Multiple sequence alignment - TraesCS4A01G232200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G232200 chr4A 100.000 4376 0 0 1 4376 541783613 541787988 0.000000e+00 8082
1 TraesCS4A01G232200 chr4A 90.224 1739 140 17 1561 3288 541800962 541802681 0.000000e+00 2242
2 TraesCS4A01G232200 chr4A 92.171 1405 87 6 2027 3421 541876660 541878051 0.000000e+00 1964
3 TraesCS4A01G232200 chr4A 89.480 808 70 6 3573 4370 541878071 541878873 0.000000e+00 1007
4 TraesCS4A01G232200 chr4A 97.208 573 15 1 3804 4376 541866138 541866709 0.000000e+00 968
5 TraesCS4A01G232200 chr4A 83.011 465 64 10 3631 4085 541800119 541800578 1.470000e-109 407
6 TraesCS4A01G232200 chr4A 78.285 548 90 19 3534 4064 541883731 541884266 4.220000e-85 326
7 TraesCS4A01G232200 chr4A 90.062 161 13 2 3573 3731 541865971 541866130 5.740000e-49 206
8 TraesCS4A01G232200 chr4B 92.537 4395 263 18 1 4360 82312570 82308206 0.000000e+00 6239
9 TraesCS4A01G232200 chr4D 92.030 3212 200 21 208 3405 55287132 55283963 0.000000e+00 4462
10 TraesCS4A01G232200 chr4D 77.388 1141 203 30 2311 3415 84795836 84794715 1.030000e-175 627
11 TraesCS4A01G232200 chr4D 92.793 222 15 1 3525 3746 55283399 55283179 1.960000e-83 320
12 TraesCS4A01G232200 chr3D 72.547 2324 530 83 1094 3359 1636350 1634077 0.000000e+00 658
13 TraesCS4A01G232200 chr3A 72.715 2188 511 69 1224 3364 7472138 7469990 0.000000e+00 654
14 TraesCS4A01G232200 chr3B 71.777 2420 573 82 1005 3364 5172534 5174903 6.310000e-163 584


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G232200 chr4A 541783613 541787988 4375 False 8082.0 8082 100.0000 1 4376 1 chr4A.!!$F1 4375
1 TraesCS4A01G232200 chr4A 541876660 541878873 2213 False 1485.5 1964 90.8255 2027 4370 2 chr4A.!!$F5 2343
2 TraesCS4A01G232200 chr4A 541800119 541802681 2562 False 1324.5 2242 86.6175 1561 4085 2 chr4A.!!$F3 2524
3 TraesCS4A01G232200 chr4A 541865971 541866709 738 False 587.0 968 93.6350 3573 4376 2 chr4A.!!$F4 803
4 TraesCS4A01G232200 chr4A 541883731 541884266 535 False 326.0 326 78.2850 3534 4064 1 chr4A.!!$F2 530
5 TraesCS4A01G232200 chr4B 82308206 82312570 4364 True 6239.0 6239 92.5370 1 4360 1 chr4B.!!$R1 4359
6 TraesCS4A01G232200 chr4D 55283179 55287132 3953 True 2391.0 4462 92.4115 208 3746 2 chr4D.!!$R2 3538
7 TraesCS4A01G232200 chr4D 84794715 84795836 1121 True 627.0 627 77.3880 2311 3415 1 chr4D.!!$R1 1104
8 TraesCS4A01G232200 chr3D 1634077 1636350 2273 True 658.0 658 72.5470 1094 3359 1 chr3D.!!$R1 2265
9 TraesCS4A01G232200 chr3A 7469990 7472138 2148 True 654.0 654 72.7150 1224 3364 1 chr3A.!!$R1 2140
