Multiple sequence alignment - TraesCS4A01G232300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G232300 chr4A 100.000 3867 0 0 1 3867 541893848 541889982 0.000000e+00 7142.0
1 TraesCS4A01G232300 chr4D 87.630 2013 162 27 1886 3864 55280306 55282265 0.000000e+00 2257.0
2 TraesCS4A01G232300 chr4D 92.596 1148 49 7 757 1877 55279130 55280268 0.000000e+00 1616.0
3 TraesCS4A01G232300 chr4D 82.147 773 90 28 3 758 55278344 55279085 1.530000e-173 619.0
4 TraesCS4A01G232300 chr4B 92.857 1344 61 16 1639 2955 82281168 82282503 0.000000e+00 1917.0
5 TraesCS4A01G232300 chr4B 93.687 887 47 4 757 1642 82280261 82281139 0.000000e+00 1319.0
6 TraesCS4A01G232300 chr4B 84.794 776 82 20 3 759 82279460 82280218 0.000000e+00 747.0
7 TraesCS4A01G232300 chr3B 94.203 276 16 0 1164 1439 106658628 106658903 4.620000e-114 422.0
8 TraesCS4A01G232300 chr2B 95.531 179 8 0 1306 1484 140222347 140222525 1.760000e-73 287.0
9 TraesCS4A01G232300 chr2B 97.101 69 2 0 1214 1282 140222282 140222350 2.440000e-22 117.0
10 TraesCS4A01G232300 chr1B 92.179 179 14 0 1306 1484 229995496 229995318 1.780000e-63 254.0
11 TraesCS4A01G232300 chr1B 97.101 69 2 0 1214 1282 229995561 229995493 2.440000e-22 117.0
12 TraesCS4A01G232300 chr2A 93.333 45 3 0 2301 2345 137485739 137485695 2.490000e-07 67.6
13 TraesCS4A01G232300 chr6D 97.059 34 1 0 501 534 415405227 415405260 1.500000e-04 58.4
14 TraesCS4A01G232300 chr6D 97.059 34 1 0 501 534 416432377 416432410 1.500000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G232300 chr4A 541889982 541893848 3866 True 7142.000000 7142 100.000000 1 3867 1 chr4A.!!$R1 3866
1 TraesCS4A01G232300 chr4D 55278344 55282265 3921 False 1497.333333 2257 87.457667 3 3864 3 chr4D.!!$F1 3861
2 TraesCS4A01G232300 chr4B 82279460 82282503 3043 False 1327.666667 1917 90.446000 3 2955 3 chr4B.!!$F1 2952

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
819 908 0.035458 AAGAGGACAAGGAAGCCACG 59.965 55.0 0.0 0.0 0.0 4.94 F
2185 2336 0.036022 GCCATGGAGATCAGGTAGCC 59.964 60.0 18.4 0.0 0.0 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2453 2604 0.251916 TGATTCGCGGAGGTTGGAAT 59.748 50.0 6.13 0.0 32.15 3.01 R
3260 3450 0.036306 ACACCGTTTCCCCTCATGAC 59.964 55.0 0.00 0.0 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
161 166 8.774890 TCATGTATTTGAAAACATTTCCCATG 57.225 30.769 0.00 0.00 34.12 3.66
481 513 9.357652 TCCGAATTCAAAGAATTTTCATGATTC 57.642 29.630 6.22 0.00 35.03 2.52
609 645 5.955488 TCTTCACCAAACGAAAATGTTTCA 58.045 33.333 0.00 0.00 39.94 2.69
610 646 6.390721 TCTTCACCAAACGAAAATGTTTCAA 58.609 32.000 0.00 0.00 39.94 2.69
615 651 8.507249 TCACCAAACGAAAATGTTTCAAATTTT 58.493 25.926 0.00 0.00 39.94 1.82
616 652 8.573801 CACCAAACGAAAATGTTTCAAATTTTG 58.426 29.630 2.59 2.59 39.94 2.44
650 687 9.701098 TTCCTGAATTTGAAAATGAAAGATGAG 57.299 29.630 0.00 0.00 0.00 2.90
726 764 5.186942 GTTTGGAAAGGATCTAGAACCTCC 58.813 45.833 20.87 18.34 35.25 4.30
739 779 3.367321 AGAACCTCCAAAACCGGAAAAA 58.633 40.909 9.46 0.00 33.65 1.94
770 856 2.602676 GCTGTCCCCAACCTAGGCA 61.603 63.158 9.30 0.00 0.00 4.75
773 859 1.198759 TGTCCCCAACCTAGGCACTC 61.199 60.000 9.30 0.00 41.75 3.51
775 861 1.198759 TCCCCAACCTAGGCACTCAC 61.199 60.000 9.30 0.00 41.75 3.51
819 908 0.035458 AAGAGGACAAGGAAGCCACG 59.965 55.000 0.00 0.00 0.00 4.94
827 916 0.039035 AAGGAAGCCACGCCCAAATA 59.961 50.000 0.00 0.00 0.00 1.40
830 919 0.179174 GAAGCCACGCCCAAATAACG 60.179 55.000 0.00 0.00 0.00 3.18
891 980 6.714356 GGAAACCAAAATCCAAATCCAAATGA 59.286 34.615 0.00 0.00 35.71 2.57
900 989 3.554752 CCAAATCCAAATGACACCACCAC 60.555 47.826 0.00 0.00 0.00 4.16
