.000 0.00 0.00 44.14 1.40
45 46 2.058057 GCACACCGTTGCCAATAAAAG 58.942 47.619 0.00 0.00 36.42 2.27
52 53 4.023193 ACCGTTGCCAATAAAAGAACTCAG 60.023 41.667 0.00 0.00 0.00 3.35
53 54 4.215399 CCGTTGCCAATAAAAGAACTCAGA 59.785 41.667 0.00 0.00 0.00 3.27
54 55 5.106157 CCGTTGCCAATAAAAGAACTCAGAT 60.106 40.000 0.00 0.00 0.00 2.90
86 87 8.449251 AAATTAGTGGTGCAAACATTTTTCAT 57.551 26.923 0.00 0.00 0.00 2.57
114 115 3.133003 TCTTTCAGGAGGCGATTAGAAGG 59.867 47.826 0.00 0.00 0.00 3.46
116 117 0.598680 CAGGAGGCGATTAGAAGGCG 60.599 60.000 0.00 0.00 38.03 5.52
121 122 2.586773 GCGATTAGAAGGCGGCGAC 61.587 63.158 12.98 8.50 0.00 5.19
137 139 1.677217 GCGACTGCTCCTTCCTTCAAT 60.677 52.381 0.00 0.00 38.39 2.57
139 141 1.742268 GACTGCTCCTTCCTTCAATGC 59.258 52.381 0.00 0.00 0.00 3.56
140 142 1.101331 CTGCTCCTTCCTTCAATGCC 58.899 55.000 0.00 0.00 0.00 4.40
148 150 2.676121 CTTCAATGCCCGGTGCCA 60.676 61.111 11.72 1.07 40.16 4.92
169 171 2.901042 CGTGTTCCCCTAGCCTCC 59.099 66.667 0.00 0.00 0.00 4.30
170 172 2.901042 GTGTTCCCCTAGCCTCCG 59.099 66.667 0.00 0.00 0.00 4.63
199 201 1.067749 CAGCAGCGAGAGGATGAGG 59.932 63.158 0.00 0.00 32.47 3.86
201 203 3.136750 CAGCGAGAGGATGAGGGG 58.863 66.667 0.00 0.00 32.47 4.79
203 205 1.456705 AGCGAGAGGATGAGGGGAC 60.457 63.158 0.00 0.00 0.00 4.46
223 225 1.271934 CCTCATATCTGAGCGTCTGGG 59.728 57.143 2.59 0.00 46.39 4.45
248 250 5.160607 TGTGGTGAAGGTAGGAATAGTTG 57.839 43.478 0.00 0.00 0.00 3.16
249 251 4.595781 TGTGGTGAAGGTAGGAATAGTTGT 59.404 41.667 0.00 0.00 0.00 3.32
264 266 8.887393 AGGAATAGTTGTAGGGTTTTTCTTCTA 58.113 33.333 0.00 0.00 0.00 2.10
277 279 6.594159 GGTTTTTCTTCTATTGTCGAGATGGA 59.406 38.462 0.00 0.00 0.00 3.41
287 289 0.673985 TCGAGATGGACTTATGGGCG 59.326 55.000 0.00 0.00 0.00 6.13
295 297 2.100879 GACTTATGGGCGCCGATCCT 62.101 60.000 28.30 11.06 0.00 3.24
306 308 1.598882 GCCGATCCTCCTTGAATTCC 58.401 55.000 2.27 0.00 0.00 3.01
315 317 3.118261 CCTCCTTGAATTCCTTCGATGGA 60.118 47.826 15.68 15.68 33.86 3.41
345 347 0.103208 CAGAGCTCCGGCGTAGATTT 59.897 55.000 10.93 0.00 44.37 2.17
401 403 2.577059 CCAGGCGTACACGATGGT 59.423 61.111 14.72 0.00 43.02 3.55
439 441 2.427095 TGCTTCAGATCGATTCGAAGGA 59.573 45.455 26.31 23.57 39.99 3.36
449 451 4.309933 TCGATTCGAAGGATCAATGATGG 58.690 43.478 6.24 0.00 31.06 3.51
458 460 1.402968 GATCAATGATGGCAACTGCGT 59.597 47.619 0.00 0.00 43.26 5.24
460 462 0.522626 CAATGATGGCAACTGCGTCA 59.477 50.000 9.80 9.80 43.26 4.35
461 463 1.133598 CAATGATGGCAACTGCGTCAT 59.866 47.619 12.67 12.67 43.79 3.06
491 493 0.179089 GTCTCTCGGAGCACATGCAT 60.179 55.000 6.64 0.00 45.16 3.96
494 496 0.466963 TCTCGGAGCACATGCATGAT 59.533 50.000 32.75 17.47 45.16 2.45
495 497 1.688197 TCTCGGAGCACATGCATGATA 59.312 47.619 32.75 8.57 45.16 2.15
496 498 2.067013 CTCGGAGCACATGCATGATAG 58.933 52.381 32.75 20.97 45.16 2.08
497 499 0.516001 CGGAGCACATGCATGATAGC 59.484 55.000 32.75 28.17 45.16 2.97
515 517 1.217511 CTGCTCAGCTGTCGTCCAT 59.782 57.895 14.67 0.00 0.00 3.41
554 556 1.874019 CGTCATCGGCTCGTTCTGG 60.874 63.158 0.00 0.00 0.00 3.86
565 567 2.260434 GTTCTGGCGACGGTAGCA 59.740 61.111 15.05 1.07 38.16 3.49
576 578 0.319297 ACGGTAGCAGTCGTTTGGTC 60.319 55.000 0.00 0.00 36.04 4.02
579 581 1.068333 GGTAGCAGTCGTTTGGTCGTA 60.068 52.381 0.00 0.00 0.00 3.43
590 592 3.568853 CGTTTGGTCGTATAGGGATCTCT 59.431 47.826 0.00 0.00 0.00 3.10
639 641 5.938125 TGCTTTGTAGATTCTGTAAACCCTC 59.062 40.000 0.00 0.00 0.00 4.30
671 673 9.958234 TTGAATTTGAATCAAGTCATTTTCGTA 57.042 25.926 10.80 0.00 33.15 3.43
672 674 9.958234 TGAATTTGAATCAAGTCATTTTCGTAA 57.042 25.926 7.18 0.00 0.00 3.18
716 718 7.959651 CGATAGAAAAGATATTTACAGCATGGC 59.040 37.037 0.00 0.00 38.95 4.40
742 744 2.181021 GTGACTAGGCCGGACACG 59.819 66.667 11.69 0.97 40.55 4.49
746 748 2.267681 GACTAGGCCGGACACGTCAG 62.268 65.000 20.39 7.56 38.78 3.51
748 750 1.994507 CTAGGCCGGACACGTCAGAG 61.995 65.000 11.69 0.00 38.78 3.35
799 801 0.247736 ACACTCGGCCAAGACTCATC 59.752 55.000 2.24 0.00 0.00 2.92
851 853 1.304879 GCAACAAGCCATACCCCCA 60.305 57.895 0.00 0.00 37.23 4.96
862 864 2.409975 CATACCCCCAGTATTAACGCG 58.590 52.381 3.53 3.53 39.79 6.01
893 895 2.363172 GGCCCACACTCCCTCTCTC 61.363 68.421 0.00 0.00 0.00 3.20
927 929 0.884704 TCCAGCAAAGCAACCGAGAC 60.885 55.000 0.00 0.00 0.00 3.36
1013 1040 2.202797 CACGATGTGGAGCTCCGG 60.203 66.667 27.43 15.64 39.43 5.14
1035 1062 4.176851 GACCTCGACGAGTCCGCC 62.177 72.222 22.61 4.16 39.95 6.13
1368 1425 2.124695 GTGGATCTGGGGTTCGGC 60.125 66.667 0.00 0.00 0.00 5.54
1447 1504 2.825836 CCATGAGCCAGCGGTTCC 60.826 66.667 0.00 0.00 31.76 3.62
1449 1506 1.817099 CATGAGCCAGCGGTTCCTC 60.817 63.158 8.46 4.73 31.76 3.71
1568 1625 1.222936 CCTGCCCTGGTAAGCTCAG 59.777 63.158 0.00 0.00 0.00 3.35
1581 1638 0.459489 AGCTCAGATTGCTCGACCTC 59.541 55.000 0.00 0.00 35.67 3.85
1582 1639 0.174389 GCTCAGATTGCTCGACCTCA 59.826 55.000 0.00 0.00 0.00 3.86
1583 1640 1.404717 GCTCAGATTGCTCGACCTCAA 60.405 52.381 0.00 0.00 0.00 3.02
1585 1642 3.491619 GCTCAGATTGCTCGACCTCAATA 60.492 47.826 3.62 0.00 33.49 1.90
1588 1645 4.342092 TCAGATTGCTCGACCTCAATATGA 59.658 41.667 16.86 16.86 43.99 2.15
1617 1674 0.526211 GCCCTCCGATGTGAAAAACC 59.474 55.000 0.00 0.00 0.00 3.27
1639 1696 2.404215 AGTCTGTTCGTTCAACATCGG 58.596 47.619 0.00 0.00 44.32 4.18
1654 1711 5.352293 TCAACATCGGTTCTTGATTCATCTG 59.648 40.000 0.00 0.00 34.21 2.90
1669 1726 7.724287 TGATTCATCTGAACTCTCTAGAATGG 58.276 38.462 0.00 0.00 36.80 3.16
1686 1743 1.838112 TGGCCAGTTCATGATTGGAC 58.162 50.000 23.85 22.24 40.58 4.02
1697 1754 6.438425 AGTTCATGATTGGACCAATTTAAGCT 59.562 34.615 20.71 11.84 33.90 3.74
1698 1755 7.615365 AGTTCATGATTGGACCAATTTAAGCTA 59.385 33.333 20.71 1.94 33.90 3.32
1699 1756 8.416329 GTTCATGATTGGACCAATTTAAGCTAT 58.584 33.333 20.71 0.00 33.90 2.97
1700 1757 9.639563 TTCATGATTGGACCAATTTAAGCTATA 57.360 29.630 20.71 1.03 33.90 1.31
1701 1758 9.639563 TCATGATTGGACCAATTTAAGCTATAA 57.360 29.630 20.71 0.00 33.90 0.98
1702 1759 9.683069 CATGATTGGACCAATTTAAGCTATAAC 57.317 33.333 20.71 4.42 33.90 1.89
1703 1760 8.232913 TGATTGGACCAATTTAAGCTATAACC 57.767 34.615 20.71 4.23 33.90 2.85