10 TraesCS4A01G232200 chr3B 5172534 5174903 2369 False 584.0 584 71.7770 1005 3364 1 chr3B.!!$F1 2359

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
702 713 0.035915 GTTCCAGCCTCAAGGTCCTC 60.036 60.000 0.00 0.00 37.57 3.71 F
1029 1040 0.311477 GCGAGGTACCTTCCGATCTC 59.689 60.000 23.24 5.45 0.00 2.75 F
1251 1262 1.203052 CGCAACAAGCAAGAATGGGAT 59.797 47.619 0.00 0.00 46.13 3.85 F
2753 2799 0.614294 TACACCATAACCACCACGGG 59.386 55.000 0.00 0.00 40.22 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2023 2069 1.144708 TGCCCTCAAGATGGTTGAACA 59.855 47.619 0.00 0.00 0.00 3.18 R
2710 2756 0.028505 CGCCATTGCATCTGCTACAC 59.971 55.000 3.53 0.00 42.66 2.90 R
2876 2937 2.554032 CCTGATTGCAACCGAAGAAACT 59.446 45.455 0.00 0.00 0.00 2.66 R
4308 4976 1.296715 GGCCGTGAACCTGATCAGT 59.703 57.895 21.11 3.58 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.350382 TCATGTTCTCCTCTTCTACTCTACAT 58.650 38.462 0.00 0.00 0.00 2.29
115 116 3.254411 GCCCAAGAACCTTGAGAAAAGAG 59.746 47.826 8.16 0.00 0.00 2.85
160 161 7.865385 TCAGGTAAGCAACATACAAAAATTCAC 59.135 33.333 0.00 0.00 0.00 3.18
166 167 5.279456 GCAACATACAAAAATTCACCCTCCT 60.279 40.000 0.00 0.00 0.00 3.69
167 168 6.071616 GCAACATACAAAAATTCACCCTCCTA 60.072 38.462 0.00 0.00 0.00 2.94
168 169 7.538575 CAACATACAAAAATTCACCCTCCTAG 58.461 38.462 0.00 0.00 0.00 3.02
171 172 7.176690 ACATACAAAAATTCACCCTCCTAGTTG 59.823 37.037 0.00 0.00 0.00 3.16
227 234 8.589338 TCTAAATTCCCTCTGCTATGTAGATTC 58.411 37.037 0.00 0.00 0.00 2.52
306 313 0.811616 GCAGCGGCAAGTGCTACTAT 60.812 55.000 3.18 0.00 41.72 2.12
337 347 1.692519 ACCACCTCCACTCACAGTAAC 59.307 52.381 0.00 0.00 0.00 2.50
392 402 2.186903 CCATCGTCCTTGACCCGG 59.813 66.667 0.00 0.00 0.00 5.73
433 443 2.267324 GAGAGCACCCACCTCTGC 59.733 66.667 0.00 0.00 39.66 4.26
451 461 2.579738 GACTGGGAAGGCGTCTCC 59.420 66.667 0.00 0.00 0.00 3.71
496 506 1.062880 GTCGTCTCTCTTCACCTAGCG 59.937 57.143 0.00 0.00 0.00 4.26
501 511 2.096248 CTCTCTTCACCTAGCGAACCT 58.904 52.381 0.00 0.00 0.00 3.50
510 520 1.653151 CTAGCGAACCTGGGTTTAGC 58.347 55.000 18.88 18.88 38.60 3.09
562 572 3.119101 TGACGTTCCTCAGAAATCTAGCC 60.119 47.826 0.00 0.00 32.58 3.93
570 580 0.466124 AGAAATCTAGCCCTGCCGAC 59.534 55.000 0.00 0.00 0.00 4.79
633 643 1.985116 GTCGCCTCCAGACCCTCTT 60.985 63.158 0.00 0.00 32.78 2.85
702 713 0.035915 GTTCCAGCCTCAAGGTCCTC 60.036 60.000 0.00 0.00 37.57 3.71
813 824 1.143889 GGAACCATCCCTCCTTCCATC 59.856 57.143 0.00 0.00 40.10 3.51
