Multiple sequence alignment - TraesCS4A01G232000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G232000 chr4A 100.000 8262 0 0 1486 9747 541672571 541680832 0.000000e+00 15258.0
1 TraesCS4A01G232000 chr4A 100.000 1174 0 0 1 1174 541671086 541672259 0.000000e+00 2169.0
2 TraesCS4A01G232000 chr4A 99.103 223 2 0 6702 6924 541677565 541677787 1.520000e-107 401.0
3 TraesCS4A01G232000 chr4A 99.103 223 2 0 6480 6702 541677787 541678009 1.520000e-107 401.0
4 TraesCS4A01G232000 chr4A 95.495 222 7 2 4545 4765 17977726 17977945 1.560000e-92 351.0
5 TraesCS4A01G232000 chr4A 94.762 210 9 1 4557 4766 33863333 33863126 9.440000e-85 326.0
6 TraesCS4A01G232000 chr4A 89.916 238 20 4 4562 4797 236158999 236158764 4.420000e-78 303.0
7 TraesCS4A01G232000 chr4A 96.875 160 5 0 4604 4763 225333233 225333074 1.610000e-67 268.0
8 TraesCS4A01G232000 chr4D 94.691 2995 91 32 1486 4434 55362467 55359495 0.000000e+00 4588.0
9 TraesCS4A01G232000 chr4D 93.011 1574 67 22 7192 8747 55358866 55357318 0.000000e+00 2257.0
10 TraesCS4A01G232000 chr4D 91.163 645 36 8 9114 9747 55356839 55356205 0.000000e+00 856.0
11 TraesCS4A01G232000 chr4D 93.939 495 22 2 6702 7196 55359406 55358920 0.000000e+00 741.0
12 TraesCS4A01G232000 chr4D 93.609 266 17 0 6442 6707 55359444 55359179 1.970000e-106 398.0
13 TraesCS4A01G232000 chr4D 93.119 218 9 4 8694 8907 55357318 55357103 2.040000e-81 315.0
14 TraesCS4A01G232000 chr4D 94.792 192 8 2 983 1174 55362716 55362527 2.060000e-76 298.0
15 TraesCS4A01G232000 chr4D 98.246 57 0 1 4462 4517 55359496 55359440 2.240000e-16 99.0
16 TraesCS4A01G232000 chr4D 100.000 29 0 0 947 975 55362732 55362704 5.000000e-03 54.7
17 TraesCS4A01G232000 chr4B 93.194 3100 107 41 1486 4517 82427432 82424369 0.000000e+00 4460.0
18 TraesCS4A01G232000 chr4B 94.094 1744 71 17 7192 8907 82423793 82422054 0.000000e+00 2621.0
19 TraesCS4A01G232000 chr4B 92.154 650 30 9 9114 9747 82421855 82421211 0.000000e+00 898.0
20 TraesCS4A01G232000 chr4B 94.545 495 19 5 6702 7196 82424335 82423849 0.000000e+00 758.0
21 TraesCS4A01G232000 chr4B 93.609 266 17 0 6442 6707 82424373 82424108 1.970000e-106 398.0
22 TraesCS4A01G232000 chr4B 92.593 189 10 1 983 1167 82427681 82427493 1.610000e-67 268.0
23 TraesCS4A01G232000 chr4B 100.000 29 0 0 947 975 82427697 82427669 5.000000e-03 54.7
24 TraesCS4A01G232000 chr2A 97.137 1956 36 2 4515 6450 79318364 79316409 0.000000e+00 3284.0
25 TraesCS4A01G232000 chr2A 93.695 1935 42 20 4545 6441 688640542 688638650 0.000000e+00 2824.0
26 TraesCS4A01G232000 chr2A 91.890 1381 81 11 5083 6441 242002634 242004005 0.000000e+00 1901.0
27 TraesCS4A01G232000 chr2A 91.678 757 42 8 194 936 735870915 735870166 0.000000e+00 1029.0
28 TraesCS4A01G232000 chr2A 96.512 172 5 1 1 171 735892273 735892102 5.760000e-72 283.0
29 TraesCS4A01G232000 chr3A 95.605 1934 48 7 4545 6441 588512303 588514236 0.000000e+00 3066.0
30 TraesCS4A01G232000 chr3A 94.881 1934 36 6 4545 6441 663295598 663293691 0.000000e+00 2964.0
31 TraesCS4A01G232000 chr3A 93.905 1936 78 7 4545 6441 128573399 128575333 0.000000e+00 2885.0
32 TraesCS4A01G232000 chr3A 94.243 1129 50 11 5318 6441 352502492 352501374 0.000000e+00 1711.0
33 TraesCS4A01G232000 chr1A 95.881 1918 37 8 4545 6441 382230959 382232855 0.000000e+00 3066.0
34 TraesCS4A01G232000 chr1A 87.379 103 10 3 1696 1797 573697829 573697729 2.220000e-21 115.0
35 TraesCS4A01G232000 chr2B 95.450 1934 41 5 4545 6441 570091084 570093007 0.000000e+00 3040.0
36 TraesCS4A01G232000 chr3B 95.124 1928 74 11 4518 6441 127856846 127858757 0.000000e+00 3022.0
37 TraesCS4A01G232000 chr7A 94.807 1945 69 7 4518 6441 99810364 99812297 0.000000e+00 3003.0
38 TraesCS4A01G232000 chr7A 94.090 1946 79 11 4517 6441 20278228 20280158 0.000000e+00 2924.0
39 TraesCS4A01G232000 chr5A 94.574 1935 66 6 4545 6441 643336370 643338303 0.000000e+00 2955.0
40 TraesCS4A01G232000 chr5A 94.850 1204 43 3 4517 5703 547535018 547536219 0.000000e+00 1862.0
41 TraesCS4A01G232000 chr7B 94.109 1935 75 6 4545 6441 356735734 356733801 0.000000e+00 2905.0
42 TraesCS4A01G232000 chr6A 94.393 1712 69 10 4752 6441 576229346 576231052 0.000000e+00 2604.0
43 TraesCS4A01G232000 chr1B 91.917 1163 82 12 5286 6441 74241129 74239972 0.000000e+00 1616.0
44 TraesCS4A01G232000 chr1B 91.330 669 33 4 5776 6441 359442832 359442186 0.000000e+00 891.0
45 TraesCS4A01G232000 chr2D 89.282 961 55 12 1 936 11100410 11101347 0.000000e+00 1160.0
46 TraesCS4A01G232000 chr2D 85.223 873 67 33 105 939 623886787 623885939 0.000000e+00 841.0
47 TraesCS4A01G232000 chr2D 86.957 92 4 4 1 91 623887803 623887719 8.060000e-16 97.1
