Multiple sequence alignment - TraesCS4A01G232400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G232400 chr4A 100.000 3053 0 0 1 3053 541986324 541989376 0.000000e+00 5638.0
1 TraesCS4A01G232400 chr4B 89.302 2234 148 32 545 2721 82165692 82163493 0.000000e+00 2717.0
2 TraesCS4A01G232400 chr4B 95.588 136 4 1 10 143 82171194 82171059 1.840000e-52 217.0
3 TraesCS4A01G232400 chr4B 93.985 133 6 2 382 512 210282885 210282753 1.860000e-47 200.0
4 TraesCS4A01G232400 chr4B 93.939 132 6 1 381 510 294107703 294107572 6.680000e-47 198.0
5 TraesCS4A01G232400 chr4B 97.222 36 1 0 314 349 82165768 82165733 9.140000e-06 62.1
6 TraesCS4A01G232400 chr4D 90.718 1950 87 28 766 2662 55251595 55249687 0.000000e+00 2512.0
7 TraesCS4A01G232400 chr4D 87.855 387 26 10 3 372 55252281 55251899 4.670000e-118 435.0
8 TraesCS4A01G232400 chr4D 88.255 298 28 4 506 803 55251888 55251598 1.740000e-92 350.0
9 TraesCS4A01G232400 chr5A 94.030 134 6 2 380 511 81476815 81476682 5.160000e-48 202.0
10 TraesCS4A01G232400 chr5A 94.615 130 5 2 382 509 688512347 688512218 1.860000e-47 200.0
11 TraesCS4A01G232400 chr7A 94.615 130 5 2 383 510 351612883 351612754 1.860000e-47 200.0
12 TraesCS4A01G232400 chr1A 94.615 130 5 2 381 508 14080641 14080512 1.860000e-47 200.0
13 TraesCS4A01G232400 chr1A 92.754 138 6 4 380 513 311814214 311814077 2.400000e-46 196.0
14 TraesCS4A01G232400 chr5B 94.531 128 5 1 382 507 82212301 82212174 2.400000e-46 196.0
15 TraesCS4A01G232400 chr3A 91.667 144 9 3 367 508 412827805 412827663 2.400000e-46 196.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G232400 chr4A 541986324 541989376 3052 False 5638.00 5638 100.000000 1 3053 1 chr4A.!!$F1 3052
1 TraesCS4A01G232400 chr4B 82163493 82165768 2275 True 1389.55 2717 93.262000 314 2721 2 chr4B.!!$R4 2407
2 TraesCS4A01G232400 chr4D 55249687 55252281 2594 True 1099.00 2512 88.942667 3 2662 3 chr4D.!!$R1 2659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
398 415 0.033796 ATGTACTCCCTCCGTTCCGA 60.034 55.0 0.0 0.0 0.0 4.55 F
1201 1269 0.035343 GTTTCCCTCCCTTTCCTCCG 60.035 60.0 0.0 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1995 2098 0.112412 TTGACCTCCCCCTGCTTTTC 59.888 55.0 0.00 0.0 0.0 2.29 R
3017 3148 0.107654 ACCTCAACTAAGCGGCCATC 60.108 55.0 2.24 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.290493 TGCTACGTAATGGATGGATCTTT 57.710 39.130 0.00 0.00 0.00 2.52
34 35 6.936900 CGTAATGGATGGATCTTTTAGGATGT 59.063 38.462 0.00 0.00 0.00 3.06
40 41 8.556589 TGGATGGATCTTTTAGGATGTTTCTTA 58.443 33.333 0.00 0.00 0.00 2.10
77 83 4.366267 ACTATGAGGGTCTTGATCTTGGT 58.634 43.478 0.00 0.00 0.00 3.67
94 100 3.448093 TGGTCCTCAATGTTTGGCATA 57.552 42.857 0.00 0.00 36.67 3.14
129 135 5.957771 TGAACTTGGCCTTCATCTAGTAT 57.042 39.130 3.32 0.00 0.00 2.12
130 136 7.272978 GTTGAACTTGGCCTTCATCTAGTATA 58.727 38.462 3.32 0.00 0.00 1.47
131 137 6.817184 TGAACTTGGCCTTCATCTAGTATAC 58.183 40.000 3.32 0.00 0.00 1.47
132 138 6.611642 TGAACTTGGCCTTCATCTAGTATACT 59.388 38.462 10.87 10.87 0.00 2.12
133 139 7.783119 TGAACTTGGCCTTCATCTAGTATACTA 59.217 37.037 12.05 12.05 0.00 1.82
134 140 7.527568 ACTTGGCCTTCATCTAGTATACTAC 57.472 40.000 8.59 0.00 0.00 2.73
135 141 7.299134 ACTTGGCCTTCATCTAGTATACTACT 58.701 38.462 8.59 0.00 42.68 2.57
136 142 7.785506 ACTTGGCCTTCATCTAGTATACTACTT 59.214 37.037 8.59 0.00 40.14 2.24
137 143 9.298250 CTTGGCCTTCATCTAGTATACTACTTA 57.702 37.037 8.59 0.00 40.14 2.24
138 144 9.650714 TTGGCCTTCATCTAGTATACTACTTAA 57.349 33.333 8.59 1.38 40.14 1.85
231 237 9.807649 AGCATAATTTCAATGGTCTTAATTGTC 57.192 29.630 0.00 0.00 36.58 3.18
351 368 4.821414 AACATTTATTTGCACAATCGCG 57.179 36.364 0.00 0.00 33.35 5.87
358 375 8.689954 CATTTATTTGCACAATCGCGTTAATAT 58.310 29.630 5.77 0.00 33.35 1.28
359 376 7.601881 TTATTTGCACAATCGCGTTAATATG 57.398 32.000 5.77 0.00 33.35 1.78
365 382 3.059597 ACAATCGCGTTAATATGAGCAGC 60.060 43.478 5.77 0.00 0.00 5.25
372 389 5.612865 GCGTTAATATGAGCAGCTAATCAC 58.387 41.667 0.00 0.00 0.00 3.06
373 390 5.389935 GCGTTAATATGAGCAGCTAATCACC 60.390 44.000 0.00 0.00 0.00 4.02
374 391 5.928839 CGTTAATATGAGCAGCTAATCACCT 59.071 40.000 0.00 0.00 0.00 4.00
380 397 6.678568 ATGAGCAGCTAATCACCTAGTAAT 57.321 37.500 0.00 0.00 0.00 1.89
382 399 5.363868 TGAGCAGCTAATCACCTAGTAATGT 59.636 40.000 0.00 0.00 0.00 2.71
383 400 6.549736 TGAGCAGCTAATCACCTAGTAATGTA 59.450 38.462 0.00 0.00 0.00 2.29
384 401 6.750148 AGCAGCTAATCACCTAGTAATGTAC 58.250 40.000 0.00 0.00 0.00 2.90
385 402 6.551601 AGCAGCTAATCACCTAGTAATGTACT 59.448 38.462 0.00 0.00 42.68 2.73
386 403 6.864165 GCAGCTAATCACCTAGTAATGTACTC 59.136 42.308 0.00 0.00 40.14 2.59
387 404 7.371936 CAGCTAATCACCTAGTAATGTACTCC 58.628 42.308 0.00 0.00 40.14 3.85
388 405 6.494146 AGCTAATCACCTAGTAATGTACTCCC 59.506 42.308 0.00 0.00 40.14 4.30
389 406 6.494146 GCTAATCACCTAGTAATGTACTCCCT 59.506 42.308 0.00 0.00 40.14 4.20
390 407 6.980416 AATCACCTAGTAATGTACTCCCTC 57.020 41.667 0.00 0.00 40.14 4.30
391 408 4.801164 TCACCTAGTAATGTACTCCCTCC 58.199 47.826 0.00 0.00 40.14 4.30
392 409 3.568853 CACCTAGTAATGTACTCCCTCCG 59.431 52.174 0.00 0.00 40.14 4.63
393 410 3.203934 ACCTAGTAATGTACTCCCTCCGT 59.796 47.826 0.00 0.00 40.14 4.69
394 411 4.213513 CCTAGTAATGTACTCCCTCCGTT 58.786 47.826 0.00 0.00 40.14 4.44
395 412 4.277921 CCTAGTAATGTACTCCCTCCGTTC 59.722 50.000 0.00 0.00 40.14 3.95
396 413 3.029570 AGTAATGTACTCCCTCCGTTCC 58.970 50.000 0.00 0.00 32.47 3.62
397 414 0.822164 AATGTACTCCCTCCGTTCCG 59.178 55.000 0.00 0.00 0.00 4.30
398 415 0.033796 ATGTACTCCCTCCGTTCCGA 60.034 55.000 0.00 0.00 0.00 4.55
399 416 0.251297 TGTACTCCCTCCGTTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
400 417 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
401 418 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
402 419 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
403 420 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
404 421 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
405 422 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
406 423 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
407 424 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
408 425 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
409 426 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
410 427 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
411 428 3.991773 TCCGTTCCGAATTACTTGTCTTG 59.008 43.478 0.00 0.00 0.00 3.02
412 429 3.744426 CCGTTCCGAATTACTTGTCTTGT 59.256 43.478 0.00 0.00 0.00 3.16
413 430 4.925054 CCGTTCCGAATTACTTGTCTTGTA 59.075 41.667 0.00 0.00 0.00 2.41
414 431 5.579511 CCGTTCCGAATTACTTGTCTTGTAT 59.420 40.000 0.00 0.00 0.00 2.29
415 432 6.091713 CCGTTCCGAATTACTTGTCTTGTATT 59.908 38.462 0.00 0.00 0.00 1.89
416 433 7.360607 CCGTTCCGAATTACTTGTCTTGTATTT 60.361 37.037 0.00 0.00 0.00 1.40
417 434 7.477422 CGTTCCGAATTACTTGTCTTGTATTTG 59.523 37.037 0.00 0.00 0.00 2.32
418 435 7.972832 TCCGAATTACTTGTCTTGTATTTGT 57.027 32.000 0.00 0.00 0.00 2.83
419 436 8.025243 TCCGAATTACTTGTCTTGTATTTGTC 57.975 34.615 0.00 0.00 0.00 3.18
420 437 7.876068 TCCGAATTACTTGTCTTGTATTTGTCT 59.124 33.333 0.00 0.00 0.00 3.41
421 438 9.146984 CCGAATTACTTGTCTTGTATTTGTCTA 57.853 33.333 0.00 0.00 0.00 2.59
427 444 8.912787 ACTTGTCTTGTATTTGTCTAGATACG 57.087 34.615 0.00 0.00 32.65 3.06
428 445 7.974501 ACTTGTCTTGTATTTGTCTAGATACGG 59.025 37.037 0.00 0.00 32.65 4.02
429 446 7.634671 TGTCTTGTATTTGTCTAGATACGGA 57.365 36.000 0.00 0.00 32.65 4.69
430 447 8.234136 TGTCTTGTATTTGTCTAGATACGGAT 57.766 34.615 0.00 0.00 32.65 4.18
431 448 8.135529 TGTCTTGTATTTGTCTAGATACGGATG 58.864 37.037 0.00 0.00 32.65 3.51
432 449 8.136165 GTCTTGTATTTGTCTAGATACGGATGT 58.864 37.037 0.00 0.00 32.65 3.06