821 832 1.450531 CCTCCTTCCATCGCCAATGC 61.451 60.000 0.00 0.00 33.71 3.56
862 873 2.534349 AGCTGTGCGTTTAATCGTATCG 59.466 45.455 7.69 0.86 0.00 2.92
864 875 3.000476 GCTGTGCGTTTAATCGTATCGAA 60.000 43.478 7.69 0.00 39.99 3.71
868 879 2.097056 GCGTTTAATCGTATCGAAGGCC 60.097 50.000 0.00 0.00 39.99 5.19
935 946 3.906720 TCTGGGTAGTAATCTGTTGGC 57.093 47.619 0.00 0.00 0.00 4.52
1020 1031 1.636148 TGTTAAGTGGCGAGGTACCT 58.364 50.000 16.26 16.26 0.00 3.08
1026 1037 1.380785 TGGCGAGGTACCTTCCGAT 60.381 57.895 23.24 0.00 0.00 4.18
1029 1040 0.311477 GCGAGGTACCTTCCGATCTC 59.689 60.000 23.24 5.45 0.00 2.75
1075 1086 2.180432 ACTTTCGTTAGCCCAGAACC 57.820 50.000 0.00 0.00 0.00 3.62
1077 1088 2.105993 ACTTTCGTTAGCCCAGAACCTT 59.894 45.455 0.00 0.00 0.00 3.50
1090 1101 4.631131 CCAGAACCTTTTTCATGGGAAAC 58.369 43.478 0.00 0.00 42.48 2.78
1143 1154 4.500603 ACGTGTCTTGGATATATCGACC 57.499 45.455 13.46 0.69 0.00 4.79
1191 1202 1.280133 TCCATTGGCAGACTCTCCAAG 59.720 52.381 10.48 4.65 44.59 3.61
1251 1262 1.203052 CGCAACAAGCAAGAATGGGAT 59.797 47.619 0.00 0.00 46.13 3.85
1275 1286 4.336889 TGTGAGTAGCTTAGCAAACTGT 57.663 40.909 15.25 0.00 29.56 3.55
1312 1323 6.071278 AGGTCTCTCGTTAGCAAGTAATCTTT 60.071 38.462 0.00 0.00 0.00 2.52
1412 1423 1.674651 GGAACTTTCCCTCCGGCAC 60.675 63.158 0.00 0.00 41.62 5.01
1467 1478 4.439057 TGGACTACAATCGATTTACAGGC 58.561 43.478 8.21 7.74 0.00 4.85
1498 1509 1.203100 ACTGGCTGGGAGCTTTCAAAT 60.203 47.619 0.00 0.00 41.99 2.32
1545 1556 4.830046 ACCAACATGTTTACAGGCAACATA 59.170 37.500 8.77 0.00 41.91 2.29
1621 1662 2.727123 TTCATTGGGCACATACCGAT 57.273 45.000 0.00 0.00 32.15 4.18
1666 1707 2.670401 GAAACACTGAGCGTTTCCAG 57.330 50.000 13.57 0.00 44.14 3.86
1673 1714 5.302360 ACACTGAGCGTTTCCAGTAATAAA 58.698 37.500 0.00 0.00 41.26 1.40
1710 1751 2.091994 CCAGAGGGGATCTTCAGCATTT 60.092 50.000 0.00 0.00 40.01 2.32
1882 1923 3.743521 TGGAAGACATTGAGTTGGACAG 58.256 45.455 0.00 0.00 0.00 3.51
1946 1987 5.125578 CCTATTTGGCCTAAAAGTCCTCAAC 59.874 44.000 3.32 0.00 0.00 3.18
2160 2206 6.094603 GCCTTCATGTTCTGTTATGTCTTCAT 59.905 38.462 0.00 0.00 38.00 2.57
2281 2327 5.007626 GGCAGAGGAAAAACCATTTGAAAAC 59.992 40.000 0.00 0.00 42.04 2.43
2288 2334 7.779326 AGGAAAAACCATTTGAAAACATCCATT 59.221 29.630 0.00 0.00 42.04 3.16
2324 2370 5.993748 TTGATGGTAAATTCCCCAAAGTC 57.006 39.130 0.59 0.00 33.66 3.01
2541 2587 1.266175 ACCGCAATCTAGTCCGTATCG 59.734 52.381 0.00 0.00 0.00 2.92
2585 2631 7.019774 TGATTCTAGCGGAAATGATTTCAAG 57.980 36.000 18.55 12.76 41.43 3.02