1704 1761 8.058847 TGATTGGACCAATTTAAGCTATAACCT 58.941 33.333 20.71 0.00 33.90 3.50
1720 1781 1.722011 ACCTACTGTTGATTTCCGCG 58.278 50.000 0.00 0.00 0.00 6.46
1725 1786 2.151202 ACTGTTGATTTCCGCGTCATT 58.849 42.857 4.92 0.00 0.00 2.57
1729 1790 3.120338 TGTTGATTTCCGCGTCATTCTTC 60.120 43.478 4.92 0.00 0.00 2.87
1744 1819 6.369005 GTCATTCTTCGATTGGATTGCTATG 58.631 40.000 0.00 0.00 0.00 2.23
1784 1859 7.814264 ATTGTTCTTCTCTCTTGATGTGTTT 57.186 32.000 0.00 0.00 0.00 2.83
1785 1860 6.609237 TGTTCTTCTCTCTTGATGTGTTTG 57.391 37.500 0.00 0.00 0.00 2.93
1786 1861 6.115446 TGTTCTTCTCTCTTGATGTGTTTGT 58.885 36.000 0.00 0.00 0.00 2.83
1787 1862 6.599244 TGTTCTTCTCTCTTGATGTGTTTGTT 59.401 34.615 0.00 0.00 0.00 2.83
1898 1977 1.024046 CCGCACCGTCAATCAATCCA 61.024 55.000 0.00 0.00 0.00 3.41
1899 1978 1.016627 CGCACCGTCAATCAATCCAT 58.983 50.000 0.00 0.00 0.00 3.41
1901 1980 1.334869 GCACCGTCAATCAATCCATCC 59.665 52.381 0.00 0.00 0.00 3.51
1902 1981 1.949525 CACCGTCAATCAATCCATCCC 59.050 52.381 0.00 0.00 0.00 3.85
1903 1982 1.563879 ACCGTCAATCAATCCATCCCA 59.436 47.619 0.00 0.00 0.00 4.37
1904 1983 1.949525 CCGTCAATCAATCCATCCCAC 59.050 52.381 0.00 0.00 0.00 4.61
1905 1984 2.642427 CGTCAATCAATCCATCCCACA 58.358 47.619 0.00 0.00 0.00 4.17
1910 1989 1.567357 TCAATCCATCCCACAGACGA 58.433 50.000 0.00 0.00 0.00 4.20
1971 2050 2.175878 ATTCATCAGGCGACCTATGC 57.824 50.000 0.00 0.00 29.64 3.14
2050 2129 1.004610 CATCGCCATCATCACGACAAC 60.005 52.381 0.00 0.00 38.85 3.32
2051 2130 0.037790 TCGCCATCATCACGACAACA 60.038 50.000 0.00 0.00 0.00 3.33
2054 2133 1.466360 GCCATCATCACGACAACAAGC 60.466 52.381 0.00 0.00 0.00 4.01
2056 2135 2.159612 CCATCATCACGACAACAAGCAG 60.160 50.000 0.00 0.00 0.00 4.24
2057 2136 2.524569 TCATCACGACAACAAGCAGA 57.475 45.000 0.00 0.00 0.00 4.26
2124 2205 6.997267 CTGATGACAGGAAGCGATGAAGCT 62.997 50.000 0.00 0.00 43.65 3.74
2140 2221 1.112315 AGCTAGCCAGGAGGATGTCG 61.112 60.000 12.13 0.00 36.89 4.35
2210 2294 2.997485 ATTTCCGTTCAGAAGCAAGC 57.003 45.000 0.00 0.00 0.00 4.01
2223 2309 4.272991 CAGAAGCAAGCACTATGAATCCTC 59.727 45.833 0.00 0.00 0.00 3.71
2228 2314 3.951775 AGCACTATGAATCCTCGATCC 57.048 47.619 0.00 0.00 0.00 3.36
2229 2315 3.234353 AGCACTATGAATCCTCGATCCA 58.766 45.455 0.00 0.00 0.00 3.41
2230 2316 3.643320 AGCACTATGAATCCTCGATCCAA 59.357 43.478 0.00 0.00 0.00 3.53
2232 2318 4.816385 GCACTATGAATCCTCGATCCAAAA 59.184 41.667 0.00 0.00 0.00 2.44
2237 2323 4.002982 TGAATCCTCGATCCAAAACTGTG 58.997 43.478 0.00 0.00 0.00 3.66
2243 2329 3.745799 TCGATCCAAAACTGTGGCTAAA 58.254 40.909 0.00 0.00 38.68 1.85
2285 2375 9.817365 GACAATATTGTATTCTCAATTCATCGG 57.183 33.333 20.83 0.00 42.43 4.18
2286 2376 9.559732 ACAATATTGTATTCTCAATTCATCGGA 57.440 29.630 19.51 0.00 40.16 4.55
2321 2412 0.108898 GATCTCGTGCTGAGCTGTGT 60.109 55.000 5.83 0.00 44.86 3.72
2322 2413 0.389556 ATCTCGTGCTGAGCTGTGTG 60.390 55.000 5.83 0.00 44.86 3.82
2323 2414 2.662857 TCGTGCTGAGCTGTGTGC 60.663 61.111 5.83 0.00 43.29 4.57
2324 2415 3.720193 CGTGCTGAGCTGTGTGCC 61.720 66.667 5.83 0.00 44.23 5.01
2325 2416 2.281345 GTGCTGAGCTGTGTGCCT 60.281 61.111 5.83 0.00 44.23 4.75
2326 2417 1.895707 GTGCTGAGCTGTGTGCCTT 60.896 57.895 5.83 0.00 44.23 4.35
2327 2418 1.152902 TGCTGAGCTGTGTGCCTTT 60.153 52.632 5.83 0.00 44.23 3.11
2328 2419 1.285023 GCTGAGCTGTGTGCCTTTG 59.715 57.895 0.00 0.00 44.23 2.77
2329 2420 1.450531 GCTGAGCTGTGTGCCTTTGT 61.451 55.000 0.00 0.00 44.23 2.83
2330 2421 1.027357 CTGAGCTGTGTGCCTTTGTT 58.973 50.000 0.00 0.00 44.23 2.83
2331 2422 1.406539 CTGAGCTGTGTGCCTTTGTTT 59.593 47.619 0.00 0.00 44.23 2.83
2332 2423 1.405105 TGAGCTGTGTGCCTTTGTTTC 59.595 47.619 0.00 0.00 44.23 2.78
2333 2424 1.678101 GAGCTGTGTGCCTTTGTTTCT 59.322 47.619 0.00 0.00 44.23 2.52
2334 2425 2.099756 GAGCTGTGTGCCTTTGTTTCTT 59.900 45.455 0.00 0.00 44.23 2.52
2335 2426 2.497273 AGCTGTGTGCCTTTGTTTCTTT 59.503 40.909 0.00 0.00 44.23 2.52
2336 2427 3.699038 AGCTGTGTGCCTTTGTTTCTTTA 59.301 39.130 0.00 0.00 44.23 1.85
2337 2428 3.796717 GCTGTGTGCCTTTGTTTCTTTAC 59.203 43.478 0.00 0.00 35.15 2.01
2338 2429 4.359706 CTGTGTGCCTTTGTTTCTTTACC 58.640 43.478 0.00 0.00 0.00 2.85
2339 2430 3.764434 TGTGTGCCTTTGTTTCTTTACCA 59.236 39.130 0.00 0.00 0.00 3.25
2340 2431 4.404073 TGTGTGCCTTTGTTTCTTTACCAT 59.596 37.500 0.00 0.00 0.00 3.55
2341 2432 4.982295 GTGTGCCTTTGTTTCTTTACCATC 59.018 41.667 0.00 0.00 0.00 3.51
2342 2433 4.646945 TGTGCCTTTGTTTCTTTACCATCA 59.353 37.500 0.00 0.00 0.00 3.07
2343 2434 5.221224 TGTGCCTTTGTTTCTTTACCATCAG 60.221 40.000 0.00 0.00 0.00 2.90
2344 2435 4.892934 TGCCTTTGTTTCTTTACCATCAGT 59.107 37.500 0.00 0.00 0.00 3.41
2345 2436 6.016610 GTGCCTTTGTTTCTTTACCATCAGTA 60.017 38.462 0.00 0.00 0.00 2.74
2346 2437 6.016610 TGCCTTTGTTTCTTTACCATCAGTAC 60.017 38.462 0.00 0.00 0.00 2.73
2347 2438 6.016610 GCCTTTGTTTCTTTACCATCAGTACA 60.017 38.462 0.00 0.00 0.00 2.90
2348 2439 7.584987 CCTTTGTTTCTTTACCATCAGTACAG 58.415 38.462 0.00 0.00 31.12 2.74
2349 2440 7.444183 CCTTTGTTTCTTTACCATCAGTACAGA 59.556 37.037 0.00 0.00 36.25 3.41
2350 2441 7.724305 TTGTTTCTTTACCATCAGTACAGAC 57.276 36.000 0.00 0.00 37.46 3.51
2351 2442 6.822442 TGTTTCTTTACCATCAGTACAGACA 58.178 36.000 0.00 0.00 37.46 3.41
2352 2443 6.704493 TGTTTCTTTACCATCAGTACAGACAC 59.296 38.462 0.00 0.00 37.46 3.67
2353 2444 6.413783 TTCTTTACCATCAGTACAGACACA 57.586 37.500 0.00 0.00 37.46 3.72
2354 2445 6.413783 TCTTTACCATCAGTACAGACACAA 57.586 37.500 0.00 0.00 33.71 3.33
2355 2446 6.455647 TCTTTACCATCAGTACAGACACAAG 58.544 40.000 0.00 0.00 33.71 3.16
2356 2447 3.045601 ACCATCAGTACAGACACAAGC 57.954 47.619 0.00 0.00 0.00 4.01
2357 2448 1.995484 CCATCAGTACAGACACAAGCG 59.005 52.381 0.00 0.00 0.00 4.68
2358 2449 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
2359 2450 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
2360 2451 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
2361 2452 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
2362 2453 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
2363 2454 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
2364 2455 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
2365 2456 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
