Multiple sequence alignment - TraesCS4A01G232900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G232900 chr4A 100.000 2417 0 0 1 2417 542041407 542038991 0.000000e+00 4464
1 TraesCS4A01G232900 chr4A 81.172 239 15 8 1514 1722 632660463 632660225 5.350000e-37 165
2 TraesCS4A01G232900 chr4B 94.784 1112 49 1 331 1433 81995410 81996521 0.000000e+00 1724
3 TraesCS4A01G232900 chr4B 92.332 313 21 2 1 310 81995043 81995355 2.210000e-120 442
4 TraesCS4A01G232900 chr4B 93.061 245 13 3 2176 2417 82003128 82003371 2.960000e-94 355
5 TraesCS4A01G232900 chr4B 85.915 213 18 6 1513 1714 82001959 82002170 1.460000e-52 217
6 TraesCS4A01G232900 chr4B 91.111 90 6 2 1430 1517 82001848 82001937 1.170000e-23 121
7 TraesCS4A01G232900 chr4B 88.298 94 2 1 2021 2105 82003030 82003123 1.180000e-18 104
8 TraesCS4A01G232900 chr4D 91.940 1129 59 6 310 1429 55043889 55044994 0.000000e+00 1552
9 TraesCS4A01G232900 chr4D 83.705 583 93 2 440 1021 55051087 55051668 1.260000e-152 549
10 TraesCS4A01G232900 chr4D 92.903 310 15 3 8 317 55043530 55043832 6.130000e-121 444
11 TraesCS4A01G232900 chr4D 86.310 168 21 2 2250 2417 55046448 55046613 5.310000e-42 182
12 TraesCS4A01G232900 chr4D 96.825 63 2 0 2254 2316 54896002 54896064 3.290000e-19 106
13 TraesCS4A01G232900 chr7D 84.685 222 21 7 1511 1719 482233814 482234035 2.430000e-50 209
14 TraesCS4A01G232900 chr3B 90.278 144 12 2 1870 2011 758432625 758432768 1.140000e-43 187
15 TraesCS4A01G232900 chr3B 86.029 136 17 2 1870 2003 758162052 758162187 6.960000e-31 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G232900 chr4A 542038991 542041407 2416 True 4464 4464 100.000000 1 2417 1 chr4A.!!$R1 2416
1 TraesCS4A01G232900 chr4B 81995043 81996521 1478 False 1083 1724 93.558000 1 1433 2 chr4B.!!$F1 1432
2 TraesCS4A01G232900 chr4D 55043530 55046613 3083 False 726 1552 90.384333 8 2417 3 chr4D.!!$F3 2409
3 TraesCS4A01G232900 chr4D 55051087 55051668 581 False 549 549 83.705000 440 1021 1 chr4D.!!$F2 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
110 111 1.369091 GGCTACGACATGGCAAGGTG 61.369 60.0 0.0 0.0 36.24 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1461 1585 0.031994 CCAAAGGCCGGTCACAAAAG 59.968 55.0 9.71 0.0 0.0 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 2.025155 GGATCTCAAGTCAGGCTACGA 58.975 52.381 0.00 0.00 0.00 3.43
110 111 1.369091 GGCTACGACATGGCAAGGTG 61.369 60.000 0.00 0.00 36.24 4.00
126 127 5.279156 GGCAAGGTGAACATTTTCTCTCATT 60.279 40.000 0.00 0.00 32.36 2.57
127 128 6.071952 GGCAAGGTGAACATTTTCTCTCATTA 60.072 38.462 0.00 0.00 32.36 1.90
128 129 6.803807 GCAAGGTGAACATTTTCTCTCATTAC 59.196 38.462 0.00 0.00 32.36 1.89
193 197 8.962884 TTTCATGATCCGAGAATCTGAATTTA 57.037 30.769 0.00 0.00 30.33 1.40
194 198 8.599055 TTCATGATCCGAGAATCTGAATTTAG 57.401 34.615 0.00 0.00 30.33 1.85
199 203 7.708322 TGATCCGAGAATCTGAATTTAGAACTG 59.292 37.037 3.79 3.39 30.33 3.16
238 242 6.271159 AGTTACCTGAGGAAGTCAAAGATCTT 59.729 38.462 4.99 0.88 33.60 2.40
316 385 6.642950 AGAATTTCGAGCTGGTAATAGAATCG 59.357 38.462 0.00 0.00 32.86 3.34
339 408 7.660059 TCGAAAATTAGTCAAGTACGATTTCG 58.340 34.615 9.72 9.72 46.33 3.46
748 817 4.741239 AGGAGGCCATGGTCCGGT 62.741 66.667 14.18 0.00 37.97 5.28
751 820 3.699134 GAGGCCATGGTCCGGTTCC 62.699 68.421 14.18 3.14 0.00 3.62
798 867 2.004583 CCGTTGCTAAACTGATCGGA 57.995 50.000 9.00 0.00 38.96 4.55
1058 1151 2.428530 TGATGGTCGAGAAGGACATGAG 59.571 50.000 0.00 0.00 38.70 2.90
1095 1188 3.057337 CCGGAGTTCCTGAACCGT 58.943 61.111 0.00 0.00 43.22 4.83
1130 1223 2.266055 GTTCCGGGAGCTCACCAG 59.734 66.667 17.19 5.06 0.00 4.00
1173 1266 0.107312 CCAAGATGCTGGAGGAGGTG 60.107 60.000 0.00 0.00 38.96 4.00
1231 1324 0.533032 GACGGAGAGGTTCAAGGAGG 59.467 60.000 0.00 0.00 0.00 4.30
1234 1327 1.645710 GGAGAGGTTCAAGGAGGTGA 58.354 55.000 0.00 0.00 0.00 4.02
1248 1341 2.190578 GTGATGGCCGAGGAAGGG 59.809 66.667 0.00 0.00 0.00 3.95
1314 1407 2.039405 GCTGCTGGAGGACAAGCTG 61.039 63.158 0.00 0.00 0.00 4.24
1375 1468 3.909430 TCGTTGACTGTAGATGTTGACC 58.091 45.455 0.00 0.00 0.00 4.02
1380 1473 1.825474 ACTGTAGATGTTGACCCCGAG 59.175 52.381 0.00 0.00 0.00 4.63
1461 1585 7.862372 TGCTATCAACAATTGTCAAAGTCTTTC 59.138 33.333 12.39 0.00 0.00 2.62
1465 1620 9.657419 ATCAACAATTGTCAAAGTCTTTCTTTT 57.343 25.926 12.39 0.00 42.95 2.27
1470 1625 8.375465 CAATTGTCAAAGTCTTTCTTTTGTGAC 58.625 33.333 0.00 0.00 42.95 3.67
1478 1633 1.770294 TTCTTTTGTGACCGGCCTTT 58.230 45.000 0.00 0.00 0.00 3.11
1483 1638 0.684805 TTGTGACCGGCCTTTGGTTT 60.685 50.000 0.00 0.00 40.63 3.27
1484 1639 0.684805 TGTGACCGGCCTTTGGTTTT 60.685 50.000 0.00 0.00 40.63 2.43
1488 1643 2.164338 GACCGGCCTTTGGTTTTATGA 58.836 47.619 0.00 0.00 40.63 2.15
1491 1646 2.539476 CGGCCTTTGGTTTTATGATGC 58.461 47.619 0.00 0.00 0.00 3.91
1492 1647 2.539476 GGCCTTTGGTTTTATGATGCG 58.461 47.619 0.00 0.00 0.00 4.73
1494 1649 2.738321 GCCTTTGGTTTTATGATGCGGG 60.738 50.000 0.00 0.00 0.00 6.13
1496 1651 2.516227 TTGGTTTTATGATGCGGGGA 57.484 45.000 0.00 0.00 0.00 4.81
1497 1652 2.746279 TGGTTTTATGATGCGGGGAT 57.254 45.000 0.00 0.00 0.00 3.85
1499 1654 1.000274 GGTTTTATGATGCGGGGATGC 60.000 52.381 0.00 0.00 0.00 3.91
1500 1655 1.000274 GTTTTATGATGCGGGGATGCC 60.000 52.381 0.00 0.00 0.00 4.40
1501 1656 0.478072 TTTATGATGCGGGGATGCCT 59.522 50.000 2.19 0.00 0.00 4.75
1502 1657 0.250858 TTATGATGCGGGGATGCCTG 60.251 55.000 7.93 7.93 0.00 4.85
1503 1658 1.418097 TATGATGCGGGGATGCCTGT 61.418 55.000 14.32 0.00 0.00 4.00
1504 1659 2.903855 GATGCGGGGATGCCTGTG 60.904 66.667 14.32 0.06 0.00 3.66
1505 1660 4.511246 ATGCGGGGATGCCTGTGG 62.511 66.667 14.32 0.00 0.00 4.17
1516 1671 1.815866 GCCTGTGGCTGTGTGTTTT 59.184 52.632 0.73 0.00 46.69 2.43
1517 1672 0.175531 GCCTGTGGCTGTGTGTTTTT 59.824 50.000 0.73 0.00 46.69 1.94
1572 1727 4.008074 CACAGACAGTGGGATACAAAGT 57.992 45.455 0.00 0.00 44.69 2.66
1573 1728 3.748048 CACAGACAGTGGGATACAAAGTG 59.252 47.826 0.00 0.00 44.69 3.16
1574 1729 3.244561 ACAGACAGTGGGATACAAAGTGG 60.245 47.826 0.00 0.00 39.74 4.00
1575 1730 2.305927 AGACAGTGGGATACAAAGTGGG 59.694 50.000 0.00 0.00 39.74 4.61
1576 1731 1.354368 ACAGTGGGATACAAAGTGGGG 59.646 52.381 0.00 0.00 39.74 4.96
1577 1732 0.999712 AGTGGGATACAAAGTGGGGG 59.000 55.000 0.00 0.00 39.74 5.40
1578 1733 0.683179 GTGGGATACAAAGTGGGGGC 60.683 60.000 0.00 0.00 39.74 5.80
1579 1734 1.076265 GGGATACAAAGTGGGGGCC 60.076 63.158 0.00 0.00 39.74 5.80
1580 1735 1.694856 GGATACAAAGTGGGGGCCA 59.305 57.895 4.39 0.00 0.00 5.36
1581 1736 0.040499 GGATACAAAGTGGGGGCCAA 59.960 55.000 4.39 0.00 34.18 4.52
1582 1737 1.474330 GATACAAAGTGGGGGCCAAG 58.526 55.000 4.39 0.00 34.18 3.61
1583 1738 0.614697 ATACAAAGTGGGGGCCAAGC 60.615 55.000 4.39 0.00 34.18 4.01
1599 1754 3.255032 GCCATACATGAGGCCCCT 58.745 61.111 14.75 0.00 45.18 4.79
1600 1755 2.463441 GCCATACATGAGGCCCCTA 58.537 57.895 14.75 0.00 45.18 3.53