903 992 1.146774 TCCAAATGACACCACCACCAT 59.853 47.619 0.00 0.00 0.00 3.55
904 993 1.545582 CCAAATGACACCACCACCATC 59.454 52.381 0.00 0.00 0.00 3.51
905 994 2.237643 CAAATGACACCACCACCATCA 58.762 47.619 0.00 0.00 0.00 3.07
909 998 0.744414 GACACCACCACCATCATCCG 60.744 60.000 0.00 0.00 0.00 4.18
938 1027 2.030562 CACCTCCACACACGGGAC 59.969 66.667 0.00 0.00 0.00 4.46
1101 1190 2.824041 CCGCGGCAATGCTACCTT 60.824 61.111 14.67 0.00 0.00 3.50
1104 1193 0.529773 CGCGGCAATGCTACCTTCTA 60.530 55.000 4.82 0.00 0.00 2.10
1108 1197 2.679639 CGGCAATGCTACCTTCTACCAA 60.680 50.000 4.82 0.00 0.00 3.67
1109 1198 3.352648 GGCAATGCTACCTTCTACCAAA 58.647 45.455 4.82 0.00 0.00 3.28
1301 1390 2.669240 CTTCCTCCGGTTCCCCAC 59.331 66.667 0.00 0.00 0.00 4.61
1692 1815 3.114616 CTGTCGACCAAGCTGGCG 61.115 66.667 14.12 0.00 42.67 5.69
1858 1981 1.552337 ACAACATGTGAGCTCCTCGAT 59.448 47.619 12.15 0.00 32.35 3.59
1877 2000 3.243569 CGATGGTCACCTCCTCTGTAATC 60.244 52.174 0.00 0.00 0.00 1.75
1879 2002 3.724478 TGGTCACCTCCTCTGTAATCAT 58.276 45.455 0.00 0.00 0.00 2.45
1881 2004 3.706594 GGTCACCTCCTCTGTAATCATCA 59.293 47.826 0.00 0.00 0.00 3.07
1883 2006 5.355596 GTCACCTCCTCTGTAATCATCAAG 58.644 45.833 0.00 0.00 0.00 3.02
1884 2007 5.127845 GTCACCTCCTCTGTAATCATCAAGA 59.872 44.000 0.00 0.00 0.00 3.02
1886 2009 6.047870 CACCTCCTCTGTAATCATCAAGAAG 58.952 44.000 0.00 0.00 0.00 2.85
1904 2055 6.485313 TCAAGAAGGAATTCTAAAAGACGCAA 59.515 34.615 5.23 0.00 0.00 4.85
1949 2100 3.736224 ATGCTGGAGTGGCTGGGG 61.736 66.667 0.00 0.00 0.00 4.96
2093 2244 2.417719 GTCATCCACGGCATAGAATCC 58.582 52.381 0.00 0.00 0.00 3.01
2153 2304 1.758906 CCTCCTCCCCCTCGAACTC 60.759 68.421 0.00 0.00 0.00 3.01
2185 2336 0.036022 GCCATGGAGATCAGGTAGCC 59.964 60.000 18.40 0.00 0.00 3.93
2209 2360 1.601759 GCCTCTGCACTTGCTTGGA 60.602 57.895 2.33 0.00 42.66 3.53
2210 2361 0.964358 GCCTCTGCACTTGCTTGGAT 60.964 55.000 2.33 0.00 42.66 3.41
2217 2368 2.294233 TGCACTTGCTTGGATTCAACTC 59.706 45.455 2.33 0.00 42.66 3.01
2252 2403 1.306642 CGTCGTAGCAGTCCTGACCT 61.307 60.000 0.00 0.00 0.00 3.85
2255 2406 0.171455 CGTAGCAGTCCTGACCTGAC 59.829 60.000 0.00 0.00 0.00 3.51
2267 2418 2.584673 ACCTGACCGGTGATCTCTG 58.415 57.895 14.63 0.12 46.80 3.35
2268 2419 0.251832 ACCTGACCGGTGATCTCTGT 60.252 55.000 14.63 0.00 46.80 3.41
2269 2420 0.457851 CCTGACCGGTGATCTCTGTC 59.542 60.000 14.63 0.00 0.00 3.51
2270 2421 1.468985 CTGACCGGTGATCTCTGTCT 58.531 55.000 14.63 0.00 0.00 3.41
2275 2426 0.247460 CGGTGATCTCTGTCTTGGCA 59.753 55.000 0.00 0.00 0.00 4.92
2277 2428 2.559440 GGTGATCTCTGTCTTGGCATC 58.441 52.381 0.00 0.00 0.00 3.91
2337 2488 0.737219 GATGCCACATGAGAAGCACC 59.263 55.000 0.00 0.00 38.21 5.01
2355 2506 1.175983 CCGGGAAGAGATCGAGGAGG 61.176 65.000 0.00 0.00 0.00 4.30
2429 2580 4.759183 GGTTATCATTCATCCTCCTGCTTC 59.241 45.833 0.00 0.00 0.00 3.86
2446 2597 3.015327 GCTTCTGCTTGATCAGAACCAT 58.985 45.455 0.00 0.00 45.21 3.55
2453 2604 7.795047 TCTGCTTGATCAGAACCATAAATCTA 58.205 34.615 0.00 0.00 39.89 1.98
2456 2607 9.060347 TGCTTGATCAGAACCATAAATCTATTC 57.940 33.333 0.00 0.00 0.00 1.75
2472 2623 0.251916 ATTCCAACCTCCGCGAATCA 59.748 50.000 8.23 0.00 0.00 2.57
2479 2630 1.138859 ACCTCCGCGAATCAATCATCA 59.861 47.619 8.23 0.00 0.00 3.07
2507 2662 6.455647 TGACACTCTGTTTTCTACGATCATT 58.544 36.000 0.00 0.00 0.00 2.57
2508 2663 6.586463 TGACACTCTGTTTTCTACGATCATTC 59.414 38.462 0.00 0.00 0.00 2.67
2509 2664 6.455647 ACACTCTGTTTTCTACGATCATTCA 58.544 36.000 0.00 0.00 0.00 2.57
2510 2665 6.366332 ACACTCTGTTTTCTACGATCATTCAC 59.634 38.462 0.00 0.00 0.00 3.18
2516 2671 1.954382 TCTACGATCATTCACTCCCCG 59.046 52.381 0.00 0.00 0.00 5.73