2366 2457 3.448686 ACAGACACAAGCGCTCATATAC 58.551 45.455 12.06 1.00 0.00 1.47
2367 2458 3.119137 ACAGACACAAGCGCTCATATACA 60.119 43.478 12.06 0.00 0.00 2.29
2368 2459 3.243877 CAGACACAAGCGCTCATATACAC 59.756 47.826 12.06 0.00 0.00 2.90
2369 2460 3.119137 AGACACAAGCGCTCATATACACA 60.119 43.478 12.06 0.00 0.00 3.72
2370 2461 2.930040 ACACAAGCGCTCATATACACAC 59.070 45.455 12.06 0.00 0.00 3.82
2371 2462 2.034591 CACAAGCGCTCATATACACACG 60.035 50.000 12.06 0.00 0.00 4.49
2372 2463 1.071239 CAAGCGCTCATATACACACGC 60.071 52.381 12.06 0.00 46.20 5.34
2373 2464 2.588731 GCGCTCATATACACACGCA 58.411 52.632 0.00 0.00 45.25 5.24
2374 2465 1.139989 GCGCTCATATACACACGCAT 58.860 50.000 0.00 0.00 45.25 4.73
2375 2466 2.324860 GCGCTCATATACACACGCATA 58.675 47.619 0.00 0.00 45.25 3.14
2376 2467 2.090658 GCGCTCATATACACACGCATAC 59.909 50.000 0.00 0.00 45.25 2.39
2377 2468 3.305110 CGCTCATATACACACGCATACA 58.695 45.455 0.00 0.00 0.00 2.29
2378 2469 3.119628 CGCTCATATACACACGCATACAC 59.880 47.826 0.00 0.00 0.00 2.90
2379 2470 4.299155 GCTCATATACACACGCATACACT 58.701 43.478 0.00 0.00 0.00 3.55
2380 2471 4.383052 GCTCATATACACACGCATACACTC 59.617 45.833 0.00 0.00 0.00 3.51
2381 2472 5.508200 TCATATACACACGCATACACTCA 57.492 39.130 0.00 0.00 0.00 3.41
2382 2473 5.278604 TCATATACACACGCATACACTCAC 58.721 41.667 0.00 0.00 0.00 3.51
2383 2474 2.357327 TACACACGCATACACTCACC 57.643 50.000 0.00 0.00 0.00 4.02
2384 2475 0.320421 ACACACGCATACACTCACCC 60.320 55.000 0.00 0.00 0.00 4.61
2385 2476 1.019278 CACACGCATACACTCACCCC 61.019 60.000 0.00 0.00 0.00 4.95
2386 2477 1.192146 ACACGCATACACTCACCCCT 61.192 55.000 0.00 0.00 0.00 4.79
2387 2478 0.821517 CACGCATACACTCACCCCTA 59.178 55.000 0.00 0.00 0.00 3.53
2388 2479 1.412710 CACGCATACACTCACCCCTAT 59.587 52.381 0.00 0.00 0.00 2.57
2389 2480 1.412710 ACGCATACACTCACCCCTATG 59.587 52.381 0.00 0.00 0.00 2.23
2390 2481 1.686587 CGCATACACTCACCCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
2391 2482 2.102420 CGCATACACTCACCCCTATGAA 59.898 50.000 0.00 0.00 0.00 2.57
2392 2483 3.467803 GCATACACTCACCCCTATGAAC 58.532 50.000 0.00 0.00 0.00 3.18
2393 2484 3.717707 CATACACTCACCCCTATGAACG 58.282 50.000 0.00 0.00 0.00 3.95
2394 2485 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
2395 2486 0.249120 CACTCACCCCTATGAACGCA 59.751 55.000 0.00 0.00 0.00 5.24
2396 2487 0.249398 ACTCACCCCTATGAACGCAC 59.751 55.000 0.00 0.00 0.00 5.34
2397 2488 0.249120 CTCACCCCTATGAACGCACA 59.751 55.000 0.00 0.00 0.00 4.57
2398 2489 0.036765 TCACCCCTATGAACGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
2399 2490 1.024579 CACCCCTATGAACGCACACC 61.025 60.000 0.00 0.00 0.00 4.16
2400 2491 1.451387 CCCCTATGAACGCACACCC 60.451 63.158 0.00 0.00 0.00 4.61
2401 2492 1.602237 CCCTATGAACGCACACCCT 59.398 57.895 0.00 0.00 0.00 4.34
2402 2493 0.828022 CCCTATGAACGCACACCCTA 59.172 55.000 0.00 0.00 0.00 3.53
2403 2494 1.472728 CCCTATGAACGCACACCCTAC 60.473 57.143 0.00 0.00 0.00 3.18
2404 2495 1.472728 CCTATGAACGCACACCCTACC 60.473 57.143 0.00 0.00 0.00 3.18
2405 2496 0.538118 TATGAACGCACACCCTACCC 59.462 55.000 0.00 0.00 0.00 3.69
2406 2497 2.046604 GAACGCACACCCTACCCC 60.047 66.667 0.00 0.00 0.00 4.95
2407 2498 2.528378 AACGCACACCCTACCCCT 60.528 61.111 0.00 0.00 0.00 4.79
2408 2499 1.229272 AACGCACACCCTACCCCTA 60.229 57.895 0.00 0.00 0.00 3.53
2409 2500 0.619543 AACGCACACCCTACCCCTAT 60.620 55.000 0.00 0.00 0.00 2.57
2410 2501 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
2411 2502 1.046472 CGCACACCCTACCCCTATGA 61.046 60.000 0.00 0.00 0.00 2.15
2412 2503 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
2413 2504 1.970226 GCACACCCTACCCCTATGAGT 60.970 57.143 0.00 0.00 0.00 3.41
2414 2505 2.691850 GCACACCCTACCCCTATGAGTA 60.692 54.545 0.00 0.00 0.00 2.59
2415 2506 3.858135 CACACCCTACCCCTATGAGTAT 58.142 50.000 0.00 0.00 0.00 2.12
2416 2507 3.833070 CACACCCTACCCCTATGAGTATC 59.167 52.174 0.00 0.00 0.00 2.24
2417 2508 3.733281 ACACCCTACCCCTATGAGTATCT 59.267 47.826 0.00 0.00 34.92 1.98
2418 2509 4.090090 CACCCTACCCCTATGAGTATCTG 58.910 52.174 0.00 0.00 34.92 2.90
2419 2510 3.733281 ACCCTACCCCTATGAGTATCTGT 59.267 47.826 0.00 0.00 34.92 3.41
2420 2511 4.090090 CCCTACCCCTATGAGTATCTGTG 58.910 52.174 0.00 0.00 34.92 3.66
2421 2512 4.202684 CCCTACCCCTATGAGTATCTGTGA 60.203 50.000 0.00 0.00 34.92 3.58
2422 2513 5.519263 CCCTACCCCTATGAGTATCTGTGAT 60.519 48.000 0.00 0.00 34.92 3.06
2423 2514 6.297653 CCCTACCCCTATGAGTATCTGTGATA 60.298 46.154 0.00 0.00 34.92 2.15
2424 2515 6.831353 CCTACCCCTATGAGTATCTGTGATAG 59.169 46.154 0.00 0.00 34.92 2.08
2425 2516 6.470456 ACCCCTATGAGTATCTGTGATAGA 57.530 41.667 0.00 0.00 40.37 1.98
2426 2517 6.249951 ACCCCTATGAGTATCTGTGATAGAC 58.750 44.000 0.00 0.00 38.49 2.59
2427 2518 6.046168 ACCCCTATGAGTATCTGTGATAGACT 59.954 42.308 0.00 0.00 38.49 3.24
2428 2519 7.239984 ACCCCTATGAGTATCTGTGATAGACTA 59.760 40.741 0.00 0.00 38.49 2.59
2429 2520 8.110271 CCCCTATGAGTATCTGTGATAGACTAA 58.890 40.741 0.00 0.00 38.49 2.24
2430 2521 9.173021 CCCTATGAGTATCTGTGATAGACTAAG 57.827 40.741 0.00 0.00 38.49 2.18
2431 2522 8.673711 CCTATGAGTATCTGTGATAGACTAAGC 58.326 40.741 0.00 0.00 38.49 3.09
2432 2523 6.885952 TGAGTATCTGTGATAGACTAAGCC 57.114 41.667 0.00 0.00 38.49 4.35
2433 2524 5.470437 TGAGTATCTGTGATAGACTAAGCCG 59.530 44.000 0.00 0.00 38.49 5.52
2434 2525 5.622180 AGTATCTGTGATAGACTAAGCCGA 58.378 41.667 0.00 0.00 38.49 5.54
2435 2526 4.839668 ATCTGTGATAGACTAAGCCGAC 57.160 45.455 0.00 0.00 38.49 4.79
2436 2527 3.617284 TCTGTGATAGACTAAGCCGACA 58.383 45.455 0.00 0.00 0.00 4.35
2437 2528 4.207955 TCTGTGATAGACTAAGCCGACAT 58.792 43.478 0.00 0.00 0.00 3.06
2438 2529 5.374071 TCTGTGATAGACTAAGCCGACATA 58.626 41.667 0.00 0.00 0.00 2.29
2439 2530 5.826208 TCTGTGATAGACTAAGCCGACATAA 59.174 40.000 0.00 0.00 0.00 1.90
2440 2531 5.828747 TGTGATAGACTAAGCCGACATAAC 58.171 41.667 0.00 0.00 0.00 1.89
2441 2532 5.358725 TGTGATAGACTAAGCCGACATAACA 59.641 40.000 0.00 0.00 0.00 2.41
2442 2533 6.040504 TGTGATAGACTAAGCCGACATAACAT 59.959 38.462 0.00 0.00 0.00 2.71
2443 2534 6.583050 GTGATAGACTAAGCCGACATAACATC 59.417 42.308 0.00 0.00 0.00 3.06
