Multiple sequence alignment - TraesCS4A01G233000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G233000 chr4A 100.000 3954 0 0 1 3954 542044910 542048863 0.000000e+00 7302.0
1 TraesCS4A01G233000 chr4A 94.155 787 40 4 3172 3954 577986952 577987736 0.000000e+00 1194.0
2 TraesCS4A01G233000 chr4A 84.751 623 64 15 1618 2236 542093339 542093934 2.630000e-166 595.0
3 TraesCS4A01G233000 chr4D 90.915 1629 78 24 665 2249 55034471 55032869 0.000000e+00 2124.0
4 TraesCS4A01G233000 chr4D 93.482 537 32 1 2636 3172 54897961 54897428 0.000000e+00 795.0
5 TraesCS4A01G233000 chr4D 89.914 466 33 3 2150 2615 55010443 55009992 4.400000e-164 588.0
6 TraesCS4A01G233000 chr4D 87.118 458 37 7 2245 2693 55011728 55011284 2.120000e-137 499.0
7 TraesCS4A01G233000 chr4D 95.238 42 1 1 460 501 334109087 334109127 9.170000e-07 65.8
8 TraesCS4A01G233000 chr4D 100.000 29 0 0 628 656 55034526 55034498 2.000000e-03 54.7
9 TraesCS4A01G233000 chr4B 88.356 1606 136 31 835 2413 81988788 81987207 0.000000e+00 1882.0
10 TraesCS4A01G233000 chr4B 87.678 211 19 4 991 1198 81920393 81920187 5.110000e-59 239.0
11 TraesCS4A01G233000 chr4B 86.559 186 21 3 2406 2587 81987095 81986910 6.700000e-48 202.0
12 TraesCS4A01G233000 chr2A 94.268 785 37 5 3173 3952 459139956 459140737 0.000000e+00 1194.0
13 TraesCS4A01G233000 chr2A 94.103 780 43 3 3174 3952 45071921 45071144 0.000000e+00 1182.0
14 TraesCS4A01G233000 chr2A 95.455 44 1 1 192 234 775250752 775250709 7.090000e-08 69.4
15 TraesCS4A01G233000 chr7A 94.155 787 38 6 3173 3954 111779141 111778358 0.000000e+00 1192.0
16 TraesCS4A01G233000 chr5A 94.162 788 37 6 3172 3954 697809419 697810202 0.000000e+00 1192.0
17 TraesCS4A01G233000 chr5A 92.711 782 55 2 3173 3954 628801092 628800313 0.000000e+00 1127.0
18 TraesCS4A01G233000 chr5A 83.333 84 6 2 2585 2660 567820086 567820169 1.970000e-08 71.3
19 TraesCS4A01G233000 chr5A 100.000 36 0 0 465 500 363922426 363922391 2.550000e-07 67.6
20 TraesCS4A01G233000 chr5A 100.000 36 0 0 465 500 452122313 452122278 2.550000e-07 67.6
21 TraesCS4A01G233000 chr5A 100.000 28 0 0 2585 2612 247262942 247262969 7.000000e-03 52.8
22 TraesCS4A01G233000 chr5A 100.000 28 0 0 2585 2612 419214801 419214774 7.000000e-03 52.8
23 TraesCS4A01G233000 chr1A 93.774 787 45 4 3169 3953 6528480 6527696 0.000000e+00 1179.0
24 TraesCS4A01G233000 chr1A 83.190 232 33 4 1320 1545 551186518 551186287 1.440000e-49 207.0
25 TraesCS4A01G233000 chr1A 81.395 215 37 2 1335 1546 551197450 551197236 5.250000e-39 172.0
26 TraesCS4A01G233000 chr1A 82.143 196 32 2 1328 1520 551209475 551209280 8.790000e-37 165.0
27 TraesCS4A01G233000 chr3A 93.631 785 47 2 3172 3954 427336901 427337684 0.000000e+00 1170.0
28 TraesCS4A01G233000 chr3A 93.384 786 46 4 3173 3954 555893381 555894164 0.000000e+00 1158.0
29 TraesCS4A01G233000 chr3A 100.000 29 0 0 2586 2614 49605206 49605178 2.000000e-03 54.7
30 TraesCS4A01G233000 chr1D 84.120 233 29 7 1320 1545 458761631 458761400 6.650000e-53 219.0
31 TraesCS4A01G233000 chr1D 80.930 215 38 3 1335 1546 458770824 458770610 2.440000e-37 167.0
32 TraesCS4A01G233000 chr1D 80.682 88 8 3 2585 2663 175776172 175776085 4.270000e-05 60.2
33 TraesCS4A01G233000 chr1B 81.887 265 39 7 1291 1546 630473805 630473541 8.610000e-52 215.0
34 TraesCS4A01G233000 chr1B 80.426 235 40 5 1290 1518 630511871 630511637 1.460000e-39 174.0
35 TraesCS4A01G233000 chr1B 97.368 38 1 0 465 502 223360239 223360276 9.170000e-07 65.8
36 TraesCS4A01G233000 chr1B 100.000 30 0 0 2585 2614 681146029 681146000 5.520000e-04 56.5
37 TraesCS4A01G233000 chr3D 82.955 88 6 5 2585 2663 581448632 581448545 1.970000e-08 71.3
38 TraesCS4A01G233000 chr5B 100.000 37 0 0 465 501 270440969 270441005 7.090000e-08 69.4
39 TraesCS4A01G233000 chr6D 100.000 36 0 0 465 500 457728115 457728150 2.550000e-07 67.6
40 TraesCS4A01G233000 chr6B 93.333 45 0 3 465 507 111044127 111044170 3.300000e-06 63.9
41 TraesCS4A01G233000 chr7D 91.489 47 1 3 465 508 405186322 405186276 1.190000e-05 62.1
42 TraesCS4A01G233000 chr7D 100.000 32 0 0 465 496 32004625 32004656 4.270000e-05 60.2
43 TraesCS4A01G233000 chr7D 90.476 42 4 0 2619 2660 155335349 155335390 5.520000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G233000 chr4A 542044910 542048863 3953 False 7302.00 7302 100.0000 1 3954 1 chr4A.!!$F1 3953
1 TraesCS4A01G233000 chr4A 577986952 577987736 784 False 1194.00 1194 94.1550 3172 3954 1 chr4A.!!$F3 782
2 TraesCS4A01G233000 chr4A 542093339 542093934 595 False 595.00 595 84.7510 1618 2236 1 chr4A.!!$F2 618
3 TraesCS4A01G233000 chr4D 55032869 55034526 1657 True 1089.35 2124 95.4575 628 2249 2 chr4D.!!$R3 1621
4 TraesCS4A01G233000 chr4D 54897428 54897961 533 True 795.00 795 93.4820 2636 3172 1 chr4D.!!$R1 536
5 TraesCS4A01G233000 chr4D 55009992 55011728 1736 True 543.50 588 88.5160 2150 2693 2 chr4D.!!$R2 543
6 TraesCS4A01G233000 chr4B 81986910 81988788 1878 True 1042.00 1882 87.4575 835 2587 2 chr4B.!!$R2 1752
7 TraesCS4A01G233000 chr2A 459139956 459140737 781 False 1194.00 1194 94.2680 3173 3952 1 chr2A.!!$F1 779
8 TraesCS4A01G233000 chr2A 45071144 45071921 777 True 1182.00 1182 94.1030 3174 3952 1 chr2A.!!$R1 778
9 TraesCS4A01G233000 chr7A 111778358 111779141 783 True 1192.00 1192 94.1550 3173 3954 1 chr7A.!!$R1 781
10 TraesCS4A01G233000 chr5A 697809419 697810202 783 False 1192.00 1192 94.1620 3172 3954 1 chr5A.!!$F3 782
11 TraesCS4A01G233000 chr5A 628800313 628801092 779 True 1127.00 1127 92.7110 3173 3954 1 chr5A.!!$R4 781
12 TraesCS4A01G233000 chr1A 6527696 6528480 784 True 1179.00 1179 93.7740 3169 3953 1 chr1A.!!$R1 784
13 TraesCS4A01G233000 chr3A 427336901 427337684 783 False 1170.00 1170 93.6310 3172 3954 1 chr3A.!!$F1 782
14 TraesCS4A01G233000 chr3A 555893381 555894164 783 False 1158.00 1158 93.3840 3173 3954 1 chr3A.!!$F2 781

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
48 49 0.037605 AAAGGTAACGCTCCTGTCGG 60.038 55.0 0.00 0.0 46.39 4.79 F
516 517 0.098376 CTACGTCTACAGCGACCCAC 59.902 60.0 0.00 0.0 0.00 4.61 F
660 661 0.108019 AATTCCGGCCGTCCTTATCC 59.892 55.0 26.12 0.0 0.00 2.59 F
848 867 0.371645 CGAAGCTGAAAGATCCACGC 59.628 55.0 0.00 0.0 34.07 5.34 F
2625 2835 0.178981 AGTGTTGCTGACCATTGGCT 60.179 50.0 1.54 0.0 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1201 1268 0.459585 CGGGGGATGTACACGTGAAG 60.460 60.000 25.01 0.0 0.00 3.02 R
1374 1441 1.617850 GAGCTGTCGATGATCTCCCAT 59.382 52.381 0.00 0.0 0.00 4.00 R
2157 2238 2.034687 ATCCACGCCTTTGCTGCT 59.965 55.556 0.00 0.0 34.43 4.24 R
2822 3032 0.249657 GAGGAAGCGGGTATGAGCAG 60.250 60.000 0.00 0.0 35.48 4.24 R
3905 4122 1.250328 TCTATGTCACGTTGGTCGGT 58.750 50.000 0.00 0.0 44.69 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.827756 CCTTGTAAATACTTCCCCCTTCTT 58.172 41.667 0.00 0.00 0.00 2.52
25 26 7.407729 CCTTGTAAATACTTCCCCCTTCTTAA 58.592 38.462 0.00 0.00 0.00 1.85
26 27 8.059461 CCTTGTAAATACTTCCCCCTTCTTAAT 58.941 37.037 0.00 0.00 0.00 1.40
27 28 8.817092 TTGTAAATACTTCCCCCTTCTTAATG 57.183 34.615 0.00 0.00 0.00 1.90
29 30 8.616598 TGTAAATACTTCCCCCTTCTTAATGAA 58.383 33.333 0.00 0.00 0.00 2.57
30 31 9.470399 GTAAATACTTCCCCCTTCTTAATGAAA 57.530 33.333 0.00 0.00 33.79 2.69
31 32 8.966155 AAATACTTCCCCCTTCTTAATGAAAA 57.034 30.769 0.00 0.00 33.79 2.29
32 33 8.595362 AATACTTCCCCCTTCTTAATGAAAAG 57.405 34.615 0.00 0.00 33.79 2.27
34 35 5.162870 ACTTCCCCCTTCTTAATGAAAAGGT 60.163 40.000 0.00 0.00 38.30 3.50
36 37 6.471942 TCCCCCTTCTTAATGAAAAGGTAA 57.528 37.500 0.00 0.00 38.30 2.85
37 38 6.250711 TCCCCCTTCTTAATGAAAAGGTAAC 58.749 40.000 0.00 0.00 38.30 2.50
38 39 5.124936 CCCCCTTCTTAATGAAAAGGTAACG 59.875 44.000 0.00 0.00 38.30 3.18
39 40 5.392703 CCCCTTCTTAATGAAAAGGTAACGC 60.393 44.000 0.00 0.00 38.30 4.84
41 42 6.403309 CCCTTCTTAATGAAAAGGTAACGCTC 60.403 42.308 0.00 0.00 38.30 5.03
42 43 6.403309 CCTTCTTAATGAAAAGGTAACGCTCC 60.403 42.308 0.00 0.00 35.79 4.70
43 44 5.801380 TCTTAATGAAAAGGTAACGCTCCT 58.199 37.500 0.00 0.00 46.39 3.69
44 45 5.642063 TCTTAATGAAAAGGTAACGCTCCTG 59.358 40.000 0.00 0.00 46.39 3.86
45 46 2.922740 TGAAAAGGTAACGCTCCTGT 57.077 45.000 0.00 0.00 46.39 4.00
46 47 2.762745 TGAAAAGGTAACGCTCCTGTC 58.237 47.619 0.00 0.00 46.39 3.51