48 TraesCS4A01G232000 chr6D 89.178 961 54 17 1 936 237741151 237742086 0.000000e+00 1153.0
49 TraesCS4A01G232000 chr6D 88.970 961 58 12 1 936 108161146 108160209 0.000000e+00 1144.0
50 TraesCS4A01G232000 chr6D 83.527 862 91 26 105 936 57481409 57482249 0.000000e+00 758.0
51 TraesCS4A01G232000 chr6D 86.957 92 4 4 1 91 57480344 57480428 8.060000e-16 97.1
52 TraesCS4A01G232000 chrUn 88.199 966 54 15 1 936 31387835 31388770 0.000000e+00 1098.0
53 TraesCS4A01G232000 chrUn 86.567 871 63 28 105 936 112648022 112648877 0.000000e+00 911.0
54 TraesCS4A01G232000 chr1D 89.145 866 46 14 1 840 396312722 396311879 0.000000e+00 1035.0
55 TraesCS4A01G232000 chr1D 89.147 129 12 2 220 347 467524534 467524407 1.010000e-34 159.0
56 TraesCS4A01G232000 chr7D 86.729 859 73 17 105 936 473878173 473879017 0.000000e+00 917.0
57 TraesCS4A01G232000 chr7D 86.957 92 4 4 1 91 473877123 473877207 8.060000e-16 97.1
58 TraesCS4A01G232000 chr5B 89.026 647 62 8 297 936 425675257 425674613 0.000000e+00 793.0
59 TraesCS4A01G232000 chr5B 88.426 216 23 2 90 303 425675652 425675437 9.710000e-65 259.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G232000 chr4A 541671086 541680832 9746 False 4557.250000 15258 99.551500 1 9747 4 chr4A.!!$F2 9746
1 TraesCS4A01G232000 chr4D 55356205 55362732 6527 True 1067.411111 4588 94.730000 947 9747 9 chr4D.!!$R1 8800
2 TraesCS4A01G232000 chr4B 82421211 82427697 6486 True 1351.100000 4460 94.312714 947 9747 7 chr4B.!!$R1 8800
3 TraesCS4A01G232000 chr2A 79316409 79318364 1955 True 3284.000000 3284 97.137000 4515 6450 1 chr2A.!!$R1 1935
4 TraesCS4A01G232000 chr2A 688638650 688640542 1892 True 2824.000000 2824 93.695000 4545 6441 1 chr2A.!!$R2 1896
5 TraesCS4A01G232000 chr2A 242002634 242004005 1371 False 1901.000000 1901 91.890000 5083 6441 1 chr2A.!!$F1 1358
6 TraesCS4A01G232000 chr2A 735870166 735870915 749 True 1029.000000 1029 91.678000 194 936 1 chr2A.!!$R3 742
7 TraesCS4A01G232000 chr3A 588512303 588514236 1933 False 3066.000000 3066 95.605000 4545 6441 1 chr3A.!!$F2 1896
8 TraesCS4A01G232000 chr3A 663293691 663295598 1907 True 2964.000000 2964 94.881000 4545 6441 1 chr3A.!!$R2 1896
9 TraesCS4A01G232000 chr3A 128573399 128575333 1934 False 2885.000000 2885 93.905000 4545 6441 1 chr3A.!!$F1 1896
10 TraesCS4A01G232000 chr3A 352501374 352502492 1118 True 1711.000000 1711 94.243000 5318 6441 1 chr3A.!!$R1 1123
11 TraesCS4A01G232000 chr1A 382230959 382232855 1896 False 3066.000000 3066 95.881000 4545 6441 1 chr1A.!!$F1 1896
12 TraesCS4A01G232000 chr2B 570091084 570093007 1923 False 3040.000000 3040 95.450000 4545 6441 1 chr2B.!!$F1 1896
13 TraesCS4A01G232000 chr3B 127856846 127858757 1911 False 3022.000000 3022 95.124000 4518 6441 1 chr3B.!!$F1 1923
14 TraesCS4A01G232000 chr7A 99810364 99812297 1933 False 3003.000000 3003 94.807000 4518 6441 1 chr7A.!!$F2 1923
15 TraesCS4A01G232000 chr7A 20278228 20280158 1930 False 2924.000000 2924 94.090000 4517 6441 1 chr7A.!!$F1 1924
16 TraesCS4A01G232000 chr5A 643336370 643338303 1933 False 2955.000000 2955 94.574000 4545 6441 1 chr5A.!!$F2 1896
17 TraesCS4A01G232000 chr5A 547535018 547536219 1201 False 1862.000000 1862 94.850000 4517 5703 1 chr5A.!!$F1 1186
18 TraesCS4A01G232000 chr7B 356733801 356735734 1933 True 2905.000000 2905 94.109000 4545 6441 1 chr7B.!!$R1 1896
19 TraesCS4A01G232000 chr6A 576229346 576231052 1706 False 2604.000000 2604 94.393000 4752 6441 1 chr6A.!!$F1 1689
20 TraesCS4A01G232000 chr1B 74239972 74241129 1157 True 1616.000000 1616 91.917000 5286 6441 1 chr1B.!!$R1 1155
21 TraesCS4A01G232000 chr1B 359442186 359442832 646 True 891.000000 891 91.330000 5776 6441 1 chr1B.!!$R2 665
22 TraesCS4A01G232000 chr2D 11100410 11101347 937 False 1160.000000 1160 89.282000 1 936 1 chr2D.!!$F1 935
23 TraesCS4A01G232000 chr2D 623885939 623887803 1864 True 469.050000 841 86.090000 1 939 2 chr2D.!!$R1 938
24 TraesCS4A01G232000 chr6D 237741151 237742086 935 False 1153.000000 1153 89.178000 1 936 1 chr6D.!!$F1 935
25 TraesCS4A01G232000 chr6D 108160209 108161146 937 True 1144.000000 1144 88.970000 1 936 1 chr6D.!!$R1 935
26 TraesCS4A01G232000 chr6D 57480344 57482249 1905 False 427.550000 758 85.242000 1 936 2 chr6D.!!$F2 935
27 TraesCS4A01G232000 chrUn 31387835 31388770 935 False 1098.000000 1098 88.199000 1 936 1 chrUn.!!$F1 935
28 TraesCS4A01G232000 chrUn 112648022 112648877 855 False 911.000000 911 86.567000 105 936 1 chrUn.!!$F2 831
29 TraesCS4A01G232000 chr1D 396311879 396312722 843 True 1035.000000 1035 89.145000 1 840 1 chr1D.!!$R1 839