2444 2535 6.490381 TGATAGACTAAGCCGACATAACATCT 59.510 38.462 0.00 0.00 0.00 2.90
2445 2536 5.599999 AGACTAAGCCGACATAACATCTT 57.400 39.130 0.00 0.00 0.00 2.40
2446 2537 5.352284 AGACTAAGCCGACATAACATCTTG 58.648 41.667 0.00 0.00 0.00 3.02
2447 2538 5.127194 AGACTAAGCCGACATAACATCTTGA 59.873 40.000 0.00 0.00 0.00 3.02
2448 2539 5.352284 ACTAAGCCGACATAACATCTTGAG 58.648 41.667 0.00 0.00 0.00 3.02
2449 2540 4.471904 AAGCCGACATAACATCTTGAGA 57.528 40.909 0.00 0.00 0.00 3.27
2450 2541 4.679373 AGCCGACATAACATCTTGAGAT 57.321 40.909 0.00 0.00 34.56 2.75
2451 2542 5.028549 AGCCGACATAACATCTTGAGATT 57.971 39.130 0.00 0.00 31.21 2.40
2452 2543 5.431765 AGCCGACATAACATCTTGAGATTT 58.568 37.500 0.00 0.00 31.21 2.17
2453 2544 6.582636 AGCCGACATAACATCTTGAGATTTA 58.417 36.000 0.00 0.00 31.21 1.40
2454 2545 6.480320 AGCCGACATAACATCTTGAGATTTAC 59.520 38.462 0.00 0.00 31.21 2.01
2455 2546 6.480320 GCCGACATAACATCTTGAGATTTACT 59.520 38.462 0.00 0.00 31.21 2.24
2456 2547 7.652105 GCCGACATAACATCTTGAGATTTACTA 59.348 37.037 0.00 0.00 31.21 1.82
2457 2548 9.698309 CCGACATAACATCTTGAGATTTACTAT 57.302 33.333 0.00 0.00 31.21 2.12
2463 2554 8.430801 AACATCTTGAGATTTACTATGAGCAC 57.569 34.615 0.00 0.00 31.21 4.40
2464 2555 6.989169 ACATCTTGAGATTTACTATGAGCACC 59.011 38.462 0.00 0.00 31.21 5.01
2465 2556 6.798427 TCTTGAGATTTACTATGAGCACCT 57.202 37.500 0.00 0.00 0.00 4.00
2466 2557 7.187824 TCTTGAGATTTACTATGAGCACCTT 57.812 36.000 0.00 0.00 0.00 3.50
2467 2558 7.268586 TCTTGAGATTTACTATGAGCACCTTC 58.731 38.462 0.00 0.00 0.00 3.46
2468 2559 5.592054 TGAGATTTACTATGAGCACCTTCG 58.408 41.667 0.00 0.00 0.00 3.79
2469 2560 5.359860 TGAGATTTACTATGAGCACCTTCGA 59.640 40.000 0.00 0.00 0.00 3.71
2470 2561 6.040955 TGAGATTTACTATGAGCACCTTCGAT 59.959 38.462 0.00 0.00 0.00 3.59
2471 2562 7.230712 TGAGATTTACTATGAGCACCTTCGATA 59.769 37.037 0.00 0.00 0.00 2.92
2472 2563 7.598278 AGATTTACTATGAGCACCTTCGATAG 58.402 38.462 0.00 0.00 0.00 2.08
2488 2579 5.798015 TCGATAGACTAAGCCGACATATC 57.202 43.478 0.00 0.00 42.67 1.63
2489 2580 5.243207 TCGATAGACTAAGCCGACATATCA 58.757 41.667 0.00 0.00 42.67 2.15
2490 2581 5.880887 TCGATAGACTAAGCCGACATATCAT 59.119 40.000 0.00 0.00 42.67 2.45
2491 2582 6.037281 TCGATAGACTAAGCCGACATATCATC 59.963 42.308 0.00 0.00 42.67 2.92
2492 2583 6.037720 CGATAGACTAAGCCGACATATCATCT 59.962 42.308 0.00 0.00 39.76 2.90
2493 2584 7.414651 CGATAGACTAAGCCGACATATCATCTT 60.415 40.741 0.00 0.00 39.76 2.40
2494 2585 5.777802 AGACTAAGCCGACATATCATCTTG 58.222 41.667 0.00 0.00 0.00 3.02
2495 2586 5.536538 AGACTAAGCCGACATATCATCTTGA 59.463 40.000 0.00 0.00 0.00 3.02
2496 2587 5.777802 ACTAAGCCGACATATCATCTTGAG 58.222 41.667 0.00 0.00 0.00 3.02
2497 2588 4.944619 AAGCCGACATATCATCTTGAGA 57.055 40.909 0.00 0.00 0.00 3.27
2498 2589 5.480642 AAGCCGACATATCATCTTGAGAT 57.519 39.130 0.00 0.00 34.56 2.75
2499 2590 5.480642 AGCCGACATATCATCTTGAGATT 57.519 39.130 0.00 0.00 31.21 2.40
2500 2591 5.862845 AGCCGACATATCATCTTGAGATTT 58.137 37.500 0.00 0.00 31.21 2.17
2501 2592 6.997655 AGCCGACATATCATCTTGAGATTTA 58.002 36.000 0.00 0.00 31.21 1.40
2502 2593 6.870965 AGCCGACATATCATCTTGAGATTTAC 59.129 38.462 0.00 0.00 31.21 2.01
2503 2594 6.183360 GCCGACATATCATCTTGAGATTTACG 60.183 42.308 0.00 0.00 31.21 3.18
2504 2595 7.084486 CCGACATATCATCTTGAGATTTACGA 58.916 38.462 0.00 0.00 31.21 3.43
2505 2596 7.595130 CCGACATATCATCTTGAGATTTACGAA 59.405 37.037 0.00 0.00 31.21 3.85
2506 2597 8.634265 CGACATATCATCTTGAGATTTACGAAG 58.366 37.037 0.00 0.00 31.21 3.79
2507 2598 9.469807 GACATATCATCTTGAGATTTACGAAGT 57.530 33.333 0.00 0.00 37.29 3.01
2508 2599 9.469807 ACATATCATCTTGAGATTTACGAAGTC 57.530 33.333 0.00 0.00 35.39 3.01
2509 2600 9.468532 CATATCATCTTGAGATTTACGAAGTCA 57.531 33.333 0.00 0.00 35.39 3.41
2511 2602 7.993821 TCATCTTGAGATTTACGAAGTCATC 57.006 36.000 0.00 0.00 35.39 2.92
2512 2603 7.547227 TCATCTTGAGATTTACGAAGTCATCA 58.453 34.615 0.00 0.00 35.39 3.07
2513 2604 8.200120 TCATCTTGAGATTTACGAAGTCATCAT 58.800 33.333 0.00 0.00 35.39 2.45
2514 2605 9.468532 CATCTTGAGATTTACGAAGTCATCATA 57.531 33.333 0.00 0.00 35.39 2.15
2515 2606 9.689976 ATCTTGAGATTTACGAAGTCATCATAG 57.310 33.333 0.00 0.00 43.93 2.23
2516 2607 8.903820 TCTTGAGATTTACGAAGTCATCATAGA 58.096 33.333 0.00 0.00 43.93 1.98
2517 2608 8.858003 TTGAGATTTACGAAGTCATCATAGAC 57.142 34.615 0.00 0.00 43.93 2.59
2518 2609 7.132863 TGAGATTTACGAAGTCATCATAGACG 58.867 38.462 0.00 0.00 43.93 4.18
2519 2610 5.915758 AGATTTACGAAGTCATCATAGACGC 59.084 40.000 0.00 0.00 43.93 5.19
2520 2611 2.493713 ACGAAGTCATCATAGACGCC 57.506 50.000 0.00 0.00 43.24 5.68
2521 2612 2.025155 ACGAAGTCATCATAGACGCCT 58.975 47.619 0.00 0.00 43.24 5.52
2522 2613 2.033550 ACGAAGTCATCATAGACGCCTC 59.966 50.000 0.00 0.00 43.24 4.70
2523 2614 2.656085 GAAGTCATCATAGACGCCTCG 58.344 52.381 0.00 0.00 43.24 4.63
2524 2615 1.681538 AGTCATCATAGACGCCTCGT 58.318 50.000 0.00 0.00 45.10 4.18
2565 2656 5.783169 GCTTTGTTTGTTTTCTTTTGTGTCG 59.217 36.000 0.00 0.00 0.00 4.35
2637 2728 0.713883 CGGACGAAATCAACTGACCG 59.286 55.000 0.00 0.00 0.00 4.79
2674 2765 9.869757 GAGGTGTTAAAATAACATTTATGCCTT 57.130 29.630 6.26 0.00 32.23 4.35
2682 2773 3.848272 ACATTTATGCCTTGTTCACCG 57.152 42.857 0.00 0.00 0.00 4.94
2716 2807 8.279800 CCTAATCATCACGCGATTGTTTTATTA 58.720 33.333 15.93 5.54 34.89 0.98
2718 2809 8.547091 AATCATCACGCGATTGTTTTATTAAG 57.453 30.769 15.93 0.00 31.90 1.85
2719 2810 5.963004 TCATCACGCGATTGTTTTATTAAGC 59.037 36.000 15.93 0.00 0.00 3.09
2722 2813 4.637661 CGCGATTGTTTTATTAAGCGTG 57.362 40.909 0.00 0.00 41.23 5.34
2724 2815 4.654015 GCGATTGTTTTATTAAGCGTGGA 58.346 39.130 0.00 0.00 37.91 4.02
2725 2816 4.728608 GCGATTGTTTTATTAAGCGTGGAG 59.271 41.667 0.00 0.00 37.91 3.86
2766 2858 1.643286 TCTGACCTGAGATCTGGAGGT 59.357 52.381 19.02 19.02 43.06 3.85
2771 2863 1.134461 CCTGAGATCTGGAGGTTGCAG 60.134 57.143 0.00 0.00 37.15 4.41
2806 2911 2.733956 AGTTGGCTGGTCAGAAAACAA 58.266 42.857 14.31 6.44 31.65 2.83
2847 2952 2.961741 TGCAGCTAGATTCCTACTCCTG 59.038 50.000 0.00 0.00 0.00 3.86
2853 2958 2.028130 AGATTCCTACTCCTGCGACTG 58.972 52.381 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.543848 GCTAAAGCAACCCAAAAAGCAC 59.456 45.455 0.00 0.00 41.59 4.40