47 48 1.725164 GAAAAGGTAACGCTCCTGTCG 59.275 52.381 0.00 0.00 46.39 4.35
48 49 0.037605 AAAGGTAACGCTCCTGTCGG 60.038 55.000 0.00 0.00 46.39 4.79
49 50 1.183676 AAGGTAACGCTCCTGTCGGT 61.184 55.000 0.00 0.00 46.39 4.69
50 51 0.322816 AGGTAACGCTCCTGTCGGTA 60.323 55.000 0.00 0.00 46.39 4.02
52 53 0.525029 GTAACGCTCCTGTCGGTAGC 60.525 60.000 0.00 0.00 33.09 3.58
53 54 0.679002 TAACGCTCCTGTCGGTAGCT 60.679 55.000 0.00 0.00 33.79 3.32
54 55 0.679002 AACGCTCCTGTCGGTAGCTA 60.679 55.000 0.00 0.00 33.79 3.32
57 58 1.135199 CGCTCCTGTCGGTAGCTAAAA 60.135 52.381 0.00 0.00 33.79 1.52
58 59 2.673043 CGCTCCTGTCGGTAGCTAAAAA 60.673 50.000 0.00 0.00 33.79 1.94
102 103 8.773404 AAGTATATAAAAGATCCATACACGGC 57.227 34.615 0.00 0.00 0.00 5.68
104 105 1.663695 AAAAGATCCATACACGGCCG 58.336 50.000 26.86 26.86 0.00 6.13
106 107 1.405872 AAGATCCATACACGGCCGTA 58.594 50.000 33.70 18.34 0.00 4.02
107 108 0.959553 AGATCCATACACGGCCGTAG 59.040 55.000 33.70 26.15 0.00 3.51
108 109 0.956633 GATCCATACACGGCCGTAGA 59.043 55.000 33.70 22.35 0.00 2.59
110 111 1.405872 TCCATACACGGCCGTAGAAT 58.594 50.000 33.70 21.07 0.00 2.40
111 112 1.338973 TCCATACACGGCCGTAGAATC 59.661 52.381 33.70 0.00 0.00 2.52
112 113 1.405461 CATACACGGCCGTAGAATCG 58.595 55.000 33.70 20.27 0.00 3.34
113 114 1.027357 ATACACGGCCGTAGAATCGT 58.973 50.000 33.70 25.09 36.19 3.73
116 117 0.734942 CACGGCCGTAGAATCGTGTT 60.735 55.000 33.70 0.00 45.15 3.32
117 118 0.810648 ACGGCCGTAGAATCGTGTTA 59.189 50.000 33.34 0.00 34.40 2.41
119 120 1.064505 CGGCCGTAGAATCGTGTTAGA 59.935 52.381 19.50 0.00 0.00 2.10
120 121 2.478370 CGGCCGTAGAATCGTGTTAGAA 60.478 50.000 19.50 0.00 0.00 2.10
122 123 4.117685 GGCCGTAGAATCGTGTTAGAATT 58.882 43.478 0.00 0.00 0.00 2.17
124 125 5.750067 GGCCGTAGAATCGTGTTAGAATTAA 59.250 40.000 0.00 0.00 0.00 1.40
125 126 6.074463 GGCCGTAGAATCGTGTTAGAATTAAG 60.074 42.308 0.00 0.00 0.00 1.85
128 129 7.306051 CCGTAGAATCGTGTTAGAATTAAGCAG 60.306 40.741 0.00 0.00 0.00 4.24
129 130 7.220300 CGTAGAATCGTGTTAGAATTAAGCAGT 59.780 37.037 0.00 0.00 0.00 4.40
130 131 7.295952 AGAATCGTGTTAGAATTAAGCAGTG 57.704 36.000 0.00 0.00 0.00 3.66
131 132 6.874134 AGAATCGTGTTAGAATTAAGCAGTGT 59.126 34.615 0.00 0.00 0.00 3.55
132 133 5.839262 TCGTGTTAGAATTAAGCAGTGTG 57.161 39.130 0.00 0.00 0.00 3.82
134 135 6.448852 TCGTGTTAGAATTAAGCAGTGTGTA 58.551 36.000 0.00 0.00 0.00 2.90
135 136 6.584942 TCGTGTTAGAATTAAGCAGTGTGTAG 59.415 38.462 0.00 0.00 0.00 2.74
137 138 7.115805 CGTGTTAGAATTAAGCAGTGTGTAGAA 59.884 37.037 0.00 0.00 0.00 2.10
138 139 8.936864 GTGTTAGAATTAAGCAGTGTGTAGAAT 58.063 33.333 0.00 0.00 0.00 2.40
152 153 9.862371 CAGTGTGTAGAATTATATGATACTCCC 57.138 37.037 0.00 0.00 0.00 4.30
153 154 9.830186 AGTGTGTAGAATTATATGATACTCCCT 57.170 33.333 0.00 0.00 0.00 4.20
155 156 9.822727 TGTGTAGAATTATATGATACTCCCTCA 57.177 33.333 0.00 0.00 0.00 3.86
160 161 8.997734 AGAATTATATGATACTCCCTCAATCCC 58.002 37.037 0.00 0.00 0.00 3.85
161 162 8.940012 AATTATATGATACTCCCTCAATCCCT 57.060 34.615 0.00 0.00 0.00 4.20
162 163 7.979786 TTATATGATACTCCCTCAATCCCTC 57.020 40.000 0.00 0.00 0.00 4.30
163 164 2.977808 TGATACTCCCTCAATCCCTCC 58.022 52.381 0.00 0.00 0.00 4.30
165 166 1.023719 TACTCCCTCAATCCCTCCCA 58.976 55.000 0.00 0.00 0.00 4.37
167 168 0.621571 CTCCCTCAATCCCTCCCACA 60.622 60.000 0.00 0.00 0.00 4.17
168 169 0.178846 TCCCTCAATCCCTCCCACAA 60.179 55.000 0.00 0.00 0.00 3.33
170 171 2.135189 CCCTCAATCCCTCCCACAATA 58.865 52.381 0.00 0.00 0.00 1.90
171 172 2.718609 CCCTCAATCCCTCCCACAATAT 59.281 50.000 0.00 0.00 0.00 1.28
173 174 4.353788 CCCTCAATCCCTCCCACAATATAA 59.646 45.833 0.00 0.00 0.00 0.98
175 176 6.469239 CCCTCAATCCCTCCCACAATATAATT 60.469 42.308 0.00 0.00 0.00 1.40
176 177 7.257382 CCCTCAATCCCTCCCACAATATAATTA 60.257 40.741 0.00 0.00 0.00 1.40
177 178 8.170061 CCTCAATCCCTCCCACAATATAATTAA 58.830 37.037 0.00 0.00 0.00 1.40
179 180 8.954729 TCAATCCCTCCCACAATATAATTAAGA 58.045 33.333 0.00 0.00 0.00 2.10
180 181 9.759473 CAATCCCTCCCACAATATAATTAAGAT 57.241 33.333 0.00 0.00 0.00 2.40
182 183 9.759473 ATCCCTCCCACAATATAATTAAGATTG 57.241 33.333 16.37 16.37 36.77 2.67
183 184 8.732854 TCCCTCCCACAATATAATTAAGATTGT 58.267 33.333 17.29 17.29 42.97 2.71
184 185 9.367160 CCCTCCCACAATATAATTAAGATTGTT 57.633 33.333 19.19 8.42 40.85 2.83
216 217 8.636213 AGCTTGAAAATGATCTTATATTGTGGG 58.364 33.333 0.00 0.00 0.00 4.61
217 218 7.869429 GCTTGAAAATGATCTTATATTGTGGGG 59.131 37.037 0.00 0.00 0.00 4.96
218 219 7.288810 TGAAAATGATCTTATATTGTGGGGC 57.711 36.000 0.00 0.00 0.00 5.80
219 220 5.964958 AAATGATCTTATATTGTGGGGCG 57.035 39.130 0.00 0.00 0.00 6.13
221 222 2.976185 TGATCTTATATTGTGGGGCGGA 59.024 45.455 0.00 0.00 0.00 5.54
223 224 3.417069 TCTTATATTGTGGGGCGGATG 57.583 47.619 0.00 0.00 0.00 3.51
224 225 2.039746 TCTTATATTGTGGGGCGGATGG 59.960 50.000 0.00 0.00 0.00 3.51
225 226 1.735926 TATATTGTGGGGCGGATGGA 58.264 50.000 0.00 0.00 0.00 3.41
226 227 0.401738 ATATTGTGGGGCGGATGGAG 59.598 55.000 0.00 0.00 0.00 3.86
228 229 0.986019 ATTGTGGGGCGGATGGAGTA 60.986 55.000 0.00 0.00 0.00 2.59
229 230 1.622607 TTGTGGGGCGGATGGAGTAG 61.623 60.000 0.00 0.00 0.00 2.57
230 231 2.064581 GTGGGGCGGATGGAGTAGT 61.065 63.158 0.00 0.00 0.00 2.73
231 232 1.306654 TGGGGCGGATGGAGTAGTT 60.307 57.895 0.00 0.00 0.00 2.24
233 234 1.335132 GGGGCGGATGGAGTAGTTGA 61.335 60.000 0.00 0.00 0.00 3.18
236 237 2.367567 GGGCGGATGGAGTAGTTGATTA 59.632 50.000 0.00 0.00 0.00 1.75
238 239 4.222145 GGGCGGATGGAGTAGTTGATTATA 59.778 45.833 0.00 0.00 0.00 0.98
239 240 5.279809 GGGCGGATGGAGTAGTTGATTATAA 60.280 44.000 0.00 0.00 0.00 0.98
242 243 7.095187 GGCGGATGGAGTAGTTGATTATAAAAG 60.095 40.741 0.00 0.00 0.00 2.27
243 244 7.441458 GCGGATGGAGTAGTTGATTATAAAAGT 59.559 37.037 0.00 0.00 0.00 2.66
244 245 8.765219 CGGATGGAGTAGTTGATTATAAAAGTG 58.235 37.037 0.00 0.00 0.00 3.16
245 246 9.832445 GGATGGAGTAGTTGATTATAAAAGTGA 57.168 33.333 0.00 0.00 0.00 3.41
296 297 9.412390 CAAAATTAATTAGATGCAATGTTTCGC 57.588 29.630 0.01 0.00 0.00 4.70
297 298 8.700722 AAATTAATTAGATGCAATGTTTCGCA 57.299 26.923 0.01 0.00 43.45 5.10
299 300 8.700722 ATTAATTAGATGCAATGTTTCGCAAA 57.299 26.923 0.00 0.00 42.37 3.68
301 302 3.648339 AGATGCAATGTTTCGCAAACT 57.352 38.095 11.34 0.00 42.37 2.66
302 303 4.764679 AGATGCAATGTTTCGCAAACTA 57.235 36.364 11.34 1.95 42.37 2.24
304 305 6.435430 AGATGCAATGTTTCGCAAACTATA 57.565 33.333 11.34 0.00 42.37 1.31
306 307 7.483307 AGATGCAATGTTTCGCAAACTATATT 58.517 30.769 11.34 3.23 42.37 1.28
307 308 7.975616 AGATGCAATGTTTCGCAAACTATATTT 59.024 29.630 11.34 0.00 42.37 1.40
308 309 7.275697 TGCAATGTTTCGCAAACTATATTTG 57.724 32.000 11.34 0.00 41.90 2.32
320 321 7.599630 CAAACTATATTTGCAAATTGGTGCT 57.400 32.000 28.45 7.20 45.17 4.40
321 322 8.031848 CAAACTATATTTGCAAATTGGTGCTT 57.968 30.769 28.45 12.99 45.17 3.91
322 323 7.599630 AACTATATTTGCAAATTGGTGCTTG 57.400 32.000 28.45 12.91 45.17 4.01
323 324 6.700352 ACTATATTTGCAAATTGGTGCTTGT 58.300 32.000 28.45 13.45 45.17 3.16
324 325 5.866335 ATATTTGCAAATTGGTGCTTGTG 57.134 34.783 28.45 0.00 45.17 3.33
325 326 2.687700 TTGCAAATTGGTGCTTGTGT 57.312 40.000 0.00 0.00 45.17 3.72
326 327 3.808466 TTGCAAATTGGTGCTTGTGTA 57.192 38.095 0.00 0.00 45.17 2.90
327 328 4.333913 TTGCAAATTGGTGCTTGTGTAT 57.666 36.364 0.00 0.00 45.17 2.29
328 329 4.333913 TGCAAATTGGTGCTTGTGTATT 57.666 36.364 3.90 0.00 45.17 1.89
329 330 5.459536 TGCAAATTGGTGCTTGTGTATTA 57.540 34.783 3.90 0.00 45.17 0.98
331 332 6.462500 TGCAAATTGGTGCTTGTGTATTAAT 58.538 32.000 3.90 0.00 45.17 1.40
332 333 6.368243 TGCAAATTGGTGCTTGTGTATTAATG 59.632 34.615 0.00 0.00 45.17 1.90
333 334 6.183360 GCAAATTGGTGCTTGTGTATTAATGG 60.183 38.462 0.00 0.00 41.51 3.16
335 336 5.895636 TTGGTGCTTGTGTATTAATGGAG 57.104 39.130 0.00 0.00 0.00 3.86
337 338 5.565509 TGGTGCTTGTGTATTAATGGAGAA 58.434 37.500 0.00 0.00 0.00 2.87
338 339 5.414454 TGGTGCTTGTGTATTAATGGAGAAC 59.586 40.000 0.00 0.00 0.00 3.01
341 342 5.123820 TGCTTGTGTATTAATGGAGAACTGC 59.876 40.000 0.00 0.00 0.00 4.40
344 345 6.682423 TGTGTATTAATGGAGAACTGCATG 57.318 37.500 9.37 0.00 40.85 4.06
347 348 5.829391 TGTATTAATGGAGAACTGCATGCAT 59.171 36.000 22.97 7.28 40.85 3.96
348 349 4.642445 TTAATGGAGAACTGCATGCATG 57.358 40.909 22.97 22.70 40.85 4.06