2610 2765 0.744414 CCGTGACAAGCCATGGTAGG 60.744 60.000 14.67 5.36 38.19 3.18
2631 2786 4.020128 AGGGTAGACTCACAAGATTGTTCC 60.020 45.833 0.00 0.00 39.91 3.62
2646 2801 5.591877 AGATTGTTCCTGCAGAATATGAACC 59.408 40.000 22.18 12.05 36.69 3.62
2761 2923 1.446966 GAGGAAGAGCTGCACCGTC 60.447 63.158 1.02 0.96 0.00 4.79
2787 2949 4.704833 GGCGACAGGCAAGCTGGA 62.705 66.667 0.00 0.00 46.16 3.86
2818 2980 2.436824 GAGGCGGTGAAGAAGGCC 60.437 66.667 0.00 0.00 45.91 5.19
2851 3013 4.933064 CCCGCTCCTAGCTTCGCG 62.933 72.222 0.00 0.00 44.69 5.87
2857 3019 3.195698 CCTAGCTTCGCGTTGGCC 61.196 66.667 5.77 0.00 35.02 5.36
2869 3031 1.470805 GCGTTGGCCCAAACATAATCC 60.471 52.381 0.00 0.00 0.00 3.01
2885 3048 1.656652 ATCCAAAGCATCGTCTTCGG 58.343 50.000 0.00 0.00 37.69 4.30
2950 3113 2.702592 TGTGACCAAGAGTTCGGTTT 57.297 45.000 0.00 0.00 34.99 3.27
2973 3136 7.478520 TTTCTTGTAGTTACTTCAGTTCAGC 57.521 36.000 0.00 0.00 0.00 4.26
2974 3137 6.156748 TCTTGTAGTTACTTCAGTTCAGCA 57.843 37.500 0.00 0.00 0.00 4.41
2975 3138 6.216569 TCTTGTAGTTACTTCAGTTCAGCAG 58.783 40.000 0.00 0.00 0.00 4.24
2976 3139 5.784578 TGTAGTTACTTCAGTTCAGCAGA 57.215 39.130 0.00 0.00 0.00 4.26
2977 3140 5.529791 TGTAGTTACTTCAGTTCAGCAGAC 58.470 41.667 0.00 0.00 0.00 3.51
3032 3202 7.412563 CCGCGATTGTAAATTTGACTTCTCTAA 60.413 37.037 8.23 0.00 0.00 2.10
3044 3214 9.793259 ATTTGACTTCTCTAAATAAGTGGTCAA 57.207 29.630 0.00 0.00 36.10 3.18
3057 3227 8.433421 AATAAGTGGTCAATCTAAATGTACGG 57.567 34.615 0.00 0.00 0.00 4.02
3067 3237 4.813027 TCTAAATGTACGGGACAGTTCAC 58.187 43.478 9.62 0.00 42.55 3.18
3079 3261 3.684788 GGACAGTTCACGCAACAGATAAT 59.315 43.478 1.06 0.00 37.48 1.28
3086 3268 3.120234 TCACGCAACAGATAATGCACAAG 60.120 43.478 0.00 0.00 42.68 3.16
3087 3269 2.179589 CGCAACAGATAATGCACAAGC 58.820 47.619 0.00 0.00 42.68 4.01
3092 3274 4.870123 ACAGATAATGCACAAGCCAAAA 57.130 36.364 0.00 0.00 41.13 2.44
3110 3292 5.812652 CCAAAATACATGGCAAAATGATGC 58.187 37.500 0.00 0.00 45.67 3.91
3117 3299 6.902088 ACATGGCAAAATGATGCAAGGTGG 62.902 45.833 0.00 0.00 42.28 4.61
3118 3300 2.460757 GCAAAATGATGCAAGGTGGT 57.539 45.000 0.00 0.00 45.70 4.16
3123 3305 0.994247 ATGATGCAAGGTGGTGAGGA 59.006 50.000 0.00 0.00 0.00 3.71
3139 3321 0.544595 AGGAAGCCCTCTTACACGGT 60.545 55.000 0.00 0.00 38.86 4.83
3144 3326 2.748388 AGCCCTCTTACACGGTAGATT 58.252 47.619 0.00 0.00 0.00 2.40
3146 3328 2.223994 GCCCTCTTACACGGTAGATTCC 60.224 54.545 0.00 0.00 0.00 3.01
3172 3354 2.017049 AGCCGGACAATCTAAATGCAC 58.983 47.619 5.05 0.00 0.00 4.57
3173 3355 1.742831 GCCGGACAATCTAAATGCACA 59.257 47.619 5.05 0.00 0.00 4.57
3174 3356 2.358898 GCCGGACAATCTAAATGCACAT 59.641 45.455 5.05 0.00 0.00 3.21
3177 3359 4.276678 CCGGACAATCTAAATGCACATGAT 59.723 41.667 0.00 0.00 0.00 2.45
3181 3363 6.852853 GGACAATCTAAATGCACATGATTACG 59.147 38.462 0.00 0.00 0.00 3.18
3187 3369 1.528129 TGCACATGATTACGTTGCCA 58.472 45.000 0.00 0.00 0.00 4.92
3198 3380 9.169468 CATGATTACGTTGCCAAAAGATAATAC 57.831 33.333 0.00 0.00 0.00 1.89
3200 3382 8.898761 TGATTACGTTGCCAAAAGATAATACAT 58.101 29.630 0.00 0.00 0.00 2.29
3224 3414 4.866508 AGGTCTGAATACAACGTCAAGA 57.133 40.909 0.00 0.00 0.00 3.02
3228 3418 4.150098 GTCTGAATACAACGTCAAGACACC 59.850 45.833 0.72 0.00 0.00 4.16
3229 3419 3.395639 TGAATACAACGTCAAGACACCC 58.604 45.455 0.72 0.00 0.00 4.61
3239 3429 2.505819 GTCAAGACACCCCATAGGACAT 59.494 50.000 0.00 0.00 39.89 3.06
3240 3430 3.709653 GTCAAGACACCCCATAGGACATA 59.290 47.826 0.00 0.00 39.89 2.29
3242 3432 5.542635 GTCAAGACACCCCATAGGACATATA 59.457 44.000 0.00 0.00 39.89 0.86
3250 3440 5.309806 ACCCCATAGGACATATAAGTTCCAC 59.690 44.000 0.00 0.00 39.89 4.02