1601 1756 0.771127 GCCATACATGAGGCCCCTAA 59.229 55.000 14.75 0.00 45.18 2.69
1602 1757 1.144913 GCCATACATGAGGCCCCTAAA 59.855 52.381 14.75 0.00 45.18 1.85
1603 1758 2.863809 CCATACATGAGGCCCCTAAAC 58.136 52.381 0.00 0.00 0.00 2.01
1604 1759 2.443255 CCATACATGAGGCCCCTAAACT 59.557 50.000 0.00 0.00 0.00 2.66
1605 1760 3.480470 CATACATGAGGCCCCTAAACTG 58.520 50.000 0.00 0.00 0.00 3.16
1606 1761 1.668826 ACATGAGGCCCCTAAACTGA 58.331 50.000 0.00 0.00 0.00 3.41
1607 1762 1.992557 ACATGAGGCCCCTAAACTGAA 59.007 47.619 0.00 0.00 0.00 3.02
1608 1763 2.025887 ACATGAGGCCCCTAAACTGAAG 60.026 50.000 0.00 0.00 0.00 3.02
1609 1764 1.742308 TGAGGCCCCTAAACTGAAGT 58.258 50.000 0.00 0.00 0.00 3.01
1610 1765 2.910544 TGAGGCCCCTAAACTGAAGTA 58.089 47.619 0.00 0.00 0.00 2.24
1611 1766 2.838202 TGAGGCCCCTAAACTGAAGTAG 59.162 50.000 0.00 0.00 0.00 2.57
1612 1767 2.838813 GAGGCCCCTAAACTGAAGTAGT 59.161 50.000 0.00 0.00 42.89 2.73
1613 1768 4.028825 GAGGCCCCTAAACTGAAGTAGTA 58.971 47.826 0.00 0.00 39.18 1.82
1614 1769 4.031611 AGGCCCCTAAACTGAAGTAGTAG 58.968 47.826 0.00 0.00 39.18 2.57
1615 1770 3.773667 GGCCCCTAAACTGAAGTAGTAGT 59.226 47.826 0.00 0.00 39.18 2.73
1616 1771 4.958581 GGCCCCTAAACTGAAGTAGTAGTA 59.041 45.833 0.00 0.00 39.18 1.82
1617 1772 5.423290 GGCCCCTAAACTGAAGTAGTAGTAA 59.577 44.000 0.00 0.00 39.18 2.24
1618 1773 6.070596 GGCCCCTAAACTGAAGTAGTAGTAAA 60.071 42.308 0.00 0.00 39.18 2.01
1619 1774 6.815641 GCCCCTAAACTGAAGTAGTAGTAAAC 59.184 42.308 0.00 0.00 39.18 2.01
1620 1775 7.310299 GCCCCTAAACTGAAGTAGTAGTAAACT 60.310 40.741 0.00 0.00 39.18 2.66
1621 1776 8.591940 CCCCTAAACTGAAGTAGTAGTAAACTT 58.408 37.037 0.00 0.00 39.18 2.66
1622 1777 9.993454 CCCTAAACTGAAGTAGTAGTAAACTTT 57.007 33.333 1.75 0.00 39.18 2.66
1625 1780 8.959705 AAACTGAAGTAGTAGTAAACTTTGCT 57.040 30.769 0.00 0.00 39.18 3.91
1636 1791 9.152595 AGTAGTAAACTTTGCTAAACTATGAGC 57.847 33.333 1.32 0.00 33.35 4.26
1637 1792 9.152595 GTAGTAAACTTTGCTAAACTATGAGCT 57.847 33.333 1.32 0.00 39.54 4.09
1638 1793 8.622948 AGTAAACTTTGCTAAACTATGAGCTT 57.377 30.769 0.00 0.00 39.54 3.74
1639 1794 8.722394 AGTAAACTTTGCTAAACTATGAGCTTC 58.278 33.333 0.00 0.00 39.54 3.86
1640 1795 5.786401 ACTTTGCTAAACTATGAGCTTCG 57.214 39.130 0.00 0.00 39.54 3.79
1641 1796 5.238583 ACTTTGCTAAACTATGAGCTTCGT 58.761 37.500 0.00 0.00 39.54 3.85
1642 1797 6.395629 ACTTTGCTAAACTATGAGCTTCGTA 58.604 36.000 0.00 0.00 39.54 3.43
1643 1798 6.872020 ACTTTGCTAAACTATGAGCTTCGTAA 59.128 34.615 0.00 0.00 39.54 3.18
1644 1799 7.549488 ACTTTGCTAAACTATGAGCTTCGTAAT 59.451 33.333 0.00 0.00 39.54 1.89
1645 1800 7.843490 TTGCTAAACTATGAGCTTCGTAATT 57.157 32.000 0.00 0.00 39.54 1.40
1646 1801 7.843490 TGCTAAACTATGAGCTTCGTAATTT 57.157 32.000 0.00 0.00 39.54 1.82
1647 1802 8.936070 TGCTAAACTATGAGCTTCGTAATTTA 57.064 30.769 0.00 0.00 39.54 1.40
1648 1803 9.542462 TGCTAAACTATGAGCTTCGTAATTTAT 57.458 29.630 0.00 0.00 39.54 1.40
1652 1807 9.542462 AAACTATGAGCTTCGTAATTTATAGCA 57.458 29.630 0.00 0.00 34.37 3.49
1653 1808 8.522178 ACTATGAGCTTCGTAATTTATAGCAC 57.478 34.615 0.00 0.00 34.37 4.40
1654 1809 5.883328 TGAGCTTCGTAATTTATAGCACG 57.117 39.130 0.00 0.00 34.37 5.34
1655 1810 5.345702 TGAGCTTCGTAATTTATAGCACGT 58.654 37.500 0.00 0.00 35.91 4.49
1656 1811 5.457799 TGAGCTTCGTAATTTATAGCACGTC 59.542 40.000 0.00 0.00 35.91 4.34
1657 1812 4.743644 AGCTTCGTAATTTATAGCACGTCC 59.256 41.667 0.00 0.00 35.91 4.79
1658 1813 4.743644 GCTTCGTAATTTATAGCACGTCCT 59.256 41.667 0.00 0.00 35.91 3.85
1659 1814 5.233689 GCTTCGTAATTTATAGCACGTCCTT 59.766 40.000 0.00 0.00 35.91 3.36
1660 1815 6.238022 GCTTCGTAATTTATAGCACGTCCTTT 60.238 38.462 0.00 0.00 35.91 3.11
1661 1816 7.043192 GCTTCGTAATTTATAGCACGTCCTTTA 60.043 37.037 0.00 0.00 35.91 1.85
1662 1817 8.700722 TTCGTAATTTATAGCACGTCCTTTAA 57.299 30.769 0.00 0.00 35.91 1.52
1663 1818 8.700722 TCGTAATTTATAGCACGTCCTTTAAA 57.299 30.769 4.87 4.87 35.91 1.52
1664 1819 9.149225 TCGTAATTTATAGCACGTCCTTTAAAA 57.851 29.630 6.28 0.00 35.91 1.52
1665 1820 9.757859 CGTAATTTATAGCACGTCCTTTAAAAA 57.242 29.630 6.28 0.00 0.00 1.94
1670 1825 8.556213 TTATAGCACGTCCTTTAAAAATGAGT 57.444 30.769 0.00 0.00 0.00 3.41
1671 1826 5.767816 AGCACGTCCTTTAAAAATGAGTT 57.232 34.783 0.00 0.00 0.00 3.01
1672 1827 6.870971 AGCACGTCCTTTAAAAATGAGTTA 57.129 33.333 0.00 0.00 0.00 2.24
1673 1828 6.665465 AGCACGTCCTTTAAAAATGAGTTAC 58.335 36.000 0.00 0.00 0.00 2.50
1674 1829 6.261381 AGCACGTCCTTTAAAAATGAGTTACA 59.739 34.615 0.00 0.00 0.00 2.41
1675 1830 6.913673 GCACGTCCTTTAAAAATGAGTTACAA 59.086 34.615 0.00 0.00 0.00 2.41
1676 1831 7.112984 GCACGTCCTTTAAAAATGAGTTACAAG 59.887 37.037 0.00 0.00 0.00 3.16
1677 1832 8.339714 CACGTCCTTTAAAAATGAGTTACAAGA 58.660 33.333 0.00 0.00 0.00 3.02
1678 1833 8.895737 ACGTCCTTTAAAAATGAGTTACAAGAA 58.104 29.630 0.00 0.00 0.00 2.52
1679 1834 9.724839 CGTCCTTTAAAAATGAGTTACAAGAAA 57.275 29.630 0.00 0.00 0.00 2.52
1708 1863 9.770097 AAATTGATCTAGATCTGATTTCGCTTA 57.230 29.630 28.51 5.72 38.60 3.09
1713 1868 9.585099 GATCTAGATCTGATTTCGCTTATGATT 57.415 33.333 23.06 0.00 35.04 2.57
1714 1869 8.754230 TCTAGATCTGATTTCGCTTATGATTG 57.246 34.615 5.18 0.00 0.00 2.67
1715 1870 6.238610 AGATCTGATTTCGCTTATGATTGC 57.761 37.500 0.00 0.00 0.00 3.56
1746 1901 3.502123 TGGGAAGATCCGAACAAGTTT 57.498 42.857 0.00 0.00 37.43 2.66
1747 1902 3.827722 TGGGAAGATCCGAACAAGTTTT 58.172 40.909 0.00 0.00 37.43 2.43
1768 1923 4.398549 TTTTTCTTAAGATGGACGTGCG 57.601 40.909 5.89 0.00 0.00 5.34
1769 1924 3.306917 TTTCTTAAGATGGACGTGCGA 57.693 42.857 5.89 0.00 0.00 5.10
1770 1925 3.520290 TTCTTAAGATGGACGTGCGAT 57.480 42.857 5.89 0.00 0.00 4.58
1771 1926 2.809446 TCTTAAGATGGACGTGCGATG 58.191 47.619 0.00 0.00 0.00 3.84
1772 1927 1.860950 CTTAAGATGGACGTGCGATGG 59.139 52.381 1.60 0.00 0.00 3.51
1773 1928 1.107945 TAAGATGGACGTGCGATGGA 58.892 50.000 1.60 0.00 0.00 3.41
1774 1929 0.460284 AAGATGGACGTGCGATGGAC 60.460 55.000 1.60 0.00 0.00 4.02
1775 1930 2.202743 ATGGACGTGCGATGGACG 60.203 61.111 9.30 9.30 45.66 4.79
1781 1936 2.885644 GTGCGATGGACGTGCGAT 60.886 61.111 1.60 0.00 44.60 4.58
1782 1937 2.885164 TGCGATGGACGTGCGATG 60.885 61.111 1.60 0.00 44.60 3.84
1783 1938 3.630148 GCGATGGACGTGCGATGG 61.630 66.667 1.60 0.22 44.60 3.51
1785 1940 1.300156 CGATGGACGTGCGATGGAT 60.300 57.895 1.60 0.00 37.22 3.41
1786 1941 1.551503 CGATGGACGTGCGATGGATG 61.552 60.000 1.60 0.00 37.22 3.51
1787 1942 1.835483 GATGGACGTGCGATGGATGC 61.835 60.000 1.60 0.00 0.00 3.91
1801 2252 0.466124 GGATGCTACCGCCTCTCTTT 59.534 55.000 0.00 0.00 32.23 2.52
1827 2296 1.540607 GACGTGCGATGGATGCTACG 61.541 60.000 0.00 0.00 40.29 3.51
1830 2299 2.354656 GCGATGGATGCTACGCGA 60.355 61.111 15.93 0.00 41.49 5.87
1832 2301 1.949015 GCGATGGATGCTACGCGATG 61.949 60.000 15.93 5.84 41.49 3.84
1834 2303 1.063806 GATGGATGCTACGCGATGAC 58.936 55.000 15.93 0.00 0.00 3.06
1835 2304 0.389025 ATGGATGCTACGCGATGACA 59.611 50.000 15.93 5.63 0.00 3.58