349 350 2.139323 ATGGAGAACTGCATGCATGT 57.861 45.000 26.79 17.92 40.21 3.21
351 352 3.286329 TGGAGAACTGCATGCATGTAT 57.714 42.857 26.79 9.33 0.00 2.29
352 353 2.946990 TGGAGAACTGCATGCATGTATG 59.053 45.455 26.79 18.42 0.00 2.39
353 354 2.947652 GGAGAACTGCATGCATGTATGT 59.052 45.455 26.79 19.03 0.00 2.29
354 355 3.242969 GGAGAACTGCATGCATGTATGTG 60.243 47.826 26.79 17.71 0.00 3.21
355 356 3.349927 AGAACTGCATGCATGTATGTGT 58.650 40.909 26.79 18.25 0.00 3.72
356 357 4.516323 AGAACTGCATGCATGTATGTGTA 58.484 39.130 26.79 10.43 0.00 2.90
358 359 6.290605 AGAACTGCATGCATGTATGTGTATA 58.709 36.000 26.79 6.25 0.00 1.47
359 360 6.938596 AGAACTGCATGCATGTATGTGTATAT 59.061 34.615 26.79 8.64 0.00 0.86
360 361 8.096414 AGAACTGCATGCATGTATGTGTATATA 58.904 33.333 26.79 0.00 0.00 0.86
361 362 7.601073 ACTGCATGCATGTATGTGTATATAC 57.399 36.000 26.79 5.89 34.78 1.47
362 363 6.311200 ACTGCATGCATGTATGTGTATATACG 59.689 38.462 26.79 9.25 36.54 3.06
363 364 5.580297 TGCATGCATGTATGTGTATATACGG 59.420 40.000 26.79 0.00 36.54 4.02
365 366 6.019559 GCATGCATGTATGTGTATATACGGAG 60.020 42.308 26.79 0.00 36.54 4.63
386 387 9.282569 ACGGAGTAAATAGATACGATAGAAAGT 57.717 33.333 0.00 0.00 41.94 2.66
395 396 7.499321 AGATACGATAGAAAGTACACTCTGG 57.501 40.000 6.92 0.72 41.38 3.86
397 398 5.564048 ACGATAGAAAGTACACTCTGGTC 57.436 43.478 6.92 4.91 41.38 4.02
399 400 4.496010 CGATAGAAAGTACACTCTGGTCCG 60.496 50.000 6.92 2.69 39.76 4.79
400 401 1.893801 AGAAAGTACACTCTGGTCCGG 59.106 52.381 0.00 0.00 0.00 5.14
402 403 2.592102 AAGTACACTCTGGTCCGGTA 57.408 50.000 0.00 0.00 0.00 4.02
405 406 2.560105 AGTACACTCTGGTCCGGTAAAC 59.440 50.000 0.00 0.00 0.00 2.01
407 408 1.764134 ACACTCTGGTCCGGTAAACAA 59.236 47.619 0.00 0.00 0.00 2.83
409 410 1.270678 ACTCTGGTCCGGTAAACAAGC 60.271 52.381 0.00 0.00 0.00 4.01
410 411 0.759959 TCTGGTCCGGTAAACAAGCA 59.240 50.000 0.00 0.00 0.00 3.91
412 413 1.535462 CTGGTCCGGTAAACAAGCAAG 59.465 52.381 0.00 0.00 0.00 4.01
413 414 1.141254 TGGTCCGGTAAACAAGCAAGA 59.859 47.619 0.00 0.00 0.00 3.02
415 416 2.619646 GGTCCGGTAAACAAGCAAGAAA 59.380 45.455 0.00 0.00 0.00 2.52
416 417 3.067040 GGTCCGGTAAACAAGCAAGAAAA 59.933 43.478 0.00 0.00 0.00 2.29
418 419 4.035909 GTCCGGTAAACAAGCAAGAAAAGA 59.964 41.667 0.00 0.00 0.00 2.52
419 420 4.641094 TCCGGTAAACAAGCAAGAAAAGAA 59.359 37.500 0.00 0.00 0.00 2.52
420 421 5.125739 TCCGGTAAACAAGCAAGAAAAGAAA 59.874 36.000 0.00 0.00 0.00 2.52
421 422 5.808030 CCGGTAAACAAGCAAGAAAAGAAAA 59.192 36.000 0.00 0.00 0.00 2.29
422 423 6.019881 CCGGTAAACAAGCAAGAAAAGAAAAG 60.020 38.462 0.00 0.00 0.00 2.27
423 424 6.750039 CGGTAAACAAGCAAGAAAAGAAAAGA 59.250 34.615 0.00 0.00 0.00 2.52
425 426 8.931775 GGTAAACAAGCAAGAAAAGAAAAGAAA 58.068 29.630 0.00 0.00 0.00 2.52
430 431 8.306761 ACAAGCAAGAAAAGAAAAGAAAAGAGA 58.693 29.630 0.00 0.00 0.00 3.10
432 433 9.881649 AAGCAAGAAAAGAAAAGAAAAGAGAAT 57.118 25.926 0.00 0.00 0.00 2.40
433 434 9.310716 AGCAAGAAAAGAAAAGAAAAGAGAATG 57.689 29.630 0.00 0.00 0.00 2.67
451 452 9.794685 AAGAGAATGAAAAAGAAGAACAAGAAC 57.205 29.630 0.00 0.00 0.00 3.01
452 453 8.960591 AGAGAATGAAAAAGAAGAACAAGAACA 58.039 29.630 0.00 0.00 0.00 3.18
453 454 9.230932 GAGAATGAAAAAGAAGAACAAGAACAG 57.769 33.333 0.00 0.00 0.00 3.16
455 456 9.573133 GAATGAAAAAGAAGAACAAGAACAGAA 57.427 29.630 0.00 0.00 0.00 3.02
456 457 9.927668 AATGAAAAAGAAGAACAAGAACAGAAA 57.072 25.926 0.00 0.00 0.00 2.52
457 458 8.742554 TGAAAAAGAAGAACAAGAACAGAAAC 57.257 30.769 0.00 0.00 0.00 2.78
458 459 7.537306 TGAAAAAGAAGAACAAGAACAGAAACG 59.463 33.333 0.00 0.00 0.00 3.60
459 460 6.737254 AAAGAAGAACAAGAACAGAAACGA 57.263 33.333 0.00 0.00 0.00 3.85
460 461 6.737254 AAGAAGAACAAGAACAGAAACGAA 57.263 33.333 0.00 0.00 0.00 3.85
462 463 6.543736 AGAAGAACAAGAACAGAAACGAAAC 58.456 36.000 0.00 0.00 0.00 2.78
463 464 4.893795 AGAACAAGAACAGAAACGAAACG 58.106 39.130 0.00 0.00 0.00 3.60
464 465 3.668596 ACAAGAACAGAAACGAAACGG 57.331 42.857 0.00 0.00 0.00 4.44
465 466 3.264104 ACAAGAACAGAAACGAAACGGA 58.736 40.909 0.00 0.00 0.00 4.69
466 467 3.308866 ACAAGAACAGAAACGAAACGGAG 59.691 43.478 0.00 0.00 0.00 4.63
469 470 2.589798 ACAGAAACGAAACGGAGTCA 57.410 45.000 0.00 0.00 45.00 3.41
470 471 3.107642 ACAGAAACGAAACGGAGTCAT 57.892 42.857 0.00 0.00 45.00 3.06
471 472 3.057734 ACAGAAACGAAACGGAGTCATC 58.942 45.455 0.00 0.00 45.00 2.92
472 473 3.243771 ACAGAAACGAAACGGAGTCATCT 60.244 43.478 0.00 0.00 45.00 2.90
476 477 6.090898 CAGAAACGAAACGGAGTCATCTATTT 59.909 38.462 0.00 0.00 45.00 1.40
478 479 5.779806 ACGAAACGGAGTCATCTATTTTG 57.220 39.130 0.00 0.00 45.00 2.44
479 480 4.630069 ACGAAACGGAGTCATCTATTTTGG 59.370 41.667 0.00 0.00 45.00 3.28
480 481 4.868171 CGAAACGGAGTCATCTATTTTGGA 59.132 41.667 0.00 0.00 45.00 3.53
482 483 6.496338 AAACGGAGTCATCTATTTTGGAAC 57.504 37.500 0.00 0.00 45.00 3.62
483 484 4.181578 ACGGAGTCATCTATTTTGGAACG 58.818 43.478 0.00 0.00 29.74 3.95
484 485 3.555956 CGGAGTCATCTATTTTGGAACGG 59.444 47.826 0.00 0.00 0.00 4.44
485 486 4.679639 CGGAGTCATCTATTTTGGAACGGA 60.680 45.833 0.00 0.00 0.00 4.69
487 488 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
488 489 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
489 490 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
490 491 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
492 493 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
493 494 4.966805 TCTATTTTGGAACGGAGGGAGTAT 59.033 41.667 0.00 0.00 0.00 2.12
494 495 6.138263 TCTATTTTGGAACGGAGGGAGTATA 58.862 40.000 0.00 0.00 0.00 1.47
495 496 5.906772 ATTTTGGAACGGAGGGAGTATAT 57.093 39.130 0.00 0.00 0.00 0.86
496 497 7.951806 TCTATTTTGGAACGGAGGGAGTATATA 59.048 37.037 0.00 0.00 0.00 0.86
501 502 4.633565 GGAACGGAGGGAGTATATACTACG 59.366 50.000 17.25 16.29 38.05 3.51
502 503 4.899352 ACGGAGGGAGTATATACTACGT 57.101 45.455 18.19 18.19 38.05 3.57
503 504 4.826556 ACGGAGGGAGTATATACTACGTC 58.173 47.826 28.55 28.55 46.26 4.34
504 505 4.530161 ACGGAGGGAGTATATACTACGTCT 59.470 45.833 32.08 20.11 46.23 4.18
505 506 5.717178 ACGGAGGGAGTATATACTACGTCTA 59.283 44.000 32.08 0.00 46.23 2.59
506 507 6.039616 CGGAGGGAGTATATACTACGTCTAC 58.960 48.000 32.08 21.79 46.23 2.59
507 508 6.350528 CGGAGGGAGTATATACTACGTCTACA 60.351 46.154 32.08 0.00 46.23 2.74
508 509 7.041107 GGAGGGAGTATATACTACGTCTACAG 58.959 46.154 32.08 0.00 46.23 2.74
510 511 5.290643 GGGAGTATATACTACGTCTACAGCG 59.709 48.000 17.25 0.00 38.05 5.18
512 513 6.034470 GGAGTATATACTACGTCTACAGCGAC 59.966 46.154 15.42 0.00 36.50 5.19
513 514 5.866633 AGTATATACTACGTCTACAGCGACC 59.133 44.000 13.88 0.00 34.13 4.79
514 515 1.656652 TACTACGTCTACAGCGACCC 58.343 55.000 0.00 0.00 0.00 4.46
515 516 0.321919 ACTACGTCTACAGCGACCCA 60.322 55.000 0.00 0.00 0.00 4.51
516 517 0.098376 CTACGTCTACAGCGACCCAC 59.902 60.000 0.00 0.00 0.00 4.61
517 518 1.308069 TACGTCTACAGCGACCCACC 61.308 60.000 0.00 0.00 0.00 4.61
518 519 2.632544 CGTCTACAGCGACCCACCA 61.633 63.158 0.00 0.00 0.00 4.17
519 520 1.898154 GTCTACAGCGACCCACCAT 59.102 57.895 0.00 0.00 0.00 3.55
520 521 0.460284 GTCTACAGCGACCCACCATG 60.460 60.000 0.00 0.00 0.00 3.66
522 523 1.610967 TACAGCGACCCACCATGGA 60.611 57.895 21.47 0.00 40.96 3.41
524 525 1.524621 CAGCGACCCACCATGGATC 60.525 63.158 21.47 9.23 40.96 3.36
526 527 1.077787 GCGACCCACCATGGATCAA 60.078 57.895 21.47 0.00 40.96 2.57
527 528 0.679640 GCGACCCACCATGGATCAAA 60.680 55.000 21.47 0.00 40.96 2.69
528 529 1.832883 CGACCCACCATGGATCAAAA 58.167 50.000 21.47 0.00 40.96 2.44
529 530 1.472480 CGACCCACCATGGATCAAAAC 59.528 52.381 21.47 2.60 40.96 2.43
530 531 1.472480 GACCCACCATGGATCAAAACG 59.528 52.381 21.47 0.00 40.96 3.60
531 532 1.074727 ACCCACCATGGATCAAAACGA 59.925 47.619 21.47 0.00 40.96 3.85
532 533 1.472480 CCCACCATGGATCAAAACGAC 59.528 52.381 21.47 0.00 40.96 4.34
533 534 1.472480 CCACCATGGATCAAAACGACC 59.528 52.381 21.47 0.00 40.96 4.79
534 535 2.436417 CACCATGGATCAAAACGACCT 58.564 47.619 21.47 0.00 0.00 3.85
537 538 1.133025 CATGGATCAAAACGACCTGGC 59.867 52.381 0.00 0.00 0.00 4.85
539 540 1.202879 TGGATCAAAACGACCTGGCTT 60.203 47.619 0.00 0.00 0.00 4.35
540 541 1.200020 GGATCAAAACGACCTGGCTTG 59.800 52.381 0.00 0.00 0.00 4.01
541 542 2.151202 GATCAAAACGACCTGGCTTGA 58.849 47.619 0.00 0.00 0.00 3.02
542 543 1.305201 TCAAAACGACCTGGCTTGAC 58.695 50.000 0.00 0.00 0.00 3.18