3254 3444 4.303086 AGGACATATAAGTTCCACGACG 57.697 45.455 0.00 0.00 0.00 5.12
3259 3449 3.797145 TATAAGTTCCACGACGGCGCC 62.797 57.143 19.07 19.07 42.48 6.53
3276 3466 1.449601 CCGTCATGAGGGGAAACGG 60.450 63.158 24.05 14.93 45.79 4.44
3277 3467 1.295423 CGTCATGAGGGGAAACGGT 59.705 57.895 7.54 0.00 0.00 4.83
3278 3468 1.019278 CGTCATGAGGGGAAACGGTG 61.019 60.000 7.54 0.00 0.00 4.94
3281 3471 0.881118 CATGAGGGGAAACGGTGTTG 59.119 55.000 0.00 0.00 0.00 3.33
3284 3474 4.337060 GGGGAAACGGTGTTGCGC 62.337 66.667 0.00 0.00 0.00 6.09
3287 3477 2.424640 GAAACGGTGTTGCGCGTC 60.425 61.111 8.43 0.00 0.00 5.19
3304 3494 2.855187 GCGTCGCCACTATTGAGTCTAG 60.855 54.545 5.75 0.00 31.73 2.43
3307 3497 2.950309 TCGCCACTATTGAGTCTAGGAC 59.050 50.000 0.00 0.00 31.73 3.85
3314 3504 6.264744 CCACTATTGAGTCTAGGACGGATAAA 59.735 42.308 0.00 0.00 37.67 1.40
3318 3508 5.831702 TGAGTCTAGGACGGATAAAAGTC 57.168 43.478 0.00 0.00 37.67 3.01
3320 3510 5.589452 TGAGTCTAGGACGGATAAAAGTCTC 59.411 44.000 0.00 0.00 37.67 3.36
3322 3512 4.643784 GTCTAGGACGGATAAAAGTCTCCA 59.356 45.833 0.00 0.00 37.52 3.86
3335 3525 6.426646 AAAAGTCTCCATCTAGAACACTGT 57.573 37.500 0.00 0.00 0.00 3.55
3338 3528 4.461081 AGTCTCCATCTAGAACACTGTCAC 59.539 45.833 0.00 0.00 0.00 3.67
3347 3537 2.294791 AGAACACTGTCACGGAGAGAAG 59.705 50.000 0.00 0.00 0.00 2.85
3362 3552 5.305585 GGAGAGAAGAACCACAACAACATA 58.694 41.667 0.00 0.00 0.00 2.29
3365 3555 5.760253 AGAGAAGAACCACAACAACATACTG 59.240 40.000 0.00 0.00 0.00 2.74
3367 3557 5.760253 AGAAGAACCACAACAACATACTGAG 59.240 40.000 0.00 0.00 0.00 3.35
3371 3561 2.736721 CCACAACAACATACTGAGGACG 59.263 50.000 0.00 0.00 0.00 4.79
3373 3563 3.675225 CACAACAACATACTGAGGACGAG 59.325 47.826 0.00 0.00 0.00 4.18
3383 3573 2.597805 AGGACGAGCACGACACCT 60.598 61.111 11.40 12.43 42.66 4.00
3384 3574 1.303074 AGGACGAGCACGACACCTA 60.303 57.895 11.40 0.00 42.66 3.08
3390 3580 0.173481 GAGCACGACACCTATGAGCA 59.827 55.000 0.00 0.00 0.00 4.26
3416 3606 1.569493 CGTCGACACCAAAGCCTTG 59.431 57.895 17.16 0.00 0.00 3.61
3460 3650 2.440147 CCACCAGGATGCACCCAA 59.560 61.111 0.00 0.00 40.05 4.12
3461 3651 1.679977 CCACCAGGATGCACCCAAG 60.680 63.158 0.00 0.00 40.05 3.61
3469 3659 3.210012 ATGCACCCAAGACCGCCTT 62.210 57.895 0.00 0.00 34.91 4.35
3478 3668 1.166531 AAGACCGCCTTGACAAGCAC 61.167 55.000 9.85 3.26 32.92 4.40
3485 3675 0.963962 CCTTGACAAGCACAAGCCAT 59.036 50.000 9.85 0.00 42.03 4.40
3491 3681 2.490903 GACAAGCACAAGCCATCAGATT 59.509 45.455 0.00 0.00 43.56 2.40
3492 3682 2.895404 ACAAGCACAAGCCATCAGATTT 59.105 40.909 0.00 0.00 43.56 2.17
3510 3700 4.469227 AGATTTAGATCTGGGCGATGCTAT 59.531 41.667 5.18 0.00 41.09 2.97
3517 3707 1.227556 GGGCGATGCTATTGTCCGT 60.228 57.895 0.00 0.00 0.00 4.69
3543 3733 3.605749 AATGTGCCCGAGTCACCCG 62.606 63.158 0.00 0.00 33.71 5.28
3561 3751 3.449227 CCGCTACACCTCTCGCCA 61.449 66.667 0.00 0.00 0.00 5.69
3562 3752 2.786495 CCGCTACACCTCTCGCCAT 61.786 63.158 0.00 0.00 0.00 4.40
3572 3762 0.103937 CTCTCGCCATCCAGAAGACC 59.896 60.000 0.00 0.00 0.00 3.85
3576 3766 0.036010 CGCCATCCAGAAGACCAAGT 60.036 55.000 0.00 0.00 0.00 3.16
3600 3790 3.443045 GGCAACACCTCCGCCATG 61.443 66.667 0.00 0.00 45.52 3.66
3601 3791 2.359850 GCAACACCTCCGCCATGA 60.360 61.111 0.00 0.00 0.00 3.07
3602 3792 1.750399 GCAACACCTCCGCCATGAT 60.750 57.895 0.00 0.00 0.00 2.45
3603 3793 1.996786 GCAACACCTCCGCCATGATG 61.997 60.000 0.00 0.00 0.00 3.07
3604 3794 1.750399 AACACCTCCGCCATGATGC 60.750 57.895 0.00 0.00 0.00 3.91
3617 3807 3.859414 GATGCCCGCTGGAGAGCT 61.859 66.667 0.00 0.00 43.77 4.09
3623 3813 0.179000 CCCGCTGGAGAGCTAAACAT 59.821 55.000 0.00 0.00 43.77 2.71