1836 2305 0.174617 TGGATGCTACGCGATGACAA 59.825 50.000 15.93 0.00 0.00 3.18
1837 2306 1.202521 TGGATGCTACGCGATGACAAT 60.203 47.619 15.93 0.00 0.00 2.71
1840 2309 4.082463 TGGATGCTACGCGATGACAATATA 60.082 41.667 15.93 0.00 0.00 0.86
1841 2310 4.862574 GGATGCTACGCGATGACAATATAA 59.137 41.667 15.93 0.00 0.00 0.98
1842 2311 5.004821 GGATGCTACGCGATGACAATATAAG 59.995 44.000 15.93 0.00 0.00 1.73
1843 2312 4.866921 TGCTACGCGATGACAATATAAGT 58.133 39.130 15.93 0.00 0.00 2.24
1844 2313 4.679654 TGCTACGCGATGACAATATAAGTG 59.320 41.667 15.93 0.00 0.00 3.16
1845 2314 4.915667 GCTACGCGATGACAATATAAGTGA 59.084 41.667 15.93 0.00 0.00 3.41
1846 2315 5.401376 GCTACGCGATGACAATATAAGTGAA 59.599 40.000 15.93 0.00 0.00 3.18
1847 2316 5.637104 ACGCGATGACAATATAAGTGAAC 57.363 39.130 15.93 0.00 0.00 3.18
1848 2317 5.348986 ACGCGATGACAATATAAGTGAACT 58.651 37.500 15.93 0.00 0.00 3.01
1849 2318 5.810587 ACGCGATGACAATATAAGTGAACTT 59.189 36.000 15.93 0.71 39.85 2.66
1851 2320 6.422223 GCGATGACAATATAAGTGAACTTGG 58.578 40.000 5.95 0.00 37.40 3.61
1852 2321 6.422223 CGATGACAATATAAGTGAACTTGGC 58.578 40.000 5.95 0.00 37.40 4.52
1853 2322 6.511767 CGATGACAATATAAGTGAACTTGGCC 60.512 42.308 5.95 0.00 37.40 5.36
1854 2323 5.565509 TGACAATATAAGTGAACTTGGCCA 58.434 37.500 0.00 0.00 37.40 5.36
1855 2324 5.647658 TGACAATATAAGTGAACTTGGCCAG 59.352 40.000 5.11 2.72 37.40 4.85
1856 2325 5.570320 ACAATATAAGTGAACTTGGCCAGT 58.430 37.500 5.11 3.46 37.40 4.00
1857 2326 5.415701 ACAATATAAGTGAACTTGGCCAGTG 59.584 40.000 5.11 5.84 35.12 3.66
1859 2328 4.634012 ATAAGTGAACTTGGCCAGTGTA 57.366 40.909 5.11 0.00 35.12 2.90
1860 2329 3.290948 AAGTGAACTTGGCCAGTGTAA 57.709 42.857 5.11 0.00 35.12 2.41
1861 2330 2.572290 AGTGAACTTGGCCAGTGTAAC 58.428 47.619 5.11 11.23 35.12 2.50
1862 2331 2.092646 AGTGAACTTGGCCAGTGTAACA 60.093 45.455 5.11 10.41 41.43 2.41
1863 2332 2.032924 GTGAACTTGGCCAGTGTAACAC 59.967 50.000 21.73 21.73 41.43 3.32
1864 2333 1.263217 GAACTTGGCCAGTGTAACACG 59.737 52.381 5.11 0.00 41.43 4.49
1865 2334 0.179468 ACTTGGCCAGTGTAACACGT 59.821 50.000 5.11 0.00 41.43 4.49
1867 2336 2.066262 CTTGGCCAGTGTAACACGTAG 58.934 52.381 5.11 0.00 41.43 3.51
1868 2337 0.319083 TGGCCAGTGTAACACGTAGG 59.681 55.000 0.00 0.00 41.43 3.18
1869 2338 1.017701 GGCCAGTGTAACACGTAGGC 61.018 60.000 0.00 3.22 44.43 3.93
1870 2339 0.320073 GCCAGTGTAACACGTAGGCA 60.320 55.000 15.99 0.00 44.49 4.75
1871 2340 1.874739 GCCAGTGTAACACGTAGGCAA 60.875 52.381 15.99 0.00 44.49 4.52
1872 2341 2.485903 CCAGTGTAACACGTAGGCAAA 58.514 47.619 0.00 0.00 41.43 3.68
1873 2342 2.873472 CCAGTGTAACACGTAGGCAAAA 59.127 45.455 0.00 0.00 41.43 2.44
1876 2345 2.613133 GTGTAACACGTAGGCAAAACCA 59.387 45.455 0.00 0.00 37.69 3.67
1877 2346 3.251487 GTGTAACACGTAGGCAAAACCAT 59.749 43.478 0.00 0.00 37.69 3.55
1879 2348 1.530323 ACACGTAGGCAAAACCATCC 58.470 50.000 0.00 0.00 43.14 3.51
1880 2349 1.073284 ACACGTAGGCAAAACCATCCT 59.927 47.619 0.00 0.00 43.14 3.24
1882 2351 1.349688 ACGTAGGCAAAACCATCCTCA 59.650 47.619 0.00 0.00 43.14 3.86
1883 2352 2.224670 ACGTAGGCAAAACCATCCTCAA 60.225 45.455 0.00 0.00 43.14 3.02
1884 2353 2.817258 CGTAGGCAAAACCATCCTCAAA 59.183 45.455 0.00 0.00 43.14 2.69
1885 2354 3.254657 CGTAGGCAAAACCATCCTCAAAA 59.745 43.478 0.00 0.00 43.14 2.44
1886 2355 3.751479 AGGCAAAACCATCCTCAAAAC 57.249 42.857 0.00 0.00 43.14 2.43
1887 2356 2.368548 AGGCAAAACCATCCTCAAAACC 59.631 45.455 0.00 0.00 43.14 3.27
1888 2357 2.103941 GGCAAAACCATCCTCAAAACCA 59.896 45.455 0.00 0.00 38.86 3.67
1889 2358 3.130633 GCAAAACCATCCTCAAAACCAC 58.869 45.455 0.00 0.00 0.00 4.16
1892 2361 1.995376 ACCATCCTCAAAACCACCAC 58.005 50.000 0.00 0.00 0.00 4.16
1895 2364 1.806542 CATCCTCAAAACCACCACGAG 59.193 52.381 0.00 0.00 0.00 4.18
1897 2366 1.070134 TCCTCAAAACCACCACGAGAG 59.930 52.381 0.00 0.00 0.00 3.20
1899 2368 0.534203 TCAAAACCACCACGAGAGCC 60.534 55.000 0.00 0.00 0.00 4.70
1901 2370 0.182775 AAAACCACCACGAGAGCCTT 59.817 50.000 0.00 0.00 0.00 4.35
1902 2371 1.053424 AAACCACCACGAGAGCCTTA 58.947 50.000 0.00 0.00 0.00 2.69
1904 2373 1.258445 ACCACCACGAGAGCCTTAGG 61.258 60.000 0.00 0.00 0.00 2.69
1905 2374 1.517832 CACCACGAGAGCCTTAGGG 59.482 63.158 0.00 0.00 0.00 3.53
1906 2375 1.686110 ACCACGAGAGCCTTAGGGG 60.686 63.158 0.00 0.00 38.36 4.79
1907 2376 2.435693 CCACGAGAGCCTTAGGGGG 61.436 68.421 0.00 0.00 35.12 5.40
1915 2384 1.382914 AGCCTTAGGGGGTGATTTGT 58.617 50.000 0.00 0.00 45.16 2.83
1916 2385 1.285078 AGCCTTAGGGGGTGATTTGTC 59.715 52.381 0.00 0.00 45.16 3.18
1922 2391 1.503347 AGGGGGTGATTTGTCTGGTTT 59.497 47.619 0.00 0.00 0.00 3.27
1924 2393 2.037121 GGGGGTGATTTGTCTGGTTTTG 59.963 50.000 0.00 0.00 0.00 2.44
1925 2394 2.037121 GGGGTGATTTGTCTGGTTTTGG 59.963 50.000 0.00 0.00 0.00 3.28
1927 2396 3.386402 GGGTGATTTGTCTGGTTTTGGAA 59.614 43.478 0.00 0.00 0.00 3.53
1928 2397 4.141824 GGGTGATTTGTCTGGTTTTGGAAA 60.142 41.667 0.00 0.00 0.00 3.13
1929 2398 5.049828 GGTGATTTGTCTGGTTTTGGAAAG 58.950 41.667 0.00 0.00 0.00 2.62
1930 2399 5.395214 GGTGATTTGTCTGGTTTTGGAAAGT 60.395 40.000 0.00 0.00 0.00 2.66
1931 2400 6.106003 GTGATTTGTCTGGTTTTGGAAAGTT 58.894 36.000 0.00 0.00 0.00 2.66
1932 2401 6.035975 GTGATTTGTCTGGTTTTGGAAAGTTG 59.964 38.462 0.00 0.00 0.00 3.16
1933 2402 5.730296 TTTGTCTGGTTTTGGAAAGTTGA 57.270 34.783 0.00 0.00 0.00 3.18
1934 2403 4.981806 TGTCTGGTTTTGGAAAGTTGAG 57.018 40.909 0.00 0.00 0.00 3.02
1935 2404 4.594970 TGTCTGGTTTTGGAAAGTTGAGA 58.405 39.130 0.00 0.00 0.00 3.27
1936 2405 4.640201 TGTCTGGTTTTGGAAAGTTGAGAG 59.360 41.667 0.00 0.00 0.00 3.20
1937 2406 4.036852 GTCTGGTTTTGGAAAGTTGAGAGG 59.963 45.833 0.00 0.00 0.00 3.69
1938 2407 4.080015 TCTGGTTTTGGAAAGTTGAGAGGA 60.080 41.667 0.00 0.00 0.00 3.71
1939 2408 4.803452 TGGTTTTGGAAAGTTGAGAGGAT 58.197 39.130 0.00 0.00 0.00 3.24
1940 2409 4.584325 TGGTTTTGGAAAGTTGAGAGGATG 59.416 41.667 0.00 0.00 0.00 3.51
1941 2410 4.827284 GGTTTTGGAAAGTTGAGAGGATGA 59.173 41.667 0.00 0.00 0.00 2.92
1942 2411 5.301805 GGTTTTGGAAAGTTGAGAGGATGAA 59.698 40.000 0.00 0.00 0.00 2.57
1943 2412 6.442112 GTTTTGGAAAGTTGAGAGGATGAAG 58.558 40.000 0.00 0.00 0.00 3.02
1944 2413 5.567037 TTGGAAAGTTGAGAGGATGAAGA 57.433 39.130 0.00 0.00 0.00 2.87
1945 2414 5.768980 TGGAAAGTTGAGAGGATGAAGAT 57.231 39.130 0.00 0.00 0.00 2.40
1946 2415 5.738909 TGGAAAGTTGAGAGGATGAAGATC 58.261 41.667 0.00 0.00 0.00 2.75
1957 2426 4.417426 GGATGAAGATCCCGGTTTTAGA 57.583 45.455 0.00 0.00 42.42 2.10
1958 2427 4.381411 GGATGAAGATCCCGGTTTTAGAG 58.619 47.826 0.00 0.00 42.42 2.43
1959 2428 3.906720 TGAAGATCCCGGTTTTAGAGG 57.093 47.619 0.00 0.00 0.00 3.69
1960 2429 3.178865 TGAAGATCCCGGTTTTAGAGGT 58.821 45.455 0.00 0.00 0.00 3.85
1961 2430 3.197116 TGAAGATCCCGGTTTTAGAGGTC 59.803 47.826 0.00 0.00 0.00 3.85
1962 2431 2.829023 AGATCCCGGTTTTAGAGGTCA 58.171 47.619 0.00 0.00 0.00 4.02
1963 2432 2.766828 AGATCCCGGTTTTAGAGGTCAG 59.233 50.000 0.00 0.00 0.00 3.51