31 32 5.356882 TCTGAGTTCTTTTATTGGCAACG 57.643 39.130 0.00 0.00 42.51 4.10
71 72 6.418057 AGAACCCTATGAAAAATGTTTGCA 57.582 33.333 0.00 0.00 0.00 4.08
86 87 0.902531 CGCCTCCTGAAAGAACCCTA 59.097 55.000 0.00 0.00 34.07 3.53
116 117 1.448717 GAAGGAAGGAGCAGTCGCC 60.449 63.158 0.00 0.00 39.83 5.54
121 122 1.101331 GGCATTGAAGGAAGGAGCAG 58.899 55.000 0.00 0.00 0.00 4.24
148 150 4.078516 GCTAGGGGAACACGCGGT 62.079 66.667 12.47 2.05 37.07 5.68
152 154 2.901042 GGAGGCTAGGGGAACACG 59.099 66.667 0.00 0.00 0.00 4.49
154 156 1.684734 GACGGAGGCTAGGGGAACA 60.685 63.158 0.00 0.00 0.00 3.18
180 182 1.592131 CTCATCCTCTCGCTGCTGC 60.592 63.158 5.34 5.34 0.00 5.25
185 187 1.456705 GTCCCCTCATCCTCTCGCT 60.457 63.158 0.00 0.00 0.00 4.93
187 189 1.231641 AGGTCCCCTCATCCTCTCG 59.768 63.158 0.00 0.00 0.00 4.04
199 201 1.271102 GACGCTCAGATATGAGGTCCC 59.729 57.143 18.59 1.39 36.49 4.46
201 203 2.030363 CCAGACGCTCAGATATGAGGTC 60.030 54.545 21.59 21.59 36.88 3.85
203 205 1.271934 CCCAGACGCTCAGATATGAGG 59.728 57.143 18.59 11.07 36.49 3.86
223 225 5.557866 ACTATTCCTACCTTCACCACAAAC 58.442 41.667 0.00 0.00 0.00 2.93
248 250 7.095270 TCTCGACAATAGAAGAAAAACCCTAC 58.905 38.462 0.00 0.00 0.00 3.18
249 251 7.235935 TCTCGACAATAGAAGAAAAACCCTA 57.764 36.000 0.00 0.00 0.00 3.53
264 266 3.495100 GCCCATAAGTCCATCTCGACAAT 60.495 47.826 0.00 0.00 35.07 2.71
266 268 1.412710 GCCCATAAGTCCATCTCGACA 59.587 52.381 0.00 0.00 35.07 4.35
277 279 2.100879 GAGGATCGGCGCCCATAAGT 62.101 60.000 23.46 0.74 0.00 2.24
287 289 1.141858 AGGAATTCAAGGAGGATCGGC 59.858 52.381 7.93 0.00 34.37 5.54
295 297 4.568072 TTCCATCGAAGGAATTCAAGGA 57.432 40.909 17.81 0.00 42.56 3.36
315 317 2.223829 CCGGAGCTCTGTCGATTACATT 60.224 50.000 21.06 0.00 37.50 2.71
317 319 0.738975 CCGGAGCTCTGTCGATTACA 59.261 55.000 21.06 0.00 36.42 2.41
327 329 0.824759 AAAATCTACGCCGGAGCTCT 59.175 50.000 14.64 0.00 36.60 4.09
345 347 0.039798 CGTTCCGAGGAGACGACAAA 60.040 55.000 16.23 0.00 38.99 2.83
366 368 2.650116 GCGAGAAGCCCTGACCTCA 61.650 63.158 0.00 0.00 40.81 3.86
367 369 2.185608 GCGAGAAGCCCTGACCTC 59.814 66.667 0.00 0.00 40.81 3.85
396 398 5.163814 GCACTTGACACTAGAATTCACCATC 60.164 44.000 8.44 0.00 0.00 3.51
401 403 5.610398 TGAAGCACTTGACACTAGAATTCA 58.390 37.500 8.44 0.00 0.00 2.57
402 404 5.928839 TCTGAAGCACTTGACACTAGAATTC 59.071 40.000 0.00 0.00 0.00 2.17
409 411 2.297315 TCGATCTGAAGCACTTGACACT 59.703 45.455 0.00 0.00 0.00 3.55
439 441 1.466856 ACGCAGTTGCCATCATTGAT 58.533 45.000 0.00 0.00 37.78 2.57
458 460 0.611062 AGAGACCAACGTCCCGATGA 60.611 55.000 0.00 0.00 40.12 2.92
460 462 1.654954 CGAGAGACCAACGTCCCGAT 61.655 60.000 0.00 0.00 40.12 4.18
461 463 2.330372 CGAGAGACCAACGTCCCGA 61.330 63.158 0.00 0.00 40.12 5.14
469 471 0.247460 CATGTGCTCCGAGAGACCAA 59.753 55.000 0.00 0.00 0.00 3.67
497 499 0.457443 TATGGACGACAGCTGAGCAG 59.543 55.000 23.35 10.60 0.00 4.24
513 515 0.446222 CGTTGTTGCCGGACCTTATG 59.554 55.000 5.05 0.00 0.00 1.90
515 517 0.600782 GTCGTTGTTGCCGGACCTTA 60.601 55.000 5.05 0.00 0.00 2.69
557 559 0.319297 GACCAAACGACTGCTACCGT 60.319 55.000 0.00 0.00 41.14 4.83
565 567 2.726821 TCCCTATACGACCAAACGACT 58.273 47.619 0.00 0.00 37.03 4.18
572 574 4.263771 TGCATAGAGATCCCTATACGACCA 60.264 45.833 0.00 0.00 0.00 4.02
576 578 8.553459 AAAAATTGCATAGAGATCCCTATACG 57.447 34.615 0.00 0.00 0.00 3.06
590 592 9.814899 CATCCCAAACATAGTAAAAATTGCATA 57.185 29.630 0.00 0.00 0.00 3.14
603 605 6.949352 ATCTACAAAGCATCCCAAACATAG 57.051 37.500 0.00 0.00 0.00 2.23
645 647 8.870160 ACGAAAATGACTTGATTCAAATTCAA 57.130 26.923 12.16 0.00 30.33 2.69
646 648 9.958234 TTACGAAAATGACTTGATTCAAATTCA 57.042 25.926 11.04 11.04 30.33 2.57
716 718 1.355916 GCCTAGTCACTCGCCGTAG 59.644 63.158 0.00 0.00 0.00 3.51
742 744 0.674895 GTCACATGTGGCCCTCTGAC 60.675 60.000 25.16 9.90 0.00 3.51
746 748 0.322816 ACATGTCACATGTGGCCCTC 60.323 55.000 26.79 12.08 33.48 4.30
748 750 1.885157 CACATGTCACATGTGGCCC 59.115 57.895 34.63 14.63 44.04 5.80
784 786 1.612146 TGGGATGAGTCTTGGCCGA 60.612 57.895 0.00 0.00 0.00 5.54
799 801 0.321210 TTGTGTGGCTGTATCGTGGG 60.321 55.000 0.00 0.00 0.00 4.61
840 842 2.774687 CGTTAATACTGGGGGTATGGC 58.225 52.381 0.00 0.00 40.62 4.40
851 853 3.515330 AAGTACAGCCGCGTTAATACT 57.485 42.857 4.92 4.94 0.00 2.12
862 864 1.766496 TGTGGGCCTATAAGTACAGCC 59.234 52.381 4.53 0.00 43.09 4.85
893 895 2.037208 GGATGGTTGTGGGTGGGG 59.963 66.667 0.00 0.00 0.00 4.96
996 1020 2.202797 CCGGAGCTCCACATCGTG 60.203 66.667 31.67 13.64 35.14 4.35
1013 1040 3.098377 GACTCGTCGAGGTCGGAGC 62.098 68.421 25.25 0.00 40.29 4.70
1149 1200 1.034838 CCTCAGACTCCTCCACCTCG 61.035 65.000 0.00 0.00 0.00 4.63
1309 1366 4.477975 GTCGTCCGTCAGGCTCCG 62.478 72.222 0.00 0.00 37.47 4.63
1368 1425 2.482142 GGGGATCTCGTTGTAGCTGAAG 60.482 54.545 0.00 0.00 0.00 3.02
1568 1625 5.106791 CCAATCATATTGAGGTCGAGCAATC 60.107 44.000 18.15 7.16 36.27 2.67
1581 1638 4.461781 GGAGGGCAAGATCCAATCATATTG 59.538 45.833 0.00 0.00 35.54 1.90
1582 1639 4.670765 GGAGGGCAAGATCCAATCATATT 58.329 43.478 0.00 0.00 35.54 1.28
1583 1640 3.307975 CGGAGGGCAAGATCCAATCATAT 60.308 47.826 0.00 0.00 35.14 1.78
1585 1642 1.202855 CGGAGGGCAAGATCCAATCAT 60.203 52.381 0.00 0.00 35.14 2.45
1588 1645 1.143813 ATCGGAGGGCAAGATCCAAT 58.856 50.000 0.00 0.00 35.14 3.16
1639 1696 8.465999 TCTAGAGAGTTCAGATGAATCAAGAAC 58.534 37.037 14.51 14.51 40.88 3.01
1654 1711 4.081420 TGAACTGGCCATTCTAGAGAGTTC 60.081 45.833 21.12 19.33 38.75 3.01
1669 1726 1.838112 TGGTCCAATCATGAACTGGC 58.162 50.000 18.28 14.03 0.00 4.85
1686 1743 9.391006 TCAACAGTAGGTTATAGCTTAAATTGG 57.609 33.333 0.00 0.00 37.72 3.16
1697 1754 5.045215 CGCGGAAATCAACAGTAGGTTATA 58.955 41.667 0.00 0.00 37.72 0.98
1698 1755 3.869246 CGCGGAAATCAACAGTAGGTTAT 59.131 43.478 0.00 0.00 37.72 1.89
1699 1756 3.255725 CGCGGAAATCAACAGTAGGTTA 58.744 45.455 0.00 0.00 37.72 2.85
1700 1757 2.073816 CGCGGAAATCAACAGTAGGTT 58.926 47.619 0.00 0.00 41.47 3.50
1701 1758 1.001633 ACGCGGAAATCAACAGTAGGT 59.998 47.619 12.47 0.00 0.00 3.08
1702 1759 1.659098 GACGCGGAAATCAACAGTAGG 59.341 52.381 12.47 0.00 0.00 3.18