3632 3822 3.539604 GAGAGCTAAACATGCAGACCAT 58.460 45.455 0.00 0.00 33.39 3.55
3637 3827 3.881688 GCTAAACATGCAGACCATCATCT 59.118 43.478 0.00 0.00 29.71 2.90
3675 3865 2.361610 CATGCCCCCAGACACCAC 60.362 66.667 0.00 0.00 0.00 4.16
3705 3895 4.572571 TCACGGCCACCCAACCAC 62.573 66.667 2.24 0.00 0.00 4.16
3707 3897 4.130554 ACGGCCACCCAACCACAA 62.131 61.111 2.24 0.00 0.00 3.33
3718 3908 1.212935 CCAACCACAATAGGAGGAGGG 59.787 57.143 0.00 0.00 31.87 4.30
3744 3934 2.502130 GCACCTCCTTTACTCTTAGCCT 59.498 50.000 0.00 0.00 0.00 4.58
3745 3935 3.680196 GCACCTCCTTTACTCTTAGCCTG 60.680 52.174 0.00 0.00 0.00 4.85
3752 3942 5.127845 TCCTTTACTCTTAGCCTGACATCAG 59.872 44.000 1.63 1.63 43.40 2.90
3755 3945 1.483827 CTCTTAGCCTGACATCAGCCA 59.516 52.381 3.18 0.00 42.47 4.75
3765 3955 2.035626 ATCAGCCACCGGGTTTGG 59.964 61.111 6.32 5.67 37.17 3.28
3767 3957 4.596585 CAGCCACCGGGTTTGGGT 62.597 66.667 6.32 7.55 45.95 4.51
3774 3964 4.636435 CGGGTTTGGGTCGGTGCT 62.636 66.667 0.00 0.00 0.00 4.40
3776 3966 2.265904 GGGTTTGGGTCGGTGCTTC 61.266 63.158 0.00 0.00 0.00 3.86
3809 3999 3.470888 CCACACCCGCCTCCCTAG 61.471 72.222 0.00 0.00 0.00 3.02
3819 4009 2.840102 CTCCCTAGCCTGTCCCGG 60.840 72.222 0.00 0.00 0.00 5.73
3854 4044 0.603569 CAACCTAGTGACTGCCGACT 59.396 55.000 0.00 0.00 0.00 4.18
3864 4054 2.986979 TGCCGACTGTCGCTACCA 60.987 61.111 23.87 14.15 38.82 3.25
3865 4055 2.260434 GCCGACTGTCGCTACCAA 59.740 61.111 23.87 0.00 38.82 3.67
3866 4056 1.805945 GCCGACTGTCGCTACCAAG 60.806 63.158 23.87 9.98 38.82 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.494893 TGATGAACAACTTTTAAGATCCGG 57.505 37.500 0.00 0.00 0.00 5.14
1 2 8.970691 AATTGATGAACAACTTTTAAGATCCG 57.029 30.769 0.00 0.00 41.52 4.18
86 87 8.056710 ACAATTCACGAACTTTTTAAAATCCG 57.943 30.769 0.55 5.98 0.00 4.18
262 267 6.683715 TCAAATTTTTGAACTCCGGGAATAC 58.316 36.000 0.00 0.00 43.62 1.89
432 463 9.158364 CGGAACATTTATCTAAATTCGTGATTG 57.842 33.333 0.00 0.00 33.88 2.67
471 503 8.308931 CCAGGAGAAATTTTCAGAATCATGAAA 58.691 33.333 11.53 0.00 45.12 2.69
491 523 7.023575 CGTGAACAATTTCTAAAATCCAGGAG 58.976 38.462 0.00 0.00 32.36 3.69
641 678 9.985318 CAGTGTCATTTTTATCTCTCATCTTTC 57.015 33.333 0.00 0.00 0.00 2.62
684 722 8.294954 TCCAAACCAGTTTTTCTGTTATTACA 57.705 30.769 0.00 0.00 42.19 2.41
686 724 9.810545 CTTTCCAAACCAGTTTTTCTGTTATTA 57.189 29.630 0.00 0.00 42.19 0.98
687 725 7.768582 CCTTTCCAAACCAGTTTTTCTGTTATT 59.231 33.333 0.00 0.00 42.19 1.40
688 726 7.125053 TCCTTTCCAAACCAGTTTTTCTGTTAT 59.875 33.333 0.00 0.00 42.19 1.89
689 727 6.437793 TCCTTTCCAAACCAGTTTTTCTGTTA 59.562 34.615 0.00 0.00 42.19 2.41
690 728 5.247337 TCCTTTCCAAACCAGTTTTTCTGTT 59.753 36.000 0.00 0.00 42.19 3.16
691 729 4.775253 TCCTTTCCAAACCAGTTTTTCTGT 59.225 37.500 0.00 0.00 42.19 3.41
703 741 5.186942 GGAGGTTCTAGATCCTTTCCAAAC 58.813 45.833 20.96 8.40 33.83 2.93
705 743 4.435137 TGGAGGTTCTAGATCCTTTCCAA 58.565 43.478 20.96 9.00 33.83 3.53
726 764 5.509716 ACTAGTTCCTTTTTCCGGTTTTG 57.490 39.130 0.00 0.00 0.00 2.44
739 779 0.984995 GGACAGCCCAACTAGTTCCT 59.015 55.000 4.77 0.00 34.14 3.36
770 856 1.457831 GGGGCCGATCCTAGTGAGT 60.458 63.158 0.00 0.00 34.39 3.41
773 859 0.254747 TTTTGGGGCCGATCCTAGTG 59.745 55.000 0.00 0.00 34.39 2.74
775 861 1.340600 TGTTTTTGGGGCCGATCCTAG 60.341 52.381 0.00 0.00 34.39 3.02
819 908 1.680735 TGATGATGGCGTTATTTGGGC 59.319 47.619 0.00 0.00 0.00 5.36
827 916 1.422781 AGATGGGATGATGATGGCGTT 59.577 47.619 0.00 0.00 0.00 4.84
830 919 1.634459 AGGAGATGGGATGATGATGGC 59.366 52.381 0.00 0.00 0.00 4.40
891 980 1.299648 CGGATGATGGTGGTGGTGT 59.700 57.895 0.00 0.00 0.00 4.16
900 989 0.831288 AGGAGGAGAGCGGATGATGG 60.831 60.000 0.00 0.00 0.00 3.51