1964 2433 1.272807 TCCCGGTTTTAGAGGTCAGG 58.727 55.000 0.00 0.00 0.00 3.86
1965 2434 0.252197 CCCGGTTTTAGAGGTCAGGG 59.748 60.000 0.00 0.00 0.00 4.45
1966 2435 0.252197 CCGGTTTTAGAGGTCAGGGG 59.748 60.000 0.00 0.00 0.00 4.79
1967 2436 0.252197 CGGTTTTAGAGGTCAGGGGG 59.748 60.000 0.00 0.00 0.00 5.40
1968 2437 1.369403 GGTTTTAGAGGTCAGGGGGT 58.631 55.000 0.00 0.00 0.00 4.95
1969 2438 1.709115 GGTTTTAGAGGTCAGGGGGTT 59.291 52.381 0.00 0.00 0.00 4.11
1970 2439 2.914941 GGTTTTAGAGGTCAGGGGGTTA 59.085 50.000 0.00 0.00 0.00 2.85
1971 2440 3.526430 GGTTTTAGAGGTCAGGGGGTTAT 59.474 47.826 0.00 0.00 0.00 1.89
1972 2441 4.524053 GTTTTAGAGGTCAGGGGGTTATG 58.476 47.826 0.00 0.00 0.00 1.90
1973 2442 3.502051 TTAGAGGTCAGGGGGTTATGT 57.498 47.619 0.00 0.00 0.00 2.29
1974 2443 1.584724 AGAGGTCAGGGGGTTATGTG 58.415 55.000 0.00 0.00 0.00 3.21
1975 2444 0.546598 GAGGTCAGGGGGTTATGTGG 59.453 60.000 0.00 0.00 0.00 4.17
1976 2445 1.076995 GGTCAGGGGGTTATGTGGC 60.077 63.158 0.00 0.00 0.00 5.01
1977 2446 1.076995 GTCAGGGGGTTATGTGGCC 60.077 63.158 0.00 0.00 0.00 5.36
1978 2447 1.542628 TCAGGGGGTTATGTGGCCA 60.543 57.895 0.00 0.00 0.00 5.36
1979 2448 1.143329 TCAGGGGGTTATGTGGCCAA 61.143 55.000 7.24 0.00 0.00 4.52
1980 2449 0.252012 CAGGGGGTTATGTGGCCAAA 60.252 55.000 7.24 0.15 0.00 3.28
1981 2450 0.489567 AGGGGGTTATGTGGCCAAAA 59.510 50.000 7.24 0.00 0.00 2.44
1982 2451 0.611200 GGGGGTTATGTGGCCAAAAC 59.389 55.000 7.24 12.72 0.00 2.43
1983 2452 0.245266 GGGGTTATGTGGCCAAAACG 59.755 55.000 7.24 0.00 0.00 3.60
1984 2453 0.963225 GGGTTATGTGGCCAAAACGT 59.037 50.000 7.24 0.00 0.00 3.99
1985 2454 1.336424 GGGTTATGTGGCCAAAACGTG 60.336 52.381 7.24 0.00 0.00 4.49
1986 2455 1.609555 GGTTATGTGGCCAAAACGTGA 59.390 47.619 7.24 0.00 0.00 4.35
1987 2456 2.230266 GGTTATGTGGCCAAAACGTGAT 59.770 45.455 7.24 0.00 0.00 3.06
1988 2457 3.440872 GGTTATGTGGCCAAAACGTGATA 59.559 43.478 7.24 0.00 0.00 2.15
1989 2458 4.408694 GTTATGTGGCCAAAACGTGATAC 58.591 43.478 7.24 0.00 0.00 2.24
1990 2459 2.264005 TGTGGCCAAAACGTGATACT 57.736 45.000 7.24 0.00 0.00 2.12
1991 2460 2.577700 TGTGGCCAAAACGTGATACTT 58.422 42.857 7.24 0.00 0.00 2.24
1992 2461 2.550606 TGTGGCCAAAACGTGATACTTC 59.449 45.455 7.24 0.00 0.00 3.01
1993 2462 2.812011 GTGGCCAAAACGTGATACTTCT 59.188 45.455 7.24 0.00 0.00 2.85
1994 2463 2.811431 TGGCCAAAACGTGATACTTCTG 59.189 45.455 0.61 0.00 0.00 3.02
1995 2464 2.161609 GGCCAAAACGTGATACTTCTGG 59.838 50.000 0.00 0.00 0.00 3.86
1996 2465 2.161609 GCCAAAACGTGATACTTCTGGG 59.838 50.000 0.00 0.00 0.00 4.45
1997 2466 2.747446 CCAAAACGTGATACTTCTGGGG 59.253 50.000 0.00 0.00 0.00 4.96
1998 2467 2.747446 CAAAACGTGATACTTCTGGGGG 59.253 50.000 0.00 0.00 0.00 5.40
1999 2468 1.652947 AACGTGATACTTCTGGGGGT 58.347 50.000 0.00 0.00 0.00 4.95
2000 2469 1.652947 ACGTGATACTTCTGGGGGTT 58.347 50.000 0.00 0.00 0.00 4.11
2001 2470 2.823959 ACGTGATACTTCTGGGGGTTA 58.176 47.619 0.00 0.00 0.00 2.85
2002 2471 3.381335 ACGTGATACTTCTGGGGGTTAT 58.619 45.455 0.00 0.00 0.00 1.89
2003 2472 4.549668 ACGTGATACTTCTGGGGGTTATA 58.450 43.478 0.00 0.00 0.00 0.98
2004 2473 5.152934 ACGTGATACTTCTGGGGGTTATAT 58.847 41.667 0.00 0.00 0.00 0.86
2005 2474 6.317312 ACGTGATACTTCTGGGGGTTATATA 58.683 40.000 0.00 0.00 0.00 0.86
2006 2475 6.210185 ACGTGATACTTCTGGGGGTTATATAC 59.790 42.308 0.00 0.00 0.00 1.47
2007 2476 6.209986 CGTGATACTTCTGGGGGTTATATACA 59.790 42.308 0.00 0.00 0.00 2.29
2008 2477 7.384477 GTGATACTTCTGGGGGTTATATACAC 58.616 42.308 0.00 0.00 0.00 2.90
2009 2478 7.234988 GTGATACTTCTGGGGGTTATATACACT 59.765 40.741 0.00 0.00 0.00 3.55
2010 2479 7.792736 TGATACTTCTGGGGGTTATATACACTT 59.207 37.037 0.00 0.00 0.00 3.16
2011 2480 6.496144 ACTTCTGGGGGTTATATACACTTC 57.504 41.667 0.00 0.00 0.00 3.01
2012 2481 6.210522 ACTTCTGGGGGTTATATACACTTCT 58.789 40.000 0.00 0.00 0.00 2.85
2013 2482 6.677076 ACTTCTGGGGGTTATATACACTTCTT 59.323 38.462 0.00 0.00 0.00 2.52
2014 2483 7.184022 ACTTCTGGGGGTTATATACACTTCTTT 59.816 37.037 0.00 0.00 0.00 2.52
2015 2484 7.133133 TCTGGGGGTTATATACACTTCTTTC 57.867 40.000 0.00 0.00 0.00 2.62
2016 2485 6.906901 TCTGGGGGTTATATACACTTCTTTCT 59.093 38.462 0.00 0.00 0.00 2.52
2017 2486 7.404980 TCTGGGGGTTATATACACTTCTTTCTT 59.595 37.037 0.00 0.00 0.00 2.52
2018 2487 7.935405 TGGGGGTTATATACACTTCTTTCTTT 58.065 34.615 0.00 0.00 0.00 2.52
2019 2488 7.832187 TGGGGGTTATATACACTTCTTTCTTTG 59.168 37.037 0.00 0.00 0.00 2.77
2020 2489 8.050930 GGGGGTTATATACACTTCTTTCTTTGA 58.949 37.037 0.00 0.00 0.00 2.69
2023 2492 9.937175 GGTTATATACACTTCTTTCTTTGATGC 57.063 33.333 0.00 0.00 0.00 3.91
2043 2512 0.465460 TGGACCTTGGCGATATTGGC 60.465 55.000 9.60 9.60 0.00 4.52
2046 2515 1.095228 ACCTTGGCGATATTGGCACG 61.095 55.000 18.40 16.14 44.88 5.34
2051 2520 1.641677 GCGATATTGGCACGACACC 59.358 57.895 0.00 0.00 0.00 4.16
2052 2521 1.924335 CGATATTGGCACGACACCG 59.076 57.895 0.00 0.00 42.50 4.94
2063 2532 2.970324 GACACCGTCTGCCGCAAA 60.970 61.111 0.00 0.00 34.38 3.68
2074 2552 3.243643 GTCTGCCGCAAAATGATTATTGC 59.756 43.478 12.09 12.09 46.45 3.56
2119 2598 1.225704 CCTCCTCATTGGTGCCTCC 59.774 63.158 0.00 0.00 37.07 4.30
2124 2603 0.907486 CTCATTGGTGCCTCCTCTCA 59.093 55.000 0.00 0.00 37.07 3.27
2137 2616 1.203313 TCCTCTCAGGTAGGTTTGGCT 60.203 52.381 0.00 0.00 36.53 4.75
2138 2617 1.630878 CCTCTCAGGTAGGTTTGGCTT 59.369 52.381 0.00 0.00 0.00 4.35
2139 2618 2.040412 CCTCTCAGGTAGGTTTGGCTTT 59.960 50.000 0.00 0.00 0.00 3.51
2140 2619 3.077359 CTCTCAGGTAGGTTTGGCTTTG 58.923 50.000 0.00 0.00 0.00 2.77
2141 2620 2.162681 CTCAGGTAGGTTTGGCTTTGG 58.837 52.381 0.00 0.00 0.00 3.28
2142 2621 0.603065 CAGGTAGGTTTGGCTTTGGC 59.397 55.000 0.00 0.00 37.82 4.52
2149 2628 0.321830 GTTTGGCTTTGGCATGGCAT 60.322 50.000 23.96 0.00 38.08 4.40
2161 2640 0.683828 CATGGCATGCTTGGGTGGTA 60.684 55.000 18.92 0.00 0.00 3.25
2162 2641 0.684153 ATGGCATGCTTGGGTGGTAC 60.684 55.000 18.92 0.00 0.00 3.34
2166 2645 2.978946 ATGCTTGGGTGGTACCGGG 61.979 63.158 6.32 0.00 39.83 5.73
2225 2704 1.770658 CTGATGGGCCTCAATCACCTA 59.229 52.381 4.53 0.00 0.00 3.08
2227 2706 3.584406 CTGATGGGCCTCAATCACCTATA 59.416 47.826 4.53 0.00 0.00 1.31
2257 2736 2.897350 GCCATCGGAAAGGCCTCG 60.897 66.667 5.23 5.70 45.18 4.63
2258 2737 2.203070 CCATCGGAAAGGCCTCGG 60.203 66.667 5.23 0.00 0.00 4.63
2259 2738 2.203070 CATCGGAAAGGCCTCGGG 60.203 66.667 5.23 0.00 0.00 5.14
2261 2740 2.732619 ATCGGAAAGGCCTCGGGTC 61.733 63.158 5.23 0.88 0.00 4.46
2262 2741 3.702048 CGGAAAGGCCTCGGGTCA 61.702 66.667 5.23 0.00 0.00 4.02
2264 2743 2.593956 GGAAAGGCCTCGGGTCACT 61.594 63.158 5.23 0.00 0.00 3.41
2303 3314 2.496871 TCACGATAAAGGACCGGCTTAA 59.503 45.455 0.00 0.00 0.00 1.85
2324 3335 5.484173 AACCAGCATACATTATCGTGTTG 57.516 39.130 0.00 0.00 33.62 3.33
2329 3340 6.321717 CAGCATACATTATCGTGTTGGTTTT 58.678 36.000 0.00 0.00 33.62 2.43
2330 3341 6.806249 CAGCATACATTATCGTGTTGGTTTTT 59.194 34.615 0.00 0.00 33.62 1.94