30 TraesCS4A01G232000 chr7D 473877123 473879017 1894 False 507.050000 917 86.843000 1 936 2 chr7D.!!$F1 935
31 TraesCS4A01G232000 chr5B 425674613 425675652 1039 True 526.000000 793 88.726000 90 936 2 chr5B.!!$R1 846

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
994 2193 0.108615 AGGATTCAGAGAACACGCCG 60.109 55.000 0.00 0.00 0.00 6.46 F
1504 2707 1.168714 AATCGCTCTTGTTCTTGGCC 58.831 50.000 0.00 0.00 0.00 5.36 F
2364 3609 0.308993 CCTGCTAAGCCGCTTAATGC 59.691 55.000 13.74 14.16 38.57 3.56 F
3079 4334 1.658095 CAACCACCACAAGTTTTTGCG 59.342 47.619 0.00 0.00 37.85 4.85 F
4269 5544 2.106684 GTTGGTTCTCAGTCCCCTTCTT 59.893 50.000 0.00 0.00 0.00 2.52 F
5440 6782 1.079405 GATCAAGTTCCCGCCGTCA 60.079 57.895 0.00 0.00 0.00 4.35 F
6447 7815 1.400142 GCAGCGCCATAACATTACACA 59.600 47.619 2.29 0.00 0.00 3.72 F
6608 7976 0.250901 ACCTGCTGGTTGGTAGCTTG 60.251 55.000 9.88 0.00 46.05 4.01 F
7270 8698 0.676184 TGGCTCAGAGTCTCACACAC 59.324 55.000 3.09 0.00 0.00 3.82 F
8574 10029 1.148310 CGGCTTGACGATGAAGTTGT 58.852 50.000 0.00 0.00 35.47 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2201 3438 1.317613 ATGCGCACCAAAGTTCTCAA 58.682 45.000 14.90 0.0 0.00 3.02 R
3185 4440 1.779569 AGCAGGAAGTTACGTTGTCG 58.220 50.000 0.00 0.0 43.34 4.35 R
4193 5467 2.285256 CGTGAGCAGAATGTGATAACGC 60.285 50.000 0.00 0.0 39.31 4.84 R
4954 6232 1.719529 TAGGACCCGACCAAGAACAA 58.280 50.000 0.00 0.0 0.00 2.83 R
5508 6850 0.750850 GCGGGTAGTGATCCAAGCTA 59.249 55.000 0.00 0.0 0.00 3.32 R
6590 7958 0.250901 ACAAGCTACCAACCAGCAGG 60.251 55.000 0.00 0.0 41.66 4.85 R
7456 8884 0.673437 CGGCTCCCAAAAAGCTTTCA 59.327 50.000 13.10 0.0 39.75 2.69 R
7462 8890 1.328279 AAGGAACGGCTCCCAAAAAG 58.672 50.000 2.37 0.0 46.81 2.27 R
8674 10131 1.243902 GCTTCCCGTTGGTCATTTCA 58.756 50.000 0.00 0.0 0.00 2.69 R
9603 11226 6.320418 GTGACAGGGTTACAAAATATTAGGGG 59.680 42.308 0.00 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
260 1246 0.528924 CGACAGTCAATCCGGTGGTA 59.471 55.000 0.00 0.00 0.00 3.25
262 1248 2.359848 CGACAGTCAATCCGGTGGTATA 59.640 50.000 0.00 0.00 0.00 1.47
339 1511 3.186409 GTGCAAGAAAGTCGTCTGCATAA 59.814 43.478 0.00 0.00 35.56 1.90
403 1590 2.534019 CGGCTGCAAACTGTCGTGT 61.534 57.895 0.50 0.00 37.97 4.49
525 1719 1.810151 TGGGTGCGATCTTTTTACAGC 59.190 47.619 0.00 0.00 0.00 4.40
665 1859 7.674348 TGGAGTACTTATGGGAGATATTTCGAT 59.326 37.037 0.00 0.00 0.00 3.59
765 1964 7.859875 ACTCGTACTACTTGACTTTAGTTTCAC 59.140 37.037 0.00 0.00 30.97 3.18
886 2085 5.337554 CACATGGCTCAATAACAATGACTG 58.662 41.667 0.00 0.00 0.00 3.51
887 2086 5.012239 ACATGGCTCAATAACAATGACTGT 58.988 37.500 0.00 0.00 41.27 3.55
893 2092 7.611467 TGGCTCAATAACAATGACTGTCTAAAT 59.389 33.333 9.51 0.00 37.23 1.40
978 2177 3.812019 GAGAGAACGCGCCGAGGA 61.812 66.667 5.73 0.00 0.00 3.71
979 2178 3.127352 GAGAGAACGCGCCGAGGAT 62.127 63.158 5.73 0.00 0.00 3.24
980 2179 2.202756 GAGAACGCGCCGAGGATT 60.203 61.111 5.73 0.00 0.00 3.01
981 2180 2.202756 AGAACGCGCCGAGGATTC 60.203 61.111 5.73 0.00 0.00 2.52
982 2181 2.508439 GAACGCGCCGAGGATTCA 60.508 61.111 5.73 0.00 0.00 2.57
983 2182 2.509336 AACGCGCCGAGGATTCAG 60.509 61.111 5.73 0.00 0.00 3.02
984 2183 2.884087 GAACGCGCCGAGGATTCAGA 62.884 60.000 5.73 0.00 0.00 3.27
985 2184 2.656651 CGCGCCGAGGATTCAGAG 60.657 66.667 0.00 0.00 0.00 3.35
986 2185 2.808315 GCGCCGAGGATTCAGAGA 59.192 61.111 0.00 0.00 0.00 3.10
987 2186 1.141881 GCGCCGAGGATTCAGAGAA 59.858 57.895 0.00 0.00 0.00 2.87
988 2187 1.148759 GCGCCGAGGATTCAGAGAAC 61.149 60.000 0.00 0.00 0.00 3.01
989 2188 0.173481 CGCCGAGGATTCAGAGAACA 59.827 55.000 0.00 0.00 0.00 3.18
990 2189 1.646189 GCCGAGGATTCAGAGAACAC 58.354 55.000 0.00 0.00 0.00 3.32
991 2190 1.914634 CCGAGGATTCAGAGAACACG 58.085 55.000 0.00 0.00 0.00 4.49
992 2191 1.272781 CGAGGATTCAGAGAACACGC 58.727 55.000 0.00 0.00 0.00 5.34
993 2192 1.646189 GAGGATTCAGAGAACACGCC 58.354 55.000 0.00 0.00 0.00 5.68
994 2193 0.108615 AGGATTCAGAGAACACGCCG 60.109 55.000 0.00 0.00 0.00 6.46
1039 2238 2.110006 GCCGAGAATGCTCCTCCC 59.890 66.667 0.00 0.00 37.91 4.30
1112 2311 1.743623 CACCGCCGATGGTAAGCAA 60.744 57.895 0.00 0.00 41.38 3.91
1167 2370 2.040813 ACCGATCGAACCTAGGCCTATA 59.959 50.000 18.66 0.00 0.00 1.31
1168 2371 3.288964 CCGATCGAACCTAGGCCTATAT 58.711 50.000 18.66 0.89 0.00 0.86
1169 2372 3.700038 CCGATCGAACCTAGGCCTATATT 59.300 47.826 18.66 10.67 0.00 1.28
1170 2373 4.202030 CCGATCGAACCTAGGCCTATATTC 60.202 50.000 18.66 17.69 0.00 1.75
1172 2375 4.122337 TCGAACCTAGGCCTATATTCCA 57.878 45.455 21.89 12.49 0.00 3.53
1504 2707 1.168714 AATCGCTCTTGTTCTTGGCC 58.831 50.000 0.00 0.00 0.00 5.36
1562 2765 2.356553 CGGCGGGACAAAGTCGAA 60.357 61.111 0.00 0.00 37.72 3.71