903 992 1.152652 GGAGGAGGAGAGCGGATGA 60.153 63.158 0.00 0.00 0.00 2.92
904 993 1.456518 TGGAGGAGGAGAGCGGATG 60.457 63.158 0.00 0.00 0.00 3.51
905 994 1.456705 GTGGAGGAGGAGAGCGGAT 60.457 63.158 0.00 0.00 0.00 4.18
909 998 1.760480 GGAGGTGGAGGAGGAGAGC 60.760 68.421 0.00 0.00 0.00 4.09
953 1042 3.561310 GCGATGAGTTGCTTTGGATATCA 59.439 43.478 4.83 0.00 0.00 2.15
996 1085 2.322355 TGGTTGGTGTTTGCATTTGG 57.678 45.000 0.00 0.00 0.00 3.28
1083 1172 4.856801 AGGTAGCATTGCCGCGGG 62.857 66.667 29.38 11.47 36.85 6.13
1101 1190 4.397832 GCCCGGCGGTTTGGTAGA 62.398 66.667 26.32 0.00 0.00 2.59
1150 1239 2.746277 CGGGTTCCGCTTCTTGGG 60.746 66.667 0.00 0.00 41.17 4.12
1301 1390 4.910585 GCTCCGGCATGTACCCCG 62.911 72.222 0.00 9.09 43.97 5.73
1601 1690 1.124462 CTCGAATCGATGAGCCGAAC 58.876 55.000 5.59 0.00 42.22 3.95
1779 1902 3.649277 CTCGGTGAGGAACAGCCCG 62.649 68.421 0.00 0.00 43.16 6.13
1858 1981 3.184382 TGATTACAGAGGAGGTGACCA 57.816 47.619 3.63 0.00 0.00 4.02
1877 2000 6.963805 GCGTCTTTTAGAATTCCTTCTTGATG 59.036 38.462 0.65 1.55 41.91 3.07
1879 2002 5.995282 TGCGTCTTTTAGAATTCCTTCTTGA 59.005 36.000 0.65 0.00 41.91 3.02
1881 2004 6.877611 TTGCGTCTTTTAGAATTCCTTCTT 57.122 33.333 0.65 0.00 41.91 2.52
1883 2006 6.030228 CCATTGCGTCTTTTAGAATTCCTTC 58.970 40.000 0.65 0.00 0.00 3.46
1884 2007 5.710099 TCCATTGCGTCTTTTAGAATTCCTT 59.290 36.000 0.65 0.00 0.00 3.36
1886 2009 5.560966 TCCATTGCGTCTTTTAGAATTCC 57.439 39.130 0.65 0.00 0.00 3.01
1904 2055 2.496899 ACCTGATCAAGCGTTTCCAT 57.503 45.000 0.00 0.00 0.00 3.41
1987 2138 1.267574 GGAGATGGACACCCTGAGCA 61.268 60.000 0.00 0.00 0.00 4.26
2170 2321 1.075970 AGCGGCTACCTGATCTCCA 60.076 57.895 0.00 0.00 0.00 3.86
2209 2360 2.242043 CCAAGTTGGCTGGAGTTGAAT 58.758 47.619 9.46 0.00 30.70 2.57
2210 2361 1.691196 CCAAGTTGGCTGGAGTTGAA 58.309 50.000 9.46 0.00 30.70 2.69
2237 2388 0.533032 GGTCAGGTCAGGACTGCTAC 59.467 60.000 0.00 0.00 35.94 3.58
2252 2403 1.546029 CAAGACAGAGATCACCGGTCA 59.454 52.381 2.59 0.00 0.00 4.02
2255 2406 0.460987 GCCAAGACAGAGATCACCGG 60.461 60.000 0.00 0.00 0.00 5.28
2275 2426 2.815945 CCTCCGGAGCTGCATGGAT 61.816 63.158 26.87 0.00 0.00 3.41
2337 2488 0.466555 ACCTCCTCGATCTCTTCCCG 60.467 60.000 0.00 0.00 0.00 5.14
2355 2506 2.504244 CGTCTCCTCGCCGACAAC 60.504 66.667 0.00 0.00 0.00 3.32
2410 2561 3.748027 GCAGAAGCAGGAGGATGAATGAT 60.748 47.826 0.00 0.00 41.58 2.45
2411 2562 2.421107 GCAGAAGCAGGAGGATGAATGA 60.421 50.000 0.00 0.00 41.58 2.57
2412 2563 1.948145 GCAGAAGCAGGAGGATGAATG 59.052 52.381 0.00 0.00 41.58 2.67
2429 2580 6.939132 AGATTTATGGTTCTGATCAAGCAG 57.061 37.500 5.60 0.00 37.20 4.24
2446 2597 3.385433 TCGCGGAGGTTGGAATAGATTTA 59.615 43.478 6.13 0.00 0.00 1.40
2453 2604 0.251916 TGATTCGCGGAGGTTGGAAT 59.748 50.000 6.13 0.00 32.15 3.01
2456 2607 0.657840 GATTGATTCGCGGAGGTTGG 59.342 55.000 6.13 0.00 0.00 3.77
2472 2623 8.636213 AGAAAACAGAGTGTCAAAATGATGATT 58.364 29.630 0.00 0.00 0.00 2.57
2479 2630 7.441157 TGATCGTAGAAAACAGAGTGTCAAAAT 59.559 33.333 0.00 0.00 43.58 1.82
2507 2662 3.695606 GTGAGCTGCGGGGAGTGA 61.696 66.667 0.00 0.00 0.00 3.41
2508 2663 4.767255 GGTGAGCTGCGGGGAGTG 62.767 72.222 0.00 0.00 0.00 3.51
2510 2665 4.463879 CAGGTGAGCTGCGGGGAG 62.464 72.222 0.00 0.00 0.00 4.30
2516 2671 1.818785 GATGAGGCAGGTGAGCTGC 60.819 63.158 26.95 26.95 46.20 5.25
2610 2765 4.932200 CAGGAACAATCTTGTGAGTCTACC 59.068 45.833 0.00 0.00 41.31 3.18
2631 2786 2.286294 GTGAGCGGTTCATATTCTGCAG 59.714 50.000 7.63 7.63 38.29 4.41
2787 2949 1.815421 GCCTCGATGTCAATGCCGT 60.815 57.895 0.00 0.00 0.00 5.68
2818 2980 1.376037 GGGCTCCAAGTCCTTGACG 60.376 63.158 8.59 0.79 42.93 4.35