1703 1760 2.333926 TGACGCGGAAATCAACAGTAG 58.666 47.619 12.47 0.00 0.00 2.57
1704 1761 2.442212 TGACGCGGAAATCAACAGTA 57.558 45.000 12.47 0.00 0.00 2.74
1720 1781 4.889832 AGCAATCCAATCGAAGAATGAC 57.110 40.909 0.00 0.00 40.43 3.06
1725 1786 4.635223 CTCCATAGCAATCCAATCGAAGA 58.365 43.478 0.00 0.00 45.75 2.87
1784 1859 2.113774 CTGTCCCCTGCAGCAACA 59.886 61.111 8.66 10.72 0.00 3.33
1898 1977 1.550976 GTCTTCCTTCGTCTGTGGGAT 59.449 52.381 0.00 0.00 0.00 3.85
1899 1978 0.966920 GTCTTCCTTCGTCTGTGGGA 59.033 55.000 0.00 0.00 0.00 4.37
1901 1980 0.596577 TCGTCTTCCTTCGTCTGTGG 59.403 55.000 0.00 0.00 0.00 4.17
1902 1981 2.320367 CTTCGTCTTCCTTCGTCTGTG 58.680 52.381 0.00 0.00 0.00 3.66
1903 1982 1.336056 GCTTCGTCTTCCTTCGTCTGT 60.336 52.381 0.00 0.00 0.00 3.41
1904 1983 1.341606 GCTTCGTCTTCCTTCGTCTG 58.658 55.000 0.00 0.00 0.00 3.51
1905 1984 0.244178 GGCTTCGTCTTCCTTCGTCT 59.756 55.000 0.00 0.00 0.00 4.18
1910 1989 1.416401 TGAGTTGGCTTCGTCTTCCTT 59.584 47.619 0.00 0.00 0.00 3.36
1947 2026 1.728490 GGTCGCCTGATGAATTGGGC 61.728 60.000 0.00 0.00 41.02 5.36
2050 2129 0.538057 TGCACCCTTCCTTCTGCTTG 60.538 55.000 0.00 0.00 0.00 4.01
2051 2130 0.538287 GTGCACCCTTCCTTCTGCTT 60.538 55.000 5.22 0.00 0.00 3.91
2054 2133 2.328099 GCGTGCACCCTTCCTTCTG 61.328 63.158 12.15 0.00 0.00 3.02
2056 2135 1.648467 GATGCGTGCACCCTTCCTTC 61.648 60.000 12.15 0.00 0.00 3.46
2057 2136 1.675641 GATGCGTGCACCCTTCCTT 60.676 57.895 12.15 0.00 0.00 3.36
2124 2205 2.134287 GGCGACATCCTCCTGGCTA 61.134 63.158 0.00 0.00 0.00 3.93
2128 2209 4.899239 GCCGGCGACATCCTCCTG 62.899 72.222 12.58 0.00 0.00 3.86
2140 2221 0.031178 CAGCATTAGAAATGGCCGGC 59.969 55.000 21.18 21.18 0.00 6.13
2206 2290 3.993081 GGATCGAGGATTCATAGTGCTTG 59.007 47.826 0.00 0.00 0.00 4.01
2210 2294 6.018425 CAGTTTTGGATCGAGGATTCATAGTG 60.018 42.308 0.00 0.00 26.54 2.74
2223 2309 4.155826 TGATTTAGCCACAGTTTTGGATCG 59.844 41.667 0.00 0.00 39.24 3.69
2228 2314 6.869913 ACATGAATGATTTAGCCACAGTTTTG 59.130 34.615 0.00 0.00 0.00 2.44
2229 2315 6.996509 ACATGAATGATTTAGCCACAGTTTT 58.003 32.000 0.00 0.00 0.00 2.43
2230 2316 6.594788 ACATGAATGATTTAGCCACAGTTT 57.405 33.333 0.00 0.00 0.00 2.66
2232 2318 7.176515 TGTTTACATGAATGATTTAGCCACAGT 59.823 33.333 0.00 0.00 0.00 3.55
2237 2323 7.761409 TGTCTGTTTACATGAATGATTTAGCC 58.239 34.615 0.00 0.00 0.00 3.93
2289 2379 9.941664 CTCAGCACGAGATCAATTATTTTTATT 57.058 29.630 0.00 0.00 45.45 1.40
2290 2380 8.072567 GCTCAGCACGAGATCAATTATTTTTAT 58.927 33.333 7.31 0.00 45.45 1.40
2291 2381 7.280876 AGCTCAGCACGAGATCAATTATTTTTA 59.719 33.333 0.00 0.00 45.45 1.52
2321 2412 4.892934 ACTGATGGTAAAGAAACAAAGGCA 59.107 37.500 0.00 0.00 0.00 4.75
2322 2413 5.453567 ACTGATGGTAAAGAAACAAAGGC 57.546 39.130 0.00 0.00 0.00 4.35
2323 2414 7.444183 TCTGTACTGATGGTAAAGAAACAAAGG 59.556 37.037 0.00 0.00 40.65 3.11
2324 2415 8.283291 GTCTGTACTGATGGTAAAGAAACAAAG 58.717 37.037 5.69 0.00 43.90 2.77
2325 2416 7.771361 TGTCTGTACTGATGGTAAAGAAACAAA 59.229 33.333 5.69 0.00 43.90 2.83
2326 2417 7.225931 GTGTCTGTACTGATGGTAAAGAAACAA 59.774 37.037 5.69 0.00 45.70 2.83
2327 2418 6.704493 GTGTCTGTACTGATGGTAAAGAAACA 59.296 38.462 5.69 0.00 45.70 2.83
2328 2419 6.704493 TGTGTCTGTACTGATGGTAAAGAAAC 59.296 38.462 5.69 8.56 46.20 2.78
2329 2420 6.822442 TGTGTCTGTACTGATGGTAAAGAAA 58.178 36.000 5.69 0.00 43.90 2.52
2330 2421 6.413783 TGTGTCTGTACTGATGGTAAAGAA 57.586 37.500 5.69 0.00 43.90 2.52
2331 2422 6.413783 TTGTGTCTGTACTGATGGTAAAGA 57.586 37.500 5.69 0.00 41.15 2.52
2332 2423 5.120830 GCTTGTGTCTGTACTGATGGTAAAG 59.879 44.000 5.69 7.27 37.15 1.85
2333 2424 4.994852 GCTTGTGTCTGTACTGATGGTAAA 59.005 41.667 5.69 0.00 31.56 2.01
2334 2425 4.566004 GCTTGTGTCTGTACTGATGGTAA 58.434 43.478 5.69 0.07 31.56 2.85
2335 2426 3.366985 CGCTTGTGTCTGTACTGATGGTA 60.367 47.826 5.69 0.00 0.00 3.25
2336 2427 2.610479 CGCTTGTGTCTGTACTGATGGT 60.610 50.000 5.69 0.00 0.00 3.55
2337 2428 1.995484 CGCTTGTGTCTGTACTGATGG 59.005 52.381 5.69 0.00 0.00 3.51
2338 2429 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
2339 2430 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
2340 2431 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
2341 2432 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
2342 2433 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
2343 2434 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
2344 2435 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
2345 2436 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
2346 2437 3.243877 GTGTATATGAGCGCTTGTGTCTG 59.756 47.826 13.26 0.00 0.00 3.51
2347 2438 3.119137 TGTGTATATGAGCGCTTGTGTCT 60.119 43.478 13.26 0.00 0.00 3.41
2348 2439 3.000322 GTGTGTATATGAGCGCTTGTGTC 60.000 47.826 13.26 0.00 0.00 3.67
2349 2440 2.930040 GTGTGTATATGAGCGCTTGTGT 59.070 45.455 13.26 4.27 0.00 3.72
2350 2441 2.034591 CGTGTGTATATGAGCGCTTGTG 60.035 50.000 13.26 0.00 0.00 3.33
2351 2442 2.193447 CGTGTGTATATGAGCGCTTGT 58.807 47.619 13.26 5.98 0.00 3.16
2352 2443 1.071239 GCGTGTGTATATGAGCGCTTG 60.071 52.381 13.26 0.00 41.37 4.01
2353 2444 1.209128 GCGTGTGTATATGAGCGCTT 58.791 50.000 13.26 0.00 41.37 4.68
2354 2445 0.102300 TGCGTGTGTATATGAGCGCT 59.898 50.000 11.27 11.27 44.34 5.92
2355 2446 1.139989 ATGCGTGTGTATATGAGCGC 58.860 50.000 0.00 0.00 44.29 5.92
2356 2447 3.119628 GTGTATGCGTGTGTATATGAGCG 59.880 47.826 0.00 0.00 0.00 5.03
2357 2448 4.299155 AGTGTATGCGTGTGTATATGAGC 58.701 43.478 0.00 0.00 0.00 4.26
2358 2449 5.399596 GTGAGTGTATGCGTGTGTATATGAG 59.600 44.000 0.00 0.00 0.00 2.90
2359 2450 5.278604 GTGAGTGTATGCGTGTGTATATGA 58.721 41.667 0.00 0.00 0.00 2.15
2360 2451 4.444388 GGTGAGTGTATGCGTGTGTATATG 59.556 45.833 0.00 0.00 0.00 1.78
2361 2452 4.500887 GGGTGAGTGTATGCGTGTGTATAT 60.501 45.833 0.00 0.00 0.00 0.86
2362 2453 3.181484 GGGTGAGTGTATGCGTGTGTATA 60.181 47.826 0.00 0.00 0.00 1.47
2363 2454 2.418197 GGGTGAGTGTATGCGTGTGTAT 60.418 50.000 0.00 0.00 0.00 2.29
2364 2455 1.067425 GGGTGAGTGTATGCGTGTGTA 60.067 52.381 0.00 0.00 0.00 2.90
2365 2456 0.320421 GGGTGAGTGTATGCGTGTGT 60.320 55.000 0.00 0.00 0.00 3.72
2366 2457 1.019278 GGGGTGAGTGTATGCGTGTG 61.019 60.000 0.00 0.00 0.00 3.82