1570 2773 1.594331 GACAAAGTCGAAGGCAAGGT 58.406 50.000 0.00 0.00 0.00 3.50
1642 2850 2.825086 ATTCCGTATGCTTGCGTTTC 57.175 45.000 9.11 0.00 0.00 2.78
1710 2918 3.188460 CGTGGGATTGGTGAGTTTACTTG 59.812 47.826 0.00 0.00 0.00 3.16
1714 2922 4.455877 GGGATTGGTGAGTTTACTTGTCTG 59.544 45.833 0.00 0.00 0.00 3.51
1721 2929 5.692654 GGTGAGTTTACTTGTCTGTCTCTTC 59.307 44.000 0.00 0.00 0.00 2.87
2019 3251 9.647918 ATGTAGTTATAGACAGAGGAAGAATCA 57.352 33.333 0.00 0.00 0.00 2.57
2027 3263 7.732222 AGACAGAGGAAGAATCAATAGAACT 57.268 36.000 0.00 0.00 0.00 3.01
2028 3264 8.144862 AGACAGAGGAAGAATCAATAGAACTT 57.855 34.615 0.00 0.00 0.00 2.66
2029 3265 9.261035 AGACAGAGGAAGAATCAATAGAACTTA 57.739 33.333 0.00 0.00 0.00 2.24
2030 3266 9.528018 GACAGAGGAAGAATCAATAGAACTTAG 57.472 37.037 0.00 0.00 0.00 2.18
2061 3297 9.764363 TGTGCTAGTTTATTAATGAGGATAGTG 57.236 33.333 0.00 0.00 0.00 2.74
2062 3298 9.982651 GTGCTAGTTTATTAATGAGGATAGTGA 57.017 33.333 0.00 0.00 0.00 3.41
2115 3351 6.592207 ACTTTTTATATCCCTAACCTGGCT 57.408 37.500 0.00 0.00 0.00 4.75
2118 3354 8.562635 ACTTTTTATATCCCTAACCTGGCTTTA 58.437 33.333 0.00 0.00 0.00 1.85
2157 3394 3.313249 CCATGCTCATGCTTGTTTCGATA 59.687 43.478 4.40 0.00 41.15 2.92
2196 3433 8.697846 TGAGAAACCTTGTAATACAACTATCG 57.302 34.615 1.08 0.00 33.96 2.92
2201 3438 6.403878 ACCTTGTAATACAACTATCGTGCTT 58.596 36.000 1.08 0.00 33.96 3.91
2216 3453 2.463876 GTGCTTTGAGAACTTTGGTGC 58.536 47.619 0.00 0.00 0.00 5.01
2296 3541 9.850628 GCATCATAACTGATATTGCAAATATGT 57.149 29.630 1.71 0.00 40.20 2.29
2364 3609 0.308993 CCTGCTAAGCCGCTTAATGC 59.691 55.000 13.74 14.16 38.57 3.56
2429 3674 3.384168 AGCCAGATGGAGGTATTACACA 58.616 45.455 2.18 0.00 37.39 3.72
2449 3694 7.346751 ACACATTGTTCATTAGTGAAAGGTT 57.653 32.000 1.77 0.00 45.38 3.50
2537 3782 6.051717 AGAACCTATTCATGGATCACTTTCG 58.948 40.000 0.00 0.00 37.29 3.46
2752 4005 5.863935 TGAGAGAGTGAAACGTAACATCATG 59.136 40.000 0.00 0.00 45.86 3.07
2763 4016 6.165659 ACGTAACATCATGAGTAAGTTTGC 57.834 37.500 0.09 0.90 0.00 3.68
2878 4131 2.428171 GGCAAGCATCCAGATAGCAAAA 59.572 45.455 0.00 0.00 0.00 2.44
2886 4139 6.830324 AGCATCCAGATAGCAAAATTGAAGTA 59.170 34.615 0.00 0.00 0.00 2.24
3036 4291 9.499479 AATATTCATACACTTTCTATCAGCCTG 57.501 33.333 0.00 0.00 0.00 4.85
3079 4334 1.658095 CAACCACCACAAGTTTTTGCG 59.342 47.619 0.00 0.00 37.85 4.85
3500 4755 4.371786 TCTGCGCTCTGAGGTATTAAATG 58.628 43.478 9.73 0.00 0.00 2.32
3507 4762 6.923508 CGCTCTGAGGTATTAAATGTCATACA 59.076 38.462 6.83 0.00 0.00 2.29
3551 4806 7.587629 CAACATAATACATTCTGGGTATGCTG 58.412 38.462 0.00 0.00 32.06 4.41
3591 4846 6.695713 TGAATTATCCACTTCTGTTATCGACG 59.304 38.462 0.00 0.00 0.00 5.12
4269 5544 2.106684 GTTGGTTCTCAGTCCCCTTCTT 59.893 50.000 0.00 0.00 0.00 2.52
4430 5705 6.182627 TCATTCTGAACATTACTGCTTGGAT 58.817 36.000 0.00 0.00 0.00 3.41
4442 5717 8.680903 CATTACTGCTTGGATCATTTAAGAAGT 58.319 33.333 13.23 13.23 41.82 3.01
4447 5722 6.942005 TGCTTGGATCATTTAAGAAGTCTGAA 59.058 34.615 0.00 0.00 0.00 3.02
4954 6232 2.060980 GCGGTCCAGGAGATCCACT 61.061 63.158 0.92 0.00 38.89 4.00
4964 6242 2.982488 AGGAGATCCACTTGTTCTTGGT 59.018 45.455 0.92 0.00 38.89 3.67
5440 6782 1.079405 GATCAAGTTCCCGCCGTCA 60.079 57.895 0.00 0.00 0.00 4.35
5508 6850 4.719369 GTCGCCGTCACCGCTTCT 62.719 66.667 0.00 0.00 0.00 2.85
6441 7809 2.487934 CTTCTAGCAGCGCCATAACAT 58.512 47.619 2.29 0.00 0.00 2.71
6442 7810 2.620251 TCTAGCAGCGCCATAACATT 57.380 45.000 2.29 0.00 0.00 2.71
6447 7815 1.400142 GCAGCGCCATAACATTACACA 59.600 47.619 2.29 0.00 0.00 3.72
6450 7818 3.078097 AGCGCCATAACATTACACAACA 58.922 40.909 2.29 0.00 0.00 3.33
6451 7819 3.119990 AGCGCCATAACATTACACAACAC 60.120 43.478 2.29 0.00 0.00 3.32
6460 7828 5.835113 ACATTACACAACACAAGCTTTCT 57.165 34.783 0.00 0.00 0.00 2.52
6542 7910 7.495934 AGCTAGTGCATGTACTAACATAAAAGG 59.504 37.037 21.85 9.99 44.70 3.11
6580 7948 8.803201 ATAATGTGTCGAGTACAATCACTATG 57.197 34.615 6.54 0.00 40.63 2.23
6581 7949 5.638596 TGTGTCGAGTACAATCACTATGT 57.361 39.130 0.00 0.00 40.63 2.29
6582 7950 6.020971 TGTGTCGAGTACAATCACTATGTT 57.979 37.500 0.00 0.00 40.63 2.71
6583 7951 5.861787 TGTGTCGAGTACAATCACTATGTTG 59.138 40.000 0.00 0.00 40.63 3.33
6584 7952 5.862323 GTGTCGAGTACAATCACTATGTTGT 59.138 40.000 0.00 0.00 40.63 3.32
6585 7953 7.025365 GTGTCGAGTACAATCACTATGTTGTA 58.975 38.462 0.00 0.00 40.63 2.41
6586 7954 7.218393 GTGTCGAGTACAATCACTATGTTGTAG 59.782 40.741 0.00 0.00 40.37 2.74
6587 7955 7.094506 TGTCGAGTACAATCACTATGTTGTAGT 60.095 37.037 5.55 5.55 43.49 2.73
6588 7956 8.393366 GTCGAGTACAATCACTATGTTGTAGTA 58.607 37.037 0.00 0.00 41.85 1.82