543 544 0.310854 CAAAACGACCTGGCTTGACC 59.689 55.000 0.00 0.00 39.84 4.02
545 546 1.053424 AAACGACCTGGCTTGACCTA 58.947 50.000 0.00 0.00 40.22 3.08
547 548 1.053424 ACGACCTGGCTTGACCTAAA 58.947 50.000 0.00 0.00 40.22 1.85
549 550 1.270625 CGACCTGGCTTGACCTAAACA 60.271 52.381 0.00 0.00 40.22 2.83
551 552 1.073923 ACCTGGCTTGACCTAAACAGG 59.926 52.381 6.95 6.95 43.71 4.00
552 553 1.351017 CCTGGCTTGACCTAAACAGGA 59.649 52.381 0.00 0.00 42.09 3.86
553 554 2.427506 CTGGCTTGACCTAAACAGGAC 58.572 52.381 0.00 0.00 40.22 3.85
554 555 1.073284 TGGCTTGACCTAAACAGGACC 59.927 52.381 0.00 0.00 40.22 4.46
555 556 1.439679 GCTTGACCTAAACAGGACCG 58.560 55.000 0.00 0.00 0.00 4.79
558 559 3.326747 CTTGACCTAAACAGGACCGAAG 58.673 50.000 0.00 0.00 0.00 3.79
559 560 1.001633 TGACCTAAACAGGACCGAAGC 59.998 52.381 0.00 0.00 0.00 3.86
561 562 1.418637 ACCTAAACAGGACCGAAGCAA 59.581 47.619 0.00 0.00 0.00 3.91
562 563 2.158726 ACCTAAACAGGACCGAAGCAAA 60.159 45.455 0.00 0.00 0.00 3.68
563 564 2.484264 CCTAAACAGGACCGAAGCAAAG 59.516 50.000 0.00 0.00 0.00 2.77
564 565 2.341846 AAACAGGACCGAAGCAAAGA 57.658 45.000 0.00 0.00 0.00 2.52
565 566 1.594331 AACAGGACCGAAGCAAAGAC 58.406 50.000 0.00 0.00 0.00 3.01
566 567 0.250338 ACAGGACCGAAGCAAAGACC 60.250 55.000 0.00 0.00 0.00 3.85
567 568 0.955919 CAGGACCGAAGCAAAGACCC 60.956 60.000 0.00 0.00 0.00 4.46
568 569 1.072505 GGACCGAAGCAAAGACCCA 59.927 57.895 0.00 0.00 0.00 4.51
570 571 1.065709 GGACCGAAGCAAAGACCCATA 60.066 52.381 0.00 0.00 0.00 2.74
572 573 1.349688 ACCGAAGCAAAGACCCATACA 59.650 47.619 0.00 0.00 0.00 2.29
573 574 2.224670 ACCGAAGCAAAGACCCATACAA 60.225 45.455 0.00 0.00 0.00 2.41
574 575 2.420022 CCGAAGCAAAGACCCATACAAG 59.580 50.000 0.00 0.00 0.00 3.16
575 576 3.334691 CGAAGCAAAGACCCATACAAGA 58.665 45.455 0.00 0.00 0.00 3.02
577 578 3.073274 AGCAAAGACCCATACAAGACC 57.927 47.619 0.00 0.00 0.00 3.85
578 579 2.375174 AGCAAAGACCCATACAAGACCA 59.625 45.455 0.00 0.00 0.00 4.02
579 580 2.749621 GCAAAGACCCATACAAGACCAG 59.250 50.000 0.00 0.00 0.00 4.00
580 581 3.559171 GCAAAGACCCATACAAGACCAGA 60.559 47.826 0.00 0.00 0.00 3.86
583 584 4.762289 AGACCCATACAAGACCAGAATC 57.238 45.455 0.00 0.00 0.00 2.52
584 585 4.104086 AGACCCATACAAGACCAGAATCA 58.896 43.478 0.00 0.00 0.00 2.57
585 586 4.723789 AGACCCATACAAGACCAGAATCAT 59.276 41.667 0.00 0.00 0.00 2.45
586 587 5.905331 AGACCCATACAAGACCAGAATCATA 59.095 40.000 0.00 0.00 0.00 2.15
587 588 6.042552 AGACCCATACAAGACCAGAATCATAG 59.957 42.308 0.00 0.00 0.00 2.23
588 589 4.999950 CCCATACAAGACCAGAATCATAGC 59.000 45.833 0.00 0.00 0.00 2.97
589 590 5.455183 CCCATACAAGACCAGAATCATAGCA 60.455 44.000 0.00 0.00 0.00 3.49
590 591 6.057533 CCATACAAGACCAGAATCATAGCAA 58.942 40.000 0.00 0.00 0.00 3.91
591 592 6.713903 CCATACAAGACCAGAATCATAGCAAT 59.286 38.462 0.00 0.00 0.00 3.56
592 593 7.308408 CCATACAAGACCAGAATCATAGCAATG 60.308 40.741 0.00 0.00 0.00 2.82
593 594 4.885907 ACAAGACCAGAATCATAGCAATGG 59.114 41.667 0.00 0.00 33.61 3.16
594 595 3.484407 AGACCAGAATCATAGCAATGGC 58.516 45.455 0.00 0.00 41.61 4.40
595 596 2.555757 GACCAGAATCATAGCAATGGCC 59.444 50.000 0.00 0.00 42.56 5.36
596 597 1.538512 CCAGAATCATAGCAATGGCCG 59.461 52.381 0.00 0.00 42.56 6.13
597 598 1.538512 CAGAATCATAGCAATGGCCGG 59.461 52.381 0.00 0.00 42.56 6.13
598 599 1.143684 AGAATCATAGCAATGGCCGGT 59.856 47.619 1.90 0.00 42.56 5.28
599 600 1.537202 GAATCATAGCAATGGCCGGTC 59.463 52.381 0.00 0.00 42.56 4.79
600 601 0.603707 ATCATAGCAATGGCCGGTCG 60.604 55.000 0.00 0.00 42.56 4.79
601 602 1.227527 CATAGCAATGGCCGGTCGA 60.228 57.895 0.00 0.00 42.56 4.20
602 603 0.603707 CATAGCAATGGCCGGTCGAT 60.604 55.000 0.00 0.00 42.56 3.59
603 604 0.603707 ATAGCAATGGCCGGTCGATG 60.604 55.000 0.00 3.68 42.56 3.84
604 605 2.658679 TAGCAATGGCCGGTCGATGG 62.659 60.000 12.19 2.46 42.56 3.51
606 607 1.889105 CAATGGCCGGTCGATGGAG 60.889 63.158 0.00 0.00 0.00 3.86
607 608 3.757248 AATGGCCGGTCGATGGAGC 62.757 63.158 0.00 0.00 37.32 4.70
610 611 3.838271 GCCGGTCGATGGAGCTGA 61.838 66.667 1.90 0.00 38.53 4.26
611 612 2.892640 CCGGTCGATGGAGCTGAA 59.107 61.111 5.37 0.00 38.53 3.02
612 613 1.443407 CCGGTCGATGGAGCTGAAT 59.557 57.895 5.37 0.00 38.53 2.57
613 614 0.673985 CCGGTCGATGGAGCTGAATA 59.326 55.000 5.37 0.00 38.53 1.75
615 616 2.600731 CGGTCGATGGAGCTGAATATC 58.399 52.381 5.37 0.00 38.53 1.63
616 617 2.672478 CGGTCGATGGAGCTGAATATCC 60.672 54.545 5.37 0.00 38.53 2.59
621 622 2.245159 TGGAGCTGAATATCCAAGCG 57.755 50.000 0.00 0.00 42.61 4.68
623 624 1.517242 GAGCTGAATATCCAAGCGGG 58.483 55.000 0.00 0.00 38.37 6.13
625 626 0.819259 GCTGAATATCCAAGCGGGCA 60.819 55.000 0.00 0.00 36.21 5.36
626 627 0.947244 CTGAATATCCAAGCGGGCAC 59.053 55.000 0.00 0.00 36.21 5.01
656 657 0.538746 AACAAATTCCGGCCGTCCTT 60.539 50.000 26.12 10.98 0.00 3.36
657 658 0.325602 ACAAATTCCGGCCGTCCTTA 59.674 50.000 26.12 4.27 0.00 2.69
658 659 1.064979 ACAAATTCCGGCCGTCCTTAT 60.065 47.619 26.12 6.64 0.00 1.73
660 661 0.108019 AATTCCGGCCGTCCTTATCC 59.892 55.000 26.12 0.00 0.00 2.59
661 662 0.763223 ATTCCGGCCGTCCTTATCCT 60.763 55.000 26.12 0.00 0.00 3.24
663 664 1.833049 CCGGCCGTCCTTATCCTCT 60.833 63.158 26.12 0.00 0.00 3.69
674 693 5.308825 GTCCTTATCCTCTCTCTCTCTCTG 58.691 50.000 0.00 0.00 0.00 3.35
679 698 3.684908 TCCTCTCTCTCTCTCTGTGTTG 58.315 50.000 0.00 0.00 0.00 3.33
687 706 3.119814 TCTCTCTCTGTGTTGTGTATCGC 60.120 47.826 0.00 0.00 0.00 4.58
748 767 7.201582 CCAGCTACGATAAGGAAACGTAAAATT 60.202 37.037 0.00 0.00 40.88 1.82
749 768 7.844653 CAGCTACGATAAGGAAACGTAAAATTC 59.155 37.037 0.00 0.00 40.88 2.17
750 769 7.763071 AGCTACGATAAGGAAACGTAAAATTCT 59.237 33.333 0.00 0.00 40.88 2.40
751 770 7.844653 GCTACGATAAGGAAACGTAAAATTCTG 59.155 37.037 0.00 0.00 40.88 3.02
780 799 2.084546 AGGCTTTCCTTTCATGTACGC 58.915 47.619 0.00 0.00 40.66 4.42
784 803 4.485163 GCTTTCCTTTCATGTACGCATTT 58.515 39.130 0.00 0.00 31.99 2.32
785 804 4.923281 GCTTTCCTTTCATGTACGCATTTT 59.077 37.500 0.00 0.00 31.99 1.82
786 805 5.405269 GCTTTCCTTTCATGTACGCATTTTT 59.595 36.000 0.00 0.00 31.99 1.94
819 838 5.068329 GGGAATAGGCTTTCCTTTCATGAAG 59.932 44.000 20.40 3.35 43.94 3.02
846 865 2.537625 CGATCGAAGCTGAAAGATCCAC 59.462 50.000 10.26 0.00 36.94 4.02
847 866 1.996292 TCGAAGCTGAAAGATCCACG 58.004 50.000 0.00 0.00 34.07 4.94
848 867 0.371645 CGAAGCTGAAAGATCCACGC 59.628 55.000 0.00 0.00 34.07 5.34
849 868 0.371645 GAAGCTGAAAGATCCACGCG 59.628 55.000 3.53 3.53 34.07 6.01
889 908 2.353839 CAAAGCACACACGCCTGC 60.354 61.111 0.00 0.00 0.00 4.85
985 1032 2.418368 AATTGGAGCACTAATCGGCA 57.582 45.000 0.00 0.00 0.00 5.69
1005 1058 1.183549 TCTTAGGAACCTCTGCCGAC 58.816 55.000 0.00 0.00 0.00 4.79
1046 1113 2.879907 CATGGCGGCCAACAAGAG 59.120 61.111 27.70 8.08 36.95 2.85
1054 1121 2.328099 GCCAACAAGAGCTCACGGG 61.328 63.158 17.77 10.69 0.00 5.28
1055 1122 2.328099 CCAACAAGAGCTCACGGGC 61.328 63.158 17.77 0.00 0.00 6.13
1056 1123 2.357517 AACAAGAGCTCACGGGCG 60.358 61.111 17.77 0.00 37.29 6.13
1057 1124 3.883744 AACAAGAGCTCACGGGCGG 62.884 63.158 17.77 0.00 37.29 6.13
1201 1268 3.279875 GGTGGCGCCGAATCATCC 61.280 66.667 23.90 11.07 0.00 3.51
1206 1273 1.643832 GCGCCGAATCATCCTTCAC 59.356 57.895 0.00 0.00 0.00 3.18
1233 1300 1.214589 CCCCCGTCGACAACTACTG 59.785 63.158 17.16 0.00 0.00 2.74
1254 1321 2.754658 CCCCTCGTCGTAGGCAGT 60.755 66.667 5.50 0.00 35.09 4.40
1384 1451 3.877450 GCGGGCCATGGGAGATCA 61.877 66.667 15.13 0.00 0.00 2.92
1401 1468 3.071206 ATCGACAGCTCCCGCAGT 61.071 61.111 0.00 0.00 38.70 4.40
1440 1507 2.045926 AAGACAGGGTGGATGCGC 60.046 61.111 0.00 0.00 0.00 6.09
1758 1825 3.550437 CTCAAGAAGGAGTACCATGGG 57.450 52.381 18.09 0.00 38.94 4.00
1937 2004 4.567159 GGTCTTCCGTCTTGTTGATCATAC 59.433 45.833 0.00 0.00 0.00 2.39
2088 2169 3.454812 GGCTGGTAGGATACAAAGAGGAA 59.545 47.826 0.00 0.00 45.43 3.36
2092 2173 6.741801 GCTGGTAGGATACAAAGAGGAATACC 60.742 46.154 0.00 0.00 45.43 2.73
2094 2175 6.326583 TGGTAGGATACAAAGAGGAATACCTG 59.673 42.308 0.00 0.00 45.13 4.00
2095 2176 5.297569 AGGATACAAAGAGGAATACCTGC 57.702 43.478 0.00 0.00 43.77 4.85
2122 2203 0.397957 TAGCGGTGCCCTGGAGATTA 60.398 55.000 0.00 0.00 0.00 1.75
2157 2238 2.360726 TCTGTAGTCCTCGCCGCA 60.361 61.111 0.00 0.00 0.00 5.69