433 450 9.346005 TCTTGTATTTGTCTAGATACGGATGTA 57.654 33.333 0.00 0.00 32.65 2.29
450 467 8.466617 ACGGATGTATCTAGACTCATTTTAGT 57.533 34.615 11.25 7.70 0.00 2.24
451 468 8.353684 ACGGATGTATCTAGACTCATTTTAGTG 58.646 37.037 11.25 3.85 0.00 2.74
452 469 8.353684 CGGATGTATCTAGACTCATTTTAGTGT 58.646 37.037 11.25 0.00 0.00 3.55
453 470 9.469807 GGATGTATCTAGACTCATTTTAGTGTG 57.530 37.037 11.25 0.00 0.00 3.82
459 476 8.824756 TCTAGACTCATTTTAGTGTGATACCT 57.175 34.615 0.00 0.00 0.00 3.08
460 477 8.904834 TCTAGACTCATTTTAGTGTGATACCTC 58.095 37.037 0.00 0.00 0.00 3.85
461 478 6.879400 AGACTCATTTTAGTGTGATACCTCC 58.121 40.000 0.00 0.00 0.00 4.30
462 479 5.661458 ACTCATTTTAGTGTGATACCTCCG 58.339 41.667 0.00 0.00 0.00 4.63
463 480 5.187186 ACTCATTTTAGTGTGATACCTCCGT 59.813 40.000 0.00 0.00 0.00 4.69
464 481 6.379133 ACTCATTTTAGTGTGATACCTCCGTA 59.621 38.462 0.00 0.00 0.00 4.02
465 482 7.069578 ACTCATTTTAGTGTGATACCTCCGTAT 59.930 37.037 0.00 0.00 37.92 3.06
482 499 6.636562 TCCGTATCTGGAGAAATCTAAGAC 57.363 41.667 0.00 0.00 33.05 3.01
483 500 6.127101 TCCGTATCTGGAGAAATCTAAGACA 58.873 40.000 0.00 0.00 33.05 3.41
484 501 6.605995 TCCGTATCTGGAGAAATCTAAGACAA 59.394 38.462 0.00 0.00 33.05 3.18
485 502 6.920758 CCGTATCTGGAGAAATCTAAGACAAG 59.079 42.308 0.00 0.00 0.00 3.16
486 503 7.416890 CCGTATCTGGAGAAATCTAAGACAAGT 60.417 40.741 0.00 0.00 0.00 3.16
487 504 8.622157 CGTATCTGGAGAAATCTAAGACAAGTA 58.378 37.037 0.00 0.00 0.00 2.24
491 508 9.877178 TCTGGAGAAATCTAAGACAAGTAATTC 57.123 33.333 0.00 0.00 0.00 2.17
492 509 8.703604 TGGAGAAATCTAAGACAAGTAATTCG 57.296 34.615 0.00 0.00 0.00 3.34
493 510 7.764443 TGGAGAAATCTAAGACAAGTAATTCGG 59.236 37.037 0.00 0.00 0.00 4.30
494 511 7.980099 GGAGAAATCTAAGACAAGTAATTCGGA 59.020 37.037 0.00 0.00 0.00 4.55
495 512 9.367444 GAGAAATCTAAGACAAGTAATTCGGAA 57.633 33.333 0.00 0.00 0.00 4.30
496 513 9.152595 AGAAATCTAAGACAAGTAATTCGGAAC 57.847 33.333 0.00 0.00 0.00 3.62
519 536 8.522542 AACGAAGGAAGTACTAGAACATCTAT 57.477 34.615 0.00 0.00 0.00 1.98
525 542 7.064847 AGGAAGTACTAGAACATCTATATCGCG 59.935 40.741 0.00 0.00 0.00 5.87
532 549 4.991056 AGAACATCTATATCGCGTTGCAAT 59.009 37.500 5.77 0.00 0.00 3.56
534 551 3.433274 ACATCTATATCGCGTTGCAATGG 59.567 43.478 19.93 10.26 0.00 3.16
693 710 6.385766 TGCATATATGTATCCAACCATCCA 57.614 37.500 14.14 0.00 0.00 3.41
711 728 1.143684 CCAATGATGTAGAGGGTGGGG 59.856 57.143 0.00 0.00 0.00 4.96
713 730 1.511613 ATGATGTAGAGGGTGGGGTG 58.488 55.000 0.00 0.00 0.00 4.61
721 738 0.837940 GAGGGTGGGGTGTTCTATCC 59.162 60.000 0.00 0.00 0.00 2.59
779 836 3.478540 GGCTATCTCGCCCAAAAGT 57.521 52.632 0.00 0.00 44.41 2.66
782 839 2.210961 GCTATCTCGCCCAAAAGTACC 58.789 52.381 0.00 0.00 0.00 3.34
808 865 7.516155 CGAAAATCAGATACGCGGATAAGAAAA 60.516 37.037 12.47 0.00 30.90 2.29
813 870 6.537301 TCAGATACGCGGATAAGAAAATGTTT 59.463 34.615 12.47 0.00 0.00 2.83
814 871 7.065324 TCAGATACGCGGATAAGAAAATGTTTT 59.935 33.333 12.47 0.00 0.00 2.43
816 873 8.548721 AGATACGCGGATAAGAAAATGTTTTAG 58.451 33.333 12.47 0.00 0.00 1.85
820 887 7.536281 ACGCGGATAAGAAAATGTTTTAGTTTC 59.464 33.333 12.47 0.00 42.17 2.78
873 940 1.508632 ACAAGAATGTTCCACGGACG 58.491 50.000 0.00 0.00 35.91 4.79
898 965 2.689034 CCCACCTCACCTCCCCTC 60.689 72.222 0.00 0.00 0.00 4.30
901 968 2.876858 ACCTCACCTCCCCTCCCT 60.877 66.667 0.00 0.00 0.00 4.20
902 969 2.456840 CCTCACCTCCCCTCCCTT 59.543 66.667 0.00 0.00 0.00 3.95
923 990 1.219646 CCCTGCAAACAAACACATGC 58.780 50.000 0.00 0.00 39.22 4.06
984 1051 3.267860 CCAATCGCAGCGCTCCTC 61.268 66.667 7.13 0.00 0.00 3.71
1065 1132 1.342819 AGAGGAAGAGCACACAGACAC 59.657 52.381 0.00 0.00 0.00 3.67
1066 1133 1.069204 GAGGAAGAGCACACAGACACA 59.931 52.381 0.00 0.00 0.00 3.72
1067 1134 1.069823 AGGAAGAGCACACAGACACAG 59.930 52.381 0.00 0.00 0.00 3.66
1068 1135 1.069204 GGAAGAGCACACAGACACAGA 59.931 52.381 0.00 0.00 0.00 3.41
1069 1136 2.131183 GAAGAGCACACAGACACAGAC 58.869 52.381 0.00 0.00 0.00 3.51
1070 1137 1.114627 AGAGCACACAGACACAGACA 58.885 50.000 0.00 0.00 0.00 3.41
1071 1138 1.482182 AGAGCACACAGACACAGACAA 59.518 47.619 0.00 0.00 0.00 3.18
1072 1139 1.863454 GAGCACACAGACACAGACAAG 59.137 52.381 0.00 0.00 0.00 3.16
1073 1140 0.305922 GCACACAGACACAGACAAGC 59.694 55.000 0.00 0.00 0.00 4.01
1114 1181 0.617249 CTCAGCCTCAGGTCTCCCTT 60.617 60.000 0.00 0.00 39.89 3.95
1201 1269 0.035343 GTTTCCCTCCCTTTCCTCCG 60.035 60.000 0.00 0.00 0.00 4.63
1312 1385 0.731417 CCATTCTTTCCTCAGCAGCG 59.269 55.000 0.00 0.00 0.00 5.18
1399 1487 1.364626 ATTCAAGCTCTTCGCCAGCG 61.365 55.000 5.50 5.50 42.14 5.18
1560 1663 2.725008 CTCCTCATCGTCCTCGCC 59.275 66.667 0.00 0.00 36.96 5.54
1620 1723 0.898320 AGGTCCAGTTCATCTCCGTG 59.102 55.000 0.00 0.00 0.00 4.94
1629 1732 0.684479 TCATCTCCGTGGAGGACCTG 60.684 60.000 15.67 8.68 45.98 4.00
1707 1810 2.281900 CGCCGGGTTTGGGAGAAA 60.282 61.111 2.18 0.00 0.00 2.52
1739 1842 1.734465 GTTCACCCGCTTCTTCATCAG 59.266 52.381 0.00 0.00 0.00 2.90
1746 1849 1.871408 CGCTTCTTCATCAGGATCGGG 60.871 57.143 0.00 0.00 0.00 5.14
1860 1963 2.282462 CACCTGCCCCTCACCAAC 60.282 66.667 0.00 0.00 0.00 3.77
1929 2032 1.027255 TCGACTGCGAGGAAGAGGAG 61.027 60.000 0.00 0.00 42.51 3.69
1935 2038 2.057408 CGAGGAAGAGGAGGCAGCT 61.057 63.158 0.00 0.00 0.00 4.24
1937 2040 2.124778 GGAAGAGGAGGCAGCTGC 60.125 66.667 30.88 30.88 41.14 5.25
1955 2058 3.644719 AGCAGATGAGGAGGCTGG 58.355 61.111 0.00 0.00 34.83 4.85
1958 2061 1.153208 CAGATGAGGAGGCTGGCAC 60.153 63.158 3.38 0.00 0.00 5.01
1983 2086 2.744202 CAGTGCCACTGGTCAGAATAAC 59.256 50.000 17.22 0.00 42.35 1.89
1995 2098 5.939883 TGGTCAGAATAACAAGGATGACAAG 59.060 40.000 5.60 0.00 38.99 3.16
1999 2102 8.567948 GTCAGAATAACAAGGATGACAAGAAAA 58.432 33.333 0.00 0.00 37.56 2.29
2007 2110 1.821136 GATGACAAGAAAAGCAGGGGG 59.179 52.381 0.00 0.00 0.00 5.40
2011 2114 0.113190 CAAGAAAAGCAGGGGGAGGT 59.887 55.000 0.00 0.00 0.00 3.85
2082 2185 3.304861 GCAAGTTTGTGATGATGCTGTCA 60.305 43.478 0.00 0.00 42.06 3.58
2207 2314 2.648059 AGTGTTTGAGAAGCTGCTTGT 58.352 42.857 21.25 16.67 0.00 3.16
2216 2323 1.949525 GAAGCTGCTTGTTCTGGACAA 59.050 47.619 21.25 0.86 45.70 3.18
2230 2337 8.718858 TGTTCTGGACAAGGATGATTGCATCT 62.719 42.308 0.00 0.00 41.93 2.90
2256 2363 2.679450 TGCAAAAGATGAACTGCATGC 58.321 42.857 11.82 11.82 39.77 4.06
2257 2364 1.652124 GCAAAAGATGAACTGCATGCG 59.348 47.619 14.09 10.50 37.34 4.73
2258 2365 1.652124 CAAAAGATGAACTGCATGCGC 59.348 47.619 14.09 0.00 37.34 6.09
2282 2392 6.381801 CAGGACAAAGCGAAAATATGTTCTT 58.618 36.000 4.13 0.00 27.30 2.52
2283 2393 7.526608 CAGGACAAAGCGAAAATATGTTCTTA 58.473 34.615 4.13 0.00 27.30 2.10
2392 2509 1.221414 GCAAGTGACTGTGACTGGTC 58.779 55.000 0.00 0.00 0.00 4.02
2397 2514 1.683917 GTGACTGTGACTGGTCTGAGT 59.316 52.381 9.67 4.11 34.01 3.41
2422 2539 7.272948 GTGAGAACAATTTTGCTGATGAATCTC 59.727 37.037 0.00 0.00 33.78 2.75
2438 2555 7.984050 TGATGAATCTCTAAAACCTGATGAGAC 59.016 37.037 0.00 0.00 36.74 3.36
2439 2556 7.244886 TGAATCTCTAAAACCTGATGAGACA 57.755 36.000 0.00 0.00 36.74 3.41
2441 2558 8.324306 TGAATCTCTAAAACCTGATGAGACATT 58.676 33.333 0.00 0.00 36.74 2.71
2443 2560 7.912056 TCTCTAAAACCTGATGAGACATTTG 57.088 36.000 0.00 0.00 0.00 2.32
2444 2561 7.679783 TCTCTAAAACCTGATGAGACATTTGA 58.320 34.615 0.00 0.00 0.00 2.69
2446 2563 5.972107 AAAACCTGATGAGACATTTGAGG 57.028 39.130 0.00 0.00 0.00 3.86
2447 2564 4.916041 AACCTGATGAGACATTTGAGGA 57.084 40.909 0.00 0.00 0.00 3.71
2505 2625 0.893270 TCCCGTTTCATGCACAAGGG 60.893 55.000 0.00 0.00 38.73 3.95
2524 2644 1.972660 GCAGAGCCTCCGGGTATGTT 61.973 60.000 0.00 0.00 43.30 2.71
2620 2740 5.010617 AGCCAAACGAAAATTAGTTCCATGT 59.989 36.000 0.00 0.00 0.00 3.21
2650 2770 2.626266 TCTTCGCCAACACTCTTAGACA 59.374 45.455 0.00 0.00 0.00 3.41