6589 7957 8.949177 TCGAGTACAATCACTATGTTGTAGTAA 58.051 33.333 0.00 0.00 41.85 2.24
6590 7958 9.007252 CGAGTACAATCACTATGTTGTAGTAAC 57.993 37.037 0.00 0.00 41.85 2.50
6591 7959 9.298774 GAGTACAATCACTATGTTGTAGTAACC 57.701 37.037 0.00 0.00 41.85 2.85
6592 7960 9.032624 AGTACAATCACTATGTTGTAGTAACCT 57.967 33.333 0.00 0.00 40.70 3.50
6593 7961 9.084164 GTACAATCACTATGTTGTAGTAACCTG 57.916 37.037 0.00 0.00 40.37 4.00
6594 7962 6.594159 ACAATCACTATGTTGTAGTAACCTGC 59.406 38.462 0.00 0.00 36.83 4.85
6595 7963 5.995565 TCACTATGTTGTAGTAACCTGCT 57.004 39.130 0.00 0.00 0.00 4.24
6596 7964 5.720202 TCACTATGTTGTAGTAACCTGCTG 58.280 41.667 0.00 0.00 0.00 4.41
6597 7965 4.870426 CACTATGTTGTAGTAACCTGCTGG 59.130 45.833 8.29 8.29 39.83 4.85
6606 7974 3.906980 ACCTGCTGGTTGGTAGCT 58.093 55.556 9.88 0.00 46.05 3.32
6607 7975 2.155065 ACCTGCTGGTTGGTAGCTT 58.845 52.632 9.88 0.00 46.05 3.74
6608 7976 0.250901 ACCTGCTGGTTGGTAGCTTG 60.251 55.000 9.88 0.00 46.05 4.01
6609 7977 0.250901 CCTGCTGGTTGGTAGCTTGT 60.251 55.000 0.51 0.00 41.66 3.16
6610 7978 1.003118 CCTGCTGGTTGGTAGCTTGTA 59.997 52.381 0.51 0.00 41.66 2.41
6611 7979 2.356125 CCTGCTGGTTGGTAGCTTGTAT 60.356 50.000 0.51 0.00 41.66 2.29
6612 7980 2.939103 CTGCTGGTTGGTAGCTTGTATC 59.061 50.000 0.00 0.00 41.66 2.24
6613 7981 2.304470 TGCTGGTTGGTAGCTTGTATCA 59.696 45.455 0.00 0.00 41.66 2.15
6614 7982 2.678336 GCTGGTTGGTAGCTTGTATCAC 59.322 50.000 0.00 0.00 38.14 3.06
6615 7983 3.619979 GCTGGTTGGTAGCTTGTATCACT 60.620 47.826 0.00 0.00 38.14 3.41
6616 7984 4.382685 GCTGGTTGGTAGCTTGTATCACTA 60.383 45.833 0.00 0.00 38.14 2.74
6617 7985 5.685075 GCTGGTTGGTAGCTTGTATCACTAT 60.685 44.000 0.00 0.00 38.14 2.12
6618 7986 5.670485 TGGTTGGTAGCTTGTATCACTATG 58.330 41.667 0.00 0.00 0.00 2.23
6619 7987 5.188948 TGGTTGGTAGCTTGTATCACTATGT 59.811 40.000 0.00 0.00 0.00 2.29
6620 7988 6.381707 TGGTTGGTAGCTTGTATCACTATGTA 59.618 38.462 0.00 0.00 0.00 2.29
6621 7989 7.093245 TGGTTGGTAGCTTGTATCACTATGTAA 60.093 37.037 0.00 0.00 0.00 2.41
6622 7990 7.931948 GGTTGGTAGCTTGTATCACTATGTAAT 59.068 37.037 0.00 0.00 0.00 1.89
6623 7991 9.976511 GTTGGTAGCTTGTATCACTATGTAATA 57.023 33.333 0.00 0.00 0.00 0.98
6624 7992 9.976511 TTGGTAGCTTGTATCACTATGTAATAC 57.023 33.333 0.00 0.00 0.00 1.89
6625 7993 9.363401 TGGTAGCTTGTATCACTATGTAATACT 57.637 33.333 0.00 0.00 0.00 2.12
6649 8017 9.770097 ACTATTGGTTCAAGTATCTATGACATG 57.230 33.333 0.00 0.00 0.00 3.21
6650 8018 9.987272 CTATTGGTTCAAGTATCTATGACATGA 57.013 33.333 0.00 0.00 0.00 3.07
6652 8020 8.722480 TTGGTTCAAGTATCTATGACATGAAG 57.278 34.615 0.00 0.00 35.76 3.02
6653 8021 7.851228 TGGTTCAAGTATCTATGACATGAAGT 58.149 34.615 0.00 0.00 35.76 3.01
6654 8022 8.321353 TGGTTCAAGTATCTATGACATGAAGTT 58.679 33.333 0.00 0.00 35.76 2.66
6655 8023 9.167311 GGTTCAAGTATCTATGACATGAAGTTT 57.833 33.333 0.00 0.00 35.76 2.66
6670 8038 9.994432 GACATGAAGTTTCTATTTTATGTCTGG 57.006 33.333 0.00 0.00 39.77 3.86
6671 8039 8.462016 ACATGAAGTTTCTATTTTATGTCTGGC 58.538 33.333 0.00 0.00 0.00 4.85
6672 8040 7.994425 TGAAGTTTCTATTTTATGTCTGGCA 57.006 32.000 0.00 0.00 0.00 4.92
6673 8041 7.816640 TGAAGTTTCTATTTTATGTCTGGCAC 58.183 34.615 0.00 0.00 0.00 5.01
6674 8042 7.665559 TGAAGTTTCTATTTTATGTCTGGCACT 59.334 33.333 0.00 0.00 0.00 4.40
6675 8043 7.617041 AGTTTCTATTTTATGTCTGGCACTC 57.383 36.000 0.00 0.00 0.00 3.51
6676 8044 7.398024 AGTTTCTATTTTATGTCTGGCACTCT 58.602 34.615 0.00 0.00 0.00 3.24
6677 8045 7.335422 AGTTTCTATTTTATGTCTGGCACTCTG 59.665 37.037 0.00 0.00 0.00 3.35
6678 8046 5.118990 TCTATTTTATGTCTGGCACTCTGC 58.881 41.667 0.00 0.00 44.08 4.26
6696 8064 8.832487 CACTCTGCATAGTGTATTTTTCATTC 57.168 34.615 20.90 0.00 41.63 2.67
6697 8065 8.671921 CACTCTGCATAGTGTATTTTTCATTCT 58.328 33.333 20.90 0.00 41.63 2.40
6698 8066 9.890629 ACTCTGCATAGTGTATTTTTCATTCTA 57.109 29.630 3.60 0.00 0.00 2.10
6711 8079 8.947055 ATTTTTCATTCTATATTTGTGCCCAC 57.053 30.769 0.00 0.00 0.00 4.61
6712 8080 5.749596 TTCATTCTATATTTGTGCCCACG 57.250 39.130 0.00 0.00 0.00 4.94
6713 8081 4.776349 TCATTCTATATTTGTGCCCACGT 58.224 39.130 0.00 0.00 0.00 4.49
6714 8082 5.189928 TCATTCTATATTTGTGCCCACGTT 58.810 37.500 0.00 0.00 0.00 3.99
6715 8083 5.650266 TCATTCTATATTTGTGCCCACGTTT 59.350 36.000 0.00 0.00 0.00 3.60
6716 8084 5.968528 TTCTATATTTGTGCCCACGTTTT 57.031 34.783 0.00 0.00 0.00 2.43
6717 8085 5.968528 TCTATATTTGTGCCCACGTTTTT 57.031 34.783 0.00 0.00 0.00 1.94
6740 8108 6.668541 TTCTGAGCAATAACATCAGTTAGC 57.331 37.500 1.75 0.00 43.02 3.09
6741 8109 5.982356 TCTGAGCAATAACATCAGTTAGCT 58.018 37.500 0.00 0.00 43.02 3.32
6742 8110 7.112452 TCTGAGCAATAACATCAGTTAGCTA 57.888 36.000 0.00 0.00 43.02 3.32