2202 2283 0.895530 TCGACCTTGAGACCATGGAC 59.104 55.000 21.47 13.40 39.30 4.02
2293 2380 3.573967 CACCCTGAATGCTTGTAAGGTTT 59.426 43.478 0.00 0.00 0.00 3.27
2305 2392 5.066764 GCTTGTAAGGTTTGGTGTAAGTGAA 59.933 40.000 0.00 0.00 0.00 3.18
2310 2397 5.830000 AGGTTTGGTGTAAGTGAAGAAAC 57.170 39.130 0.00 0.00 0.00 2.78
2320 2407 2.576615 AGTGAAGAAACTGGTGGAAGC 58.423 47.619 0.00 0.00 0.00 3.86
2347 2434 2.417719 GCCCCACGATGTTCTCATATC 58.582 52.381 0.00 0.00 34.06 1.63
2376 2463 7.305474 ACTTGCTTTTGAATATGTAGGTTTCG 58.695 34.615 0.00 0.00 0.00 3.46
2387 2474 9.436957 GAATATGTAGGTTTCGGTCATATCATT 57.563 33.333 0.00 0.00 32.73 2.57
2426 2632 4.330074 GCTAAGCGATGCTACTCTTTTGAA 59.670 41.667 0.00 0.00 38.25 2.69
2551 2761 0.660488 TTGCGGATGTGTTGTGTGTC 59.340 50.000 0.00 0.00 0.00 3.67
2565 2775 4.717233 TGTGTGTCTCAGTTTGCAAAAT 57.283 36.364 14.67 10.45 0.00 1.82
2569 2779 4.202040 TGTGTCTCAGTTTGCAAAATCCAG 60.202 41.667 14.67 10.78 0.00 3.86
2592 2802 7.609532 CCAGTGAGGAGAAGACTAATCAAATTT 59.390 37.037 0.00 0.00 41.22 1.82
2598 2808 9.620259 AGGAGAAGACTAATCAAATTTGTATCC 57.380 33.333 17.47 11.37 0.00 2.59
2622 2832 3.441496 AACAAGTGTTGCTGACCATTG 57.559 42.857 0.00 0.00 36.80 2.82
2623 2833 1.682854 ACAAGTGTTGCTGACCATTGG 59.317 47.619 0.00 0.00 30.85 3.16
2624 2834 0.675633 AAGTGTTGCTGACCATTGGC 59.324 50.000 1.54 0.00 0.00 4.52
2625 2835 0.178981 AGTGTTGCTGACCATTGGCT 60.179 50.000 1.54 0.00 0.00 4.75
2626 2836 0.675633 GTGTTGCTGACCATTGGCTT 59.324 50.000 1.54 0.00 0.00 4.35
2627 2837 0.675083 TGTTGCTGACCATTGGCTTG 59.325 50.000 1.54 0.00 0.00 4.01
2628 2838 0.961019 GTTGCTGACCATTGGCTTGA 59.039 50.000 1.54 0.00 0.00 3.02
2629 2839 1.547372 GTTGCTGACCATTGGCTTGAT 59.453 47.619 1.54 0.00 0.00 2.57
2630 2840 1.179152 TGCTGACCATTGGCTTGATG 58.821 50.000 1.54 0.00 0.00 3.07
2632 2842 1.956636 GCTGACCATTGGCTTGATGGA 60.957 52.381 17.77 1.10 45.59 3.41
2633 2843 2.449464 CTGACCATTGGCTTGATGGAA 58.551 47.619 17.77 7.94 45.59 3.53
2634 2844 3.028850 CTGACCATTGGCTTGATGGAAT 58.971 45.455 17.77 1.51 45.59 3.01
2694 2904 1.112113 GAGGAATGCCACTACGAGGA 58.888 55.000 0.00 0.00 36.29 3.71
2714 2924 5.903810 AGGAACTAACTATGGACGAATGTC 58.096 41.667 0.00 0.00 40.44 3.06
2750 2960 1.966451 CAGGGACGAAAGCCACACC 60.966 63.158 0.00 0.00 0.00 4.16
2755 2965 2.252260 CGAAAGCCACACCTTGCG 59.748 61.111 0.00 0.00 37.51 4.85
2822 3032 4.450976 TCACATACATCAACCTATGCACC 58.549 43.478 0.00 0.00 0.00 5.01
2872 3082 2.561478 TAGACAAACCAAGCAGTCCC 57.439 50.000 0.00 0.00 0.00 4.46
2875 3085 1.067060 GACAAACCAAGCAGTCCCAAC 59.933 52.381 0.00 0.00 0.00 3.77
2877 3087 1.688197 CAAACCAAGCAGTCCCAACAT 59.312 47.619 0.00 0.00 0.00 2.71
2883 3093 1.609208 AGCAGTCCCAACATCAACAC 58.391 50.000 0.00 0.00 0.00 3.32
2907 3117 7.543868 CACAACTCAGTTCTAATCTGTTAGAGG 59.456 40.741 0.00 0.00 45.15 3.69
2956 3166 5.424121 AAGAAATATGTGCACTATTCGGC 57.576 39.130 19.41 11.45 0.00 5.54
3082 3292 1.903183 GAGTTCCTAGACTTGGTGGCT 59.097 52.381 2.75 0.59 37.97 4.75
3088 3298 2.840640 TAGACTTGGTGGCTAGGCTA 57.159 50.000 18.18 0.95 34.56 3.93
3124 3334 3.626670 GCTTCAAGATTGCTGCTGTCTAT 59.373 43.478 0.00 0.00 0.00 1.98
3138 3348 1.681793 TGTCTATTCGCTCACTAGGGC 59.318 52.381 0.00 0.00 35.68 5.19
3249 3459 0.838554 TCCAGAACCGGGACCAATGA 60.839 55.000 6.32 0.00 0.00 2.57
3371 3581 2.514824 GACCAATGGGCCTCGCTC 60.515 66.667 4.53 0.00 37.90 5.03
3372 3582 4.115199 ACCAATGGGCCTCGCTCC 62.115 66.667 4.53 0.00 37.90 4.70
3373 3583 4.883354 CCAATGGGCCTCGCTCCC 62.883 72.222 4.53 0.00 44.17 4.30
3374 3584 4.883354 CAATGGGCCTCGCTCCCC 62.883 72.222 4.53 1.28 43.24 4.81
3439 3649 2.577059 CCCCTCGCGTAAGAGCAA 59.423 61.111 5.77 0.00 43.02 3.91
3623 3837 0.892755 AGATTTAGCGGTCCGTCACA 59.107 50.000 13.94 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.903820 CATTAAGAAGGGGGAAGTATTTACAAG 58.096 37.037 0.00 0.00 0.00 3.16
2 3 8.616598 TCATTAAGAAGGGGGAAGTATTTACAA 58.383 33.333 0.00 0.00 0.00 2.41
4 5 9.470399 TTTCATTAAGAAGGGGGAAGTATTTAC 57.530 33.333 0.00 0.00 37.57 2.01
6 7 8.966155 TTTTCATTAAGAAGGGGGAAGTATTT 57.034 30.769 0.00 0.00 37.57 1.40
7 8 7.619698 CCTTTTCATTAAGAAGGGGGAAGTATT 59.380 37.037 0.00 0.00 37.57 1.89
8 9 7.126061 CCTTTTCATTAAGAAGGGGGAAGTAT 58.874 38.462 0.00 0.00 37.57 2.12
10 11 5.162870 ACCTTTTCATTAAGAAGGGGGAAGT 60.163 40.000 6.35 0.00 43.33 3.01
11 12 5.333581 ACCTTTTCATTAAGAAGGGGGAAG 58.666 41.667 6.35 3.58 43.33 3.46
12 13 5.348259 ACCTTTTCATTAAGAAGGGGGAA 57.652 39.130 6.35 0.00 43.33 3.97
13 14 6.250711 GTTACCTTTTCATTAAGAAGGGGGA 58.749 40.000 6.35 3.46 43.33 4.81
14 15 5.124936 CGTTACCTTTTCATTAAGAAGGGGG 59.875 44.000 6.35 7.36 43.33 5.40
15 16 5.392703 GCGTTACCTTTTCATTAAGAAGGGG 60.393 44.000 6.35 8.98 43.33 4.79
18 19 6.371825 AGGAGCGTTACCTTTTCATTAAGAAG 59.628 38.462 0.00 0.00 37.57 2.85
20 21 5.642063 CAGGAGCGTTACCTTTTCATTAAGA 59.358 40.000 0.00 0.00 35.35 2.10
21 22 5.411669 ACAGGAGCGTTACCTTTTCATTAAG 59.588 40.000 0.00 0.00 35.35 1.85
23 24 4.901868 ACAGGAGCGTTACCTTTTCATTA 58.098 39.130 0.00 0.00 35.35 1.90
25 26 3.335579 GACAGGAGCGTTACCTTTTCAT 58.664 45.455 0.00 0.00 35.35 2.57
26 27 2.762745 GACAGGAGCGTTACCTTTTCA 58.237 47.619 0.00 0.00 35.35 2.69
27 28 1.725164 CGACAGGAGCGTTACCTTTTC 59.275 52.381 0.00 0.00 35.35 2.29
29 30 0.037605 CCGACAGGAGCGTTACCTTT 60.038 55.000 0.00 0.00 41.02 3.11
30 31 1.183676 ACCGACAGGAGCGTTACCTT 61.184 55.000 0.00 0.00 41.02 3.50
31 32 0.322816 TACCGACAGGAGCGTTACCT 60.323 55.000 0.00 0.00 41.02 3.08
32 33 0.100146 CTACCGACAGGAGCGTTACC 59.900 60.000 0.00 0.00 41.02 2.85
34 35 0.679002 AGCTACCGACAGGAGCGTTA 60.679 55.000 0.00 0.00 41.99 3.18
36 37 0.679002 TTAGCTACCGACAGGAGCGT 60.679 55.000 0.00 0.00 41.99 5.07
37 38 0.454600 TTTAGCTACCGACAGGAGCG 59.545 55.000 0.00 0.00 41.99 5.03
38 39 2.667473 TTTTAGCTACCGACAGGAGC 57.333 50.000 0.00 0.00 41.02 4.70
76 77 9.216117 GCCGTGTATGGATCTTTTATATACTTT 57.784 33.333 0.00 0.00 0.00 2.66
77 78 7.822822 GGCCGTGTATGGATCTTTTATATACTT 59.177 37.037 0.00 0.00 0.00 2.24
78 79 7.328737 GGCCGTGTATGGATCTTTTATATACT 58.671 38.462 0.00 0.00 0.00 2.12
79 80 6.255020 CGGCCGTGTATGGATCTTTTATATAC 59.745 42.308 19.50 0.00 0.00 1.47
80 81 6.071221 ACGGCCGTGTATGGATCTTTTATATA 60.071 38.462 33.75 0.00 0.00 0.86
81 82 5.175859 CGGCCGTGTATGGATCTTTTATAT 58.824 41.667 19.50 0.00 0.00 0.86
82 83 4.039488 ACGGCCGTGTATGGATCTTTTATA 59.961 41.667 33.75 0.00 0.00 0.98
83 84 3.181458 ACGGCCGTGTATGGATCTTTTAT 60.181 43.478 33.75 0.00 0.00 1.40
84 85 2.168936 ACGGCCGTGTATGGATCTTTTA 59.831 45.455 33.75 0.00 0.00 1.52
85 86 1.065709 ACGGCCGTGTATGGATCTTTT 60.066 47.619 33.75 0.00 0.00 2.27
87 88 1.340248 CTACGGCCGTGTATGGATCTT 59.660 52.381 40.02 11.62 0.00 2.40
88 89 0.959553 CTACGGCCGTGTATGGATCT 59.040 55.000 40.02 12.21 0.00 2.75
89 90 0.956633 TCTACGGCCGTGTATGGATC 59.043 55.000 40.02 0.00 0.00 3.36
92 93 1.779569 GATTCTACGGCCGTGTATGG 58.220 55.000 40.02 22.54 0.00 2.74
93 94 1.268896 ACGATTCTACGGCCGTGTATG 60.269 52.381 40.02 25.02 37.61 2.39
94 95 1.027357 ACGATTCTACGGCCGTGTAT 58.973 50.000 40.02 27.60 37.61 2.29
96 97 1.153901 CACGATTCTACGGCCGTGT 60.154 57.895 40.02 25.03 44.88 4.49
97 98 3.688136 CACGATTCTACGGCCGTG 58.312 61.111 40.02 27.82 44.66 4.94
100 101 2.857592 TCTAACACGATTCTACGGCC 57.142 50.000 0.00 0.00 37.61 6.13
101 102 6.561717 GCTTAATTCTAACACGATTCTACGGC 60.562 42.308 0.00 0.00 37.61 5.68
102 103 6.474427 TGCTTAATTCTAACACGATTCTACGG 59.526 38.462 0.00 0.00 37.61 4.02
104 105 8.321716 CACTGCTTAATTCTAACACGATTCTAC 58.678 37.037 0.00 0.00 0.00 2.59
106 107 6.874134 ACACTGCTTAATTCTAACACGATTCT 59.126 34.615 0.00 0.00 0.00 2.40
107 108 6.955963 CACACTGCTTAATTCTAACACGATTC 59.044 38.462 0.00 0.00 0.00 2.52
108 109 6.426937 ACACACTGCTTAATTCTAACACGATT 59.573 34.615 0.00 0.00 0.00 3.34
110 111 5.294356 ACACACTGCTTAATTCTAACACGA 58.706 37.500 0.00 0.00 0.00 4.35
111 112 5.591643 ACACACTGCTTAATTCTAACACG 57.408 39.130 0.00 0.00 0.00 4.49
112 113 7.884816 TCTACACACTGCTTAATTCTAACAC 57.115 36.000 0.00 0.00 0.00 3.32
113 114 9.502091 AATTCTACACACTGCTTAATTCTAACA 57.498 29.630 0.00 0.00 0.00 2.41
125 126 9.360093 GGAGTATCATATAATTCTACACACTGC 57.640 37.037 0.00 0.00 36.25 4.40
129 130 9.822727 TGAGGGAGTATCATATAATTCTACACA 57.177 33.333 0.00 0.00 36.25 3.72