2658 2778 3.601443 ACACTCTTAGACATGTCCAGC 57.399 47.619 22.21 0.00 0.00 4.85
2662 2782 3.257393 CTCTTAGACATGTCCAGCACAC 58.743 50.000 22.21 0.00 38.04 3.82
2691 2822 1.661509 CGCGCACACTCAGACAGAA 60.662 57.895 8.75 0.00 0.00 3.02
2695 2826 2.932614 GCGCACACTCAGACAGAATAAT 59.067 45.455 0.30 0.00 0.00 1.28
2704 2835 5.296283 ACTCAGACAGAATAATGCAAGCATC 59.704 40.000 8.14 0.00 35.31 3.91
2737 2868 8.722480 TGAATATATCAAAATATCTGGGCGAG 57.278 34.615 0.00 0.00 34.30 5.03
2738 2869 7.280876 TGAATATATCAAAATATCTGGGCGAGC 59.719 37.037 0.00 0.00 34.30 5.03
2739 2870 1.581934 TCAAAATATCTGGGCGAGCG 58.418 50.000 0.00 0.00 0.00 5.03
2740 2871 1.138069 TCAAAATATCTGGGCGAGCGA 59.862 47.619 0.00 0.00 0.00 4.93
2741 2872 2.146342 CAAAATATCTGGGCGAGCGAT 58.854 47.619 0.00 0.00 0.00 4.58
2742 2873 1.800805 AAATATCTGGGCGAGCGATG 58.199 50.000 0.00 0.00 0.00 3.84
2743 2874 0.671781 AATATCTGGGCGAGCGATGC 60.672 55.000 0.00 0.00 0.00 3.91
2744 2875 1.539560 ATATCTGGGCGAGCGATGCT 61.540 55.000 0.00 0.00 43.88 3.79
2745 2876 0.893727 TATCTGGGCGAGCGATGCTA 60.894 55.000 0.00 0.00 39.88 3.49
2746 2877 1.539560 ATCTGGGCGAGCGATGCTAT 61.540 55.000 0.00 0.00 39.88 2.97
2747 2878 1.301244 CTGGGCGAGCGATGCTATT 60.301 57.895 0.00 0.00 39.88 1.73
2748 2879 0.882042 CTGGGCGAGCGATGCTATTT 60.882 55.000 0.00 0.00 39.88 1.40
2749 2880 0.463654 TGGGCGAGCGATGCTATTTT 60.464 50.000 0.00 0.00 39.88 1.82
2750 2881 0.235926 GGGCGAGCGATGCTATTTTC 59.764 55.000 0.00 0.00 39.88 2.29
2751 2882 1.221414 GGCGAGCGATGCTATTTTCT 58.779 50.000 0.00 0.00 39.88 2.52
2752 2883 1.070309 GGCGAGCGATGCTATTTTCTG 60.070 52.381 0.00 0.00 39.88 3.02
2753 2884 1.594862 GCGAGCGATGCTATTTTCTGT 59.405 47.619 0.00 0.00 39.88 3.41
2754 2885 2.794910 GCGAGCGATGCTATTTTCTGTA 59.205 45.455 0.00 0.00 39.88 2.74
2755 2886 3.245284 GCGAGCGATGCTATTTTCTGTAA 59.755 43.478 0.00 0.00 39.88 2.41
2756 2887 4.607114 GCGAGCGATGCTATTTTCTGTAAG 60.607 45.833 0.00 0.00 39.88 2.34
2757 2888 4.504461 CGAGCGATGCTATTTTCTGTAAGT 59.496 41.667 0.00 0.00 39.88 2.24
2758 2889 5.005779 CGAGCGATGCTATTTTCTGTAAGTT 59.994 40.000 0.00 0.00 39.88 2.66
2759 2890 6.455646 CGAGCGATGCTATTTTCTGTAAGTTT 60.456 38.462 0.00 0.00 39.88 2.66
2760 2891 7.253983 CGAGCGATGCTATTTTCTGTAAGTTTA 60.254 37.037 0.00 0.00 39.88 2.01
2761 2892 8.438676 AGCGATGCTATTTTCTGTAAGTTTAT 57.561 30.769 0.00 0.00 36.99 1.40
2762 2893 8.893727 AGCGATGCTATTTTCTGTAAGTTTATT 58.106 29.630 0.00 0.00 36.99 1.40
2763 2894 9.503427 GCGATGCTATTTTCTGTAAGTTTATTT 57.497 29.630 0.00 0.00 33.76 1.40
2767 2898 9.973450 TGCTATTTTCTGTAAGTTTATTTTGCA 57.027 25.926 0.00 0.00 33.76 4.08
2771 2902 8.865590 TTTTCTGTAAGTTTATTTTGCAGGTC 57.134 30.769 3.83 0.00 38.36 3.85
2772 2903 7.575414 TTCTGTAAGTTTATTTTGCAGGTCA 57.425 32.000 3.83 0.00 38.36 4.02
2773 2904 7.759489 TCTGTAAGTTTATTTTGCAGGTCAT 57.241 32.000 3.83 0.00 38.36 3.06
2774 2905 7.592938 TCTGTAAGTTTATTTTGCAGGTCATG 58.407 34.615 3.83 0.00 38.36 3.07
2775 2906 6.686630 TGTAAGTTTATTTTGCAGGTCATGG 58.313 36.000 0.00 0.00 0.00 3.66
2776 2907 4.192429 AGTTTATTTTGCAGGTCATGGC 57.808 40.909 0.00 0.00 0.00 4.40
2777 2908 3.577848 AGTTTATTTTGCAGGTCATGGCA 59.422 39.130 0.00 0.00 38.46 4.92
2778 2909 3.591196 TTATTTTGCAGGTCATGGCAC 57.409 42.857 0.00 0.00 40.23 5.01
2779 2910 1.636148 ATTTTGCAGGTCATGGCACT 58.364 45.000 0.00 0.00 40.23 4.40
2780 2911 2.284754 TTTTGCAGGTCATGGCACTA 57.715 45.000 0.00 0.00 40.23 2.74
2781 2912 1.825090 TTTGCAGGTCATGGCACTAG 58.175 50.000 0.00 0.00 40.23 2.57
2782 2913 0.983467 TTGCAGGTCATGGCACTAGA 59.017 50.000 0.00 0.00 40.23 2.43
2783 2914 1.206878 TGCAGGTCATGGCACTAGAT 58.793 50.000 0.00 0.00 34.58 1.98
2784 2915 1.134310 TGCAGGTCATGGCACTAGATG 60.134 52.381 0.00 0.00 34.58 2.90
2785 2916 1.134280 GCAGGTCATGGCACTAGATGT 60.134 52.381 0.00 0.00 0.00 3.06
2796 2927 3.703001 CACTAGATGTGTTGGTTCCCT 57.297 47.619 0.00 0.00 41.53 4.20
2797 2928 3.600388 CACTAGATGTGTTGGTTCCCTC 58.400 50.000 0.00 0.00 41.53 4.30
2798 2929 3.261897 CACTAGATGTGTTGGTTCCCTCT 59.738 47.826 0.00 0.00 41.53 3.69
2799 2930 2.867109 AGATGTGTTGGTTCCCTCTG 57.133 50.000 0.00 0.00 0.00 3.35
2800 2931 1.168714 GATGTGTTGGTTCCCTCTGC 58.831 55.000 0.00 0.00 0.00 4.26
2801 2932 0.478072 ATGTGTTGGTTCCCTCTGCA 59.522 50.000 0.00 0.00 0.00 4.41
2802 2933 0.179020 TGTGTTGGTTCCCTCTGCAG 60.179 55.000 7.63 7.63 0.00 4.41
2803 2934 0.179018 GTGTTGGTTCCCTCTGCAGT 60.179 55.000 14.67 0.00 0.00 4.40
2804 2935 0.550914 TGTTGGTTCCCTCTGCAGTT 59.449 50.000 14.67 0.00 0.00 3.16
2805 2936 1.064017 TGTTGGTTCCCTCTGCAGTTT 60.064 47.619 14.67 0.00 0.00 2.66
2806 2937 1.338020 GTTGGTTCCCTCTGCAGTTTG 59.662 52.381 14.67 5.43 0.00 2.93
2807 2938 0.843309 TGGTTCCCTCTGCAGTTTGA 59.157 50.000 14.67 5.69 0.00 2.69
2808 2939 1.214175 TGGTTCCCTCTGCAGTTTGAA 59.786 47.619 14.67 11.46 0.00 2.69
2809 2940 1.609072 GGTTCCCTCTGCAGTTTGAAC 59.391 52.381 24.02 24.02 33.20 3.18
2810 2941 2.297701 GTTCCCTCTGCAGTTTGAACA 58.702 47.619 25.64 4.93 33.93 3.18
2811 2942 1.967319 TCCCTCTGCAGTTTGAACAC 58.033 50.000 14.67 0.00 0.00 3.32
2812 2943 0.954452 CCCTCTGCAGTTTGAACACC 59.046 55.000 14.67 0.00 0.00 4.16
2813 2944 1.679139 CCTCTGCAGTTTGAACACCA 58.321 50.000 14.67 0.00 0.00 4.17
2814 2945 2.023673 CCTCTGCAGTTTGAACACCAA 58.976 47.619 14.67 0.00 0.00 3.67
2815 2946 2.426738 CCTCTGCAGTTTGAACACCAAA 59.573 45.455 14.67 0.00 42.07 3.28
2816 2947 3.119173 CCTCTGCAGTTTGAACACCAAAA 60.119 43.478 14.67 0.00 45.40 2.44
2817 2948 4.441913 CCTCTGCAGTTTGAACACCAAAAT 60.442 41.667 14.67 0.00 45.40 1.82
2826 2957 7.264947 AGTTTGAACACCAAAATGTCTAAAGG 58.735 34.615 0.00 0.00 45.40 3.11
2827 2958 5.195001 TGAACACCAAAATGTCTAAAGGC 57.805 39.130 0.00 0.00 30.55 4.35
2828 2959 4.646945 TGAACACCAAAATGTCTAAAGGCA 59.353 37.500 0.00 0.00 30.55 4.75
2829 2960 5.127845 TGAACACCAAAATGTCTAAAGGCAA 59.872 36.000 0.00 0.00 30.55 4.52
2830 2961 5.606348 ACACCAAAATGTCTAAAGGCAAA 57.394 34.783 0.00 0.00 0.00 3.68
2831 2962 6.173427 ACACCAAAATGTCTAAAGGCAAAT 57.827 33.333 0.00 0.00 0.00 2.32
2832 2963 5.990996 ACACCAAAATGTCTAAAGGCAAATG 59.009 36.000 0.00 0.00 0.00 2.32
2833 2964 4.996758 ACCAAAATGTCTAAAGGCAAATGC 59.003 37.500 0.00 0.00 41.14 3.56
2845 2976 2.514205 GCAAATGCCTTTGTGAGTGT 57.486 45.000 14.74 0.00 43.07 3.55
2846 2977 2.129607 GCAAATGCCTTTGTGAGTGTG 58.870 47.619 14.74 0.00 43.07 3.82
2847 2978 2.746269 CAAATGCCTTTGTGAGTGTGG 58.254 47.619 6.32 0.00 37.54 4.17
2848 2979 0.675633 AATGCCTTTGTGAGTGTGGC 59.324 50.000 0.00 0.00 43.49 5.01
2849 2980 1.518056 ATGCCTTTGTGAGTGTGGCG 61.518 55.000 0.00 0.00 45.90 5.69
2850 2981 2.639286 CCTTTGTGAGTGTGGCGC 59.361 61.111 0.00 0.00 0.00 6.53
2851 2982 2.186160 CCTTTGTGAGTGTGGCGCA 61.186 57.895 10.83 0.00 0.00 6.09
2852 2983 1.518056 CCTTTGTGAGTGTGGCGCAT 61.518 55.000 10.83 0.00 0.00 4.73
2853 2984 0.386352 CTTTGTGAGTGTGGCGCATG 60.386 55.000 10.83 0.00 0.00 4.06
2854 2985 1.100463 TTTGTGAGTGTGGCGCATGT 61.100 50.000 10.83 0.00 0.00 3.21
2855 2986 1.784036 TTGTGAGTGTGGCGCATGTG 61.784 55.000 10.83 0.66 0.00 3.21
2856 2987 2.110835 TGAGTGTGGCGCATGTGT 59.889 55.556 10.83 0.00 0.00 3.72
2857 2988 2.253051 TGAGTGTGGCGCATGTGTG 61.253 57.895 10.83 0.00 0.00 3.82
2873 3004 2.124529 TGCTTCCCACACGCACAA 60.125 55.556 0.00 0.00 0.00 3.33
2874 3005 1.750780 TGCTTCCCACACGCACAAA 60.751 52.632 0.00 0.00 0.00 2.83
2875 3006 1.315981 TGCTTCCCACACGCACAAAA 61.316 50.000 0.00 0.00 0.00 2.44
2876 3007 0.179124 GCTTCCCACACGCACAAAAA 60.179 50.000 0.00 0.00 0.00 1.94
2877 3008 1.537990 GCTTCCCACACGCACAAAAAT 60.538 47.619 0.00 0.00 0.00 1.82
2878 3009 2.287909 GCTTCCCACACGCACAAAAATA 60.288 45.455 0.00 0.00 0.00 1.40
2879 3010 3.305110 CTTCCCACACGCACAAAAATAC 58.695 45.455 0.00 0.00 0.00 1.89
2880 3011 2.577700 TCCCACACGCACAAAAATACT 58.422 42.857 0.00 0.00 0.00 2.12