2668 2714 7.376072 GGAAGACAATGACAACTCTTTAAAACG 59.624 37.037 0.00 0.00 0.00 3.60
2708 2754 4.501400 GCTCAAAGGTTAAGCATTGTGGTT 60.501 41.667 18.79 0.00 41.42 3.67
2710 2756 4.057432 CAAAGGTTAAGCATTGTGGTTGG 58.943 43.478 13.08 0.00 38.66 3.77
2753 2799 0.614294 TACACCATAACCACCACGGG 59.386 55.000 0.00 0.00 40.22 5.28
2876 2937 0.321564 CCTTTGGTGGCTCGACATCA 60.322 55.000 0.00 0.00 0.00 3.07
2929 2990 6.018433 AGGATATGTTGCTCCAGGTATTTT 57.982 37.500 0.00 0.00 33.75 1.82
2931 2992 6.547510 AGGATATGTTGCTCCAGGTATTTTTC 59.452 38.462 0.00 0.00 33.75 2.29
2932 2993 6.547510 GGATATGTTGCTCCAGGTATTTTTCT 59.452 38.462 0.00 0.00 0.00 2.52
2933 2994 7.719633 GGATATGTTGCTCCAGGTATTTTTCTA 59.280 37.037 0.00 0.00 0.00 2.10
2934 2995 9.289782 GATATGTTGCTCCAGGTATTTTTCTAT 57.710 33.333 0.00 0.00 0.00 1.98
2961 3023 1.308998 ACGCTGTGGTTTTCTTCCTG 58.691 50.000 0.00 0.00 0.00 3.86
2962 3024 1.308998 CGCTGTGGTTTTCTTCCTGT 58.691 50.000 0.00 0.00 0.00 4.00
2983 3060 6.073003 CCTGTTTTACTTGGAAGTGTGAGATC 60.073 42.308 2.14 0.00 40.07 2.75
3002 3079 4.753233 GATCGAACTGATCCCTCCATATG 58.247 47.826 0.00 0.00 46.55 1.78
3165 3247 3.685139 TGCAGAGTAAACTTCCCTGAG 57.315 47.619 0.00 0.00 0.00 3.35
3299 3387 1.035139 CTTTGCTGCACCAAGTCCTT 58.965 50.000 0.00 0.00 0.00 3.36
3376 3471 5.253798 AGGGATGCATATATTGGAGGCTAAA 59.746 40.000 0.00 0.00 0.00 1.85
3421 4051 6.646240 TCAATAATTGCAGCTTGGACTTTTTC 59.354 34.615 0.00 0.00 0.00 2.29
3471 4105 9.562583 GCTTAACATTATTTTGTATTGAACCGA 57.437 29.630 0.00 0.00 0.00 4.69
3626 4266 4.497006 CCACAGCTAAGAGCATATGCAAAC 60.497 45.833 28.62 18.42 45.56 2.93
3641 4284 7.044966 GCATATGCAAACGTGTAAAGTCATAAC 60.045 37.037 22.84 0.00 41.59 1.89
3689 4334 2.438434 CGTGGGGAGGGCAATGAC 60.438 66.667 0.00 0.00 0.00 3.06
3692 4337 2.190578 GGGGAGGGCAATGACTCG 59.809 66.667 0.00 0.00 34.58 4.18
3771 4425 5.708230 AGCCAATGGTATTAAACACGAAGAA 59.292 36.000 0.00 0.00 0.00 2.52
4308 4976 5.221263 GCATCTCCTTAGTGAGGTTATTCGA 60.221 44.000 0.11 0.00 46.39 3.71
4371 5039 0.591659 GTTCACTTCTTGGGCGTTCC 59.408 55.000 0.00 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.935578 TCAGAGTTCTCTTCACATCCCTA 58.064 43.478 0.00 0.00 0.00 3.53
89 90 0.250295 CTCAAGGTTCTTGGGCACGA 60.250 55.000 7.67 0.00 0.00 4.35
130 131 9.606631 ATTTTTGTATGTTGCTTACCTGAAAAA 57.393 25.926 0.00 0.00 0.00 1.94
135 136 7.116233 GGTGAATTTTTGTATGTTGCTTACCTG 59.884 37.037 0.00 0.00 0.00 4.00
160 161 2.009774 CATGCGTTTCAACTAGGAGGG 58.990 52.381 0.00 0.00 0.00 4.30
166 167 0.878416 GGCCACATGCGTTTCAACTA 59.122 50.000 0.00 0.00 42.61 2.24