134 135 8.997734 GGGATTGAGGGAGTATCATATAATTCT 58.002 37.037 0.00 0.00 36.25 2.40
135 136 8.997734 AGGGATTGAGGGAGTATCATATAATTC 58.002 37.037 0.00 0.00 36.25 2.17
137 138 7.570607 GGAGGGATTGAGGGAGTATCATATAAT 59.429 40.741 0.00 0.00 36.25 1.28
138 139 6.903534 GGAGGGATTGAGGGAGTATCATATAA 59.096 42.308 0.00 0.00 36.25 0.98
140 141 5.284582 GGAGGGATTGAGGGAGTATCATAT 58.715 45.833 0.00 0.00 36.25 1.78
141 142 4.512942 GGGAGGGATTGAGGGAGTATCATA 60.513 50.000 0.00 0.00 36.25 2.15
143 144 2.427889 GGGAGGGATTGAGGGAGTATCA 60.428 54.545 0.00 0.00 36.25 2.15
144 145 2.261729 GGGAGGGATTGAGGGAGTATC 58.738 57.143 0.00 0.00 0.00 2.24
146 147 1.023719 TGGGAGGGATTGAGGGAGTA 58.976 55.000 0.00 0.00 0.00 2.59
148 149 0.621571 TGTGGGAGGGATTGAGGGAG 60.622 60.000 0.00 0.00 0.00 4.30
150 151 0.929244 ATTGTGGGAGGGATTGAGGG 59.071 55.000 0.00 0.00 0.00 4.30
152 153 9.236006 CTTAATTATATTGTGGGAGGGATTGAG 57.764 37.037 0.00 0.00 0.00 3.02
153 154 8.954729 TCTTAATTATATTGTGGGAGGGATTGA 58.045 33.333 0.00 0.00 0.00 2.57
154 155 9.759473 ATCTTAATTATATTGTGGGAGGGATTG 57.241 33.333 0.00 0.00 0.00 2.67
156 157 9.759473 CAATCTTAATTATATTGTGGGAGGGAT 57.241 33.333 10.70 0.00 0.00 3.85
157 158 8.732854 ACAATCTTAATTATATTGTGGGAGGGA 58.267 33.333 18.71 0.00 41.14 4.20
158 159 8.940397 ACAATCTTAATTATATTGTGGGAGGG 57.060 34.615 18.71 0.62 41.14 4.30
190 191 8.636213 CCCACAATATAAGATCATTTTCAAGCT 58.364 33.333 0.00 0.00 0.00 3.74
191 192 7.869429 CCCCACAATATAAGATCATTTTCAAGC 59.131 37.037 0.00 0.00 0.00 4.01
192 193 7.869429 GCCCCACAATATAAGATCATTTTCAAG 59.131 37.037 0.00 0.00 0.00 3.02
193 194 7.469870 CGCCCCACAATATAAGATCATTTTCAA 60.470 37.037 0.00 0.00 0.00 2.69
194 195 6.016360 CGCCCCACAATATAAGATCATTTTCA 60.016 38.462 0.00 0.00 0.00 2.69
195 196 6.381801 CGCCCCACAATATAAGATCATTTTC 58.618 40.000 0.00 0.00 0.00 2.29
197 198 4.766891 CCGCCCCACAATATAAGATCATTT 59.233 41.667 0.00 0.00 0.00 2.32
198 199 4.042809 TCCGCCCCACAATATAAGATCATT 59.957 41.667 0.00 0.00 0.00 2.57
199 200 3.587061 TCCGCCCCACAATATAAGATCAT 59.413 43.478 0.00 0.00 0.00 2.45
204 205 2.039746 TCCATCCGCCCCACAATATAAG 59.960 50.000 0.00 0.00 0.00 1.73
206 207 1.628340 CTCCATCCGCCCCACAATATA 59.372 52.381 0.00 0.00 0.00 0.86
207 208 0.401738 CTCCATCCGCCCCACAATAT 59.598 55.000 0.00 0.00 0.00 1.28
208 209 0.986019 ACTCCATCCGCCCCACAATA 60.986 55.000 0.00 0.00 0.00 1.90
210 211 1.613928 TACTCCATCCGCCCCACAA 60.614 57.895 0.00 0.00 0.00 3.33
211 212 2.039787 TACTCCATCCGCCCCACA 59.960 61.111 0.00 0.00 0.00 4.17
212 213 1.623542 AACTACTCCATCCGCCCCAC 61.624 60.000 0.00 0.00 0.00 4.61
213 214 1.306654 AACTACTCCATCCGCCCCA 60.307 57.895 0.00 0.00 0.00 4.96
214 215 1.146263 CAACTACTCCATCCGCCCC 59.854 63.158 0.00 0.00 0.00 5.80
216 217 2.622064 AATCAACTACTCCATCCGCC 57.378 50.000 0.00 0.00 0.00 6.13
217 218 7.441458 ACTTTTATAATCAACTACTCCATCCGC 59.559 37.037 0.00 0.00 0.00 5.54
218 219 8.765219 CACTTTTATAATCAACTACTCCATCCG 58.235 37.037 0.00 0.00 0.00 4.18
219 220 9.832445 TCACTTTTATAATCAACTACTCCATCC 57.168 33.333 0.00 0.00 0.00 3.51
270 271 9.412390 GCGAAACATTGCATCTAATTAATTTTG 57.588 29.630 5.91 3.91 0.00 2.44
271 272 9.149225 TGCGAAACATTGCATCTAATTAATTTT 57.851 25.926 5.91 0.00 35.90 1.82
273 274 8.700722 TTGCGAAACATTGCATCTAATTAATT 57.299 26.923 5.89 5.89 41.42 1.40
274 275 8.594687 GTTTGCGAAACATTGCATCTAATTAAT 58.405 29.630 0.00 0.00 41.42 1.40
277 278 6.158598 AGTTTGCGAAACATTGCATCTAATT 58.841 32.000 12.28 0.00 43.79 1.40
278 279 5.713025 AGTTTGCGAAACATTGCATCTAAT 58.287 33.333 12.28 0.00 43.79 1.73
281 282 3.648339 AGTTTGCGAAACATTGCATCT 57.352 38.095 12.28 0.00 43.79 2.90
282 283 7.684062 AATATAGTTTGCGAAACATTGCATC 57.316 32.000 12.28 0.00 43.79 3.91
283 284 7.464444 GCAAATATAGTTTGCGAAACATTGCAT 60.464 33.333 9.40 8.91 44.13 3.96
284 285 6.183360 GCAAATATAGTTTGCGAAACATTGCA 60.183 34.615 9.40 0.00 44.13 4.08
285 286 6.177822 GCAAATATAGTTTGCGAAACATTGC 58.822 36.000 9.40 13.71 44.13 3.56
296 297 7.599630 AGCACCAATTTGCAAATATAGTTTG 57.400 32.000 24.35 17.40 45.62 2.93
297 298 7.661027 ACAAGCACCAATTTGCAAATATAGTTT 59.339 29.630 24.35 15.02 45.62 2.66
299 300 6.591062 CACAAGCACCAATTTGCAAATATAGT 59.409 34.615 24.35 17.90 45.62 2.12
301 302 6.462500 ACACAAGCACCAATTTGCAAATATA 58.538 32.000 24.35 0.00 45.62 0.86
302 303 5.307204 ACACAAGCACCAATTTGCAAATAT 58.693 33.333 24.35 12.14 45.62 1.28
304 305 3.543665 ACACAAGCACCAATTTGCAAAT 58.456 36.364 18.99 18.99 45.62 2.32
306 307 2.687700 ACACAAGCACCAATTTGCAA 57.312 40.000 0.00 0.00 45.62 4.08
307 308 4.333913 AATACACAAGCACCAATTTGCA 57.666 36.364 4.99 0.00 45.62 4.08
308 309 6.183360 CCATTAATACACAAGCACCAATTTGC 60.183 38.462 0.00 0.00 43.34 3.68
309 310 7.095910 TCCATTAATACACAAGCACCAATTTG 58.904 34.615 0.00 0.00 0.00 2.32
312 313 6.186957 TCTCCATTAATACACAAGCACCAAT 58.813 36.000 0.00 0.00 0.00 3.16
313 314 5.565509 TCTCCATTAATACACAAGCACCAA 58.434 37.500 0.00 0.00 0.00 3.67
314 315 5.172687 TCTCCATTAATACACAAGCACCA 57.827 39.130 0.00 0.00 0.00 4.17
316 317 6.546395 CAGTTCTCCATTAATACACAAGCAC 58.454 40.000 0.00 0.00 0.00 4.40
318 319 5.123820 TGCAGTTCTCCATTAATACACAAGC 59.876 40.000 0.00 0.00 0.00 4.01
319 320 6.741992 TGCAGTTCTCCATTAATACACAAG 57.258 37.500 0.00 0.00 0.00 3.16
320 321 6.404623 GCATGCAGTTCTCCATTAATACACAA 60.405 38.462 14.21 0.00 0.00 3.33
321 322 5.066375 GCATGCAGTTCTCCATTAATACACA 59.934 40.000 14.21 0.00 0.00 3.72
322 323 5.066375 TGCATGCAGTTCTCCATTAATACAC 59.934 40.000 18.46 0.00 0.00 2.90
323 324 5.192176 TGCATGCAGTTCTCCATTAATACA 58.808 37.500 18.46 0.00 0.00 2.29
324 325 5.756195 TGCATGCAGTTCTCCATTAATAC 57.244 39.130 18.46 0.00 0.00 1.89
325 326 5.829391 ACATGCATGCAGTTCTCCATTAATA 59.171 36.000 26.69 0.00 0.00 0.98
326 327 4.647853 ACATGCATGCAGTTCTCCATTAAT 59.352 37.500 26.69 0.61 0.00 1.40
327 328 4.018490 ACATGCATGCAGTTCTCCATTAA 58.982 39.130 26.69 0.00 0.00 1.40
328 329 3.623703 ACATGCATGCAGTTCTCCATTA 58.376 40.909 26.69 0.00 0.00 1.90
329 330 2.453521 ACATGCATGCAGTTCTCCATT 58.546 42.857 26.69 2.26 0.00 3.16
331 332 2.785540 TACATGCATGCAGTTCTCCA 57.214 45.000 26.69 6.13 0.00 3.86
332 333 2.947652 ACATACATGCATGCAGTTCTCC 59.052 45.455 26.69 0.00 0.00 3.71
333 334 3.376234 ACACATACATGCATGCAGTTCTC 59.624 43.478 26.69 0.00 0.00 2.87
335 336 3.770263 ACACATACATGCATGCAGTTC 57.230 42.857 26.69 0.00 0.00 3.01
337 338 6.311200 CGTATATACACATACATGCATGCAGT 59.689 38.462 26.69 23.37 31.96 4.40
338 339 6.237915 CCGTATATACACATACATGCATGCAG 60.238 42.308 26.69 19.15 31.96 4.41
341 342 7.035612 ACTCCGTATATACACATACATGCATG 58.964 38.462 25.09 25.09 31.96 4.06
344 345 8.975410 TTTACTCCGTATATACACATACATGC 57.025 34.615 13.22 0.00 31.96 4.06
360 361 9.282569 ACTTTCTATCGTATCTATTTACTCCGT 57.717 33.333 0.00 0.00 0.00 4.69
369 370 9.221933 CCAGAGTGTACTTTCTATCGTATCTAT 57.778 37.037 0.00 0.00 0.00 1.98
370 371 8.209584 ACCAGAGTGTACTTTCTATCGTATCTA 58.790 37.037 0.00 0.00 0.00 1.98
371 372 7.055378 ACCAGAGTGTACTTTCTATCGTATCT 58.945 38.462 0.00 0.00 0.00 1.98
372 373 7.261829 ACCAGAGTGTACTTTCTATCGTATC 57.738 40.000 0.00 0.00 0.00 2.24
373 374 6.262720 GGACCAGAGTGTACTTTCTATCGTAT 59.737 42.308 0.00 0.00 0.00 3.06
374 375 5.587844 GGACCAGAGTGTACTTTCTATCGTA 59.412 44.000 0.00 0.00 0.00 3.43
375 376 4.398673 GGACCAGAGTGTACTTTCTATCGT 59.601 45.833 0.00 0.00 0.00 3.73
376 377 4.496010 CGGACCAGAGTGTACTTTCTATCG 60.496 50.000 0.00 0.00 0.00 2.92
378 379 3.700038 CCGGACCAGAGTGTACTTTCTAT 59.300 47.826 0.00 0.00 0.00 1.98
379 380 3.087031 CCGGACCAGAGTGTACTTTCTA 58.913 50.000 0.00 0.00 0.00 2.10
380 381 1.893801 CCGGACCAGAGTGTACTTTCT 59.106 52.381 0.00 0.00 0.00 2.52
381 382 1.617357 ACCGGACCAGAGTGTACTTTC 59.383 52.381 9.46 0.00 0.00 2.62
382 383 1.713297 ACCGGACCAGAGTGTACTTT 58.287 50.000 9.46 0.00 0.00 2.66
384 385 2.560105 GTTTACCGGACCAGAGTGTACT 59.440 50.000 9.46 0.00 0.00 2.73
386 387 2.596346 TGTTTACCGGACCAGAGTGTA 58.404 47.619 9.46 0.00 0.00 2.90
388 389 2.413837 CTTGTTTACCGGACCAGAGTG 58.586 52.381 9.46 0.00 0.00 3.51
389 390 1.270678 GCTTGTTTACCGGACCAGAGT 60.271 52.381 9.46 0.00 0.00 3.24
390 391 1.270625 TGCTTGTTTACCGGACCAGAG 60.271 52.381 9.46 0.00 0.00 3.35
391 392 0.759959 TGCTTGTTTACCGGACCAGA 59.240 50.000 9.46 0.00 0.00 3.86
393 394 1.141254 TCTTGCTTGTTTACCGGACCA 59.859 47.619 9.46 0.00 0.00 4.02