2881 3012 3.741249 TCCCACACGCACAAAAATACTA 58.259 40.909 0.00 0.00 0.00 1.82
2882 3013 4.135306 TCCCACACGCACAAAAATACTAA 58.865 39.130 0.00 0.00 0.00 2.24
2883 3014 4.214545 TCCCACACGCACAAAAATACTAAG 59.785 41.667 0.00 0.00 0.00 2.18
2884 3015 3.911964 CCACACGCACAAAAATACTAAGC 59.088 43.478 0.00 0.00 0.00 3.09
2885 3016 4.320202 CCACACGCACAAAAATACTAAGCT 60.320 41.667 0.00 0.00 0.00 3.74
2886 3017 5.212194 CACACGCACAAAAATACTAAGCTT 58.788 37.500 3.48 3.48 0.00 3.74
2887 3018 5.685511 CACACGCACAAAAATACTAAGCTTT 59.314 36.000 3.20 0.00 0.00 3.51
2888 3019 5.912955 ACACGCACAAAAATACTAAGCTTTC 59.087 36.000 3.20 0.00 0.00 2.62
2889 3020 6.142817 CACGCACAAAAATACTAAGCTTTCT 58.857 36.000 3.20 0.00 0.00 2.52
2890 3021 7.041644 ACACGCACAAAAATACTAAGCTTTCTA 60.042 33.333 3.20 0.00 0.00 2.10
2891 3022 7.478667 CACGCACAAAAATACTAAGCTTTCTAG 59.521 37.037 3.20 0.00 0.00 2.43
2892 3023 7.386848 ACGCACAAAAATACTAAGCTTTCTAGA 59.613 33.333 3.20 0.00 0.00 2.43
2893 3024 8.391106 CGCACAAAAATACTAAGCTTTCTAGAT 58.609 33.333 3.20 0.00 0.00 1.98
2928 3059 7.994425 TTTTACATCCAAGAAATAGCAGTCA 57.006 32.000 0.00 0.00 0.00 3.41
2929 3060 6.985188 TTACATCCAAGAAATAGCAGTCAC 57.015 37.500 0.00 0.00 0.00 3.67
2930 3061 4.910195 ACATCCAAGAAATAGCAGTCACA 58.090 39.130 0.00 0.00 0.00 3.58
2931 3062 4.940046 ACATCCAAGAAATAGCAGTCACAG 59.060 41.667 0.00 0.00 0.00 3.66
2932 3063 3.338249 TCCAAGAAATAGCAGTCACAGC 58.662 45.455 0.00 0.00 0.00 4.40
2933 3064 3.076621 CCAAGAAATAGCAGTCACAGCA 58.923 45.455 0.00 0.00 0.00 4.41
2934 3065 3.503363 CCAAGAAATAGCAGTCACAGCAA 59.497 43.478 0.00 0.00 0.00 3.91
2935 3066 4.379186 CCAAGAAATAGCAGTCACAGCAAG 60.379 45.833 0.00 0.00 0.00 4.01
2936 3067 4.277515 AGAAATAGCAGTCACAGCAAGA 57.722 40.909 0.00 0.00 0.00 3.02
2937 3068 4.841422 AGAAATAGCAGTCACAGCAAGAT 58.159 39.130 0.00 0.00 0.00 2.40
2938 3069 5.982356 AGAAATAGCAGTCACAGCAAGATA 58.018 37.500 0.00 0.00 0.00 1.98
2939 3070 5.814705 AGAAATAGCAGTCACAGCAAGATAC 59.185 40.000 0.00 0.00 0.00 2.24
2940 3071 4.743057 ATAGCAGTCACAGCAAGATACA 57.257 40.909 0.00 0.00 0.00 2.29
2941 3072 3.407424 AGCAGTCACAGCAAGATACAA 57.593 42.857 0.00 0.00 0.00 2.41
2942 3073 3.070018 AGCAGTCACAGCAAGATACAAC 58.930 45.455 0.00 0.00 0.00 3.32
2943 3074 2.807967 GCAGTCACAGCAAGATACAACA 59.192 45.455 0.00 0.00 0.00 3.33
2944 3075 3.250762 GCAGTCACAGCAAGATACAACAA 59.749 43.478 0.00 0.00 0.00 2.83
2945 3076 4.776743 CAGTCACAGCAAGATACAACAAC 58.223 43.478 0.00 0.00 0.00 3.32
2946 3077 4.512944 CAGTCACAGCAAGATACAACAACT 59.487 41.667 0.00 0.00 0.00 3.16
2947 3078 5.696270 CAGTCACAGCAAGATACAACAACTA 59.304 40.000 0.00 0.00 0.00 2.24
2948 3079 6.369890 CAGTCACAGCAAGATACAACAACTAT 59.630 38.462 0.00 0.00 0.00 2.12
2949 3080 6.369890 AGTCACAGCAAGATACAACAACTATG 59.630 38.462 0.00 0.00 0.00 2.23
2950 3081 5.643348 TCACAGCAAGATACAACAACTATGG 59.357 40.000 0.00 0.00 0.00 2.74
2951 3082 4.943705 ACAGCAAGATACAACAACTATGGG 59.056 41.667 0.00 0.00 0.00 4.00
2952 3083 4.336433 CAGCAAGATACAACAACTATGGGG 59.664 45.833 0.00 0.00 0.00 4.96
2953 3084 4.018415 AGCAAGATACAACAACTATGGGGT 60.018 41.667 0.00 0.00 0.00 4.95
2954 3085 4.705023 GCAAGATACAACAACTATGGGGTT 59.295 41.667 0.00 0.00 0.00 4.11
2964 3095 5.818136 CAACTATGGGGTTGTAAGTCATG 57.182 43.478 0.00 0.00 40.92 3.07
2965 3096 5.496556 CAACTATGGGGTTGTAAGTCATGA 58.503 41.667 0.00 0.00 40.92 3.07
2966 3097 5.772393 ACTATGGGGTTGTAAGTCATGAA 57.228 39.130 0.00 0.00 0.00 2.57
2967 3098 5.745227 ACTATGGGGTTGTAAGTCATGAAG 58.255 41.667 0.00 0.00 0.00 3.02
2968 3099 4.657814 ATGGGGTTGTAAGTCATGAAGT 57.342 40.909 0.00 0.00 0.00 3.01
2969 3100 4.015872 TGGGGTTGTAAGTCATGAAGTC 57.984 45.455 0.00 0.00 0.00 3.01
2970 3101 3.392947 TGGGGTTGTAAGTCATGAAGTCA 59.607 43.478 0.00 0.00 0.00 3.41
2971 3102 4.042809 TGGGGTTGTAAGTCATGAAGTCAT 59.957 41.667 0.00 0.00 36.96 3.06
2972 3103 5.249622 TGGGGTTGTAAGTCATGAAGTCATA 59.750 40.000 0.00 0.00 34.26 2.15
2973 3104 6.069673 TGGGGTTGTAAGTCATGAAGTCATAT 60.070 38.462 0.00 0.00 34.26 1.78
2974 3105 6.260936 GGGGTTGTAAGTCATGAAGTCATATG 59.739 42.308 0.00 0.00 34.26 1.78
2975 3106 6.823689 GGGTTGTAAGTCATGAAGTCATATGT 59.176 38.462 0.00 0.00 34.26 2.29
2976 3107 7.985184 GGGTTGTAAGTCATGAAGTCATATGTA 59.015 37.037 0.00 0.00 34.26 2.29
2977 3108 9.547753 GGTTGTAAGTCATGAAGTCATATGTAT 57.452 33.333 0.00 0.00 34.26 2.29
2982 3113 7.488187 AGTCATGAAGTCATATGTATTGTGC 57.512 36.000 0.00 0.00 34.26 4.57
2983 3114 7.278135 AGTCATGAAGTCATATGTATTGTGCT 58.722 34.615 0.00 1.44 34.26 4.40
2984 3115 8.424133 AGTCATGAAGTCATATGTATTGTGCTA 58.576 33.333 0.00 0.00 34.26 3.49
2985 3116 9.045223 GTCATGAAGTCATATGTATTGTGCTAA 57.955 33.333 0.00 0.00 34.26 3.09
2986 3117 9.612066 TCATGAAGTCATATGTATTGTGCTAAA 57.388 29.630 1.90 0.00 34.26 1.85
2987 3118 9.655769 CATGAAGTCATATGTATTGTGCTAAAC 57.344 33.333 1.90 0.00 34.26 2.01
2988 3119 9.618890 ATGAAGTCATATGTATTGTGCTAAACT 57.381 29.630 1.90 0.00 34.26 2.66
2989 3120 8.882736 TGAAGTCATATGTATTGTGCTAAACTG 58.117 33.333 1.90 0.00 0.00 3.16
2990 3121 7.251704 AGTCATATGTATTGTGCTAAACTGC 57.748 36.000 1.90 0.00 0.00 4.40
2991 3122 7.050377 AGTCATATGTATTGTGCTAAACTGCT 58.950 34.615 1.90 0.00 0.00 4.24
2992 3123 8.204160 AGTCATATGTATTGTGCTAAACTGCTA 58.796 33.333 1.90 0.00 0.00 3.49
2993 3124 8.826710 GTCATATGTATTGTGCTAAACTGCTAA 58.173 33.333 1.90 0.00 0.00 3.09
2994 3125 9.559732 TCATATGTATTGTGCTAAACTGCTAAT 57.440 29.630 1.90 0.00 0.00 1.73
2995 3126 9.603298 CATATGTATTGTGCTAAACTGCTAATG 57.397 33.333 0.00 0.00 0.00 1.90
2996 3127 5.879237 TGTATTGTGCTAAACTGCTAATGC 58.121 37.500 0.00 0.00 40.20 3.56
2997 3128 5.647658 TGTATTGTGCTAAACTGCTAATGCT 59.352 36.000 0.00 0.00 40.48 3.79
2998 3129 5.649782 ATTGTGCTAAACTGCTAATGCTT 57.350 34.783 0.00 0.00 40.48 3.91
2999 3130 4.424061 TGTGCTAAACTGCTAATGCTTG 57.576 40.909 0.00 0.00 40.48 4.01
3000 3131 4.071423 TGTGCTAAACTGCTAATGCTTGA 58.929 39.130 0.00 0.00 40.48 3.02
3001 3132 4.701651 TGTGCTAAACTGCTAATGCTTGAT 59.298 37.500 0.00 0.00 40.48 2.57
3002 3133 5.183713 TGTGCTAAACTGCTAATGCTTGATT 59.816 36.000 0.00 0.00 40.48 2.57
3003 3134 5.741040 GTGCTAAACTGCTAATGCTTGATTC 59.259 40.000 0.00 0.00 40.48 2.52
3004 3135 5.163622 TGCTAAACTGCTAATGCTTGATTCC 60.164 40.000 0.00 0.00 40.48 3.01
3005 3136 5.067023 GCTAAACTGCTAATGCTTGATTCCT 59.933 40.000 0.00 0.00 40.48 3.36
3006 3137 5.990120 AAACTGCTAATGCTTGATTCCTT 57.010 34.783 0.00 0.00 40.48 3.36
3007 3138 4.978083 ACTGCTAATGCTTGATTCCTTG 57.022 40.909 0.00 0.00 40.48 3.61
3008 3139 3.129988 ACTGCTAATGCTTGATTCCTTGC 59.870 43.478 0.00 0.00 40.48 4.01
3009 3140 2.428171 TGCTAATGCTTGATTCCTTGCC 59.572 45.455 0.00 0.00 40.48 4.52
3010 3141 2.692041 GCTAATGCTTGATTCCTTGCCT 59.308 45.455 0.00 0.00 36.03 4.75
3011 3142 3.885297 GCTAATGCTTGATTCCTTGCCTA 59.115 43.478 0.00 0.00 36.03 3.93
3012 3143 4.023365 GCTAATGCTTGATTCCTTGCCTAG 60.023 45.833 0.00 0.00 36.03 3.02
3013 3144 3.659183 ATGCTTGATTCCTTGCCTAGT 57.341 42.857 0.00 0.00 0.00 2.57
3014 3145 3.439857 TGCTTGATTCCTTGCCTAGTT 57.560 42.857 0.00 0.00 0.00 2.24
3015 3146 3.084039 TGCTTGATTCCTTGCCTAGTTG 58.916 45.455 0.00 0.00 0.00 3.16
3016 3147 3.244875 TGCTTGATTCCTTGCCTAGTTGA 60.245 43.478 0.00 0.00 0.00 3.18
3017 3148 3.376546 GCTTGATTCCTTGCCTAGTTGAG 59.623 47.826 0.00 0.00 0.00 3.02
3018 3149 4.836825 CTTGATTCCTTGCCTAGTTGAGA 58.163 43.478 0.00 0.00 0.00 3.27
3019 3150 5.435291 CTTGATTCCTTGCCTAGTTGAGAT 58.565 41.667 0.00 0.00 0.00 2.75
3020 3151 4.774124 TGATTCCTTGCCTAGTTGAGATG 58.226 43.478 0.00 0.00 0.00 2.90
3021 3152 3.634397 TTCCTTGCCTAGTTGAGATGG 57.366 47.619 0.00 0.00 0.00 3.51
3022 3153 1.210478 TCCTTGCCTAGTTGAGATGGC 59.790 52.381 0.00 0.00 45.10 4.40