167 168 1.106351 TGGCCACATGCGTTTCAACT 61.106 50.000 0.00 0.00 42.61 3.16
168 169 0.249238 TTGGCCACATGCGTTTCAAC 60.249 50.000 3.88 0.00 42.61 3.18
171 172 1.729131 CGTTGGCCACATGCGTTTC 60.729 57.895 3.88 0.00 42.61 2.78
227 234 3.792401 TCATTGTGTTATACTCTGGCCG 58.208 45.455 0.00 0.00 0.00 6.13
306 313 1.669440 GAGGTGGTGACGGCTTGTA 59.331 57.895 0.00 0.00 0.00 2.41
337 347 1.376037 GGAGAGCCAGTCCGTTTGG 60.376 63.158 0.00 0.00 38.78 3.28
433 443 2.182030 GAGACGCCTTCCCAGTCG 59.818 66.667 0.00 0.00 39.65 4.18
451 461 3.721706 GGGTCCCTGGTCCTGCAG 61.722 72.222 6.78 6.78 0.00 4.41
496 506 1.378119 CCCCGCTAAACCCAGGTTC 60.378 63.158 1.78 0.00 37.35 3.62
501 511 2.830186 GATGTGCCCCGCTAAACCCA 62.830 60.000 0.00 0.00 0.00 4.51
510 520 1.227764 CATGGAGAGATGTGCCCCG 60.228 63.158 0.00 0.00 0.00 5.73
562 572 0.878523 TGAAAGTGTTCGTCGGCAGG 60.879 55.000 0.00 0.00 36.46 4.85
570 580 1.070134 TCTCCCCTGTGAAAGTGTTCG 59.930 52.381 0.00 0.00 36.46 3.95
633 643 1.570813 CAGAGTGTTGTTGCTCACGA 58.429 50.000 0.00 0.00 39.25 4.35
702 713 2.030540 CAGACCATTGTTGTTGAGCCAG 60.031 50.000 0.00 0.00 0.00 4.85
821 832 0.673022 GAGCTTCCTCAGTGCTGTGG 60.673 60.000 12.61 12.61 43.55 4.17
862 873 2.514824 GTCAGGGATGCGGCCTTC 60.515 66.667 0.00 0.00 0.00 3.46
868 879 2.169789 CAAGCTCGTCAGGGATGCG 61.170 63.158 0.00 0.00 0.00 4.73
935 946 1.588082 GCTGGTGGAAACATGCCTG 59.412 57.895 0.00 0.00 46.14 4.85
1026 1037 3.361281 TTAGGCAGAGAGTTACCGAGA 57.639 47.619 0.00 0.00 0.00 4.04
1029 1040 3.004944 GGAGATTAGGCAGAGAGTTACCG 59.995 52.174 0.00 0.00 0.00 4.02
1087 1098 2.899303 ACGAATGAATGGGGGAGTTT 57.101 45.000 0.00 0.00 0.00 2.66
1090 1101 3.004734 GCATTTACGAATGAATGGGGGAG 59.995 47.826 3.47 0.00 44.37 4.30
1143 1154 4.177783 GCACAACCCCGGTAAAATTATTG 58.822 43.478 0.00 0.00 0.00 1.90
1191 1202 7.739295 TCGTCTCAATATTTAACTTGACAAGC 58.261 34.615 15.24 0.00 0.00 4.01
1251 1262 5.588648 ACAGTTTGCTAAGCTACTCACAAAA 59.411 36.000 0.00 0.00 0.00 2.44
1275 1286 3.271729 CGAGAGACCTTGTAGCTCAGTA 58.728 50.000 0.00 0.00 0.00 2.74
1312 1323 3.806949 ATTTGGCACCTGACCTTCTAA 57.193 42.857 0.00 0.00 0.00 2.10
1353 1364 8.869109 TGTCCCAAAAACAGATATTGAAGATTT 58.131 29.630 0.00 0.00 0.00 2.17
1354 1365 8.421249 TGTCCCAAAAACAGATATTGAAGATT 57.579 30.769 0.00 0.00 0.00 2.40
1404 1415 0.040067 GAAAGTTTGCTGTGCCGGAG 60.040 55.000 5.05 0.00 0.00 4.63
1412 1423 2.031120 TCAGGTTGGGAAAGTTTGCTG 58.969 47.619 7.08 0.00 0.00 4.41
1498 1509 6.257630 GTGGATAAGCTCAGTTTTTGCAAAAA 59.742 34.615 28.85 28.85 35.67 1.94