6743 8111 7.205992 TCTGAGCAATAACATCAGTTAGCTAG 58.794 38.462 0.00 0.00 43.02 3.42
6744 8112 6.878317 TGAGCAATAACATCAGTTAGCTAGT 58.122 36.000 0.00 0.00 43.02 2.57
6745 8113 6.758416 TGAGCAATAACATCAGTTAGCTAGTG 59.242 38.462 0.00 0.00 43.02 2.74
6746 8114 5.525378 AGCAATAACATCAGTTAGCTAGTGC 59.475 40.000 0.00 0.00 43.02 4.40
6747 8115 5.294306 GCAATAACATCAGTTAGCTAGTGCA 59.706 40.000 0.00 0.00 43.02 4.57
6748 8116 6.017605 GCAATAACATCAGTTAGCTAGTGCAT 60.018 38.462 0.00 0.00 43.02 3.96
6749 8117 7.350467 CAATAACATCAGTTAGCTAGTGCATG 58.650 38.462 0.00 5.21 43.02 4.06
6750 8118 4.478206 ACATCAGTTAGCTAGTGCATGT 57.522 40.909 0.00 5.73 42.74 3.21
6751 8119 5.598416 ACATCAGTTAGCTAGTGCATGTA 57.402 39.130 14.57 0.00 42.74 2.29
6752 8120 5.352284 ACATCAGTTAGCTAGTGCATGTAC 58.648 41.667 5.71 5.71 42.74 2.90
6753 8121 5.127845 ACATCAGTTAGCTAGTGCATGTACT 59.872 40.000 20.58 20.58 42.74 2.73
6754 8122 6.321435 ACATCAGTTAGCTAGTGCATGTACTA 59.679 38.462 20.61 20.61 42.74 1.82
6755 8123 6.769134 TCAGTTAGCTAGTGCATGTACTAA 57.231 37.500 21.85 8.65 42.74 2.24
6756 8124 6.561614 TCAGTTAGCTAGTGCATGTACTAAC 58.438 40.000 21.85 18.09 42.74 2.34
6757 8125 6.152154 TCAGTTAGCTAGTGCATGTACTAACA 59.848 38.462 21.85 9.24 41.06 2.41
6759 8127 8.135529 CAGTTAGCTAGTGCATGTACTAACATA 58.864 37.037 21.85 12.99 44.70 2.29
6760 8128 8.692710 AGTTAGCTAGTGCATGTACTAACATAA 58.307 33.333 21.85 16.96 44.70 1.90
6761 8129 9.309516 GTTAGCTAGTGCATGTACTAACATAAA 57.690 33.333 21.85 11.89 44.70 1.40
6762 8130 9.878667 TTAGCTAGTGCATGTACTAACATAAAA 57.121 29.630 21.85 9.94 44.70 1.52
6763 8131 8.425577 AGCTAGTGCATGTACTAACATAAAAG 57.574 34.615 21.85 12.11 44.70 2.27
6764 8132 7.495934 AGCTAGTGCATGTACTAACATAAAAGG 59.504 37.037 21.85 9.99 44.70 3.11
6765 8133 7.280205 GCTAGTGCATGTACTAACATAAAAGGT 59.720 37.037 21.85 0.00 44.70 3.50
6766 8134 7.996098 AGTGCATGTACTAACATAAAAGGTT 57.004 32.000 15.40 0.00 44.70 3.50
6767 8135 8.040716 AGTGCATGTACTAACATAAAAGGTTC 57.959 34.615 15.40 0.00 44.70 3.62
6768 8136 7.883311 AGTGCATGTACTAACATAAAAGGTTCT 59.117 33.333 15.40 0.00 44.70 3.01
6769 8137 9.158233 GTGCATGTACTAACATAAAAGGTTCTA 57.842 33.333 6.69 0.00 44.70 2.10
6770 8138 9.899661 TGCATGTACTAACATAAAAGGTTCTAT 57.100 29.630 0.00 0.00 44.70 1.98
6815 8183 9.084164 GTACAATCACTATGTTGTAGTAACCTG 57.916 37.037 0.00 0.00 40.37 4.00
6840 8208 5.298347 GGGTTGGTAGCTTGTATCACTATC 58.702 45.833 0.00 0.00 0.00 2.08
6842 8210 6.267014 GGGTTGGTAGCTTGTATCACTATCTA 59.733 42.308 0.00 0.00 0.00 1.98
6844 8212 8.368668 GGTTGGTAGCTTGTATCACTATCTAAT 58.631 37.037 0.00 0.00 0.00 1.73
7054 8422 8.624776 GGATTATGGACAAGGTAATCTTTTCTG 58.375 37.037 0.00 0.00 35.92 3.02
7121 8489 3.753294 TCCTCCAGTCAGAACAAACTC 57.247 47.619 0.00 0.00 0.00 3.01
7164 8532 7.172532 GTGTGGACAAACTTGATCAGTGTATTA 59.827 37.037 0.00 0.00 35.12 0.98
7270 8698 0.676184 TGGCTCAGAGTCTCACACAC 59.324 55.000 3.09 0.00 0.00 3.82
7287 8715 4.024048 CACACACCCTGTACAGATTGAAAC 60.024 45.833 24.68 0.00 0.00 2.78
7323 8751 7.292120 AGAGAAGAGAAGCCAGTTGGAATATAT 59.708 37.037 1.45 0.00 37.39 0.86
7437 8865 4.737765 CCGTGTGTTTTGAACAATAGTTGG 59.262 41.667 0.00 0.00 44.16 3.77
7462 8890 5.643379 TCCTCCAAAATGTGTATGAAAGC 57.357 39.130 0.00 0.00 0.00 3.51
7542 8971 1.920351 TGGGACCTTAGATTTCACCCC 59.080 52.381 0.00 0.00 35.48 4.95
7630 9060 8.586879 AGGAATTTTCTTTGAGAATAGGAAGG 57.413 34.615 0.00 0.00 33.67 3.46
7710 9140 6.153340 TGAAGGAATTTAAGATTCTGGCAAGG 59.847 38.462 0.00 0.00 0.00 3.61
7730 9160 5.514500 AGGGGCAACTTTAGAAATACTCA 57.486 39.130 0.00 0.00 0.00 3.41
8290 9734 2.969821 AGGTTCAGTGGCATGGTTAA 57.030 45.000 0.00 0.00 0.00 2.01
8428 9876 9.095065 ACAGCTATTTTATTCTGTAAACTACCG 57.905 33.333 0.00 0.00 37.94 4.02
8429 9877 8.062448 CAGCTATTTTATTCTGTAAACTACCGC 58.938 37.037 0.00 0.00 0.00 5.68
8430 9878 7.226128 AGCTATTTTATTCTGTAAACTACCGCC 59.774 37.037 0.00 0.00 0.00 6.13
8431 9879 7.226128 GCTATTTTATTCTGTAAACTACCGCCT 59.774 37.037 0.00 0.00 0.00 5.52
8432 9880 7.933215 ATTTTATTCTGTAAACTACCGCCTT 57.067 32.000 0.00 0.00 0.00 4.35
8433 9881 6.730960 TTTATTCTGTAAACTACCGCCTTG 57.269 37.500 0.00 0.00 0.00 3.61
8434 9882 2.088950 TCTGTAAACTACCGCCTTGC 57.911 50.000 0.00 0.00 0.00 4.01
8435 9883 1.345089 TCTGTAAACTACCGCCTTGCA 59.655 47.619 0.00 0.00 0.00 4.08
8436 9884 2.027561 TCTGTAAACTACCGCCTTGCAT 60.028 45.455 0.00 0.00 0.00 3.96
8574 10029 1.148310 CGGCTTGACGATGAAGTTGT 58.852 50.000 0.00 0.00 35.47 3.32
8590 10045 3.596214 AGTTGTTCATTACGCCTACAGG 58.404 45.455 0.00 0.00 38.53 4.00
8674 10131 8.472007 TGTTACCCTTTTTCATCTTTATGTGT 57.528 30.769 0.00 0.00 34.50 3.72