2851 3013 3.971245 TTGGATTATGTTTGGGCCAAC 57.029 42.857 20.79 14.63 31.04 3.77
2857 3019 4.997565 ACGATGCTTTGGATTATGTTTGG 58.002 39.130 0.00 0.00 0.00 3.28
2869 3031 1.136252 CACACCGAAGACGATGCTTTG 60.136 52.381 0.00 0.00 36.34 2.77
2885 3048 9.849607 CGATTTTCATATCTATGTACAACACAC 57.150 33.333 0.00 0.00 40.86 3.82
2950 3113 6.578944 TGCTGAACTGAAGTAACTACAAGAA 58.421 36.000 0.00 0.00 0.00 2.52
2973 3136 4.201714 CGGTGCGCCAATATATATTGTCTG 60.202 45.833 26.36 18.55 41.04 3.51
2974 3137 3.932710 CGGTGCGCCAATATATATTGTCT 59.067 43.478 26.36 0.00 41.04 3.41
2975 3138 3.930229 TCGGTGCGCCAATATATATTGTC 59.070 43.478 26.36 17.45 41.04 3.18
2976 3139 3.932710 CTCGGTGCGCCAATATATATTGT 59.067 43.478 26.36 0.00 41.04 2.71
2977 3140 3.309682 CCTCGGTGCGCCAATATATATTG 59.690 47.826 23.28 23.28 42.00 1.90
3032 3202 7.497909 CCCGTACATTTAGATTGACCACTTATT 59.502 37.037 0.00 0.00 0.00 1.40
3044 3214 5.416947 GTGAACTGTCCCGTACATTTAGAT 58.583 41.667 0.00 0.00 37.50 1.98
3057 3227 1.512926 ATCTGTTGCGTGAACTGTCC 58.487 50.000 1.90 0.00 35.53 4.02
3067 3237 2.179589 GCTTGTGCATTATCTGTTGCG 58.820 47.619 0.00 0.00 41.80 4.85
3069 3239 3.853831 TGGCTTGTGCATTATCTGTTG 57.146 42.857 0.00 0.00 41.91 3.33
3079 3261 3.316071 CCATGTATTTTGGCTTGTGCA 57.684 42.857 0.00 0.00 41.91 4.57
3087 3269 5.354513 TGCATCATTTTGCCATGTATTTTGG 59.645 36.000 0.00 0.00 42.06 3.28
3092 3274 4.162698 ACCTTGCATCATTTTGCCATGTAT 59.837 37.500 0.00 0.00 42.06 2.29
3104 3286 0.994247 TCCTCACCACCTTGCATCAT 59.006 50.000 0.00 0.00 0.00 2.45
3105 3287 0.770499 TTCCTCACCACCTTGCATCA 59.230 50.000 0.00 0.00 0.00 3.07
3106 3288 1.457346 CTTCCTCACCACCTTGCATC 58.543 55.000 0.00 0.00 0.00 3.91
3110 3292 1.303643 GGGCTTCCTCACCACCTTG 60.304 63.158 0.00 0.00 0.00 3.61
3112 3294 2.208349 AGGGCTTCCTCACCACCT 59.792 61.111 0.00 0.00 35.60 4.00
3123 3305 2.226962 TCTACCGTGTAAGAGGGCTT 57.773 50.000 0.00 0.00 38.15 4.35
3146 3328 5.679906 CATTTAGATTGTCCGGCTATTTCG 58.320 41.667 0.00 0.00 0.00 3.46
3148 3330 4.887071 TGCATTTAGATTGTCCGGCTATTT 59.113 37.500 0.00 0.00 0.00 1.40
3172 3354 9.169468 GTATTATCTTTTGGCAACGTAATCATG 57.831 33.333 0.00 0.00 42.51 3.07
3173 3355 8.898761 TGTATTATCTTTTGGCAACGTAATCAT 58.101 29.630 0.00 0.00 42.51 2.45
3174 3356 8.270080 TGTATTATCTTTTGGCAACGTAATCA 57.730 30.769 0.00 1.75 42.51 2.57
3177 3359 8.046294 ACATGTATTATCTTTTGGCAACGTAA 57.954 30.769 0.00 0.00 42.51 3.18
3181 3363 7.996385 ACCTACATGTATTATCTTTTGGCAAC 58.004 34.615 5.91 0.00 0.00 4.17
3198 3380 5.407502 TGACGTTGTATTCAGACCTACATG 58.592 41.667 0.00 0.00 0.00 3.21
3200 3382 5.242171 TCTTGACGTTGTATTCAGACCTACA 59.758 40.000 0.00 0.00 0.00 2.74
3224 3414 5.309806 GGAACTTATATGTCCTATGGGGTGT 59.690 44.000 0.00 0.00 36.25 4.16
3228 3418 5.245301 TCGTGGAACTTATATGTCCTATGGG 59.755 44.000 0.00 0.00 31.75 4.00
3229 3419 6.157211 GTCGTGGAACTTATATGTCCTATGG 58.843 44.000 0.00 0.00 31.75 2.74
3239 3429 0.526096 GCGCCGTCGTGGAACTTATA 60.526 55.000 0.00 0.00 42.00 0.98
3240 3430 1.808390 GCGCCGTCGTGGAACTTAT 60.808 57.895 0.00 0.00 42.00 1.73
3259 3449 1.019278 CACCGTTTCCCCTCATGACG 61.019 60.000 0.00 0.00 0.00 4.35
3260 3450 0.036306 ACACCGTTTCCCCTCATGAC 59.964 55.000 0.00 0.00 0.00 3.06
3264 3454 1.527380 GCAACACCGTTTCCCCTCA 60.527 57.895 0.00 0.00 0.00 3.86
3284 3474 2.287069 CCTAGACTCAATAGTGGCGACG 60.287 54.545 0.00 0.00 35.56 5.12
3287 3477 2.287069 CGTCCTAGACTCAATAGTGGCG 60.287 54.545 0.00 0.00 35.56 5.69
3290 3480 6.879276 TTATCCGTCCTAGACTCAATAGTG 57.121 41.667 0.00 0.00 35.56 2.74
3292 3482 7.942990 ACTTTTATCCGTCCTAGACTCAATAG 58.057 38.462 0.00 0.00 0.00 1.73
3294 3484 6.608002 AGACTTTTATCCGTCCTAGACTCAAT 59.392 38.462 0.00 0.00 0.00 2.57