3023 3154 1.673168 CTTGCCTAGTTGAGATGGCC 58.327 55.000 0.00 0.00 44.32 5.36
3024 3155 0.107703 TTGCCTAGTTGAGATGGCCG 60.108 55.000 0.00 0.00 44.32 6.13
3025 3156 1.889573 GCCTAGTTGAGATGGCCGC 60.890 63.158 0.00 0.00 39.49 6.53
3026 3157 1.826024 CCTAGTTGAGATGGCCGCT 59.174 57.895 0.00 0.00 0.00 5.52
3027 3158 0.179000 CCTAGTTGAGATGGCCGCTT 59.821 55.000 0.00 0.00 0.00 4.68
3028 3159 1.412710 CCTAGTTGAGATGGCCGCTTA 59.587 52.381 0.00 0.00 0.00 3.09
3029 3160 2.546795 CCTAGTTGAGATGGCCGCTTAG 60.547 54.545 0.00 0.00 0.00 2.18
3030 3161 0.905357 AGTTGAGATGGCCGCTTAGT 59.095 50.000 0.00 0.00 0.00 2.24
3031 3162 1.279271 AGTTGAGATGGCCGCTTAGTT 59.721 47.619 0.00 0.00 0.00 2.24
3032 3163 1.398390 GTTGAGATGGCCGCTTAGTTG 59.602 52.381 0.00 0.00 0.00 3.16
3033 3164 0.901827 TGAGATGGCCGCTTAGTTGA 59.098 50.000 0.00 0.00 0.00 3.18
3034 3165 1.134699 TGAGATGGCCGCTTAGTTGAG 60.135 52.381 0.00 0.00 0.00 3.02
3035 3166 0.179000 AGATGGCCGCTTAGTTGAGG 59.821 55.000 0.00 0.00 0.00 3.86
3036 3167 0.107654 GATGGCCGCTTAGTTGAGGT 60.108 55.000 0.00 0.00 0.00 3.85
3037 3168 0.107654 ATGGCCGCTTAGTTGAGGTC 60.108 55.000 0.00 0.00 32.08 3.85
3038 3169 1.295423 GGCCGCTTAGTTGAGGTCA 59.705 57.895 0.00 0.00 31.76 4.02
3039 3170 0.321298 GGCCGCTTAGTTGAGGTCAA 60.321 55.000 0.00 0.00 31.76 3.18
3040 3171 1.519408 GCCGCTTAGTTGAGGTCAAA 58.481 50.000 0.00 0.00 37.63 2.69
3041 3172 1.877443 GCCGCTTAGTTGAGGTCAAAA 59.123 47.619 0.00 0.00 37.63 2.44
3042 3173 2.095718 GCCGCTTAGTTGAGGTCAAAAG 60.096 50.000 0.00 0.00 37.63 2.27
3043 3174 2.484264 CCGCTTAGTTGAGGTCAAAAGG 59.516 50.000 0.00 0.00 37.63 3.11
3044 3175 3.399330 CGCTTAGTTGAGGTCAAAAGGA 58.601 45.455 0.00 0.00 37.63 3.36
3045 3176 3.186613 CGCTTAGTTGAGGTCAAAAGGAC 59.813 47.826 0.00 0.00 46.20 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.769663 TCCATCCATTACGTAGCAAGGT 59.230 45.455 0.00 0.00 0.00 3.50
1 2 3.469008 TCCATCCATTACGTAGCAAGG 57.531 47.619 0.00 0.00 0.00 3.61
2 3 4.887748 AGATCCATCCATTACGTAGCAAG 58.112 43.478 0.00 0.00 0.00 4.01
3 4 4.955811 AGATCCATCCATTACGTAGCAA 57.044 40.909 0.00 0.00 0.00 3.91
4 5 4.955811 AAGATCCATCCATTACGTAGCA 57.044 40.909 0.00 0.00 0.00 3.49
5 6 6.369065 CCTAAAAGATCCATCCATTACGTAGC 59.631 42.308 0.00 0.00 0.00 3.58
6 7 7.667557 TCCTAAAAGATCCATCCATTACGTAG 58.332 38.462 0.00 0.00 0.00 3.51
7 8 7.606135 TCCTAAAAGATCCATCCATTACGTA 57.394 36.000 0.00 0.00 0.00 3.57
8 9 6.494666 TCCTAAAAGATCCATCCATTACGT 57.505 37.500 0.00 0.00 0.00 3.57
17 18 9.981460 AACTAAGAAACATCCTAAAAGATCCAT 57.019 29.630 0.00 0.00 0.00 3.41
40 41 7.690256 ACCCTCATAGTTTGACTTGAATAACT 58.310 34.615 0.00 0.00 35.25 2.24
77 83 3.953612 GGTGATATGCCAAACATTGAGGA 59.046 43.478 0.00 0.00 40.38 3.71
303 309 7.093465 ACCATACCCGTGATATATTACTTCAGG 60.093 40.741 6.13 4.38 0.00 3.86
305 311 7.786046 ACCATACCCGTGATATATTACTTCA 57.214 36.000 6.13 0.00 0.00 3.02
306 312 9.578439 GTTACCATACCCGTGATATATTACTTC 57.422 37.037 6.13 0.00 0.00 3.01
309 315 9.880157 AATGTTACCATACCCGTGATATATTAC 57.120 33.333 0.00 0.00 0.00 1.89
319 336 5.652891 TGCAAATAAATGTTACCATACCCGT 59.347 36.000 0.00 0.00 0.00 5.28
349 366 5.389935 GGTGATTAGCTGCTCATATTAACGC 60.390 44.000 4.91 0.00 0.00 4.84
351 368 8.091449 ACTAGGTGATTAGCTGCTCATATTAAC 58.909 37.037 4.91 0.00 35.90 2.01
358 375 5.363868 ACATTACTAGGTGATTAGCTGCTCA 59.636 40.000 4.91 0.00 35.90 4.26
359 376 5.848406 ACATTACTAGGTGATTAGCTGCTC 58.152 41.667 4.91 0.00 35.90 4.26
365 382 7.177041 GGAGGGAGTACATTACTAGGTGATTAG 59.823 44.444 0.00 0.00 39.59 1.73
372 389 3.830121 ACGGAGGGAGTACATTACTAGG 58.170 50.000 0.00 0.00 39.59 3.02
373 390 4.277921 GGAACGGAGGGAGTACATTACTAG 59.722 50.000 0.00 0.00 39.59 2.57
374 391 4.210331 GGAACGGAGGGAGTACATTACTA 58.790 47.826 0.00 0.00 39.59 1.82
392 409 8.287503 ACAAATACAAGACAAGTAATTCGGAAC 58.712 33.333 0.00 0.00 0.00 3.62
393 410 8.385898 ACAAATACAAGACAAGTAATTCGGAA 57.614 30.769 0.00 0.00 0.00 4.30
394 411 7.876068 AGACAAATACAAGACAAGTAATTCGGA 59.124 33.333 0.00 0.00 0.00 4.55
395 412 8.029642 AGACAAATACAAGACAAGTAATTCGG 57.970 34.615 0.00 0.00 0.00 4.30
401 418 9.999009 CGTATCTAGACAAATACAAGACAAGTA 57.001 33.333 0.00 0.00 0.00 2.24
402 419 7.974501 CCGTATCTAGACAAATACAAGACAAGT 59.025 37.037 0.00 0.00 0.00 3.16
403 420 8.188799 TCCGTATCTAGACAAATACAAGACAAG 58.811 37.037 0.00 0.00 0.00 3.16
404 421 8.058667 TCCGTATCTAGACAAATACAAGACAA 57.941 34.615 0.00 0.00 0.00 3.18
405 422 7.634671 TCCGTATCTAGACAAATACAAGACA 57.365 36.000 0.00 0.00 0.00 3.41
406 423 8.136165 ACATCCGTATCTAGACAAATACAAGAC 58.864 37.037 0.00 0.00 0.00 3.01
407 424 8.234136 ACATCCGTATCTAGACAAATACAAGA 57.766 34.615 0.00 0.00 0.00 3.02
424 441 9.570468 ACTAAAATGAGTCTAGATACATCCGTA 57.430 33.333 12.66 6.93 0.00 4.02
425 442 8.353684 CACTAAAATGAGTCTAGATACATCCGT 58.646 37.037 12.66 7.10 0.00 4.69
426 443 8.353684 ACACTAAAATGAGTCTAGATACATCCG 58.646 37.037 12.66 6.68 0.00 4.18
427 444 9.469807 CACACTAAAATGAGTCTAGATACATCC 57.530 37.037 12.66 0.00 0.00 3.51
433 450 9.427821 AGGTATCACACTAAAATGAGTCTAGAT 57.572 33.333 0.00 0.00 0.00 1.98
434 451 8.824756 AGGTATCACACTAAAATGAGTCTAGA 57.175 34.615 0.00 0.00 0.00 2.43
435 452 8.138712 GGAGGTATCACACTAAAATGAGTCTAG 58.861 40.741 0.00 0.00 0.00 2.43
436 453 7.201794 CGGAGGTATCACACTAAAATGAGTCTA 60.202 40.741 0.00 0.00 0.00 2.59
437 454 6.405953 CGGAGGTATCACACTAAAATGAGTCT 60.406 42.308 0.00 0.00 0.00 3.24
438 455 5.749109 CGGAGGTATCACACTAAAATGAGTC 59.251 44.000 0.00 0.00 0.00 3.36
439 456 5.187186 ACGGAGGTATCACACTAAAATGAGT 59.813 40.000 0.00 0.00 0.00 3.41
440 457 5.661458 ACGGAGGTATCACACTAAAATGAG 58.339 41.667 0.00 0.00 0.00 2.90
441 458 5.670792 ACGGAGGTATCACACTAAAATGA 57.329 39.130 0.00 0.00 0.00 2.57
459 476 6.127101 TGTCTTAGATTTCTCCAGATACGGA 58.873 40.000 0.00 0.00 0.00 4.69
460 477 6.392625 TGTCTTAGATTTCTCCAGATACGG 57.607 41.667 0.00 0.00 0.00 4.02
461 478 7.484975 ACTTGTCTTAGATTTCTCCAGATACG 58.515 38.462 0.00 0.00 0.00 3.06
465 482 9.877178 GAATTACTTGTCTTAGATTTCTCCAGA 57.123 33.333 0.00 0.00 0.00 3.86
466 483 8.812329 CGAATTACTTGTCTTAGATTTCTCCAG 58.188 37.037 0.00 0.00 0.00 3.86
467 484 7.764443 CCGAATTACTTGTCTTAGATTTCTCCA 59.236 37.037 0.00 0.00 0.00 3.86
468 485 7.980099 TCCGAATTACTTGTCTTAGATTTCTCC 59.020 37.037 0.00 0.00 0.00 3.71
469 486 8.928270 TCCGAATTACTTGTCTTAGATTTCTC 57.072 34.615 0.00 0.00 0.00 2.87
470 487 9.152595 GTTCCGAATTACTTGTCTTAGATTTCT 57.847 33.333 0.00 0.00 0.00 2.52
471 488 8.108782 CGTTCCGAATTACTTGTCTTAGATTTC 58.891 37.037 0.00 0.00 0.00 2.17
472 489 7.816031 TCGTTCCGAATTACTTGTCTTAGATTT 59.184 33.333 0.00 0.00 31.06 2.17
473 490 7.318141 TCGTTCCGAATTACTTGTCTTAGATT 58.682 34.615 0.00 0.00 31.06 2.40
474 491 6.860080 TCGTTCCGAATTACTTGTCTTAGAT 58.140 36.000 0.00 0.00 31.06 1.98
475 492 6.258230 TCGTTCCGAATTACTTGTCTTAGA 57.742 37.500 0.00 0.00 31.06 2.10
476 493 6.034683 CCTTCGTTCCGAATTACTTGTCTTAG 59.965 42.308 0.00 0.00 44.85 2.18
477 494 5.865552 CCTTCGTTCCGAATTACTTGTCTTA 59.134 40.000 0.00 0.00 44.85 2.10
478 495 4.689345 CCTTCGTTCCGAATTACTTGTCTT 59.311 41.667 0.00 0.00 44.85 3.01
479 496 4.021719 TCCTTCGTTCCGAATTACTTGTCT 60.022 41.667 0.00 0.00 44.85 3.41
480 497 4.240096 TCCTTCGTTCCGAATTACTTGTC 58.760 43.478 0.00 0.00 44.85 3.18
481 498 4.261578 TCCTTCGTTCCGAATTACTTGT 57.738 40.909 0.00 0.00 44.85 3.16
482 499 4.689345 ACTTCCTTCGTTCCGAATTACTTG 59.311 41.667 0.00 0.00 44.85 3.16
483 500 4.891260 ACTTCCTTCGTTCCGAATTACTT 58.109 39.130 0.00 0.00 44.85 2.24
484 501 4.532314 ACTTCCTTCGTTCCGAATTACT 57.468 40.909 0.00 0.00 44.85 2.24
485 502 5.405797 AGTACTTCCTTCGTTCCGAATTAC 58.594 41.667 0.00 0.00 44.85 1.89
486 503 5.649782 AGTACTTCCTTCGTTCCGAATTA 57.350 39.130 0.00 0.00 44.85 1.40
487 504 4.532314 AGTACTTCCTTCGTTCCGAATT 57.468 40.909 0.00 0.00 44.85 2.17