2338 3349 9.072294 CATTATCGTGTTGGTTTTTAGGAATTC 57.928 33.333 0.00 0.00 0.00 2.17
2353 3364 4.273318 AGGAATTCCTATTTGTGTGCTCC 58.727 43.478 25.99 0.00 46.48 4.70
2354 3365 3.065371 GGAATTCCTATTTGTGTGCTCCG 59.935 47.826 17.73 0.00 0.00 4.63
2357 3368 2.972625 TCCTATTTGTGTGCTCCGAAG 58.027 47.619 0.00 0.00 0.00 3.79
2393 3404 2.134346 ACGTTTGCATTTGTCATTGCC 58.866 42.857 5.98 0.00 38.08 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 6.991485 AACGATTACTGCAAACAAAAGATG 57.009 33.333 0.00 0.00 0.00 2.90
17 18 6.640907 GGAAACGATTACTGCAAACAAAAGAT 59.359 34.615 0.00 0.00 0.00 2.40
98 99 3.642848 AGAAAATGTTCACCTTGCCATGT 59.357 39.130 0.00 0.00 36.09 3.21
126 127 8.426489 GGTTTACACTTAGGTCCATCATATGTA 58.574 37.037 1.90 0.00 0.00 2.29
127 128 7.127339 AGGTTTACACTTAGGTCCATCATATGT 59.873 37.037 1.90 0.00 0.00 2.29
128 129 7.442364 CAGGTTTACACTTAGGTCCATCATATG 59.558 40.741 0.00 0.00 0.00 1.78
137 141 2.735134 CGTGCAGGTTTACACTTAGGTC 59.265 50.000 0.00 0.00 34.58 3.85
193 197 4.576216 CTGTCAGTGTCAGTACAGTTCT 57.424 45.455 8.98 0.00 37.15 3.01
215 219 6.688073 AAGATCTTTGACTTCCTCAGGTAA 57.312 37.500 0.88 0.00 0.00 2.85
238 242 1.674359 TTTCCTCACGCTTCTTGCAA 58.326 45.000 0.00 0.00 43.06 4.08
250 254 3.609853 CCTCCGTTTGATGATTTCCTCA 58.390 45.455 0.00 0.00 38.53 3.86
316 385 7.231607 TGCGAAATCGTACTTGACTAATTTTC 58.768 34.615 4.59 0.00 42.22 2.29
332 401 7.418521 GGAAATTTTAAACGAAATGCGAAATCG 59.581 33.333 0.00 0.00 44.57 3.34
372 441 2.622436 AGCTCTTTCGCCTGTAATCAC 58.378 47.619 0.00 0.00 0.00 3.06
395 464 3.824810 GCTCCAGCTCTTCCATGC 58.175 61.111 0.00 0.00 38.21 4.06
486 555 3.866582 CTCTCCACGGGGATGCCC 61.867 72.222 13.41 13.41 43.91 5.36
748 817 1.404181 GCTGTACTCGCTCATGTGGAA 60.404 52.381 0.00 0.00 0.00 3.53
751 820 0.179163 TCGCTGTACTCGCTCATGTG 60.179 55.000 0.00 0.00 0.00 3.21
777 846 1.075542 CGATCAGTTTAGCAACGGCA 58.924 50.000 0.00 0.00 44.61 5.69
780 849 1.324736 GCTCCGATCAGTTTAGCAACG 59.675 52.381 0.00 0.00 38.03 4.10
783 852 0.530744 ACGCTCCGATCAGTTTAGCA 59.469 50.000 0.00 0.00 32.69 3.49
786 855 0.458669 GGGACGCTCCGATCAGTTTA 59.541 55.000 0.00 0.00 37.43 2.01
789 858 3.148279 GGGGACGCTCCGATCAGT 61.148 66.667 0.00 0.00 37.43 3.41
1058 1151 2.046217 GGAACCCGTGCTTCTCCC 60.046 66.667 0.00 0.00 0.00 4.30
1130 1223 0.320050 GATCTCCTTCATCTCCGGCC 59.680 60.000 0.00 0.00 0.00 6.13
1179 1272 2.812619 CCCCTTCTCCCTCATCCGC 61.813 68.421 0.00 0.00 0.00 5.54
1231 1324 1.335132 TACCCTTCCTCGGCCATCAC 61.335 60.000 2.24 0.00 0.00 3.06
1234 1327 2.432300 CGTACCCTTCCTCGGCCAT 61.432 63.158 2.24 0.00 0.00 4.40
1248 1341 2.277756 CCGTAGCTGCGGTCGTAC 60.278 66.667 32.20 1.69 46.11 3.67
1314 1407 2.182842 GGCGAGCATCATGTCCACC 61.183 63.158 0.00 0.00 33.17 4.61
1375 1468 4.078516 GACCACGTTCCCCTCGGG 62.079 72.222 0.00 0.00 46.11 5.14
1453 1577 2.357952 GCCGGTCACAAAAGAAAGACTT 59.642 45.455 1.90 0.00 40.98 3.01
1454 1578 1.947456 GCCGGTCACAAAAGAAAGACT 59.053 47.619 1.90 0.00 0.00 3.24
1455 1579 1.001706 GGCCGGTCACAAAAGAAAGAC 60.002 52.381 0.00 0.00 0.00 3.01
1457 1581 1.318576 AGGCCGGTCACAAAAGAAAG 58.681 50.000 9.71 0.00 0.00 2.62
1461 1585 0.031994 CCAAAGGCCGGTCACAAAAG 59.968 55.000 9.71 0.00 0.00 2.27
1465 1620 0.684805 AAAACCAAAGGCCGGTCACA 60.685 50.000 9.71 0.00 34.99 3.58
1470 1625 2.738321 GCATCATAAAACCAAAGGCCGG 60.738 50.000 0.00 0.00 0.00 6.13
1478 1633 2.305928 CATCCCCGCATCATAAAACCA 58.694 47.619 0.00 0.00 0.00 3.67
1483 1638 0.250858 CAGGCATCCCCGCATCATAA 60.251 55.000 0.00 0.00 39.21 1.90
1484 1639 1.376086 CAGGCATCCCCGCATCATA 59.624 57.895 0.00 0.00 39.21 2.15
1488 1643 4.511246 CCACAGGCATCCCCGCAT 62.511 66.667 0.00 0.00 39.21 4.73
1551 1706 3.748048 CACTTTGTATCCCACTGTCTGTG 59.252 47.826 2.97 2.97 45.80 3.66
1552 1707 3.244561 CCACTTTGTATCCCACTGTCTGT 60.245 47.826 0.00 0.00 0.00 3.41
1553 1708 3.338249 CCACTTTGTATCCCACTGTCTG 58.662 50.000 0.00 0.00 0.00 3.51
1554 1709 2.305927 CCCACTTTGTATCCCACTGTCT 59.694 50.000 0.00 0.00 0.00 3.41
1555 1710 2.618045 CCCCACTTTGTATCCCACTGTC 60.618 54.545 0.00 0.00 0.00 3.51
1556 1711 1.354368 CCCCACTTTGTATCCCACTGT 59.646 52.381 0.00 0.00 0.00 3.55
1557 1712 1.340991 CCCCCACTTTGTATCCCACTG 60.341 57.143 0.00 0.00 0.00 3.66
1558 1713 0.999712 CCCCCACTTTGTATCCCACT 59.000 55.000 0.00 0.00 0.00 4.00
1559 1714 0.683179 GCCCCCACTTTGTATCCCAC 60.683 60.000 0.00 0.00 0.00 4.61
1560 1715 1.694856 GCCCCCACTTTGTATCCCA 59.305 57.895 0.00 0.00 0.00 4.37
1561 1716 1.076265 GGCCCCCACTTTGTATCCC 60.076 63.158 0.00 0.00 0.00 3.85
1562 1717 0.040499 TTGGCCCCCACTTTGTATCC 59.960 55.000 0.00 0.00 30.78 2.59
1563 1718 1.474330 CTTGGCCCCCACTTTGTATC 58.526 55.000 0.00 0.00 30.78 2.24
1564 1719 0.614697 GCTTGGCCCCCACTTTGTAT 60.615 55.000 0.00 0.00 30.78 2.29
1565 1720 1.228737 GCTTGGCCCCCACTTTGTA 60.229 57.895 0.00 0.00 30.78 2.41
1566 1721 2.524148 GCTTGGCCCCCACTTTGT 60.524 61.111 0.00 0.00 30.78 2.83
1567 1722 3.313524 GGCTTGGCCCCCACTTTG 61.314 66.667 0.00 0.00 44.06 2.77
1577 1732 2.036236 GCCTCATGTATGGCTTGGC 58.964 57.895 15.95 0.00 45.26 4.52
1583 1738 2.443255 AGTTTAGGGGCCTCATGTATGG 59.557 50.000 4.79 0.00 0.00 2.74
1584 1739 3.136443 TCAGTTTAGGGGCCTCATGTATG 59.864 47.826 4.79 0.00 0.00 2.39
1585 1740 3.393687 TCAGTTTAGGGGCCTCATGTAT 58.606 45.455 4.79 0.00 0.00 2.29
1586 1741 2.840511 TCAGTTTAGGGGCCTCATGTA 58.159 47.619 4.79 0.00 0.00 2.29
1587 1742 1.668826 TCAGTTTAGGGGCCTCATGT 58.331 50.000 4.79 0.00 0.00 3.21
1588 1743 2.025887 ACTTCAGTTTAGGGGCCTCATG 60.026 50.000 4.79 0.00 0.00 3.07
1589 1744 2.279173 ACTTCAGTTTAGGGGCCTCAT 58.721 47.619 4.79 0.00 0.00 2.90
1590 1745 1.742308 ACTTCAGTTTAGGGGCCTCA 58.258 50.000 4.79 0.00 0.00 3.86
1591 1746 2.838813 ACTACTTCAGTTTAGGGGCCTC 59.161 50.000 0.84 0.00 31.59 4.70
1592 1747 2.917205 ACTACTTCAGTTTAGGGGCCT 58.083 47.619 0.84 0.00 31.59 5.19
1593 1748 3.773667 ACTACTACTTCAGTTTAGGGGCC 59.226 47.826 0.00 0.00 38.80 5.80
1594 1749 6.535963 TTACTACTACTTCAGTTTAGGGGC 57.464 41.667 0.00 0.00 38.80 5.80
1595 1750 8.131847 AGTTTACTACTACTTCAGTTTAGGGG 57.868 38.462 0.00 0.00 38.80 4.79
1596 1751 9.993454 AAAGTTTACTACTACTTCAGTTTAGGG 57.007 33.333 0.00 0.00 38.80 3.53
1600 1755 8.959705 AGCAAAGTTTACTACTACTTCAGTTT 57.040 30.769 0.00 0.00 38.80 2.66
1610 1765 9.152595 GCTCATAGTTTAGCAAAGTTTACTACT 57.847 33.333 0.00 0.00 38.63 2.57
1611 1766 9.152595 AGCTCATAGTTTAGCAAAGTTTACTAC 57.847 33.333 0.00 0.00 41.32 2.73
1612 1767 9.720769 AAGCTCATAGTTTAGCAAAGTTTACTA 57.279 29.630 0.00 0.00 41.32 1.82
1613 1768 8.622948 AAGCTCATAGTTTAGCAAAGTTTACT 57.377 30.769 0.00 0.00 41.32 2.24
1614 1769 7.688578 CGAAGCTCATAGTTTAGCAAAGTTTAC 59.311 37.037 0.00 0.00 41.32 2.01
1615 1770 7.386848 ACGAAGCTCATAGTTTAGCAAAGTTTA 59.613 33.333 0.00 0.00 41.32 2.01
1616 1771 6.204882 ACGAAGCTCATAGTTTAGCAAAGTTT 59.795 34.615 0.00 0.00 41.32 2.66
1617 1772 5.701290 ACGAAGCTCATAGTTTAGCAAAGTT 59.299 36.000 0.00 0.00 41.32 2.66