394 395 1.886886 TCTTGCTTGTTTACCGGACC 58.113 50.000 9.46 0.00 0.00 4.46
395 396 3.974871 TTTCTTGCTTGTTTACCGGAC 57.025 42.857 9.46 0.00 0.00 4.79
397 398 4.561735 TCTTTTCTTGCTTGTTTACCGG 57.438 40.909 0.00 0.00 0.00 5.28
399 400 8.474006 TTCTTTTCTTTTCTTGCTTGTTTACC 57.526 30.769 0.00 0.00 0.00 2.85
402 403 9.271828 TCTTTTCTTTTCTTTTCTTGCTTGTTT 57.728 25.926 0.00 0.00 0.00 2.83
405 406 8.693542 TCTCTTTTCTTTTCTTTTCTTGCTTG 57.306 30.769 0.00 0.00 0.00 4.01
407 408 9.310716 CATTCTCTTTTCTTTTCTTTTCTTGCT 57.689 29.630 0.00 0.00 0.00 3.91
425 426 9.794685 GTTCTTGTTCTTCTTTTTCATTCTCTT 57.205 29.630 0.00 0.00 0.00 2.85
426 427 8.960591 TGTTCTTGTTCTTCTTTTTCATTCTCT 58.039 29.630 0.00 0.00 0.00 3.10
427 428 9.230932 CTGTTCTTGTTCTTCTTTTTCATTCTC 57.769 33.333 0.00 0.00 0.00 2.87
430 431 9.927668 TTTCTGTTCTTGTTCTTCTTTTTCATT 57.072 25.926 0.00 0.00 0.00 2.57
432 433 7.537306 CGTTTCTGTTCTTGTTCTTCTTTTTCA 59.463 33.333 0.00 0.00 0.00 2.69
433 434 7.749126 TCGTTTCTGTTCTTGTTCTTCTTTTTC 59.251 33.333 0.00 0.00 0.00 2.29
435 436 7.141100 TCGTTTCTGTTCTTGTTCTTCTTTT 57.859 32.000 0.00 0.00 0.00 2.27
436 437 6.737254 TCGTTTCTGTTCTTGTTCTTCTTT 57.263 33.333 0.00 0.00 0.00 2.52
438 439 6.543736 GTTTCGTTTCTGTTCTTGTTCTTCT 58.456 36.000 0.00 0.00 0.00 2.85
439 440 5.448162 CGTTTCGTTTCTGTTCTTGTTCTTC 59.552 40.000 0.00 0.00 0.00 2.87
441 442 4.201783 CCGTTTCGTTTCTGTTCTTGTTCT 60.202 41.667 0.00 0.00 0.00 3.01
442 443 4.026407 CCGTTTCGTTTCTGTTCTTGTTC 58.974 43.478 0.00 0.00 0.00 3.18
444 445 3.264104 TCCGTTTCGTTTCTGTTCTTGT 58.736 40.909 0.00 0.00 0.00 3.16
445 446 3.308866 ACTCCGTTTCGTTTCTGTTCTTG 59.691 43.478 0.00 0.00 0.00 3.02
447 448 3.121544 GACTCCGTTTCGTTTCTGTTCT 58.878 45.455 0.00 0.00 0.00 3.01
448 449 2.861935 TGACTCCGTTTCGTTTCTGTTC 59.138 45.455 0.00 0.00 0.00 3.18
449 450 2.896168 TGACTCCGTTTCGTTTCTGTT 58.104 42.857 0.00 0.00 0.00 3.16
450 451 2.589798 TGACTCCGTTTCGTTTCTGT 57.410 45.000 0.00 0.00 0.00 3.41
451 452 3.318017 AGATGACTCCGTTTCGTTTCTG 58.682 45.455 0.00 0.00 0.00 3.02
452 453 3.662247 AGATGACTCCGTTTCGTTTCT 57.338 42.857 0.00 0.00 0.00 2.52
453 454 6.404712 AAATAGATGACTCCGTTTCGTTTC 57.595 37.500 0.00 0.00 0.00 2.78
455 456 5.121768 CCAAAATAGATGACTCCGTTTCGTT 59.878 40.000 0.00 0.00 0.00 3.85
456 457 4.630069 CCAAAATAGATGACTCCGTTTCGT 59.370 41.667 0.00 0.00 0.00 3.85
457 458 4.868171 TCCAAAATAGATGACTCCGTTTCG 59.132 41.667 0.00 0.00 0.00 3.46
458 459 6.543736 GTTCCAAAATAGATGACTCCGTTTC 58.456 40.000 0.00 0.00 0.00 2.78
459 460 5.121768 CGTTCCAAAATAGATGACTCCGTTT 59.878 40.000 0.00 0.00 0.00 3.60
460 461 4.630069 CGTTCCAAAATAGATGACTCCGTT 59.370 41.667 0.00 0.00 0.00 4.44
462 463 3.555956 CCGTTCCAAAATAGATGACTCCG 59.444 47.826 0.00 0.00 0.00 4.63
463 464 4.766375 TCCGTTCCAAAATAGATGACTCC 58.234 43.478 0.00 0.00 0.00 3.85
464 465 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
465 466 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
466 467 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
469 470 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
470 471 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
471 472 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
472 473 7.731688 AGTATATACTCCCTCCGTTCCAAAATA 59.268 37.037 9.71 0.00 0.00 1.40
476 477 5.070823 AGTATATACTCCCTCCGTTCCAA 57.929 43.478 9.71 0.00 0.00 3.53
478 479 4.633565 CGTAGTATATACTCCCTCCGTTCC 59.366 50.000 18.68 0.00 37.73 3.62
479 480 5.241662 ACGTAGTATATACTCCCTCCGTTC 58.758 45.833 18.68 0.47 41.94 3.95
480 481 5.234466 ACGTAGTATATACTCCCTCCGTT 57.766 43.478 18.68 0.00 41.94 4.44
501 502 0.460284 CATGGTGGGTCGCTGTAGAC 60.460 60.000 0.00 0.00 40.25 2.59
502 503 1.613317 CCATGGTGGGTCGCTGTAGA 61.613 60.000 2.57 0.00 32.67 2.59
503 504 1.153369 CCATGGTGGGTCGCTGTAG 60.153 63.158 2.57 0.00 32.67 2.74
504 505 0.980754 ATCCATGGTGGGTCGCTGTA 60.981 55.000 12.58 0.00 38.32 2.74
505 506 2.257409 GATCCATGGTGGGTCGCTGT 62.257 60.000 12.58 0.00 37.99 4.40
506 507 1.524621 GATCCATGGTGGGTCGCTG 60.525 63.158 12.58 0.00 37.99 5.18
507 508 2.911143 GATCCATGGTGGGTCGCT 59.089 61.111 12.58 0.00 37.99 4.93
512 513 1.472480 GTCGTTTTGATCCATGGTGGG 59.528 52.381 12.58 0.00 38.32 4.61
513 514 1.472480 GGTCGTTTTGATCCATGGTGG 59.528 52.381 12.58 0.00 39.43 4.61
514 515 2.162208 CAGGTCGTTTTGATCCATGGTG 59.838 50.000 12.58 0.00 0.00 4.17
515 516 2.436417 CAGGTCGTTTTGATCCATGGT 58.564 47.619 12.58 0.00 0.00 3.55
516 517 1.745087 CCAGGTCGTTTTGATCCATGG 59.255 52.381 4.97 4.97 0.00 3.66
517 518 1.133025 GCCAGGTCGTTTTGATCCATG 59.867 52.381 0.00 0.00 0.00 3.66
518 519 1.004745 AGCCAGGTCGTTTTGATCCAT 59.995 47.619 0.00 0.00 0.00 3.41
519 520 0.400213 AGCCAGGTCGTTTTGATCCA 59.600 50.000 0.00 0.00 0.00 3.41
520 521 1.200020 CAAGCCAGGTCGTTTTGATCC 59.800 52.381 0.00 0.00 0.00 3.36
522 523 1.880027 GTCAAGCCAGGTCGTTTTGAT 59.120 47.619 0.00 0.00 31.28 2.57
524 525 0.310854 GGTCAAGCCAGGTCGTTTTG 59.689 55.000 0.00 0.00 37.17 2.44
526 527 1.053424 TAGGTCAAGCCAGGTCGTTT 58.947 50.000 0.00 0.00 40.61 3.60
527 528 1.053424 TTAGGTCAAGCCAGGTCGTT 58.947 50.000 0.00 0.00 40.61 3.85
528 529 1.053424 TTTAGGTCAAGCCAGGTCGT 58.947 50.000 0.00 0.00 40.61 4.34
529 530 1.270625 TGTTTAGGTCAAGCCAGGTCG 60.271 52.381 0.00 0.00 40.61 4.79
530 531 2.427506 CTGTTTAGGTCAAGCCAGGTC 58.572 52.381 0.00 0.00 40.61 3.85
531 532 1.073923 CCTGTTTAGGTCAAGCCAGGT 59.926 52.381 0.00 0.00 39.39 4.00
532 533 1.351017 TCCTGTTTAGGTCAAGCCAGG 59.649 52.381 0.00 0.00 44.88 4.45
533 534 2.427506 GTCCTGTTTAGGTCAAGCCAG 58.572 52.381 0.00 0.00 44.88 4.85
534 535 1.073284 GGTCCTGTTTAGGTCAAGCCA 59.927 52.381 0.00 0.00 44.88 4.75
537 538 3.326747 CTTCGGTCCTGTTTAGGTCAAG 58.673 50.000 0.00 0.00 44.88 3.02
539 540 1.001633 GCTTCGGTCCTGTTTAGGTCA 59.998 52.381 0.00 0.00 44.88 4.02
540 541 1.001633 TGCTTCGGTCCTGTTTAGGTC 59.998 52.381 0.00 0.00 44.88 3.85
541 542 1.053424 TGCTTCGGTCCTGTTTAGGT 58.947 50.000 0.00 0.00 44.88 3.08
542 543 2.178912 TTGCTTCGGTCCTGTTTAGG 57.821 50.000 0.00 0.00 46.06 2.69
543 544 3.186613 GTCTTTGCTTCGGTCCTGTTTAG 59.813 47.826 0.00 0.00 0.00 1.85
545 546 1.947456 GTCTTTGCTTCGGTCCTGTTT 59.053 47.619 0.00 0.00 0.00 2.83
547 548 0.250338 GGTCTTTGCTTCGGTCCTGT 60.250 55.000 0.00 0.00 0.00 4.00
549 550 1.375326 GGGTCTTTGCTTCGGTCCT 59.625 57.895 0.00 0.00 0.00 3.85
551 552 2.007608 GTATGGGTCTTTGCTTCGGTC 58.992 52.381 0.00 0.00 0.00 4.79
552 553 1.349688 TGTATGGGTCTTTGCTTCGGT 59.650 47.619 0.00 0.00 0.00 4.69
553 554 2.107950 TGTATGGGTCTTTGCTTCGG 57.892 50.000 0.00 0.00 0.00 4.30
554 555 3.125316 GTCTTGTATGGGTCTTTGCTTCG 59.875 47.826 0.00 0.00 0.00 3.79
555 556 3.440522 GGTCTTGTATGGGTCTTTGCTTC 59.559 47.826 0.00 0.00 0.00 3.86
558 559 2.749621 CTGGTCTTGTATGGGTCTTTGC 59.250 50.000 0.00 0.00 0.00 3.68
559 560 4.286297 TCTGGTCTTGTATGGGTCTTTG 57.714 45.455 0.00 0.00 0.00 2.77
561 562 4.536090 TGATTCTGGTCTTGTATGGGTCTT 59.464 41.667 0.00 0.00 0.00 3.01
562 563 4.104086 TGATTCTGGTCTTGTATGGGTCT 58.896 43.478 0.00 0.00 0.00 3.85
563 564 4.487714 TGATTCTGGTCTTGTATGGGTC 57.512 45.455 0.00 0.00 0.00 4.46
564 565 5.455326 GCTATGATTCTGGTCTTGTATGGGT 60.455 44.000 0.00 0.00 0.00 4.51
565 566 4.999950 GCTATGATTCTGGTCTTGTATGGG 59.000 45.833 0.00 0.00 0.00 4.00
566 567 5.614308 TGCTATGATTCTGGTCTTGTATGG 58.386 41.667 0.00 0.00 0.00 2.74
567 568 7.308408 CCATTGCTATGATTCTGGTCTTGTATG 60.308 40.741 9.87 0.00 33.37 2.39
568 569 6.713903 CCATTGCTATGATTCTGGTCTTGTAT 59.286 38.462 9.87 0.00 33.37 2.29
570 571 4.885907 CCATTGCTATGATTCTGGTCTTGT 59.114 41.667 9.87 0.00 33.37 3.16
572 573 3.887716 GCCATTGCTATGATTCTGGTCTT 59.112 43.478 9.87 0.00 33.37 3.01
573 574 3.484407 GCCATTGCTATGATTCTGGTCT 58.516 45.455 9.87 0.00 33.37 3.85
574 575 2.555757 GGCCATTGCTATGATTCTGGTC 59.444 50.000 9.87 0.00 37.74 4.02
575 576 2.590821 GGCCATTGCTATGATTCTGGT 58.409 47.619 9.87 0.00 37.74 4.00
577 578 1.538512 CCGGCCATTGCTATGATTCTG 59.461 52.381 9.87 3.83 37.74 3.02
578 579 1.143684 ACCGGCCATTGCTATGATTCT 59.856 47.619 9.87 0.00 37.74 2.40
579 580 1.537202 GACCGGCCATTGCTATGATTC 59.463 52.381 9.87 0.00 37.74 2.52
580 581 1.609208 GACCGGCCATTGCTATGATT 58.391 50.000 9.87 0.00 37.74 2.57
583 584 0.603707 ATCGACCGGCCATTGCTATG 60.604 55.000 0.00 0.68 37.74 2.23