488 505 4.946157 TCTAGTACTTCCTTCGTTCCGAAT 59.054 41.667 0.00 0.00 44.85 3.34
489 506 4.326826 TCTAGTACTTCCTTCGTTCCGAA 58.673 43.478 0.00 0.00 43.75 4.30
490 507 3.942829 TCTAGTACTTCCTTCGTTCCGA 58.057 45.455 0.00 0.00 0.00 4.55
491 508 4.083110 TGTTCTAGTACTTCCTTCGTTCCG 60.083 45.833 0.00 0.00 0.00 4.30
492 509 5.382618 TGTTCTAGTACTTCCTTCGTTCC 57.617 43.478 0.00 0.00 0.00 3.62
493 510 6.854778 AGATGTTCTAGTACTTCCTTCGTTC 58.145 40.000 0.00 0.00 0.00 3.95
494 511 6.837471 AGATGTTCTAGTACTTCCTTCGTT 57.163 37.500 0.00 0.00 0.00 3.85
495 512 9.796180 ATATAGATGTTCTAGTACTTCCTTCGT 57.204 33.333 0.00 0.00 31.67 3.85
498 515 8.732531 GCGATATAGATGTTCTAGTACTTCCTT 58.267 37.037 0.00 3.56 31.67 3.36
499 516 7.064847 CGCGATATAGATGTTCTAGTACTTCCT 59.935 40.741 0.00 3.92 31.67 3.36
500 517 7.148440 ACGCGATATAGATGTTCTAGTACTTCC 60.148 40.741 15.93 0.00 31.67 3.46
501 518 7.741198 ACGCGATATAGATGTTCTAGTACTTC 58.259 38.462 15.93 7.15 31.67 3.01
502 519 7.670009 ACGCGATATAGATGTTCTAGTACTT 57.330 36.000 15.93 0.00 31.67 2.24
503 520 7.519843 CAACGCGATATAGATGTTCTAGTACT 58.480 38.462 15.93 0.00 31.67 2.73
504 521 6.248839 GCAACGCGATATAGATGTTCTAGTAC 59.751 42.308 15.93 0.00 31.67 2.73
519 536 1.425267 CCGTCCATTGCAACGCGATA 61.425 55.000 15.93 0.00 37.56 2.92
525 542 4.578928 AGATAATTACCCGTCCATTGCAAC 59.421 41.667 0.00 0.00 0.00 4.17
532 549 6.795144 TTTGACTAGATAATTACCCGTCCA 57.205 37.500 0.00 0.00 0.00 4.02
534 551 8.937634 TTCTTTTGACTAGATAATTACCCGTC 57.062 34.615 0.00 0.00 0.00 4.79
607 624 6.985653 TCCAGTTGGATTTTGGTTTCATTA 57.014 33.333 0.00 0.00 39.78 1.90
608 625 5.885449 TCCAGTTGGATTTTGGTTTCATT 57.115 34.783 0.00 0.00 39.78 2.57
626 643 8.578151 ACTAACTCAAAAGAGTTACTAGTCCAG 58.422 37.037 12.61 6.51 42.92 3.86
658 675 9.667107 GGATACATATATGCAAGGCTTAGTAAA 57.333 33.333 12.79 0.00 0.00 2.01
659 676 8.821817 TGGATACATATATGCAAGGCTTAGTAA 58.178 33.333 12.79 0.00 46.17 2.24
693 710 1.846439 CACCCCACCCTCTACATCATT 59.154 52.381 0.00 0.00 0.00 2.57
711 728 6.834168 TTTGGAAAATGGAGGATAGAACAC 57.166 37.500 0.00 0.00 0.00 3.32
713 730 9.803315 GTATTTTTGGAAAATGGAGGATAGAAC 57.197 33.333 8.48 0.00 0.00 3.01
721 738 7.930865 TCCAGTTTGTATTTTTGGAAAATGGAG 59.069 33.333 8.08 0.00 43.77 3.86
770 787 3.504520 TCTGATTTTCGGTACTTTTGGGC 59.495 43.478 0.00 0.00 0.00 5.36
779 836 2.358582 TCCGCGTATCTGATTTTCGGTA 59.641 45.455 4.92 7.53 36.99 4.02
782 839 4.915667 TCTTATCCGCGTATCTGATTTTCG 59.084 41.667 4.92 0.71 0.00 3.46
808 865 7.607250 TGTTGGTTCACAAGAAACTAAAACAT 58.393 30.769 0.00 0.00 42.10 2.71
820 887 4.869297 TGCTTCATTTTGTTGGTTCACAAG 59.131 37.500 0.00 0.00 40.38 3.16
826 893 3.132646 TCTGCTGCTTCATTTTGTTGGTT 59.867 39.130 0.00 0.00 0.00 3.67
828 895 3.374220 TCTGCTGCTTCATTTTGTTGG 57.626 42.857 0.00 0.00 0.00 3.77
889 956 4.040198 GGGGAAGGGAGGGGAGGT 62.040 72.222 0.00 0.00 0.00 3.85
898 965 0.392706 GTTTGTTTGCAGGGGAAGGG 59.607 55.000 0.00 0.00 0.00 3.95
901 968 1.561643 TGTGTTTGTTTGCAGGGGAA 58.438 45.000 0.00 0.00 0.00 3.97
902 969 1.411977 CATGTGTTTGTTTGCAGGGGA 59.588 47.619 0.00 0.00 0.00 4.81
950 1017 1.375326 GGTGGGTTCTGGGTGAGAC 59.625 63.158 0.00 0.00 0.00 3.36
984 1051 1.770658 TGCATCTGGAGGGGAATACAG 59.229 52.381 0.00 0.00 31.84 2.74
1065 1132 1.702886 CGTGGTCTACTGCTTGTCTG 58.297 55.000 0.00 0.00 0.00 3.51
1066 1133 0.038159 GCGTGGTCTACTGCTTGTCT 60.038 55.000 0.00 0.00 0.00 3.41
1067 1134 1.344942 CGCGTGGTCTACTGCTTGTC 61.345 60.000 0.00 0.00 0.00 3.18
1068 1135 1.372997 CGCGTGGTCTACTGCTTGT 60.373 57.895 0.00 0.00 0.00 3.16
1069 1136 2.730672 GCGCGTGGTCTACTGCTTG 61.731 63.158 8.43 0.00 0.00 4.01
1070 1137 2.432628 GCGCGTGGTCTACTGCTT 60.433 61.111 8.43 0.00 0.00 3.91
1071 1138 4.436998 GGCGCGTGGTCTACTGCT 62.437 66.667 8.43 0.00 0.00 4.24
1073 1140 4.063967 TGGGCGCGTGGTCTACTG 62.064 66.667 8.43 0.00 0.00 2.74
1201 1269 1.463018 AGGATGGATGGAGGGGAGC 60.463 63.158 0.00 0.00 0.00 4.70
1246 1319 0.461339 GAAGCATTTGCCATGGCTGG 60.461 55.000 35.53 22.32 46.17 4.85
1247 1320 0.461339 GGAAGCATTTGCCATGGCTG 60.461 55.000 35.53 26.29 43.38 4.85
1248 1321 1.619807 GGGAAGCATTTGCCATGGCT 61.620 55.000 35.53 15.41 43.74 4.75
1249 1322 1.153309 GGGAAGCATTTGCCATGGC 60.153 57.895 30.54 30.54 43.74 4.40
1399 1487 3.462678 GGTCACCGAGGAGGAGCC 61.463 72.222 0.00 0.00 45.00 4.70
1728 1831 2.484417 CCACCCGATCCTGATGAAGAAG 60.484 54.545 0.00 0.00 0.00 2.85
1739 1842 1.811941 GCTTCTTCATCCACCCGATCC 60.812 57.143 0.00 0.00 0.00 3.36
1746 1849 2.079925 GTGTCCAGCTTCTTCATCCAC 58.920 52.381 0.00 0.00 0.00 4.02
1878 1981 2.569404 GGTGAAGATGTTCTCCAGGAGT 59.431 50.000 16.65 0.00 43.27 3.85
1926 2029 3.700831 ATCTGCTGCAGCTGCCTCC 62.701 63.158 36.61 22.22 42.66 4.30
1929 2032 2.437895 TCATCTGCTGCAGCTGCC 60.438 61.111 36.61 21.13 42.66 4.85
1935 2038 1.993948 AGCCTCCTCATCTGCTGCA 60.994 57.895 0.88 0.88 31.70 4.41
1937 2040 4.859400 CAGCCTCCTCATCTGCTG 57.141 61.111 0.00 0.00 44.43 4.41
1983 2086 3.057033 CCCTGCTTTTCTTGTCATCCTTG 60.057 47.826 0.00 0.00 0.00 3.61
1995 2098 0.112412 TTGACCTCCCCCTGCTTTTC 59.888 55.000 0.00 0.00 0.00 2.29
1999 2102 1.151810 TCTTTGACCTCCCCCTGCT 60.152 57.895 0.00 0.00 0.00 4.24
2011 2114 6.460123 GGCTTGAAATCTGTCAAACTCTTTGA 60.460 38.462 0.00 0.00 46.68 2.69
2082 2185 4.906747 TTTTAAAATCAGCTGCCCCATT 57.093 36.364 9.47 0.01 0.00 3.16
2207 2314 3.438216 TGCAATCATCCTTGTCCAGAA 57.562 42.857 0.00 0.00 0.00 3.02
2230 2337 3.305539 GCAGTTCATCTTTTGCATGTCCA 60.306 43.478 0.00 0.00 36.59 4.02
2231 2338 3.248266 GCAGTTCATCTTTTGCATGTCC 58.752 45.455 0.00 0.00 36.59 4.02
2257 2364 4.096732 ACATATTTTCGCTTTGTCCTGC 57.903 40.909 0.00 0.00 0.00 4.85
2258 2365 5.942872 AGAACATATTTTCGCTTTGTCCTG 58.057 37.500 0.00 0.00 0.00 3.86
2259 2366 6.575162 AAGAACATATTTTCGCTTTGTCCT 57.425 33.333 0.00 0.00 0.00 3.85
2260 2367 7.044052 GCATAAGAACATATTTTCGCTTTGTCC 60.044 37.037 0.00 0.00 0.00 4.02
2261 2368 7.304849 CGCATAAGAACATATTTTCGCTTTGTC 60.305 37.037 0.00 0.00 0.00 3.18
2262 2369 6.468956 CGCATAAGAACATATTTTCGCTTTGT 59.531 34.615 0.00 0.00 0.00 2.83
2263 2370 6.686679 TCGCATAAGAACATATTTTCGCTTTG 59.313 34.615 0.00 0.00 0.00 2.77
2264 2371 6.781138 TCGCATAAGAACATATTTTCGCTTT 58.219 32.000 0.00 0.00 0.00 3.51
2392 2509 5.428496 TCAGCAAAATTGTTCTCACTCAG 57.572 39.130 0.00 0.00 0.00 3.35
2397 2514 7.176165 AGAGATTCATCAGCAAAATTGTTCTCA 59.824 33.333 0.00 0.00 0.00 3.27
2422 2539 6.881065 TCCTCAAATGTCTCATCAGGTTTTAG 59.119 38.462 0.00 0.00 0.00 1.85
2514 2634 1.299541 GCTCACATCAACATACCCGG 58.700 55.000 0.00 0.00 0.00 5.73
2620 2740 4.448210 AGTGTTGGCGAAGAGACTTAAAA 58.552 39.130 0.00 0.00 0.00 1.52
2633 2753 2.668457 GACATGTCTAAGAGTGTTGGCG 59.332 50.000 18.83 0.00 0.00 5.69
2650 2770 1.669115 GACTGCGTGTGCTGGACAT 60.669 57.895 5.02 0.00 43.66 3.06
2671 2799 4.583866 TGTCTGAGTGTGCGCGCA 62.584 61.111 33.09 33.09 0.00 6.09
2682 2810 5.187687 TGATGCTTGCATTATTCTGTCTGA 58.812 37.500 9.59 0.00 0.00 3.27
2685 2813 4.288531 GCTGATGCTTGCATTATTCTGTC 58.711 43.478 9.59 0.00 36.03 3.51
2717 2848 3.935203 CGCTCGCCCAGATATTTTGATAT 59.065 43.478 0.00 0.00 0.00 1.63
2721 2852 1.581934 TCGCTCGCCCAGATATTTTG 58.418 50.000 0.00 0.00 0.00 2.44
2722 2853 2.146342 CATCGCTCGCCCAGATATTTT 58.854 47.619 0.00 0.00 0.00 1.82
2723 2854 1.800805 CATCGCTCGCCCAGATATTT 58.199 50.000 0.00 0.00 0.00 1.40
2724 2855 0.671781 GCATCGCTCGCCCAGATATT 60.672 55.000 0.00 0.00 0.00 1.28
2725 2856 1.079543 GCATCGCTCGCCCAGATAT 60.080 57.895 0.00 0.00 0.00 1.63
2726 2857 0.893727 TAGCATCGCTCGCCCAGATA 60.894 55.000 0.00 0.00 40.44 1.98
2727 2858 1.539560 ATAGCATCGCTCGCCCAGAT 61.540 55.000 0.00 0.00 40.44 2.90
2728 2859 1.748329 AATAGCATCGCTCGCCCAGA 61.748 55.000 0.00 0.00 40.44 3.86
2729 2860 0.882042 AAATAGCATCGCTCGCCCAG 60.882 55.000 0.00 0.00 40.44 4.45