1618 1773 5.238583 ACGAAGCTCATAGTTTAGCAAAGT 58.761 37.500 0.00 0.00 41.32 2.66
1619 1774 5.786401 ACGAAGCTCATAGTTTAGCAAAG 57.214 39.130 0.00 0.00 41.32 2.77
1620 1775 7.843490 ATTACGAAGCTCATAGTTTAGCAAA 57.157 32.000 0.00 0.00 41.32 3.68
1621 1776 7.843490 AATTACGAAGCTCATAGTTTAGCAA 57.157 32.000 0.00 0.00 41.32 3.91
1622 1777 7.843490 AAATTACGAAGCTCATAGTTTAGCA 57.157 32.000 0.00 0.00 41.32 3.49
1626 1781 9.542462 TGCTATAAATTACGAAGCTCATAGTTT 57.458 29.630 0.00 0.00 34.28 2.66
1627 1782 8.979574 GTGCTATAAATTACGAAGCTCATAGTT 58.020 33.333 0.00 0.00 34.28 2.24
1628 1783 7.326305 CGTGCTATAAATTACGAAGCTCATAGT 59.674 37.037 0.00 0.00 38.72 2.12
1629 1784 7.326305 ACGTGCTATAAATTACGAAGCTCATAG 59.674 37.037 3.36 0.00 39.61 2.23
1630 1785 7.143340 ACGTGCTATAAATTACGAAGCTCATA 58.857 34.615 3.36 0.00 39.61 2.15
1631 1786 5.983720 ACGTGCTATAAATTACGAAGCTCAT 59.016 36.000 3.36 0.00 39.61 2.90
1632 1787 5.345702 ACGTGCTATAAATTACGAAGCTCA 58.654 37.500 3.36 0.00 39.61 4.26
1633 1788 5.107951 GGACGTGCTATAAATTACGAAGCTC 60.108 44.000 0.00 0.11 39.61 4.09
1634 1789 4.743644 GGACGTGCTATAAATTACGAAGCT 59.256 41.667 0.00 0.00 39.61 3.74
1635 1790 4.743644 AGGACGTGCTATAAATTACGAAGC 59.256 41.667 8.23 0.02 39.61 3.86
1636 1791 6.823678 AAGGACGTGCTATAAATTACGAAG 57.176 37.500 10.98 0.00 39.61 3.79
1637 1792 8.700722 TTAAAGGACGTGCTATAAATTACGAA 57.299 30.769 10.98 0.00 39.61 3.85
1638 1793 8.700722 TTTAAAGGACGTGCTATAAATTACGA 57.299 30.769 10.98 0.00 39.61 3.43
1639 1794 9.757859 TTTTTAAAGGACGTGCTATAAATTACG 57.242 29.630 10.98 0.00 41.86 3.18
1644 1799 9.005777 ACTCATTTTTAAAGGACGTGCTATAAA 57.994 29.630 10.98 8.41 0.00 1.40
1645 1800 8.556213 ACTCATTTTTAAAGGACGTGCTATAA 57.444 30.769 10.98 2.06 0.00 0.98
1646 1801 8.556213 AACTCATTTTTAAAGGACGTGCTATA 57.444 30.769 10.98 0.00 0.00 1.31
1647 1802 7.448748 AACTCATTTTTAAAGGACGTGCTAT 57.551 32.000 10.98 0.00 0.00 2.97
1648 1803 6.870971 AACTCATTTTTAAAGGACGTGCTA 57.129 33.333 10.98 0.00 0.00 3.49
1649 1804 5.767816 AACTCATTTTTAAAGGACGTGCT 57.232 34.783 2.68 2.68 0.00 4.40
1650 1805 6.432107 TGTAACTCATTTTTAAAGGACGTGC 58.568 36.000 0.00 0.00 0.00 5.34
1651 1806 8.339714 TCTTGTAACTCATTTTTAAAGGACGTG 58.660 33.333 0.00 0.00 0.00 4.49
1652 1807 8.441312 TCTTGTAACTCATTTTTAAAGGACGT 57.559 30.769 0.00 0.00 0.00 4.34
1653 1808 9.724839 TTTCTTGTAACTCATTTTTAAAGGACG 57.275 29.630 0.00 0.00 0.00 4.79
1680 1835 9.118300 AGCGAAATCAGATCTAGATCAATTTTT 57.882 29.630 28.60 22.85 40.22 1.94
1681 1836 8.674263 AGCGAAATCAGATCTAGATCAATTTT 57.326 30.769 28.60 24.01 40.22 1.82
1682 1837 8.674263 AAGCGAAATCAGATCTAGATCAATTT 57.326 30.769 28.48 28.48 40.22 1.82
1683 1838 9.941325 ATAAGCGAAATCAGATCTAGATCAATT 57.059 29.630 29.83 24.22 40.22 2.32
1684 1839 9.368674 CATAAGCGAAATCAGATCTAGATCAAT 57.631 33.333 29.83 20.68 40.22 2.57
1685 1840 8.579863 TCATAAGCGAAATCAGATCTAGATCAA 58.420 33.333 29.83 19.53 40.22 2.57
1686 1841 8.115490 TCATAAGCGAAATCAGATCTAGATCA 57.885 34.615 29.83 14.23 40.22 2.92
1687 1842 9.585099 AATCATAAGCGAAATCAGATCTAGATC 57.415 33.333 22.92 22.92 38.09 2.75
1688 1843 9.368674 CAATCATAAGCGAAATCAGATCTAGAT 57.631 33.333 4.47 4.47 0.00 1.98
1689 1844 7.330454 GCAATCATAAGCGAAATCAGATCTAGA 59.670 37.037 0.00 0.00 0.00 2.43
1690 1845 7.331440 AGCAATCATAAGCGAAATCAGATCTAG 59.669 37.037 0.00 0.00 35.48 2.43
1691 1846 7.157347 AGCAATCATAAGCGAAATCAGATCTA 58.843 34.615 0.00 0.00 35.48 1.98
1692 1847 5.996513 AGCAATCATAAGCGAAATCAGATCT 59.003 36.000 0.00 0.00 35.48 2.75
1693 1848 6.238610 AGCAATCATAAGCGAAATCAGATC 57.761 37.500 0.00 0.00 35.48 2.75
1694 1849 5.180868 GGAGCAATCATAAGCGAAATCAGAT 59.819 40.000 0.00 0.00 35.48 2.90
1695 1850 4.512944 GGAGCAATCATAAGCGAAATCAGA 59.487 41.667 0.00 0.00 35.48 3.27
1696 1851 4.274214 TGGAGCAATCATAAGCGAAATCAG 59.726 41.667 0.00 0.00 35.48 2.90
1697 1852 4.198530 TGGAGCAATCATAAGCGAAATCA 58.801 39.130 0.00 0.00 35.48 2.57
1698 1853 4.818534 TGGAGCAATCATAAGCGAAATC 57.181 40.909 0.00 0.00 35.48 2.17
1699 1854 6.000219 ACTATGGAGCAATCATAAGCGAAAT 59.000 36.000 0.00 0.00 35.48 2.17
1700 1855 5.368145 ACTATGGAGCAATCATAAGCGAAA 58.632 37.500 0.00 0.00 35.48 3.46
1701 1856 4.960938 ACTATGGAGCAATCATAAGCGAA 58.039 39.130 0.00 0.00 35.48 4.70
1702 1857 4.039124 TGACTATGGAGCAATCATAAGCGA 59.961 41.667 0.00 0.00 35.48 4.93
1703 1858 4.309933 TGACTATGGAGCAATCATAAGCG 58.690 43.478 0.00 0.00 35.48 4.68
1704 1859 6.179504 CATGACTATGGAGCAATCATAAGC 57.820 41.667 0.00 0.00 0.00 3.09
1747 1902 4.059511 TCGCACGTCCATCTTAAGAAAAA 58.940 39.130 9.71 0.00 0.00 1.94
1749 1904 3.306917 TCGCACGTCCATCTTAAGAAA 57.693 42.857 9.71 0.00 0.00 2.52
1750 1905 3.186909 CATCGCACGTCCATCTTAAGAA 58.813 45.455 9.71 0.00 0.00 2.52
1751 1906 2.481276 CCATCGCACGTCCATCTTAAGA 60.481 50.000 7.82 7.82 0.00 2.10
1752 1907 1.860950 CCATCGCACGTCCATCTTAAG 59.139 52.381 0.00 0.00 0.00 1.85
1753 1908 1.478916 TCCATCGCACGTCCATCTTAA 59.521 47.619 0.00 0.00 0.00 1.85
1754 1909 1.107945 TCCATCGCACGTCCATCTTA 58.892 50.000 0.00 0.00 0.00 2.10
1755 1910 0.460284 GTCCATCGCACGTCCATCTT 60.460 55.000 0.00 0.00 0.00 2.40
1756 1911 1.141881 GTCCATCGCACGTCCATCT 59.858 57.895 0.00 0.00 0.00 2.90
1764 1919 2.885644 ATCGCACGTCCATCGCAC 60.886 61.111 0.00 0.00 44.19 5.34
1766 1921 3.630148 CCATCGCACGTCCATCGC 61.630 66.667 0.00 0.00 44.19 4.58
1767 1922 1.300156 ATCCATCGCACGTCCATCG 60.300 57.895 0.00 0.00 46.00 3.84
1768 1923 1.835483 GCATCCATCGCACGTCCATC 61.835 60.000 0.00 0.00 0.00 3.51
1769 1924 1.889105 GCATCCATCGCACGTCCAT 60.889 57.895 0.00 0.00 0.00 3.41
1770 1925 1.671901 TAGCATCCATCGCACGTCCA 61.672 55.000 0.00 0.00 0.00 4.02
1771 1926 1.067416 TAGCATCCATCGCACGTCC 59.933 57.895 0.00 0.00 0.00 4.79
1772 1927 1.215655 GGTAGCATCCATCGCACGTC 61.216 60.000 0.00 0.00 0.00 4.34
1773 1928 1.227263 GGTAGCATCCATCGCACGT 60.227 57.895 0.00 0.00 0.00 4.49
1774 1929 2.302952 CGGTAGCATCCATCGCACG 61.303 63.158 0.00 0.00 0.00 5.34
1775 1930 2.598632 GCGGTAGCATCCATCGCAC 61.599 63.158 0.00 0.00 44.87 5.34
1776 1931 2.280119 GCGGTAGCATCCATCGCA 60.280 61.111 0.00 0.00 44.87 5.10
1785 1940 1.891011 TCTCAAAGAGAGGCGGTAGCA 60.891 52.381 0.00 0.00 44.81 3.49
1786 1941 0.818296 TCTCAAAGAGAGGCGGTAGC 59.182 55.000 0.00 0.00 44.81 3.58
1787 1942 2.223923 CCATCTCAAAGAGAGGCGGTAG 60.224 54.545 3.34 0.00 42.26 3.18
1801 2252 1.141665 CCATCGCACGTCCATCTCA 59.858 57.895 0.00 0.00 0.00 3.27
1827 2296 6.422223 CCAAGTTCACTTATATTGTCATCGC 58.578 40.000 0.00 0.00 34.28 4.58
1830 2299 6.186957 TGGCCAAGTTCACTTATATTGTCAT 58.813 36.000 0.61 0.00 34.28 3.06
1832 2301 5.648092 ACTGGCCAAGTTCACTTATATTGTC 59.352 40.000 7.01 0.00 34.57 3.18
1834 2303 5.415701 ACACTGGCCAAGTTCACTTATATTG 59.584 40.000 7.01 0.00 36.83 1.90
1835 2304 5.570320 ACACTGGCCAAGTTCACTTATATT 58.430 37.500 7.01 0.00 36.83 1.28
1836 2305 5.179452 ACACTGGCCAAGTTCACTTATAT 57.821 39.130 7.01 0.00 36.83 0.86