3296 3486 5.507637 AGACTTTTATCCGTCCTAGACTCA 58.492 41.667 0.00 0.00 0.00 3.41
3307 3497 6.697892 GTGTTCTAGATGGAGACTTTTATCCG 59.302 42.308 0.00 0.00 38.52 4.18
3314 3504 5.047660 GTGACAGTGTTCTAGATGGAGACTT 60.048 44.000 0.00 0.00 0.00 3.01
3318 3508 3.428180 CCGTGACAGTGTTCTAGATGGAG 60.428 52.174 0.00 0.00 0.00 3.86
3320 3510 2.492088 TCCGTGACAGTGTTCTAGATGG 59.508 50.000 0.00 0.00 0.00 3.51
3322 3512 3.687125 TCTCCGTGACAGTGTTCTAGAT 58.313 45.455 0.00 0.00 0.00 1.98
3335 3525 1.699730 TGTGGTTCTTCTCTCCGTGA 58.300 50.000 0.00 0.00 0.00 4.35
3338 3528 2.526304 TGTTGTGGTTCTTCTCTCCG 57.474 50.000 0.00 0.00 0.00 4.63
3347 3537 4.213482 GTCCTCAGTATGTTGTTGTGGTTC 59.787 45.833 0.00 0.00 37.40 3.62
3362 3552 1.897137 TGTCGTGCTCGTCCTCAGT 60.897 57.895 8.17 0.00 38.33 3.41
3365 3555 1.303799 TAGGTGTCGTGCTCGTCCTC 61.304 60.000 18.84 8.82 36.24 3.71
3367 3557 0.525668 CATAGGTGTCGTGCTCGTCC 60.526 60.000 8.17 9.33 38.33 4.79
3371 3561 0.173481 TGCTCATAGGTGTCGTGCTC 59.827 55.000 0.00 0.00 0.00 4.26
3373 3563 1.212616 GATGCTCATAGGTGTCGTGC 58.787 55.000 0.00 0.00 0.00 5.34
3383 3573 3.841379 GACGGCGGCGATGCTCATA 62.841 63.158 38.93 0.00 34.52 2.15
3416 3606 1.468520 TGAGCTGCCGAATAAAAGCAC 59.531 47.619 0.00 0.00 38.14 4.40
3423 3613 2.355986 ACGGGTGAGCTGCCGAATA 61.356 57.895 0.00 0.00 0.00 1.75
3449 3639 3.134127 GCGGTCTTGGGTGCATCC 61.134 66.667 9.82 9.82 0.00 3.51
3460 3650 1.598130 GTGCTTGTCAAGGCGGTCT 60.598 57.895 14.40 0.00 0.00 3.85
3461 3651 1.444119 TTGTGCTTGTCAAGGCGGTC 61.444 55.000 14.40 0.00 0.00 4.79
3469 3659 1.202794 TCTGATGGCTTGTGCTTGTCA 60.203 47.619 0.00 0.00 39.59 3.58
3491 3681 3.324846 ACAATAGCATCGCCCAGATCTAA 59.675 43.478 0.00 0.00 37.52 2.10
3492 3682 2.899900 ACAATAGCATCGCCCAGATCTA 59.100 45.455 0.00 0.00 37.52 1.98
3522 3712 0.958822 GGTGACTCGGGCACATTTTT 59.041 50.000 11.31 0.00 37.99 1.94
3524 3714 1.303317 GGGTGACTCGGGCACATTT 60.303 57.895 11.31 0.00 37.99 2.32
3543 3733 4.874977 GGCGAGAGGTGTAGCGGC 62.875 72.222 0.00 0.00 41.85 6.53
3546 3736 1.068250 GGATGGCGAGAGGTGTAGC 59.932 63.158 0.00 0.00 0.00 3.58
3554 3744 0.614697 TGGTCTTCTGGATGGCGAGA 60.615 55.000 0.00 0.00 0.00 4.04
3561 3751 4.163078 CCTATGTCACTTGGTCTTCTGGAT 59.837 45.833 0.00 0.00 0.00 3.41
3562 3752 3.515502 CCTATGTCACTTGGTCTTCTGGA 59.484 47.826 0.00 0.00 0.00 3.86
3598 3788 2.827423 CTCTCCAGCGGGCATCAT 59.173 61.111 0.00 0.00 0.00 2.45
3599 3789 4.166888 GCTCTCCAGCGGGCATCA 62.167 66.667 0.00 0.00 35.39 3.07
3617 3807 4.201657 CCAGATGATGGTCTGCATGTTTA 58.798 43.478 0.00 0.00 44.91 2.01
3654 3844 1.454479 GTGTCTGGGGGCATGGATG 60.454 63.158 0.00 0.00 0.00 3.51
3663 3853 0.332632 ATGATTGGTGGTGTCTGGGG 59.667 55.000 0.00 0.00 0.00 4.96
3675 3865 1.705337 GCCGTGACGTGGATGATTGG 61.705 60.000 3.64 0.00 0.00 3.16
3703 3893 2.422093 GCCTTTCCCTCCTCCTATTGTG 60.422 54.545 0.00 0.00 0.00 3.33
3705 3895 1.846439 TGCCTTTCCCTCCTCCTATTG 59.154 52.381 0.00 0.00 0.00 1.90
3707 3897 1.512735 GTGCCTTTCCCTCCTCCTAT 58.487 55.000 0.00 0.00 0.00 2.57
3744 3934 2.063015 AAACCCGGTGGCTGATGTCA 62.063 55.000 0.00 0.00 33.59 3.58
3745 3935 1.303317 AAACCCGGTGGCTGATGTC 60.303 57.895 0.00 0.00 33.59 3.06
3765 3955 0.462047 CTACCATGGAAGCACCGACC 60.462 60.000 21.47 0.00 42.61 4.79
3767 3957 0.616395 TCCTACCATGGAAGCACCGA 60.616 55.000 21.47 0.53 42.61 4.69
3774 3964 0.623723 GGGCACTTCCTACCATGGAA 59.376 55.000 21.47 0.25 43.16 3.53
3776 3966 0.394352 GTGGGCACTTCCTACCATGG 60.394 60.000 11.19 11.19 40.16 3.66
3819 4009 3.338275 TTGTATCCTGCCGGCCCAC 62.338 63.158 26.77 14.49 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.