8771 10279 2.590821 ACAAGTCAGCATTCCAGCTTT 58.409 42.857 0.00 0.00 43.70 3.51
8782 10290 0.597568 TCCAGCTTTGCATTTCCACG 59.402 50.000 0.00 0.00 0.00 4.94
8807 10315 7.377928 CGAAAGAATAAATCATGCAAGATGGAC 59.622 37.037 4.99 0.00 0.00 4.02
8808 10316 7.893124 AAGAATAAATCATGCAAGATGGACT 57.107 32.000 4.99 0.00 0.00 3.85
8834 10346 8.635765 ATTTATCTGTTGTGTTTCCTGTGTAT 57.364 30.769 0.00 0.00 0.00 2.29
8840 10352 7.387673 TCTGTTGTGTTTCCTGTGTATATCTTG 59.612 37.037 0.00 0.00 0.00 3.02
8907 10419 4.051237 CCGACAGAATAAGCGATTGATGA 58.949 43.478 0.00 0.00 0.00 2.92
8909 10421 5.427082 CGACAGAATAAGCGATTGATGAAC 58.573 41.667 0.00 0.00 0.00 3.18
8910 10422 5.557136 CGACAGAATAAGCGATTGATGAACC 60.557 44.000 0.00 0.00 0.00 3.62
8911 10423 5.431765 ACAGAATAAGCGATTGATGAACCT 58.568 37.500 0.00 0.00 0.00 3.50
8912 10424 5.882557 ACAGAATAAGCGATTGATGAACCTT 59.117 36.000 0.00 0.00 0.00 3.50
8913 10425 6.183360 ACAGAATAAGCGATTGATGAACCTTG 60.183 38.462 0.00 0.00 0.00 3.61
8914 10426 6.037500 CAGAATAAGCGATTGATGAACCTTGA 59.962 38.462 0.00 0.00 0.00 3.02
8915 10427 6.599244 AGAATAAGCGATTGATGAACCTTGAA 59.401 34.615 0.00 0.00 0.00 2.69
8916 10428 4.425577 AAGCGATTGATGAACCTTGAAC 57.574 40.909 0.00 0.00 0.00 3.18
8917 10429 3.411446 AGCGATTGATGAACCTTGAACA 58.589 40.909 0.00 0.00 0.00 3.18
8918 10430 3.820467 AGCGATTGATGAACCTTGAACAA 59.180 39.130 0.00 0.00 0.00 2.83
8919 10431 4.278170 AGCGATTGATGAACCTTGAACAAA 59.722 37.500 0.00 0.00 0.00 2.83
8920 10432 4.382754 GCGATTGATGAACCTTGAACAAAC 59.617 41.667 0.00 0.00 0.00 2.93
8927 10479 5.323371 TGAACCTTGAACAAACAGAAAGG 57.677 39.130 0.00 0.00 42.57 3.11
8970 10525 6.425577 TGAACACCTTACAAGTTACAACAC 57.574 37.500 0.00 0.00 0.00 3.32
9023 10586 4.582240 TGTGCACCAGAATTACAATGTTCA 59.418 37.500 15.69 0.00 0.00 3.18
9028 10591 6.127758 GCACCAGAATTACAATGTTCACCATA 60.128 38.462 0.00 0.00 31.97 2.74
9029 10592 7.576666 GCACCAGAATTACAATGTTCACCATAA 60.577 37.037 0.00 0.00 31.97 1.90
9035 10626 8.810652 AATTACAATGTTCACCATAACACAAC 57.189 30.769 0.00 0.00 41.89 3.32
9056 10647 3.684788 ACGACATTGCCTATTCAAGACAC 59.315 43.478 0.00 0.00 0.00 3.67
9057 10648 3.684305 CGACATTGCCTATTCAAGACACA 59.316 43.478 0.00 0.00 0.00 3.72
9058 10649 4.436050 CGACATTGCCTATTCAAGACACAC 60.436 45.833 0.00 0.00 0.00 3.82
9059 10650 3.758554 ACATTGCCTATTCAAGACACACC 59.241 43.478 0.00 0.00 0.00 4.16
9074 10673 5.630121 AGACACACCATAACCAGATTTTGA 58.370 37.500 0.00 0.00 0.00 2.69
9103 10702 9.686683 AAAAACATTGGAAGTACTATAGCATCT 57.313 29.630 0.00 0.00 0.00 2.90
9104 10703 9.686683 AAAACATTGGAAGTACTATAGCATCTT 57.313 29.630 0.00 2.26 0.00 2.40
9146 10745 5.335976 CCTTCAGGCCTTACAAAAGACATTC 60.336 44.000 0.00 0.00 34.37 2.67
9161 10760 3.264450 AGACATTCCCTTCGACCTTGAAT 59.736 43.478 0.00 0.00 0.00 2.57
9177 10776 9.261180 CGACCTTGAATAAGACATACAACATAT 57.739 33.333 0.00 0.00 35.92 1.78
9228 10849 3.150848 GTGTACATCACTCAGATCGCA 57.849 47.619 0.00 0.00 43.13 5.10
9264 10885 1.339055 CCGTTGAGAAAGCCATCTGGA 60.339 52.381 0.00 0.00 37.39 3.86
9299 10920 5.935789 CCAAGAATCCAATGAACTGCAAAAT 59.064 36.000 0.00 0.00 0.00 1.82
9451 11073 9.246670 TCTCATCTTGTGATCCAAATTTGTATT 57.753 29.630 16.73 1.27 35.97 1.89
9516 11138 4.877378 ATCAAATGTGTCATGTGCCTTT 57.123 36.364 0.00 0.00 0.00 3.11
9559 11181 9.232082 GGTTTTCAAATTCAAGTTAAATTTGGC 57.768 29.630 19.61 10.42 46.65 4.52
9580 11203 7.185318 TGGCACCATTTTGATTTTCATATCT 57.815 32.000 0.00 0.00 0.00 1.98
9586 11209 7.092757 ACCATTTTGATTTTCATATCTGGGCTT 60.093 33.333 0.00 0.00 0.00 4.35
9730 11356 7.180229 TCTGATTTGTACATAAGACAGGGAAGA 59.820 37.037 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
181 1162 2.984562 TCGCAGACATAATGAAAGGCA 58.015 42.857 0.00 0.00 0.00 4.75
260 1246 7.668052 TCCAACCATAAACTAAAACTGCAGTAT 59.332 33.333 22.01 14.85 0.00 2.12
262 1248 5.830991 TCCAACCATAAACTAAAACTGCAGT 59.169 36.000 15.25 15.25 0.00 4.40
339 1511 4.582869 TGCATCAGACATAAAAGAGCTGT 58.417 39.130 0.00 0.00 0.00 4.40
499 1693 2.496899 AAAGATCGCACCCAGACATT 57.503 45.000 0.00 0.00 0.00 2.71
501 1695 2.270352 AAAAAGATCGCACCCAGACA 57.730 45.000 0.00 0.00 0.00 3.41
546 1740 8.849168 ACTATCAAAACAATCATTGACAGAACA 58.151 29.630 3.79 0.00 38.29 3.18
622 1816 8.786826 AGTACTCCATGAAATTTAACATCGAA 57.213 30.769 0.00 0.00 0.00 3.71
740 1939 7.859377 TGTGAAACTAAAGTCAAGTAGTACGAG 59.141 37.037 0.00 0.00 38.04 4.18
746 1945 5.179555 GCCCTGTGAAACTAAAGTCAAGTAG 59.820 44.000 0.00 0.00 38.04 2.57
819 2018 6.415280 CGATCCGGATTTCTTATATCATCGTC 59.585 42.308 20.22 0.00 0.00 4.20
821 2020 6.266323 ACGATCCGGATTTCTTATATCATCG 58.734 40.000 20.22 15.54 34.38 3.84