1837 2306 4.634012 ACACTGGCCAAGTTCACTTATA 57.366 40.909 7.01 0.00 36.83 0.98
1840 2309 2.949644 GTTACACTGGCCAAGTTCACTT 59.050 45.455 14.98 0.00 36.83 3.16
1841 2310 2.092646 TGTTACACTGGCCAAGTTCACT 60.093 45.455 14.98 0.00 36.83 3.41
1842 2311 2.032924 GTGTTACACTGGCCAAGTTCAC 59.967 50.000 14.98 17.83 36.83 3.18
1843 2312 2.294074 GTGTTACACTGGCCAAGTTCA 58.706 47.619 14.98 11.87 36.83 3.18
1844 2313 1.263217 CGTGTTACACTGGCCAAGTTC 59.737 52.381 14.98 9.82 36.83 3.01
1845 2314 1.305201 CGTGTTACACTGGCCAAGTT 58.695 50.000 14.98 0.47 36.83 2.66
1846 2315 0.179468 ACGTGTTACACTGGCCAAGT 59.821 50.000 7.01 11.55 40.93 3.16
1847 2316 2.066262 CTACGTGTTACACTGGCCAAG 58.934 52.381 7.01 4.88 31.34 3.61
1848 2317 1.270412 CCTACGTGTTACACTGGCCAA 60.270 52.381 7.01 0.00 31.34 4.52
1849 2318 0.319083 CCTACGTGTTACACTGGCCA 59.681 55.000 13.86 4.71 31.34 5.36
1851 2320 0.320073 TGCCTACGTGTTACACTGGC 60.320 55.000 25.21 25.21 40.42 4.85
1852 2321 2.157834 TTGCCTACGTGTTACACTGG 57.842 50.000 13.86 12.92 31.34 4.00
1853 2322 3.303526 GGTTTTGCCTACGTGTTACACTG 60.304 47.826 13.86 9.46 31.34 3.66
1854 2323 2.874086 GGTTTTGCCTACGTGTTACACT 59.126 45.455 13.86 3.60 31.34 3.55
1855 2324 2.613133 TGGTTTTGCCTACGTGTTACAC 59.387 45.455 5.27 5.27 38.35 2.90
1856 2325 2.915349 TGGTTTTGCCTACGTGTTACA 58.085 42.857 0.00 0.00 38.35 2.41
1857 2326 3.120095 GGATGGTTTTGCCTACGTGTTAC 60.120 47.826 0.00 0.00 38.35 2.50
1859 2328 1.883926 GGATGGTTTTGCCTACGTGTT 59.116 47.619 0.00 0.00 38.35 3.32
1860 2329 1.073284 AGGATGGTTTTGCCTACGTGT 59.927 47.619 0.00 0.00 38.35 4.49
1861 2330 1.737793 GAGGATGGTTTTGCCTACGTG 59.262 52.381 0.00 0.00 38.35 4.49
1862 2331 1.349688 TGAGGATGGTTTTGCCTACGT 59.650 47.619 0.00 0.00 38.35 3.57
1863 2332 2.107950 TGAGGATGGTTTTGCCTACG 57.892 50.000 0.00 0.00 38.35 3.51
1864 2333 4.556233 GTTTTGAGGATGGTTTTGCCTAC 58.444 43.478 0.00 0.00 38.35 3.18
1865 2334 3.576550 GGTTTTGAGGATGGTTTTGCCTA 59.423 43.478 0.00 0.00 38.35 3.93
1867 2336 2.103941 TGGTTTTGAGGATGGTTTTGCC 59.896 45.455 0.00 0.00 37.90 4.52
1868 2337 3.130633 GTGGTTTTGAGGATGGTTTTGC 58.869 45.455 0.00 0.00 0.00 3.68
1869 2338 3.133721 TGGTGGTTTTGAGGATGGTTTTG 59.866 43.478 0.00 0.00 0.00 2.44
1870 2339 3.133901 GTGGTGGTTTTGAGGATGGTTTT 59.866 43.478 0.00 0.00 0.00 2.43
1871 2340 2.698274 GTGGTGGTTTTGAGGATGGTTT 59.302 45.455 0.00 0.00 0.00 3.27
1872 2341 2.316108 GTGGTGGTTTTGAGGATGGTT 58.684 47.619 0.00 0.00 0.00 3.67
1873 2342 1.817740 CGTGGTGGTTTTGAGGATGGT 60.818 52.381 0.00 0.00 0.00 3.55
1876 2345 1.697432 TCTCGTGGTGGTTTTGAGGAT 59.303 47.619 0.00 0.00 0.00 3.24
1877 2346 1.070134 CTCTCGTGGTGGTTTTGAGGA 59.930 52.381 0.00 0.00 0.00 3.71
1879 2348 0.868406 GCTCTCGTGGTGGTTTTGAG 59.132 55.000 0.00 0.00 0.00 3.02
1880 2349 0.534203 GGCTCTCGTGGTGGTTTTGA 60.534 55.000 0.00 0.00 0.00 2.69
1882 2351 0.182775 AAGGCTCTCGTGGTGGTTTT 59.817 50.000 0.00 0.00 0.00 2.43
1883 2352 1.002087 CTAAGGCTCTCGTGGTGGTTT 59.998 52.381 0.00 0.00 0.00 3.27
1884 2353 0.608640 CTAAGGCTCTCGTGGTGGTT 59.391 55.000 0.00 0.00 0.00 3.67
1885 2354 1.258445 CCTAAGGCTCTCGTGGTGGT 61.258 60.000 0.00 0.00 0.00 4.16
1886 2355 1.517832 CCTAAGGCTCTCGTGGTGG 59.482 63.158 0.00 0.00 0.00 4.61
1887 2356 1.517832 CCCTAAGGCTCTCGTGGTG 59.482 63.158 0.00 0.00 0.00 4.17
1888 2357 1.686110 CCCCTAAGGCTCTCGTGGT 60.686 63.158 0.00 0.00 0.00 4.16
1889 2358 2.435693 CCCCCTAAGGCTCTCGTGG 61.436 68.421 0.00 0.00 0.00 4.94
1892 2361 0.760945 ATCACCCCCTAAGGCTCTCG 60.761 60.000 0.00 0.00 0.00 4.04
1895 2364 1.285078 ACAAATCACCCCCTAAGGCTC 59.715 52.381 0.00 0.00 0.00 4.70
1897 2366 1.285078 AGACAAATCACCCCCTAAGGC 59.715 52.381 0.00 0.00 0.00 4.35
1899 2368 2.308866 ACCAGACAAATCACCCCCTAAG 59.691 50.000 0.00 0.00 0.00 2.18
1901 2370 2.053747 ACCAGACAAATCACCCCCTA 57.946 50.000 0.00 0.00 0.00 3.53
1902 2371 1.158007 AACCAGACAAATCACCCCCT 58.842 50.000 0.00 0.00 0.00 4.79
1904 2373 2.037121 CCAAAACCAGACAAATCACCCC 59.963 50.000 0.00 0.00 0.00 4.95
1905 2374 2.962421 TCCAAAACCAGACAAATCACCC 59.038 45.455 0.00 0.00 0.00 4.61
1906 2375 4.664150 TTCCAAAACCAGACAAATCACC 57.336 40.909 0.00 0.00 0.00 4.02
1907 2376 5.660460 ACTTTCCAAAACCAGACAAATCAC 58.340 37.500 0.00 0.00 0.00 3.06
1908 2377 5.930837 ACTTTCCAAAACCAGACAAATCA 57.069 34.783 0.00 0.00 0.00 2.57
1909 2378 6.337356 TCAACTTTCCAAAACCAGACAAATC 58.663 36.000 0.00 0.00 0.00 2.17
1910 2379 6.154363 TCTCAACTTTCCAAAACCAGACAAAT 59.846 34.615 0.00 0.00 0.00 2.32
1911 2380 5.478679 TCTCAACTTTCCAAAACCAGACAAA 59.521 36.000 0.00 0.00 0.00 2.83
1912 2381 5.013547 TCTCAACTTTCCAAAACCAGACAA 58.986 37.500 0.00 0.00 0.00 3.18
1913 2382 4.594970 TCTCAACTTTCCAAAACCAGACA 58.405 39.130 0.00 0.00 0.00 3.41
1914 2383 4.036852 CCTCTCAACTTTCCAAAACCAGAC 59.963 45.833 0.00 0.00 0.00 3.51
1915 2384 4.080015 TCCTCTCAACTTTCCAAAACCAGA 60.080 41.667 0.00 0.00 0.00 3.86
1916 2385 4.207165 TCCTCTCAACTTTCCAAAACCAG 58.793 43.478 0.00 0.00 0.00 4.00
1922 2391 5.567037 TCTTCATCCTCTCAACTTTCCAA 57.433 39.130 0.00 0.00 0.00 3.53
1924 2393 5.122519 GGATCTTCATCCTCTCAACTTTCC 58.877 45.833 0.00 0.00 45.06 3.13
1937 2406 4.141688 ACCTCTAAAACCGGGATCTTCATC 60.142 45.833 6.32 0.00 0.00 2.92
1938 2407 3.780850 ACCTCTAAAACCGGGATCTTCAT 59.219 43.478 6.32 0.00 0.00 2.57
1939 2408 3.178865 ACCTCTAAAACCGGGATCTTCA 58.821 45.455 6.32 0.00 0.00 3.02
1940 2409 3.197116 TGACCTCTAAAACCGGGATCTTC 59.803 47.826 6.32 0.00 0.00 2.87
1941 2410 3.178865 TGACCTCTAAAACCGGGATCTT 58.821 45.455 6.32 0.00 0.00 2.40
1942 2411 2.766828 CTGACCTCTAAAACCGGGATCT 59.233 50.000 6.32 0.00 0.00 2.75
1943 2412 2.158943 CCTGACCTCTAAAACCGGGATC 60.159 54.545 6.32 0.00 0.00 3.36
1944 2413 1.838077 CCTGACCTCTAAAACCGGGAT 59.162 52.381 6.32 0.00 0.00 3.85
1945 2414 1.272807 CCTGACCTCTAAAACCGGGA 58.727 55.000 6.32 0.00 0.00 5.14
1946 2415 0.252197 CCCTGACCTCTAAAACCGGG 59.748 60.000 6.32 0.00 0.00 5.73
1947 2416 0.252197 CCCCTGACCTCTAAAACCGG 59.748 60.000 0.00 0.00 0.00 5.28
1948 2417 0.252197 CCCCCTGACCTCTAAAACCG 59.748 60.000 0.00 0.00 0.00 4.44
1949 2418 1.369403 ACCCCCTGACCTCTAAAACC 58.631 55.000 0.00 0.00 0.00 3.27
1950 2419 4.018688 ACATAACCCCCTGACCTCTAAAAC 60.019 45.833 0.00 0.00 0.00 2.43
1951 2420 4.018779 CACATAACCCCCTGACCTCTAAAA 60.019 45.833 0.00 0.00 0.00 1.52
1952 2421 3.521937 CACATAACCCCCTGACCTCTAAA 59.478 47.826 0.00 0.00 0.00 1.85
1953 2422 3.112263 CACATAACCCCCTGACCTCTAA 58.888 50.000 0.00 0.00 0.00 2.10
1954 2423 2.628559 CCACATAACCCCCTGACCTCTA 60.629 54.545 0.00 0.00 0.00 2.43
1955 2424 1.584724 CACATAACCCCCTGACCTCT 58.415 55.000 0.00 0.00 0.00 3.69
1956 2425 0.546598 CCACATAACCCCCTGACCTC 59.453 60.000 0.00 0.00 0.00 3.85
1957 2426 1.571773 GCCACATAACCCCCTGACCT 61.572 60.000 0.00 0.00 0.00 3.85
1958 2427 1.076995 GCCACATAACCCCCTGACC 60.077 63.158 0.00 0.00 0.00 4.02
1959 2428 1.076995 GGCCACATAACCCCCTGAC 60.077 63.158 0.00 0.00 0.00 3.51