2367 2458 1.192146 AGGGGTGAGTGTATGCGTGT 61.192 55.000 0.00 0.00 0.00 4.49
2368 2459 0.821517 TAGGGGTGAGTGTATGCGTG 59.178 55.000 0.00 0.00 0.00 5.34
2369 2460 1.412710 CATAGGGGTGAGTGTATGCGT 59.587 52.381 0.00 0.00 0.00 5.24
2370 2461 1.686587 TCATAGGGGTGAGTGTATGCG 59.313 52.381 0.00 0.00 0.00 4.73
2371 2462 3.467803 GTTCATAGGGGTGAGTGTATGC 58.532 50.000 0.00 0.00 0.00 3.14
2372 2463 3.717707 CGTTCATAGGGGTGAGTGTATG 58.282 50.000 0.00 0.00 0.00 2.39
2373 2464 2.102588 GCGTTCATAGGGGTGAGTGTAT 59.897 50.000 0.00 0.00 0.00 2.29
2374 2465 1.479323 GCGTTCATAGGGGTGAGTGTA 59.521 52.381 0.00 0.00 0.00 2.90
2375 2466 0.249398 GCGTTCATAGGGGTGAGTGT 59.751 55.000 0.00 0.00 0.00 3.55
2376 2467 0.249120 TGCGTTCATAGGGGTGAGTG 59.751 55.000 0.00 0.00 0.00 3.51
2377 2468 0.249398 GTGCGTTCATAGGGGTGAGT 59.751 55.000 0.00 0.00 0.00 3.41
2378 2469 0.249120 TGTGCGTTCATAGGGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
2379 2470 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
2380 2471 1.024579 GGTGTGCGTTCATAGGGGTG 61.025 60.000 0.00 0.00 0.00 4.61
2381 2472 1.298667 GGTGTGCGTTCATAGGGGT 59.701 57.895 0.00 0.00 0.00 4.95
2382 2473 1.451387 GGGTGTGCGTTCATAGGGG 60.451 63.158 0.00 0.00 0.00 4.79
2383 2474 0.828022 TAGGGTGTGCGTTCATAGGG 59.172 55.000 0.00 0.00 0.00 3.53
2384 2475 1.472728 GGTAGGGTGTGCGTTCATAGG 60.473 57.143 0.00 0.00 0.00 2.57
2385 2476 1.472728 GGGTAGGGTGTGCGTTCATAG 60.473 57.143 0.00 0.00 0.00 2.23
2386 2477 0.538118 GGGTAGGGTGTGCGTTCATA 59.462 55.000 0.00 0.00 0.00 2.15
2387 2478 1.298667 GGGTAGGGTGTGCGTTCAT 59.701 57.895 0.00 0.00 0.00 2.57
2388 2479 2.745037 GGGTAGGGTGTGCGTTCA 59.255 61.111 0.00 0.00 0.00 3.18
2389 2480 1.259840 TAGGGGTAGGGTGTGCGTTC 61.260 60.000 0.00 0.00 0.00 3.95
2390 2481 0.619543 ATAGGGGTAGGGTGTGCGTT 60.620 55.000 0.00 0.00 0.00 4.84
2391 2482 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
2392 2483 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
2393 2484 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
2394 2485 2.176247 ACTCATAGGGGTAGGGTGTG 57.824 55.000 0.00 0.00 0.00 3.82
2395 2486 3.733281 AGATACTCATAGGGGTAGGGTGT 59.267 47.826 0.00 0.00 0.00 4.16
2396 2487 4.090090 CAGATACTCATAGGGGTAGGGTG 58.910 52.174 0.00 0.00 0.00 4.61
2397 2488 3.733281 ACAGATACTCATAGGGGTAGGGT 59.267 47.826 0.00 0.00 0.00 4.34
2398 2489 4.090090 CACAGATACTCATAGGGGTAGGG 58.910 52.174 0.00 0.00 0.00 3.53
2399 2490 4.999310 TCACAGATACTCATAGGGGTAGG 58.001 47.826 0.00 0.00 0.00 3.18
2400 2491 7.554835 GTCTATCACAGATACTCATAGGGGTAG 59.445 44.444 0.00 0.00 35.17 3.18
2401 2492 7.239984 AGTCTATCACAGATACTCATAGGGGTA 59.760 40.741 0.00 0.00 35.17 3.69
2402 2493 6.046168 AGTCTATCACAGATACTCATAGGGGT 59.954 42.308 0.00 0.00 35.17 4.95
2403 2494 6.489603 AGTCTATCACAGATACTCATAGGGG 58.510 44.000 0.00 0.00 35.17 4.79
2404 2495 9.173021 CTTAGTCTATCACAGATACTCATAGGG 57.827 40.741 0.00 0.00 35.17 3.53
2405 2496 8.673711 GCTTAGTCTATCACAGATACTCATAGG 58.326 40.741 0.00 0.00 35.17 2.57
2406 2497 8.673711 GGCTTAGTCTATCACAGATACTCATAG 58.326 40.741 0.00 0.00 35.17 2.23
2407 2498 7.334671 CGGCTTAGTCTATCACAGATACTCATA 59.665 40.741 0.00 0.00 35.17 2.15
2408 2499 6.150307 CGGCTTAGTCTATCACAGATACTCAT 59.850 42.308 0.00 0.00 35.17 2.90
2409 2500 5.470437 CGGCTTAGTCTATCACAGATACTCA 59.530 44.000 0.00 0.00 35.17 3.41
2410 2501 5.701750 TCGGCTTAGTCTATCACAGATACTC 59.298 44.000 0.00 0.00 35.17 2.59
2411 2502 5.470777 GTCGGCTTAGTCTATCACAGATACT 59.529 44.000 0.00 0.00 35.17 2.12
2412 2503 5.238868 TGTCGGCTTAGTCTATCACAGATAC 59.761 44.000 0.00 0.00 35.17 2.24
2413 2504 5.374071 TGTCGGCTTAGTCTATCACAGATA 58.626 41.667 0.00 0.00 35.17 1.98
2414 2505 4.207955 TGTCGGCTTAGTCTATCACAGAT 58.792 43.478 0.00 0.00 35.17 2.90
2415 2506 3.617284 TGTCGGCTTAGTCTATCACAGA 58.383 45.455 0.00 0.00 0.00 3.41
2416 2507 4.576216 ATGTCGGCTTAGTCTATCACAG 57.424 45.455 0.00 0.00 0.00 3.66
2417 2508 5.358725 TGTTATGTCGGCTTAGTCTATCACA 59.641 40.000 0.00 0.00 0.00 3.58
2418 2509 5.828747 TGTTATGTCGGCTTAGTCTATCAC 58.171 41.667 0.00 0.00 0.00 3.06
2419 2510 6.490381 AGATGTTATGTCGGCTTAGTCTATCA 59.510 38.462 0.00 0.00 0.00 2.15
2420 2511 6.915349 AGATGTTATGTCGGCTTAGTCTATC 58.085 40.000 0.00 0.00 0.00 2.08
2421 2512 6.902771 AGATGTTATGTCGGCTTAGTCTAT 57.097 37.500 0.00 0.00 0.00 1.98
2422 2513 6.320418 TCAAGATGTTATGTCGGCTTAGTCTA 59.680 38.462 0.00 0.00 0.00 2.59
2423 2514 5.127194 TCAAGATGTTATGTCGGCTTAGTCT 59.873 40.000 0.00 0.00 0.00 3.24
2424 2515 5.348986 TCAAGATGTTATGTCGGCTTAGTC 58.651 41.667 0.00 0.00 0.00 2.59
2425 2516 5.127194 TCTCAAGATGTTATGTCGGCTTAGT 59.873 40.000 0.00 0.00 0.00 2.24
2426 2517 5.592054 TCTCAAGATGTTATGTCGGCTTAG 58.408 41.667 0.00 0.00 0.00 2.18
2427 2518 5.592104 TCTCAAGATGTTATGTCGGCTTA 57.408 39.130 0.00 0.00 0.00 3.09
2428 2519 4.471904 TCTCAAGATGTTATGTCGGCTT 57.528 40.909 0.00 0.00 0.00 4.35
2429 2520 4.679373 ATCTCAAGATGTTATGTCGGCT 57.321 40.909 0.00 0.00 32.68 5.52
2430 2521 5.741388 AAATCTCAAGATGTTATGTCGGC 57.259 39.130 0.00 0.00 34.49 5.54
2431 2522 9.698309 ATAGTAAATCTCAAGATGTTATGTCGG 57.302 33.333 0.00 0.00 34.49 4.79
2437 2528 9.534565 GTGCTCATAGTAAATCTCAAGATGTTA 57.465 33.333 0.00 0.00 34.49 2.41
2438 2529 7.497249 GGTGCTCATAGTAAATCTCAAGATGTT 59.503 37.037 0.00 0.00 34.49 2.71
2439 2530 6.989169 GGTGCTCATAGTAAATCTCAAGATGT 59.011 38.462 0.00 0.00 34.49 3.06
2440 2531 7.215789 AGGTGCTCATAGTAAATCTCAAGATG 58.784 38.462 0.00 0.00 34.49 2.90
2441 2532 7.372260 AGGTGCTCATAGTAAATCTCAAGAT 57.628 36.000 0.00 0.00 36.07 2.40
2442 2533 6.798427 AGGTGCTCATAGTAAATCTCAAGA 57.202 37.500 0.00 0.00 0.00 3.02
2443 2534 6.199908 CGAAGGTGCTCATAGTAAATCTCAAG 59.800 42.308 0.00 0.00 0.00 3.02
2444 2535 6.042777 CGAAGGTGCTCATAGTAAATCTCAA 58.957 40.000 0.00 0.00 0.00 3.02
2445 2536 5.359860 TCGAAGGTGCTCATAGTAAATCTCA 59.640 40.000 0.00 0.00 0.00 3.27
2446 2537 5.833082 TCGAAGGTGCTCATAGTAAATCTC 58.167 41.667 0.00 0.00 0.00 2.75
2447 2538 5.854010 TCGAAGGTGCTCATAGTAAATCT 57.146 39.130 0.00 0.00 0.00 2.40
2448 2539 7.539366 GTCTATCGAAGGTGCTCATAGTAAATC 59.461 40.741 0.00 0.00 0.00 2.17
2449 2540 7.231722 AGTCTATCGAAGGTGCTCATAGTAAAT 59.768 37.037 0.00 0.00 0.00 1.40