2730 2861 0.463654 AAAATAGCATCGCTCGCCCA 60.464 50.000 0.00 0.00 40.44 5.36
2731 2862 0.235926 GAAAATAGCATCGCTCGCCC 59.764 55.000 0.00 0.00 40.44 6.13
2732 2863 1.070309 CAGAAAATAGCATCGCTCGCC 60.070 52.381 0.00 0.00 40.44 5.54
2733 2864 1.594862 ACAGAAAATAGCATCGCTCGC 59.405 47.619 0.00 0.00 40.44 5.03
2734 2865 4.504461 ACTTACAGAAAATAGCATCGCTCG 59.496 41.667 0.00 0.00 40.44 5.03
2735 2866 5.975410 ACTTACAGAAAATAGCATCGCTC 57.025 39.130 0.00 0.00 40.44 5.03
2736 2867 6.743575 AAACTTACAGAAAATAGCATCGCT 57.256 33.333 0.00 0.00 43.41 4.93
2737 2868 9.503427 AAATAAACTTACAGAAAATAGCATCGC 57.497 29.630 0.00 0.00 0.00 4.58
2741 2872 9.973450 TGCAAAATAAACTTACAGAAAATAGCA 57.027 25.926 0.00 0.00 0.00 3.49
2745 2876 9.476202 GACCTGCAAAATAAACTTACAGAAAAT 57.524 29.630 0.00 0.00 0.00 1.82
2746 2877 8.470805 TGACCTGCAAAATAAACTTACAGAAAA 58.529 29.630 0.00 0.00 0.00 2.29
2747 2878 8.001881 TGACCTGCAAAATAAACTTACAGAAA 57.998 30.769 0.00 0.00 0.00 2.52
2748 2879 7.575414 TGACCTGCAAAATAAACTTACAGAA 57.425 32.000 0.00 0.00 0.00 3.02
2749 2880 7.309133 CCATGACCTGCAAAATAAACTTACAGA 60.309 37.037 0.00 0.00 0.00 3.41
2750 2881 6.808212 CCATGACCTGCAAAATAAACTTACAG 59.192 38.462 0.00 0.00 0.00 2.74
2751 2882 6.686630 CCATGACCTGCAAAATAAACTTACA 58.313 36.000 0.00 0.00 0.00 2.41
2752 2883 5.576774 GCCATGACCTGCAAAATAAACTTAC 59.423 40.000 0.00 0.00 0.00 2.34
2753 2884 5.244851 TGCCATGACCTGCAAAATAAACTTA 59.755 36.000 0.00 0.00 33.87 2.24
2754 2885 4.040217 TGCCATGACCTGCAAAATAAACTT 59.960 37.500 0.00 0.00 33.87 2.66
2755 2886 3.577848 TGCCATGACCTGCAAAATAAACT 59.422 39.130 0.00 0.00 33.87 2.66
2756 2887 3.679502 GTGCCATGACCTGCAAAATAAAC 59.320 43.478 0.00 0.00 39.57 2.01
2757 2888 3.577848 AGTGCCATGACCTGCAAAATAAA 59.422 39.130 0.00 0.00 39.57 1.40
2758 2889 3.164268 AGTGCCATGACCTGCAAAATAA 58.836 40.909 0.00 0.00 39.57 1.40
2759 2890 2.806434 AGTGCCATGACCTGCAAAATA 58.194 42.857 0.00 0.00 39.57 1.40
2760 2891 1.636148 AGTGCCATGACCTGCAAAAT 58.364 45.000 0.00 0.00 39.57 1.82
2761 2892 2.161855 CTAGTGCCATGACCTGCAAAA 58.838 47.619 0.00 0.00 39.57 2.44
2762 2893 1.350684 TCTAGTGCCATGACCTGCAAA 59.649 47.619 0.00 0.00 39.57 3.68
2763 2894 0.983467 TCTAGTGCCATGACCTGCAA 59.017 50.000 0.00 0.00 39.57 4.08
2764 2895 1.134310 CATCTAGTGCCATGACCTGCA 60.134 52.381 0.00 0.00 34.54 4.41
2765 2896 1.134280 ACATCTAGTGCCATGACCTGC 60.134 52.381 0.00 0.00 0.00 4.85
2766 2897 2.558378 CACATCTAGTGCCATGACCTG 58.442 52.381 0.00 0.00 42.15 4.00
2767 2898 2.996249 CACATCTAGTGCCATGACCT 57.004 50.000 0.00 0.00 42.15 3.85
2790 2921 2.033424 GTGTTCAAACTGCAGAGGGAAC 59.967 50.000 26.80 26.80 36.18 3.62
2791 2922 2.297701 GTGTTCAAACTGCAGAGGGAA 58.702 47.619 23.35 16.50 0.00 3.97
2792 2923 1.476833 GGTGTTCAAACTGCAGAGGGA 60.477 52.381 23.35 11.20 0.00 4.20
2793 2924 0.954452 GGTGTTCAAACTGCAGAGGG 59.046 55.000 23.35 8.83 0.00 4.30
2794 2925 1.679139 TGGTGTTCAAACTGCAGAGG 58.321 50.000 23.35 9.21 0.00 3.69
2795 2926 3.781079 TTTGGTGTTCAAACTGCAGAG 57.219 42.857 23.35 9.98 40.14 3.35
2796 2927 4.081752 ACATTTTGGTGTTCAAACTGCAGA 60.082 37.500 23.35 0.00 44.70 4.26
2797 2928 4.183101 ACATTTTGGTGTTCAAACTGCAG 58.817 39.130 13.48 13.48 44.70 4.41
2798 2929 4.081752 AGACATTTTGGTGTTCAAACTGCA 60.082 37.500 8.16 0.00 44.70 4.41
2799 2930 4.432712 AGACATTTTGGTGTTCAAACTGC 58.567 39.130 8.16 3.49 44.70 4.40
2800 2931 7.222611 CCTTTAGACATTTTGGTGTTCAAACTG 59.777 37.037 7.10 7.10 45.63 3.16
2801 2932 7.264947 CCTTTAGACATTTTGGTGTTCAAACT 58.735 34.615 0.00 0.00 44.20 2.66
2802 2933 6.019075 GCCTTTAGACATTTTGGTGTTCAAAC 60.019 38.462 0.00 0.00 44.20 2.93
2803 2934 6.045955 GCCTTTAGACATTTTGGTGTTCAAA 58.954 36.000 0.00 0.00 42.98 2.69
2804 2935 5.127845 TGCCTTTAGACATTTTGGTGTTCAA 59.872 36.000 0.00 0.00 31.16 2.69
2805 2936 4.646945 TGCCTTTAGACATTTTGGTGTTCA 59.353 37.500 0.00 0.00 31.16 3.18
2806 2937 5.195001 TGCCTTTAGACATTTTGGTGTTC 57.805 39.130 0.00 0.00 31.16 3.18
2807 2938 5.606348 TTGCCTTTAGACATTTTGGTGTT 57.394 34.783 0.00 0.00 31.16 3.32
2808 2939 5.606348 TTTGCCTTTAGACATTTTGGTGT 57.394 34.783 0.00 0.00 34.39 4.16
2809 2940 5.106987 GCATTTGCCTTTAGACATTTTGGTG 60.107 40.000 0.00 0.00 34.31 4.17
2810 2941 4.996758 GCATTTGCCTTTAGACATTTTGGT 59.003 37.500 0.00 0.00 34.31 3.67
2811 2942 5.535043 GCATTTGCCTTTAGACATTTTGG 57.465 39.130 0.00 0.00 34.31 3.28
2828 2959 1.069049 GCCACACTCACAAAGGCATTT 59.931 47.619 0.00 0.00 44.59 2.32
2829 2960 0.675633 GCCACACTCACAAAGGCATT 59.324 50.000 0.00 0.00 44.59 3.56
2830 2961 1.518056 CGCCACACTCACAAAGGCAT 61.518 55.000 0.00 0.00 45.47 4.40
2831 2962 2.186160 CGCCACACTCACAAAGGCA 61.186 57.895 0.00 0.00 45.47 4.75
2832 2963 2.639286 CGCCACACTCACAAAGGC 59.361 61.111 0.00 0.00 41.86 4.35
2833 2964 1.518056 ATGCGCCACACTCACAAAGG 61.518 55.000 4.18 0.00 0.00 3.11
2834 2965 0.386352 CATGCGCCACACTCACAAAG 60.386 55.000 4.18 0.00 0.00 2.77
2835 2966 1.100463 ACATGCGCCACACTCACAAA 61.100 50.000 4.18 0.00 0.00 2.83
2836 2967 1.525765 ACATGCGCCACACTCACAA 60.526 52.632 4.18 0.00 0.00 3.33
2837 2968 2.110835 ACATGCGCCACACTCACA 59.889 55.556 4.18 0.00 0.00 3.58
2838 2969 2.253758 ACACATGCGCCACACTCAC 61.254 57.895 4.18 0.00 0.00 3.51
2839 2970 2.110835 ACACATGCGCCACACTCA 59.889 55.556 4.18 0.00 0.00 3.41
2840 2971 2.557805 CACACATGCGCCACACTC 59.442 61.111 4.18 0.00 0.00 3.51
2841 2972 3.663176 GCACACATGCGCCACACT 61.663 61.111 4.18 0.00 43.33 3.55
2853 2984 2.899838 TGCGTGTGGGAAGCACAC 60.900 61.111 0.00 0.00 46.68 3.82
2856 2987 1.315981 TTTTGTGCGTGTGGGAAGCA 61.316 50.000 0.00 0.00 36.64 3.91
2857 2988 0.179124 TTTTTGTGCGTGTGGGAAGC 60.179 50.000 0.00 0.00 0.00 3.86
2858 2989 2.507339 ATTTTTGTGCGTGTGGGAAG 57.493 45.000 0.00 0.00 0.00 3.46
2859 2990 2.952978 AGTATTTTTGTGCGTGTGGGAA 59.047 40.909 0.00 0.00 0.00 3.97
2860 2991 2.577700 AGTATTTTTGTGCGTGTGGGA 58.422 42.857 0.00 0.00 0.00 4.37
2861 2992 4.472286 CTTAGTATTTTTGTGCGTGTGGG 58.528 43.478 0.00 0.00 0.00 4.61
2862 2993 3.911964 GCTTAGTATTTTTGTGCGTGTGG 59.088 43.478 0.00 0.00 0.00 4.17
2863 2994 4.783242 AGCTTAGTATTTTTGTGCGTGTG 58.217 39.130 0.00 0.00 0.00 3.82
2864 2995 5.432885 AAGCTTAGTATTTTTGTGCGTGT 57.567 34.783 0.00 0.00 0.00 4.49
2865 2996 6.142817 AGAAAGCTTAGTATTTTTGTGCGTG 58.857 36.000 0.00 0.00 0.00 5.34
2866 2997 6.313744 AGAAAGCTTAGTATTTTTGTGCGT 57.686 33.333 0.00 0.00 0.00 5.24
2867 2998 7.739295 TCTAGAAAGCTTAGTATTTTTGTGCG 58.261 34.615 0.00 0.00 0.00 5.34
2903 3034 8.296713 GTGACTGCTATTTCTTGGATGTAAAAA 58.703 33.333 0.00 0.00 0.00 1.94
2904 3035 7.446931 TGTGACTGCTATTTCTTGGATGTAAAA 59.553 33.333 0.00 0.00 0.00 1.52
2905 3036 6.939730 TGTGACTGCTATTTCTTGGATGTAAA 59.060 34.615 0.00 0.00 0.00 2.01
2906 3037 6.472016 TGTGACTGCTATTTCTTGGATGTAA 58.528 36.000 0.00 0.00 0.00 2.41
2907 3038 6.048732 TGTGACTGCTATTTCTTGGATGTA 57.951 37.500 0.00 0.00 0.00 2.29
2908 3039 4.910195 TGTGACTGCTATTTCTTGGATGT 58.090 39.130 0.00 0.00 0.00 3.06
2909 3040 4.201891 GCTGTGACTGCTATTTCTTGGATG 60.202 45.833 7.23 0.00 0.00 3.51
2910 3041 3.944015 GCTGTGACTGCTATTTCTTGGAT 59.056 43.478 7.23 0.00 0.00 3.41
2911 3042 3.244526 TGCTGTGACTGCTATTTCTTGGA 60.245 43.478 15.36 0.00 0.00 3.53
2912 3043 3.076621 TGCTGTGACTGCTATTTCTTGG 58.923 45.455 15.36 0.00 0.00 3.61
2913 3044 4.453478 TCTTGCTGTGACTGCTATTTCTTG 59.547 41.667 15.36 0.00 0.00 3.02
2914 3045 4.645535 TCTTGCTGTGACTGCTATTTCTT 58.354 39.130 15.36 0.00 0.00 2.52
2915 3046 4.277515 TCTTGCTGTGACTGCTATTTCT 57.722 40.909 15.36 0.00 0.00 2.52
2916 3047 5.582269 TGTATCTTGCTGTGACTGCTATTTC 59.418 40.000 15.36 3.39 0.00 2.17
2917 3048 5.491070 TGTATCTTGCTGTGACTGCTATTT 58.509 37.500 15.36 1.89 0.00 1.40
2918 3049 5.089970 TGTATCTTGCTGTGACTGCTATT 57.910 39.130 15.36 2.20 0.00 1.73