584 585 0.603707 CATCGACCGGCCATTGCTAT 60.604 55.000 0.00 0.00 37.74 2.97
585 586 1.227527 CATCGACCGGCCATTGCTA 60.228 57.895 0.00 0.00 37.74 3.49
586 587 2.514592 CATCGACCGGCCATTGCT 60.515 61.111 0.00 0.00 37.74 3.91
587 588 3.585990 CCATCGACCGGCCATTGC 61.586 66.667 0.00 0.00 0.00 3.56
588 589 1.889105 CTCCATCGACCGGCCATTG 60.889 63.158 0.00 0.00 0.00 2.82
589 590 2.505982 CTCCATCGACCGGCCATT 59.494 61.111 0.00 0.00 0.00 3.16
590 591 4.241555 GCTCCATCGACCGGCCAT 62.242 66.667 0.00 0.00 0.00 4.40
592 593 4.899239 CAGCTCCATCGACCGGCC 62.899 72.222 0.00 0.00 0.00 6.13
593 594 2.650813 ATTCAGCTCCATCGACCGGC 62.651 60.000 0.00 0.00 0.00 6.13
594 595 0.673985 TATTCAGCTCCATCGACCGG 59.326 55.000 0.00 0.00 0.00 5.28
595 596 2.600731 GATATTCAGCTCCATCGACCG 58.399 52.381 0.00 0.00 0.00 4.79
596 597 2.300152 TGGATATTCAGCTCCATCGACC 59.700 50.000 0.00 0.00 36.63 4.79
597 598 3.667497 TGGATATTCAGCTCCATCGAC 57.333 47.619 0.00 0.00 36.63 4.20
598 599 3.555795 GCTTGGATATTCAGCTCCATCGA 60.556 47.826 0.00 0.00 41.09 3.59
599 600 2.740981 GCTTGGATATTCAGCTCCATCG 59.259 50.000 0.00 0.00 41.09 3.84
600 601 2.740981 CGCTTGGATATTCAGCTCCATC 59.259 50.000 0.00 0.00 41.09 3.51
601 602 2.551721 CCGCTTGGATATTCAGCTCCAT 60.552 50.000 0.00 0.00 41.09 3.41
602 603 1.202687 CCGCTTGGATATTCAGCTCCA 60.203 52.381 0.00 0.00 39.78 3.86
603 604 1.517242 CCGCTTGGATATTCAGCTCC 58.483 55.000 0.00 0.00 33.02 4.70
604 605 1.517242 CCCGCTTGGATATTCAGCTC 58.483 55.000 0.00 0.00 35.39 4.09
606 607 0.819259 TGCCCGCTTGGATATTCAGC 60.819 55.000 0.00 0.00 35.39 4.26
607 608 0.947244 GTGCCCGCTTGGATATTCAG 59.053 55.000 0.00 0.00 35.39 3.02
608 609 0.813610 CGTGCCCGCTTGGATATTCA 60.814 55.000 0.00 0.00 35.39 2.57
610 611 0.466543 TACGTGCCCGCTTGGATATT 59.533 50.000 0.00 0.00 37.70 1.28
611 612 0.033504 CTACGTGCCCGCTTGGATAT 59.966 55.000 0.00 0.00 37.70 1.63
612 613 1.440060 CTACGTGCCCGCTTGGATA 59.560 57.895 0.00 0.00 37.70 2.59
613 614 2.186903 CTACGTGCCCGCTTGGAT 59.813 61.111 0.00 0.00 37.70 3.41
615 616 4.760047 AGCTACGTGCCCGCTTGG 62.760 66.667 0.00 0.00 44.23 3.61
616 617 3.188786 GAGCTACGTGCCCGCTTG 61.189 66.667 0.00 0.00 44.23 4.01
617 618 4.452733 GGAGCTACGTGCCCGCTT 62.453 66.667 0.00 0.00 44.23 4.68
620 621 3.001902 TTCAGGAGCTACGTGCCCG 62.002 63.158 0.00 0.00 44.23 6.13
621 622 1.448013 GTTCAGGAGCTACGTGCCC 60.448 63.158 0.00 4.09 44.23 5.36
623 624 1.508632 TTTGTTCAGGAGCTACGTGC 58.491 50.000 0.00 0.00 43.29 5.34
625 626 3.335579 GGAATTTGTTCAGGAGCTACGT 58.664 45.455 0.00 0.00 0.00 3.57
626 627 2.348666 CGGAATTTGTTCAGGAGCTACG 59.651 50.000 0.00 0.00 0.00 3.51
656 657 5.045213 ACAACACAGAGAGAGAGAGAGGATA 60.045 44.000 0.00 0.00 0.00 2.59
657 658 4.263905 ACAACACAGAGAGAGAGAGAGGAT 60.264 45.833 0.00 0.00 0.00 3.24
658 659 3.073798 ACAACACAGAGAGAGAGAGAGGA 59.926 47.826 0.00 0.00 0.00 3.71
660 661 3.820467 ACACAACACAGAGAGAGAGAGAG 59.180 47.826 0.00 0.00 0.00 3.20
661 662 3.826524 ACACAACACAGAGAGAGAGAGA 58.173 45.455 0.00 0.00 0.00 3.10
663 664 4.393371 CGATACACAACACAGAGAGAGAGA 59.607 45.833 0.00 0.00 0.00 3.10
748 767 0.035056 GAAAGCCTTGGCCTAGCAGA 60.035 55.000 8.91 0.00 0.00 4.26
749 768 1.034292 GGAAAGCCTTGGCCTAGCAG 61.034 60.000 8.91 0.00 0.00 4.24
750 769 1.000896 GGAAAGCCTTGGCCTAGCA 60.001 57.895 8.91 0.00 0.00 3.49
751 770 1.304617 AGGAAAGCCTTGGCCTAGC 59.695 57.895 8.91 6.39 43.90 3.42
819 838 0.108804 TTCAGCTTCGATCGGTCCAC 60.109 55.000 16.41 0.89 0.00 4.02
906 926 1.591594 CCGTTCATGGATCCGGTCG 60.592 63.158 7.39 10.81 35.78 4.79
985 1032 1.757699 GTCGGCAGAGGTTCCTAAGAT 59.242 52.381 0.00 0.00 0.00 2.40
1025 1092 2.438951 CTTGTTGGCCGCCATGCTTT 62.439 55.000 14.30 0.00 31.53 3.51
1036 1103 2.328099 CCCGTGAGCTCTTGTTGGC 61.328 63.158 16.19 0.00 0.00 4.52
1075 1142 3.114616 GGTCGTCGTCGTCGGAGA 61.115 66.667 11.74 0.00 38.33 3.71
1201 1268 0.459585 CGGGGGATGTACACGTGAAG 60.460 60.000 25.01 0.00 0.00 3.02
1206 1273 2.103538 CGACGGGGGATGTACACG 59.896 66.667 0.00 0.00 0.00 4.49
1233 1300 3.834799 CCTACGACGAGGGGGTGC 61.835 72.222 0.00 0.00 32.39 5.01
1374 1441 1.617850 GAGCTGTCGATGATCTCCCAT 59.382 52.381 0.00 0.00 0.00 4.00
1758 1825 3.146618 TGAAGATTAAGAGACGACGGC 57.853 47.619 0.00 0.00 0.00 5.68
1889 1956 4.796231 GAGCGACGTCGGGCACAT 62.796 66.667 36.13 11.55 40.23 3.21
2092 2173 3.760035 ACCGCTACCACCTCGCAG 61.760 66.667 0.00 0.00 0.00 5.18
2095 2176 4.814294 GGCACCGCTACCACCTCG 62.814 72.222 0.00 0.00 0.00 4.63
2157 2238 2.034687 ATCCACGCCTTTGCTGCT 59.965 55.556 0.00 0.00 34.43 4.24
2202 2283 2.380410 GCACTTGTACTCCGCCACG 61.380 63.158 0.00 0.00 0.00 4.94
2293 2380 4.196193 CACCAGTTTCTTCACTTACACCA 58.804 43.478 0.00 0.00 0.00 4.17
2328 2415 3.070159 ACAGATATGAGAACATCGTGGGG 59.930 47.826 0.00 0.00 37.87 4.96
2329 2416 4.327982 ACAGATATGAGAACATCGTGGG 57.672 45.455 0.00 0.00 37.87 4.61
2347 2434 8.268850 ACCTACATATTCAAAAGCAAGTACAG 57.731 34.615 0.00 0.00 0.00 2.74
2366 2453 8.208224 ACATTAATGATATGACCGAAACCTACA 58.792 33.333 22.16 0.00 0.00 2.74
2376 2463 7.581213 TGTTTCCCACATTAATGATATGACC 57.419 36.000 22.16 5.62 0.00 4.02
2387 2474 4.142491 CGCTTAGCATTGTTTCCCACATTA 60.142 41.667 4.70 0.00 34.43 1.90
2462 2668 4.324402 CGGAAAAAGAAGCATTGTACATGC 59.676 41.667 17.36 17.36 44.85 4.06
2551 2761 4.543692 CTCACTGGATTTTGCAAACTGAG 58.456 43.478 12.39 10.64 0.00 3.35
2565 2775 4.935578 TGATTAGTCTTCTCCTCACTGGA 58.064 43.478 0.00 0.00 43.86 3.86
2569 2779 8.329203 ACAAATTTGATTAGTCTTCTCCTCAC 57.671 34.615 24.64 0.00 0.00 3.51
2615 2825 3.319122 GGTATTCCATCAAGCCAATGGTC 59.681 47.826 0.00 0.00 43.52 4.02
2616 2826 3.299503 GGTATTCCATCAAGCCAATGGT 58.700 45.455 0.00 0.00 43.52 3.55
2617 2827 3.298619 TGGTATTCCATCAAGCCAATGG 58.701 45.455 0.00 0.00 44.27 3.16
2618 2828 5.341872 TTTGGTATTCCATCAAGCCAATG 57.658 39.130 0.00 0.00 43.91 2.82
2619 2829 7.290714 ACATATTTGGTATTCCATCAAGCCAAT 59.709 33.333 0.00 0.00 43.91 3.16
2620 2830 6.610830 ACATATTTGGTATTCCATCAAGCCAA 59.389 34.615 0.00 0.00 43.91 4.52
2621 2831 6.135454 ACATATTTGGTATTCCATCAAGCCA 58.865 36.000 0.00 0.00 43.91 4.75
2622 2832 6.655078 ACATATTTGGTATTCCATCAAGCC 57.345 37.500 0.00 0.00 43.91 4.35
2623 2833 9.683069 CTAAACATATTTGGTATTCCATCAAGC 57.317 33.333 0.00 0.00 43.91 4.01
2671 2881 0.742505 CGTAGTGGCATTCCTCGGTA 59.257 55.000 0.00 0.00 0.00 4.02
2682 2892 4.499357 CCATAGTTAGTTCCTCGTAGTGGC 60.499 50.000 0.00 0.00 41.61 5.01
2694 2904 5.867716 GTGTGACATTCGTCCATAGTTAGTT 59.132 40.000 0.00 0.00 41.85 2.24
2738 2948 1.577328 ATCGCAAGGTGTGGCTTTCG 61.577 55.000 0.00 0.00 38.47 3.46
2750 2960 1.927174 CGTCCCTCAACTAATCGCAAG 59.073 52.381 0.00 0.00 0.00 4.01
2755 2965 5.699458 TGAAGTTTTCGTCCCTCAACTAATC 59.301 40.000 0.00 0.00 0.00 1.75
2822 3032 0.249657 GAGGAAGCGGGTATGAGCAG 60.250 60.000 0.00 0.00 35.48 4.24
2872 3082 5.490139 AGAACTGAGTTGTGTTGATGTTG 57.510 39.130 0.90 0.00 0.00 3.33
2875 3085 7.172190 ACAGATTAGAACTGAGTTGTGTTGATG 59.828 37.037 0.90 0.00 38.55 3.07
2877 3087 6.582636 ACAGATTAGAACTGAGTTGTGTTGA 58.417 36.000 0.90 0.00 38.55 3.18
2883 3093 7.831753 TCCTCTAACAGATTAGAACTGAGTTG 58.168 38.462 0.90 0.00 44.94 3.16
2922 3132 7.649306 GTGCACATATTTCTTACCATGATTTCC 59.351 37.037 13.17 0.00 0.00 3.13
2956 3166 5.065731 CCAGATGCCTTGCTTTTAACTCTAG 59.934 44.000 0.00 0.00 0.00 2.43
3059 3269 1.204941 CACCAAGTCTAGGAACTCCCG 59.795 57.143 0.00 0.00 41.75 5.14
3082 3292 1.412710 CACCTTTCCATCGCTAGCCTA 59.587 52.381 9.66 0.00 0.00 3.93
3086 3296 1.936547 GAAGCACCTTTCCATCGCTAG 59.063 52.381 0.00 0.00 31.36 3.42
3088 3298 0.036732 TGAAGCACCTTTCCATCGCT 59.963 50.000 0.00 0.00 33.45 4.93
3124 3334 0.973632 TCAAAGCCCTAGTGAGCGAA 59.026 50.000 0.00 0.00 0.00 4.70
3138 3348 2.690497 TCCAGACCGATAGCTCTCAAAG 59.310 50.000 0.00 0.00 0.00 2.77
3152 3362 3.031736 TGACTACTAAGGCATCCAGACC 58.968 50.000 0.00 0.00 35.10 3.85
3249 3459 3.264845 AACCGGGACCAATGCCCT 61.265 61.111 6.32 0.00 43.72 5.19
3374 3584 2.438434 GGTGGCATGAACCGGGAG 60.438 66.667 6.32 0.00 0.00 4.30
3461 3674 3.834056 CCCTCTCCCCCTCGGCTA 61.834 72.222 0.00 0.00 0.00 3.93
3623 3837 2.203182 TGAAGACAGGGACGGGGT 59.797 61.111 0.00 0.00 0.00 4.95
3905 4122 1.250328 TCTATGTCACGTTGGTCGGT 58.750 50.000 0.00 0.00 44.69 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.