2450 2541 6.546403 AGTCTATCGAAGGTGCTCATAGTAAA 59.454 38.462 0.00 0.00 0.00 2.01
2451 2542 6.062749 AGTCTATCGAAGGTGCTCATAGTAA 58.937 40.000 0.00 0.00 0.00 2.24
2452 2543 5.622180 AGTCTATCGAAGGTGCTCATAGTA 58.378 41.667 0.00 0.00 0.00 1.82
2453 2544 4.465886 AGTCTATCGAAGGTGCTCATAGT 58.534 43.478 0.00 0.00 0.00 2.12
2454 2545 6.561737 TTAGTCTATCGAAGGTGCTCATAG 57.438 41.667 0.00 0.00 0.00 2.23
2455 2546 5.048643 GCTTAGTCTATCGAAGGTGCTCATA 60.049 44.000 0.00 0.00 31.09 2.15
2456 2547 4.261825 GCTTAGTCTATCGAAGGTGCTCAT 60.262 45.833 0.00 0.00 31.09 2.90
2457 2548 3.066900 GCTTAGTCTATCGAAGGTGCTCA 59.933 47.826 0.00 0.00 31.09 4.26
2458 2549 3.551250 GGCTTAGTCTATCGAAGGTGCTC 60.551 52.174 0.00 0.00 31.09 4.26
2459 2550 2.362717 GGCTTAGTCTATCGAAGGTGCT 59.637 50.000 0.00 0.00 31.09 4.40
2460 2551 2.745102 GGCTTAGTCTATCGAAGGTGC 58.255 52.381 0.00 0.00 31.09 5.01
2461 2552 2.617308 TCGGCTTAGTCTATCGAAGGTG 59.383 50.000 0.00 0.00 31.09 4.00
2462 2553 2.617774 GTCGGCTTAGTCTATCGAAGGT 59.382 50.000 0.00 0.00 31.09 3.50
2463 2554 2.617308 TGTCGGCTTAGTCTATCGAAGG 59.383 50.000 0.00 0.00 31.09 3.46
2464 2555 3.965292 TGTCGGCTTAGTCTATCGAAG 57.035 47.619 0.00 0.00 33.06 3.79
2465 2556 5.704053 TGATATGTCGGCTTAGTCTATCGAA 59.296 40.000 0.00 0.00 0.00 3.71
2466 2557 5.243207 TGATATGTCGGCTTAGTCTATCGA 58.757 41.667 0.00 0.00 0.00 3.59
2467 2558 5.547181 TGATATGTCGGCTTAGTCTATCG 57.453 43.478 0.00 0.00 0.00 2.92
2468 2559 7.328277 AGATGATATGTCGGCTTAGTCTATC 57.672 40.000 0.00 0.00 0.00 2.08
2469 2560 7.394641 TCAAGATGATATGTCGGCTTAGTCTAT 59.605 37.037 0.00 0.00 0.00 1.98
2470 2561 6.715264 TCAAGATGATATGTCGGCTTAGTCTA 59.285 38.462 0.00 0.00 0.00 2.59
2471 2562 5.536538 TCAAGATGATATGTCGGCTTAGTCT 59.463 40.000 0.00 0.00 0.00 3.24
2472 2563 5.773575 TCAAGATGATATGTCGGCTTAGTC 58.226 41.667 0.00 0.00 0.00 2.59
2473 2564 5.536538 TCTCAAGATGATATGTCGGCTTAGT 59.463 40.000 0.00 0.00 0.00 2.24
2474 2565 6.018589 TCTCAAGATGATATGTCGGCTTAG 57.981 41.667 0.00 0.00 0.00 2.18
2475 2566 6.596309 ATCTCAAGATGATATGTCGGCTTA 57.404 37.500 0.00 0.00 32.68 3.09
2476 2567 4.944619 TCTCAAGATGATATGTCGGCTT 57.055 40.909 0.00 0.00 0.00 4.35
2477 2568 5.480642 AATCTCAAGATGATATGTCGGCT 57.519 39.130 0.00 0.00 34.49 5.52
2478 2569 6.183360 CGTAAATCTCAAGATGATATGTCGGC 60.183 42.308 0.00 0.00 34.49 5.54
2479 2570 7.084486 TCGTAAATCTCAAGATGATATGTCGG 58.916 38.462 0.00 0.00 34.49 4.79
2480 2571 8.507470 TTCGTAAATCTCAAGATGATATGTCG 57.493 34.615 0.00 0.00 34.49 4.35
2481 2572 9.469807 ACTTCGTAAATCTCAAGATGATATGTC 57.530 33.333 0.00 0.00 34.49 3.06
2482 2573 9.469807 GACTTCGTAAATCTCAAGATGATATGT 57.530 33.333 0.00 0.00 34.49 2.29
2483 2574 9.468532 TGACTTCGTAAATCTCAAGATGATATG 57.531 33.333 0.00 0.00 34.49 1.78
2485 2576 9.684448 GATGACTTCGTAAATCTCAAGATGATA 57.316 33.333 0.00 0.00 34.49 2.15
2486 2577 8.200120 TGATGACTTCGTAAATCTCAAGATGAT 58.800 33.333 0.00 0.00 34.49 2.45
2487 2578 7.547227 TGATGACTTCGTAAATCTCAAGATGA 58.453 34.615 0.00 0.00 34.49 2.92
2488 2579 7.761651 TGATGACTTCGTAAATCTCAAGATG 57.238 36.000 0.00 0.00 34.49 2.90
2489 2580 9.689976 CTATGATGACTTCGTAAATCTCAAGAT 57.310 33.333 0.00 0.00 36.07 2.40
2490 2581 8.903820 TCTATGATGACTTCGTAAATCTCAAGA 58.096 33.333 0.00 0.00 0.00 3.02
2491 2582 8.963130 GTCTATGATGACTTCGTAAATCTCAAG 58.037 37.037 0.00 0.00 34.39 3.02
2492 2583 7.644157 CGTCTATGATGACTTCGTAAATCTCAA 59.356 37.037 0.00 0.00 35.00 3.02
2493 2584 7.132863 CGTCTATGATGACTTCGTAAATCTCA 58.867 38.462 0.00 0.00 35.00 3.27
2494 2585 6.087028 GCGTCTATGATGACTTCGTAAATCTC 59.913 42.308 0.00 0.00 35.00 2.75
2495 2586 5.915758 GCGTCTATGATGACTTCGTAAATCT 59.084 40.000 0.00 0.00 35.00 2.40
2496 2587 5.117287 GGCGTCTATGATGACTTCGTAAATC 59.883 44.000 0.00 0.00 35.00 2.17
2497 2588 4.982916 GGCGTCTATGATGACTTCGTAAAT 59.017 41.667 0.00 0.00 35.00 1.40
2498 2589 4.097437 AGGCGTCTATGATGACTTCGTAAA 59.903 41.667 0.00 0.00 32.18 2.01
2499 2590 3.630769 AGGCGTCTATGATGACTTCGTAA 59.369 43.478 0.00 0.00 32.18 3.18
2500 2591 3.211865 AGGCGTCTATGATGACTTCGTA 58.788 45.455 0.00 0.00 32.18 3.43
2501 2592 2.025155 AGGCGTCTATGATGACTTCGT 58.975 47.619 0.00 0.00 32.18 3.85
2502 2593 2.656085 GAGGCGTCTATGATGACTTCG 58.344 52.381 0.00 0.00 37.00 3.79
2503 2594 2.033550 ACGAGGCGTCTATGATGACTTC 59.966 50.000 4.69 0.00 37.00 3.01
2504 2595 2.025155 ACGAGGCGTCTATGATGACTT 58.975 47.619 4.69 0.00 37.00 3.01
2505 2596 1.681538 ACGAGGCGTCTATGATGACT 58.318 50.000 4.69 0.00 40.00 3.41
2531 2622 1.063469 ACAAACAAAGCCACGTTCTCG 59.937 47.619 0.00 0.00 43.34 4.04
2532 2623 2.844122 ACAAACAAAGCCACGTTCTC 57.156 45.000 0.00 0.00 0.00 2.87
2533 2624 3.586100 AAACAAACAAAGCCACGTTCT 57.414 38.095 0.00 0.00 0.00 3.01
2534 2625 3.924073 AGAAAACAAACAAAGCCACGTTC 59.076 39.130 0.00 0.00 0.00 3.95
2535 2626 3.920446 AGAAAACAAACAAAGCCACGTT 58.080 36.364 0.00 0.00 0.00 3.99
2536 2627 3.586100 AGAAAACAAACAAAGCCACGT 57.414 38.095 0.00 0.00 0.00 4.49
2537 2628 4.919677 AAAGAAAACAAACAAAGCCACG 57.080 36.364 0.00 0.00 0.00 4.94
2538 2629 5.850653 CACAAAAGAAAACAAACAAAGCCAC 59.149 36.000 0.00 0.00 0.00 5.01
2539 2630 5.529060 ACACAAAAGAAAACAAACAAAGCCA 59.471 32.000 0.00 0.00 0.00 4.75
2540 2631 5.996219 ACACAAAAGAAAACAAACAAAGCC 58.004 33.333 0.00 0.00 0.00 4.35
2541 2632 5.783169 CGACACAAAAGAAAACAAACAAAGC 59.217 36.000 0.00 0.00 0.00 3.51
2587 2678 2.476051 CAAGCAACGTAGCTGGCG 59.524 61.111 10.32 10.32 45.89 5.69
2637 2728 1.717194 TAACACCTCGCGGTTGATTC 58.283 50.000 6.13 0.00 42.13 2.52
2674 2765 1.334160 TAGGAACAGAGCGGTGAACA 58.666 50.000 0.00 0.00 0.00 3.18
2682 2773 2.541762 GCGTGATGATTAGGAACAGAGC 59.458 50.000 0.00 0.00 0.00 4.09
2719 2810 4.514577 ATCTTCGGCGCCTCCACG 62.515 66.667 26.68 11.12 34.01 4.94
2720 2811 2.586357 GATCTTCGGCGCCTCCAC 60.586 66.667 26.68 7.16 34.01 4.02
2721 2812 4.207281 CGATCTTCGGCGCCTCCA 62.207 66.667 26.68 4.99 36.00 3.86
2806 2911 4.020928 TGCAGAATTTTCCAGATGCACATT 60.021 37.500 0.00 0.00 38.64 2.71
2847 2952 1.203523 AGATCTGAACAGACCAGTCGC 59.796 52.381 6.67 0.00 40.75 5.19
2853 2958 2.266554 CTGCGAAGATCTGAACAGACC 58.733 52.381 11.77 0.00 40.75 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.