2919 3050 4.743057 TGTATCTTGCTGTGACTGCTAT 57.257 40.909 15.36 8.82 0.00 2.97
2920 3051 4.245660 GTTGTATCTTGCTGTGACTGCTA 58.754 43.478 15.36 7.19 0.00 3.49
2921 3052 3.070018 GTTGTATCTTGCTGTGACTGCT 58.930 45.455 15.36 0.00 0.00 4.24
2922 3053 2.807967 TGTTGTATCTTGCTGTGACTGC 59.192 45.455 7.56 7.56 0.00 4.40
2923 3054 4.512944 AGTTGTTGTATCTTGCTGTGACTG 59.487 41.667 0.00 0.00 0.00 3.51
2924 3055 4.708177 AGTTGTTGTATCTTGCTGTGACT 58.292 39.130 0.00 0.00 0.00 3.41
2925 3056 6.402550 CCATAGTTGTTGTATCTTGCTGTGAC 60.403 42.308 0.00 0.00 0.00 3.67
2926 3057 5.643348 CCATAGTTGTTGTATCTTGCTGTGA 59.357 40.000 0.00 0.00 0.00 3.58
2927 3058 5.163723 CCCATAGTTGTTGTATCTTGCTGTG 60.164 44.000 0.00 0.00 0.00 3.66
2928 3059 4.943705 CCCATAGTTGTTGTATCTTGCTGT 59.056 41.667 0.00 0.00 0.00 4.40
2929 3060 4.336433 CCCCATAGTTGTTGTATCTTGCTG 59.664 45.833 0.00 0.00 0.00 4.41
2930 3061 4.018415 ACCCCATAGTTGTTGTATCTTGCT 60.018 41.667 0.00 0.00 0.00 3.91
2931 3062 4.270008 ACCCCATAGTTGTTGTATCTTGC 58.730 43.478 0.00 0.00 0.00 4.01
2932 3063 6.194796 CAACCCCATAGTTGTTGTATCTTG 57.805 41.667 0.00 0.00 41.80 3.02
2943 3074 5.772393 TCATGACTTACAACCCCATAGTT 57.228 39.130 0.00 0.00 0.00 2.24
2944 3075 5.250774 ACTTCATGACTTACAACCCCATAGT 59.749 40.000 0.00 0.00 0.00 2.12
2945 3076 5.745227 ACTTCATGACTTACAACCCCATAG 58.255 41.667 0.00 0.00 0.00 2.23
2946 3077 5.249622 TGACTTCATGACTTACAACCCCATA 59.750 40.000 0.00 0.00 0.00 2.74
2947 3078 4.042809 TGACTTCATGACTTACAACCCCAT 59.957 41.667 0.00 0.00 0.00 4.00
2948 3079 3.392947 TGACTTCATGACTTACAACCCCA 59.607 43.478 0.00 0.00 0.00 4.96
2949 3080 4.015872 TGACTTCATGACTTACAACCCC 57.984 45.455 0.00 0.00 0.00 4.95
2950 3081 6.823689 ACATATGACTTCATGACTTACAACCC 59.176 38.462 10.38 0.00 37.15 4.11
2951 3082 7.849804 ACATATGACTTCATGACTTACAACC 57.150 36.000 10.38 0.00 37.15 3.77
2956 3087 9.045223 GCACAATACATATGACTTCATGACTTA 57.955 33.333 10.38 0.00 37.15 2.24
2957 3088 7.772292 AGCACAATACATATGACTTCATGACTT 59.228 33.333 10.38 0.00 37.15 3.01
2958 3089 7.278135 AGCACAATACATATGACTTCATGACT 58.722 34.615 10.38 0.69 37.15 3.41
2959 3090 7.488187 AGCACAATACATATGACTTCATGAC 57.512 36.000 10.38 0.00 37.15 3.06
2960 3091 9.612066 TTTAGCACAATACATATGACTTCATGA 57.388 29.630 10.38 0.00 37.15 3.07
2961 3092 9.655769 GTTTAGCACAATACATATGACTTCATG 57.344 33.333 10.38 1.88 37.15 3.07
2962 3093 9.618890 AGTTTAGCACAATACATATGACTTCAT 57.381 29.630 10.38 0.00 40.22 2.57
2963 3094 8.882736 CAGTTTAGCACAATACATATGACTTCA 58.117 33.333 10.38 0.00 0.00 3.02
2964 3095 7.852945 GCAGTTTAGCACAATACATATGACTTC 59.147 37.037 10.38 0.00 0.00 3.01
2965 3096 7.554118 AGCAGTTTAGCACAATACATATGACTT 59.446 33.333 10.38 0.00 36.85 3.01
2966 3097 7.050377 AGCAGTTTAGCACAATACATATGACT 58.950 34.615 10.38 0.00 36.85 3.41
2967 3098 7.251704 AGCAGTTTAGCACAATACATATGAC 57.748 36.000 10.38 0.00 36.85 3.06
2968 3099 8.956533 TTAGCAGTTTAGCACAATACATATGA 57.043 30.769 10.38 0.00 36.85 2.15
2969 3100 9.603298 CATTAGCAGTTTAGCACAATACATATG 57.397 33.333 0.00 0.00 36.85 1.78
2970 3101 8.292448 GCATTAGCAGTTTAGCACAATACATAT 58.708 33.333 0.00 0.00 41.58 1.78
2971 3102 7.498900 AGCATTAGCAGTTTAGCACAATACATA 59.501 33.333 0.00 0.00 45.49 2.29
2972 3103 6.319658 AGCATTAGCAGTTTAGCACAATACAT 59.680 34.615 0.00 0.00 45.49 2.29
2973 3104 5.647658 AGCATTAGCAGTTTAGCACAATACA 59.352 36.000 0.00 0.00 45.49 2.29
2974 3105 6.124088 AGCATTAGCAGTTTAGCACAATAC 57.876 37.500 0.00 0.00 45.49 1.89
2975 3106 6.374053 TCAAGCATTAGCAGTTTAGCACAATA 59.626 34.615 0.00 0.00 45.49 1.90
2976 3107 5.183713 TCAAGCATTAGCAGTTTAGCACAAT 59.816 36.000 0.00 0.00 45.49 2.71
2977 3108 4.518590 TCAAGCATTAGCAGTTTAGCACAA 59.481 37.500 0.00 0.00 45.49 3.33
2978 3109 4.071423 TCAAGCATTAGCAGTTTAGCACA 58.929 39.130 0.00 0.00 45.49 4.57
2979 3110 4.685169 TCAAGCATTAGCAGTTTAGCAC 57.315 40.909 0.00 0.00 45.49 4.40
2980 3111 5.163622 GGAATCAAGCATTAGCAGTTTAGCA 60.164 40.000 0.00 0.00 45.49 3.49
2981 3112 5.067023 AGGAATCAAGCATTAGCAGTTTAGC 59.933 40.000 0.00 0.00 45.49 3.09
2982 3113 6.690194 AGGAATCAAGCATTAGCAGTTTAG 57.310 37.500 0.00 0.00 45.49 1.85
2983 3114 6.625740 GCAAGGAATCAAGCATTAGCAGTTTA 60.626 38.462 0.00 0.00 45.49 2.01
2984 3115 5.717119 CAAGGAATCAAGCATTAGCAGTTT 58.283 37.500 0.00 0.00 45.49 2.66
2985 3116 4.381292 GCAAGGAATCAAGCATTAGCAGTT 60.381 41.667 0.00 0.00 45.49 3.16
2986 3117 3.129988 GCAAGGAATCAAGCATTAGCAGT 59.870 43.478 0.00 0.00 45.49 4.40
2987 3118 3.490419 GGCAAGGAATCAAGCATTAGCAG 60.490 47.826 0.00 0.00 45.49 4.24
2988 3119 2.428171 GGCAAGGAATCAAGCATTAGCA 59.572 45.455 0.00 0.00 45.49 3.49
2989 3120 2.692041 AGGCAAGGAATCAAGCATTAGC 59.308 45.455 0.00 0.00 42.56 3.09
2990 3121 5.128919 ACTAGGCAAGGAATCAAGCATTAG 58.871 41.667 0.00 0.00 0.00 1.73
2991 3122 5.116084 ACTAGGCAAGGAATCAAGCATTA 57.884 39.130 0.00 0.00 0.00 1.90
2992 3123 3.973425 ACTAGGCAAGGAATCAAGCATT 58.027 40.909 0.00 0.00 0.00 3.56
2993 3124 3.659183 ACTAGGCAAGGAATCAAGCAT 57.341 42.857 0.00 0.00 0.00 3.79
2994 3125 3.084039 CAACTAGGCAAGGAATCAAGCA 58.916 45.455 0.00 0.00 0.00 3.91
2995 3126 3.347216 TCAACTAGGCAAGGAATCAAGC 58.653 45.455 0.00 0.00 0.00 4.01
2996 3127 4.836825 TCTCAACTAGGCAAGGAATCAAG 58.163 43.478 0.00 0.00 0.00 3.02
2997 3128 4.908601 TCTCAACTAGGCAAGGAATCAA 57.091 40.909 0.00 0.00 0.00 2.57
2998 3129 4.384537 CCATCTCAACTAGGCAAGGAATCA 60.385 45.833 0.00 0.00 0.00 2.57
2999 3130 4.133078 CCATCTCAACTAGGCAAGGAATC 58.867 47.826 0.00 0.00 0.00 2.52
3000 3131 3.686691 GCCATCTCAACTAGGCAAGGAAT 60.687 47.826 0.00 0.00 46.26 3.01
3001 3132 2.356125 GCCATCTCAACTAGGCAAGGAA 60.356 50.000 0.00 0.00 46.26 3.36
3002 3133 1.210478 GCCATCTCAACTAGGCAAGGA 59.790 52.381 0.00 0.00 46.26 3.36
3003 3134 1.673168 GCCATCTCAACTAGGCAAGG 58.327 55.000 0.00 0.00 46.26 3.61
3007 3138 1.889573 GCGGCCATCTCAACTAGGC 60.890 63.158 2.24 0.00 46.28 3.93
3008 3139 0.179000 AAGCGGCCATCTCAACTAGG 59.821 55.000 2.24 0.00 0.00 3.02
3009 3140 2.101582 ACTAAGCGGCCATCTCAACTAG 59.898 50.000 2.24 0.52 0.00 2.57
3010 3141 2.108168 ACTAAGCGGCCATCTCAACTA 58.892 47.619 2.24 0.00 0.00 2.24
3011 3142 0.905357 ACTAAGCGGCCATCTCAACT 59.095 50.000 2.24 0.00 0.00 3.16
3012 3143 1.398390 CAACTAAGCGGCCATCTCAAC 59.602 52.381 2.24 0.00 0.00 3.18
3013 3144 1.277842 TCAACTAAGCGGCCATCTCAA 59.722 47.619 2.24 0.00 0.00 3.02
3014 3145 0.901827 TCAACTAAGCGGCCATCTCA 59.098 50.000 2.24 0.00 0.00 3.27
3015 3146 1.576356 CTCAACTAAGCGGCCATCTC 58.424 55.000 2.24 0.00 0.00 2.75
3016 3147 0.179000 CCTCAACTAAGCGGCCATCT 59.821 55.000 2.24 0.00 0.00 2.90
3017 3148 0.107654 ACCTCAACTAAGCGGCCATC 60.108 55.000 2.24 0.00 0.00 3.51
3018 3149 0.107654 GACCTCAACTAAGCGGCCAT 60.108 55.000 2.24 0.00 0.00 4.40
3019 3150 1.295423 GACCTCAACTAAGCGGCCA 59.705 57.895 2.24 0.00 0.00 5.36
3020 3151 0.321298 TTGACCTCAACTAAGCGGCC 60.321 55.000 0.00 0.00 0.00 6.13
3021 3152 1.519408 TTTGACCTCAACTAAGCGGC 58.481 50.000 0.00 0.00 35.28 6.53
3022 3153 2.484264 CCTTTTGACCTCAACTAAGCGG 59.516 50.000 0.00 0.00 35.28 5.52
3023 3154 3.186613 GTCCTTTTGACCTCAACTAAGCG 59.813 47.826 0.00 0.00 38.09 4.68
3024 3155 4.134563 TGTCCTTTTGACCTCAACTAAGC 58.865 43.478 0.00 0.00 43.78 3.09
3025 3156 5.239525 CCTTGTCCTTTTGACCTCAACTAAG 59.760 44.000 0.00 0.00 43.78 2.18
3026 3157 5.104277 TCCTTGTCCTTTTGACCTCAACTAA 60.104 40.000 0.00 0.00 43.78 2.24
3027 3158 4.410883 TCCTTGTCCTTTTGACCTCAACTA 59.589 41.667 0.00 0.00 43.78 2.24
3028 3159 3.202151 TCCTTGTCCTTTTGACCTCAACT 59.798 43.478 0.00 0.00 43.78 3.16
3029 3160 3.551846 TCCTTGTCCTTTTGACCTCAAC 58.448 45.455 0.00 0.00 43.78 3.18
3030 3161 3.943671 TCCTTGTCCTTTTGACCTCAA 57.056 42.857 0.00 0.00 43.78 3.02
3031 3162 3.943671 TTCCTTGTCCTTTTGACCTCA 57.056 42.857 0.00 0.00 43.78 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.