1545 1556 3.923273 AAATTGGAAAGGGAGGAAGGT 57.077 42.857 0.00 0.00 0.00 3.50
1710 1751 9.486123 TGATAATCCAATTTCCCTTATTGTTGA 57.514 29.630 0.00 0.00 32.38 3.18
1842 1883 2.563702 CAAACTTTTGCAAGCACCCAT 58.436 42.857 0.00 0.00 32.57 4.00
1882 1923 6.096846 AGGGATGTTGCCACTGAAAATATTAC 59.903 38.462 0.00 0.00 0.00 1.89
1907 1948 5.303971 CCAAATAGGTTGCCAAATGAAACA 58.696 37.500 0.00 0.00 35.74 2.83
2023 2069 1.144708 TGCCCTCAAGATGGTTGAACA 59.855 47.619 0.00 0.00 0.00 3.18
2281 2327 5.065602 TCAAATGAGAGCGAAGAAATGGATG 59.934 40.000 0.00 0.00 0.00 3.51
2288 2334 3.942829 ACCATCAAATGAGAGCGAAGAA 58.057 40.909 0.00 0.00 0.00 2.52
2324 2370 9.255304 GTTGCTCTAACAAGATCCTTATAAGAG 57.745 37.037 14.28 4.52 39.16 2.85
2585 2631 2.579207 TGAACTCATACACTAGCGCC 57.421 50.000 2.29 0.00 0.00 6.53
2668 2714 3.338249 TGAGCAAGTGAAATGTAGCTCC 58.662 45.455 9.42 0.00 45.76 4.70
2708 2754 1.753930 CCATTGCATCTGCTACACCA 58.246 50.000 3.53 0.00 42.66 4.17
2710 2756 0.028505 CGCCATTGCATCTGCTACAC 59.971 55.000 3.53 0.00 42.66 2.90
2753 2799 7.965107 GGTTTGAGATCACAATGAACAATACTC 59.035 37.037 6.40 0.00 0.00 2.59
2876 2937 2.554032 CCTGATTGCAACCGAAGAAACT 59.446 45.455 0.00 0.00 0.00 2.66
2945 3007 6.451064 AGTAAAACAGGAAGAAAACCACAG 57.549 37.500 0.00 0.00 0.00 3.66
2961 3023 5.694910 TCGATCTCACACTTCCAAGTAAAAC 59.305 40.000 0.00 0.00 37.08 2.43
2962 3024 5.849510 TCGATCTCACACTTCCAAGTAAAA 58.150 37.500 0.00 0.00 37.08 1.52
2983 3060 3.657634 CACATATGGAGGGATCAGTTCG 58.342 50.000 7.80 0.00 0.00 3.95
2993 3070 5.219343 TCTGTAGATTGCACATATGGAGG 57.781 43.478 7.80 0.00 0.00 4.30
2997 3074 8.782339 TCCATATTCTGTAGATTGCACATATG 57.218 34.615 0.00 0.00 0.00 1.78
3002 3079 4.151335 CGCTCCATATTCTGTAGATTGCAC 59.849 45.833 0.00 0.00 0.00 4.57
3165 3247 3.005341 TCGACGATCTGCATCATCTTC 57.995 47.619 0.00 0.00 0.00 2.87
3299 3387 0.874390 GCTGATGCGTTCACTTGGAA 59.126 50.000 0.00 0.00 0.00 3.53
3421 4051 3.573967 AGACCATACTTTTGCACCCAAAG 59.426 43.478 7.64 7.64 41.58 2.77
3626 4266 6.908820 TCATACTAGCGTTATGACTTTACACG 59.091 38.462 0.00 0.00 0.00 4.49
3641 4284 5.059832 GCTCATCGTTTACATCATACTAGCG 59.940 44.000 0.00 0.00 0.00 4.26
3672 4317 2.438434 GTCATTGCCCTCCCCACG 60.438 66.667 0.00 0.00 0.00 4.94
3689 4334 2.040178 AGGCCCTACAAATCCTACGAG 58.960 52.381 0.00 0.00 0.00 4.18
3692 4337 2.298610 GCAAGGCCCTACAAATCCTAC 58.701 52.381 0.00 0.00 0.00 3.18
4267 4935 4.151883 AGATGCCCACAACAGTTTAACAT 58.848 39.130 0.00 0.00 0.00 2.71
4308 4976 1.296715 GGCCGTGAACCTGATCAGT 59.703 57.895 21.11 3.58 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.