1960 2429 1.143329 TTGGCCACATAACCCCCTGA 61.143 55.000 3.88 0.00 0.00 3.86
1961 2430 0.252012 TTTGGCCACATAACCCCCTG 60.252 55.000 3.88 0.00 0.00 4.45
1962 2431 0.489567 TTTTGGCCACATAACCCCCT 59.510 50.000 3.88 0.00 0.00 4.79
1963 2432 0.611200 GTTTTGGCCACATAACCCCC 59.389 55.000 3.88 0.00 33.95 5.40
1964 2433 0.245266 CGTTTTGGCCACATAACCCC 59.755 55.000 3.88 0.00 35.82 4.95
1965 2434 0.963225 ACGTTTTGGCCACATAACCC 59.037 50.000 3.88 0.00 35.82 4.11
1966 2435 1.609555 TCACGTTTTGGCCACATAACC 59.390 47.619 3.88 0.00 35.82 2.85
1967 2436 3.569250 ATCACGTTTTGGCCACATAAC 57.431 42.857 3.88 9.77 35.86 1.89
1968 2437 4.328536 AGTATCACGTTTTGGCCACATAA 58.671 39.130 3.88 0.00 0.00 1.90
1969 2438 3.945346 AGTATCACGTTTTGGCCACATA 58.055 40.909 3.88 0.00 0.00 2.29
1970 2439 2.790433 AGTATCACGTTTTGGCCACAT 58.210 42.857 3.88 0.00 0.00 3.21
1971 2440 2.264005 AGTATCACGTTTTGGCCACA 57.736 45.000 3.88 0.00 0.00 4.17
1972 2441 2.812011 AGAAGTATCACGTTTTGGCCAC 59.188 45.455 3.88 0.00 0.00 5.01
1973 2442 2.811431 CAGAAGTATCACGTTTTGGCCA 59.189 45.455 0.00 0.00 0.00 5.36
1974 2443 2.161609 CCAGAAGTATCACGTTTTGGCC 59.838 50.000 0.00 0.00 0.00 5.36
1975 2444 2.161609 CCCAGAAGTATCACGTTTTGGC 59.838 50.000 0.00 0.00 0.00 4.52
1976 2445 2.747446 CCCCAGAAGTATCACGTTTTGG 59.253 50.000 0.00 0.00 0.00 3.28
1977 2446 2.747446 CCCCCAGAAGTATCACGTTTTG 59.253 50.000 0.00 0.00 0.00 2.44
1978 2447 2.374170 ACCCCCAGAAGTATCACGTTTT 59.626 45.455 0.00 0.00 0.00 2.43
1979 2448 1.982958 ACCCCCAGAAGTATCACGTTT 59.017 47.619 0.00 0.00 0.00 3.60
1980 2449 1.652947 ACCCCCAGAAGTATCACGTT 58.347 50.000 0.00 0.00 0.00 3.99
1981 2450 1.652947 AACCCCCAGAAGTATCACGT 58.347 50.000 0.00 0.00 0.00 4.49
1982 2451 5.740290 ATATAACCCCCAGAAGTATCACG 57.260 43.478 0.00 0.00 0.00 4.35
1983 2452 7.234988 AGTGTATATAACCCCCAGAAGTATCAC 59.765 40.741 0.00 0.00 0.00 3.06
1984 2453 7.310634 AGTGTATATAACCCCCAGAAGTATCA 58.689 38.462 0.00 0.00 0.00 2.15
1985 2454 7.793948 AGTGTATATAACCCCCAGAAGTATC 57.206 40.000 0.00 0.00 0.00 2.24
1986 2455 8.017251 AGAAGTGTATATAACCCCCAGAAGTAT 58.983 37.037 0.00 0.00 0.00 2.12
1987 2456 7.367828 AGAAGTGTATATAACCCCCAGAAGTA 58.632 38.462 0.00 0.00 0.00 2.24
1988 2457 6.210522 AGAAGTGTATATAACCCCCAGAAGT 58.789 40.000 0.00 0.00 0.00 3.01
1989 2458 6.749036 AGAAGTGTATATAACCCCCAGAAG 57.251 41.667 0.00 0.00 0.00 2.85
1990 2459 7.404980 AGAAAGAAGTGTATATAACCCCCAGAA 59.595 37.037 0.00 0.00 0.00 3.02
1991 2460 6.906901 AGAAAGAAGTGTATATAACCCCCAGA 59.093 38.462 0.00 0.00 0.00 3.86
1992 2461 7.138054 AGAAAGAAGTGTATATAACCCCCAG 57.862 40.000 0.00 0.00 0.00 4.45
1993 2462 7.519347 AAGAAAGAAGTGTATATAACCCCCA 57.481 36.000 0.00 0.00 0.00 4.96
1994 2463 8.050930 TCAAAGAAAGAAGTGTATATAACCCCC 58.949 37.037 0.00 0.00 0.00 5.40
1995 2464 9.628500 ATCAAAGAAAGAAGTGTATATAACCCC 57.372 33.333 0.00 0.00 0.00 4.95
1997 2466 9.937175 GCATCAAAGAAAGAAGTGTATATAACC 57.063 33.333 0.00 0.00 0.00 2.85
2000 2469 9.330063 CCAGCATCAAAGAAAGAAGTGTATATA 57.670 33.333 0.00 0.00 0.00 0.86
2001 2470 8.049117 TCCAGCATCAAAGAAAGAAGTGTATAT 58.951 33.333 0.00 0.00 0.00 0.86
2002 2471 7.334421 GTCCAGCATCAAAGAAAGAAGTGTATA 59.666 37.037 0.00 0.00 0.00 1.47
2003 2472 6.150140 GTCCAGCATCAAAGAAAGAAGTGTAT 59.850 38.462 0.00 0.00 0.00 2.29
2004 2473 5.470098 GTCCAGCATCAAAGAAAGAAGTGTA 59.530 40.000 0.00 0.00 0.00 2.90
2005 2474 4.276926 GTCCAGCATCAAAGAAAGAAGTGT 59.723 41.667 0.00 0.00 0.00 3.55
2006 2475 4.320788 GGTCCAGCATCAAAGAAAGAAGTG 60.321 45.833 0.00 0.00 0.00 3.16
2007 2476 3.823304 GGTCCAGCATCAAAGAAAGAAGT 59.177 43.478 0.00 0.00 0.00 3.01
2008 2477 4.077822 AGGTCCAGCATCAAAGAAAGAAG 58.922 43.478 0.00 0.00 0.00 2.85
2009 2478 4.104383 AGGTCCAGCATCAAAGAAAGAA 57.896 40.909 0.00 0.00 0.00 2.52
2010 2479 3.795688 AGGTCCAGCATCAAAGAAAGA 57.204 42.857 0.00 0.00 0.00 2.52
2011 2480 3.057033 CCAAGGTCCAGCATCAAAGAAAG 60.057 47.826 0.00 0.00 0.00 2.62
2012 2481 2.892852 CCAAGGTCCAGCATCAAAGAAA 59.107 45.455 0.00 0.00 0.00 2.52
2013 2482 2.517959 CCAAGGTCCAGCATCAAAGAA 58.482 47.619 0.00 0.00 0.00 2.52
2014 2483 1.887956 GCCAAGGTCCAGCATCAAAGA 60.888 52.381 0.00 0.00 0.00 2.52
2015 2484 0.529378 GCCAAGGTCCAGCATCAAAG 59.471 55.000 0.00 0.00 0.00 2.77
2016 2485 1.243342 CGCCAAGGTCCAGCATCAAA 61.243 55.000 0.00 0.00 0.00 2.69
2017 2486 1.675310 CGCCAAGGTCCAGCATCAA 60.675 57.895 0.00 0.00 0.00 2.57
2018 2487 1.913951 ATCGCCAAGGTCCAGCATCA 61.914 55.000 0.00 0.00 0.00 3.07
2019 2488 0.106708 TATCGCCAAGGTCCAGCATC 59.893 55.000 0.00 0.00 0.00 3.91
2020 2489 0.767375 ATATCGCCAAGGTCCAGCAT 59.233 50.000 0.00 0.00 0.00 3.79
2023 2492 1.597742 CCAATATCGCCAAGGTCCAG 58.402 55.000 0.00 0.00 0.00 3.86
2025 2494 0.465460 TGCCAATATCGCCAAGGTCC 60.465 55.000 0.00 0.00 0.00 4.46
2046 2515 1.852067 ATTTTGCGGCAGACGGTGTC 61.852 55.000 1.67 0.00 44.51 3.67
2052 2521 3.243643 GCAATAATCATTTTGCGGCAGAC 59.756 43.478 1.67 0.00 38.88 3.51
2062 2531 3.128589 ACGCTTGGTCGCAATAATCATTT 59.871 39.130 0.00 0.00 0.00 2.32
2063 2532 2.682856 ACGCTTGGTCGCAATAATCATT 59.317 40.909 0.00 0.00 0.00 2.57
2086 2564 0.678048 GGAGGTGTTGCATGGTCTCC 60.678 60.000 9.78 9.78 34.78 3.71
2089 2567 0.036732 TGAGGAGGTGTTGCATGGTC 59.963 55.000 0.00 0.00 0.00 4.02
2119 2598 3.077359 CAAAGCCAAACCTACCTGAGAG 58.923 50.000 0.00 0.00 0.00 3.20
2124 2603 0.187361 TGCCAAAGCCAAACCTACCT 59.813 50.000 0.00 0.00 38.69 3.08
2142 2621 0.683828 TACCACCCAAGCATGCCATG 60.684 55.000 15.66 14.00 0.00 3.66
2149 2628 3.642503 CCCGGTACCACCCAAGCA 61.643 66.667 13.54 0.00 33.75 3.91
2182 2661 2.474816 GAGAAAATCCTCGTCATCGGG 58.525 52.381 0.00 0.00 37.69 5.14
2205 2684 0.549950 AGGTGATTGAGGCCCATCAG 59.450 55.000 9.61 0.00 0.00 2.90
2254 2733 1.004918 GGTTCACCAGTGACCCGAG 60.005 63.158 0.00 0.00 39.66 4.63
2257 2736 0.693049 ATGAGGTTCACCAGTGACCC 59.307 55.000 6.27 6.27 41.85 4.46
2258 2737 1.611673 CCATGAGGTTCACCAGTGACC 60.612 57.143 0.00 5.75 39.66 4.02
2259 2738 1.813513 CCATGAGGTTCACCAGTGAC 58.186 55.000 0.00 0.00 39.66 3.67
2303 3314 3.876914 CCAACACGATAATGTATGCTGGT 59.123 43.478 0.00 0.00 30.75 4.00
2338 3349 2.009774 CCTTCGGAGCACACAAATAGG 58.990 52.381 0.00 0.00 0.00 2.57
2340 3351 2.301870 AGTCCTTCGGAGCACACAAATA 59.698 45.455 0.00 0.00 29.39 1.40
2342 3353 0.468226 AGTCCTTCGGAGCACACAAA 59.532 50.000 0.00 0.00 29.39 2.83
2343 3354 0.468226 AAGTCCTTCGGAGCACACAA 59.532 50.000 0.00 0.00 29.39 3.33
2347 3358 0.033504 TGACAAGTCCTTCGGAGCAC 59.966 55.000 0.00 0.00 29.39 4.40
2369 3380 5.027099 GCAATGACAAATGCAAACGTTTTT 58.973 33.333 11.66 0.12 42.12 1.94
2376 3387 1.271271 GGGGGCAATGACAAATGCAAA 60.271 47.619 15.82 0.00 44.32 3.68
2383 3394 1.077787 CGCTAGGGGGCAATGACAA 60.078 57.895 0.00 0.00 0.00 3.18
2385 3396 1.095807 GTTCGCTAGGGGGCAATGAC 61.096 60.000 6.99 0.00 0.00 3.06
2386 3397 1.223487 GTTCGCTAGGGGGCAATGA 59.777 57.895 6.99 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.