936 2135 6.159988 GCTGTTTTGATGTGACTAGTAGACT 58.840 40.000 3.59 0.00 0.00 3.24
939 2138 5.161358 TCGCTGTTTTGATGTGACTAGTAG 58.839 41.667 0.00 0.00 0.00 2.57
940 2139 5.048294 TCTCGCTGTTTTGATGTGACTAGTA 60.048 40.000 0.00 0.00 0.00 1.82
941 2140 3.990092 TCGCTGTTTTGATGTGACTAGT 58.010 40.909 0.00 0.00 0.00 2.57
942 2141 4.237724 TCTCGCTGTTTTGATGTGACTAG 58.762 43.478 0.00 0.00 0.00 2.57
943 2142 4.022329 TCTCTCGCTGTTTTGATGTGACTA 60.022 41.667 0.00 0.00 0.00 2.59
944 2143 3.062763 CTCTCGCTGTTTTGATGTGACT 58.937 45.455 0.00 0.00 0.00 3.41
945 2144 3.059884 TCTCTCGCTGTTTTGATGTGAC 58.940 45.455 0.00 0.00 0.00 3.67
975 2174 0.108615 CGGCGTGTTCTCTGAATCCT 60.109 55.000 0.00 0.00 0.00 3.24
976 2175 1.696832 GCGGCGTGTTCTCTGAATCC 61.697 60.000 9.37 0.00 0.00 3.01
977 2176 1.696832 GGCGGCGTGTTCTCTGAATC 61.697 60.000 9.37 0.00 0.00 2.52
978 2177 1.741770 GGCGGCGTGTTCTCTGAAT 60.742 57.895 9.37 0.00 0.00 2.57
979 2178 2.357034 GGCGGCGTGTTCTCTGAA 60.357 61.111 9.37 0.00 0.00 3.02
980 2179 4.717629 CGGCGGCGTGTTCTCTGA 62.718 66.667 24.74 0.00 0.00 3.27
1069 2268 0.742635 CTTGAAGAGGAGGAAGGCGC 60.743 60.000 0.00 0.00 0.00 6.53
1112 2311 3.701604 GAGAATGGAGACGCGGCGT 62.702 63.158 29.85 29.85 45.10 5.68
1514 2717 1.726791 CACGACAAGAGGGTGAAATCG 59.273 52.381 0.00 0.00 33.58 3.34
1559 2762 0.030638 CAACACCAACCTTGCCTTCG 59.969 55.000 0.00 0.00 0.00 3.79
1562 2765 1.206849 CAAACAACACCAACCTTGCCT 59.793 47.619 0.00 0.00 0.00 4.75
1570 2773 0.459489 GGAGCAGCAAACAACACCAA 59.541 50.000 0.00 0.00 0.00 3.67
1710 2918 4.008074 TCACCCAATTGAAGAGACAGAC 57.992 45.455 7.12 0.00 0.00 3.51
1714 2922 6.331369 TGAAATTCACCCAATTGAAGAGAC 57.669 37.500 7.12 0.00 38.87 3.36
1721 2929 3.847542 TGCGATGAAATTCACCCAATTG 58.152 40.909 0.00 0.00 34.69 2.32
1803 3023 8.037758 AGTCATAAATCACAACCACAACAAAAA 58.962 29.630 0.00 0.00 0.00 1.94
1993 3225 9.647918 TGATTCTTCCTCTGTCTATAACTACAT 57.352 33.333 0.00 0.00 0.00 2.29
2050 3286 7.721399 GTCCAATGGTAAAATCACTATCCTCAT 59.279 37.037 0.00 0.00 0.00 2.90
2053 3289 6.969043 TGTCCAATGGTAAAATCACTATCCT 58.031 36.000 0.00 0.00 0.00 3.24
2054 3290 6.828785 ACTGTCCAATGGTAAAATCACTATCC 59.171 38.462 0.00 0.00 0.00 2.59
2055 3291 7.201732 CCACTGTCCAATGGTAAAATCACTATC 60.202 40.741 0.00 0.00 0.00 2.08
2057 3293 5.943416 CCACTGTCCAATGGTAAAATCACTA 59.057 40.000 0.00 0.00 0.00 2.74
2058 3294 4.766891 CCACTGTCCAATGGTAAAATCACT 59.233 41.667 0.00 0.00 0.00 3.41
2115 3351 7.041107 GCATGGCAGATAAAACTGGAAATAAA 58.959 34.615 0.00 0.00 38.22 1.40
2118 3354 4.713321 AGCATGGCAGATAAAACTGGAAAT 59.287 37.500 0.00 0.00 38.22 2.17
2157 3394 8.170730 ACAAGGTTTCTCAAATATAAGGTTCCT 58.829 33.333 0.00 0.00 0.00 3.36
2196 3433 2.463876 GCACCAAAGTTCTCAAAGCAC 58.536 47.619 0.00 0.00 0.00 4.40
2201 3438 1.317613 ATGCGCACCAAAGTTCTCAA 58.682 45.000 14.90 0.00 0.00 3.02
2216 3453 7.308435 TGTCATTACAGATCTACAGATATGCG 58.692 38.462 12.58 1.74 44.99 4.73
2296 3541 9.146984 CTTTCTGTATTACCGTTCACTGATTAA 57.853 33.333 0.00 0.00 0.00 1.40
2449 3694 5.442391 AGGCAGACACTAAACCTACAAAAA 58.558 37.500 0.00 0.00 0.00 1.94
2511 3756 7.875041 CGAAAGTGATCCATGAATAGGTTCTAT 59.125 37.037 0.00 0.00 35.33 1.98
2638 3891 2.755103 CTCCCCTGGCATTACAAGAAAC 59.245 50.000 0.00 0.00 0.00 2.78
2752 4005 6.751888 ACAACATGAGTTTTGCAAACTTACTC 59.248 34.615 25.50 25.50 35.28 2.59
2763 4016 7.118390 CCCTACTAGAAGACAACATGAGTTTTG 59.882 40.741 0.00 0.00 35.28 2.44
2886 4139 8.617491 TCATCAGATGATAAATCCATGGGTAAT 58.383 33.333 13.02 1.68 33.59 1.89
3036 4291 6.875076 TGTGTAGCTAGACTAAAAGGGATTC 58.125 40.000 20.52 0.00 30.90 2.52
3185 4440 1.779569 AGCAGGAAGTTACGTTGTCG 58.220 50.000 0.00 0.00 43.34 4.35
3269 4524 3.318839 CCAACATGAAAGGTGCAAGAAGA 59.681 43.478 0.00 0.00 0.00 2.87
3660 4915 5.330233 TCTACAGAGAACCATCTAACCACA 58.670 41.667 0.00 0.00 35.54 4.17
3944 5199 4.365514 TGGAAATAAGCACTGAGGTGAA 57.634 40.909 0.00 0.00 45.61 3.18
4059 5331 5.772169 TGTTCAACACATGTGGGATGAAATA 59.228 36.000 29.45 22.64 35.32 1.40
4061 5333 3.956848 TGTTCAACACATGTGGGATGAAA 59.043 39.130 29.45 21.41 35.32 2.69
4193 5467 2.285256 CGTGAGCAGAATGTGATAACGC 60.285 50.000 0.00 0.00 39.31 4.84
4954 6232 1.719529 TAGGACCCGACCAAGAACAA 58.280 50.000 0.00 0.00 0.00 2.83
5406 6748 1.123928 GATCTGGTGGATCGGGACTT 58.876 55.000 0.00 0.00 40.99 3.01
5440 6782 2.933287 TGGGGAAGCGGTGATGGT 60.933 61.111 0.00 0.00 0.00 3.55
5508 6850 0.750850 GCGGGTAGTGATCCAAGCTA 59.249 55.000 0.00 0.00 0.00 3.32
6441 7809 7.255104 CCATTAGAGAAAGCTTGTGTTGTGTAA 60.255 37.037 0.00 0.00 0.00 2.41
6442 7810 6.204688 CCATTAGAGAAAGCTTGTGTTGTGTA 59.795 38.462 0.00 0.00 0.00 2.90
6447 7815 5.649831 GGATCCATTAGAGAAAGCTTGTGTT 59.350 40.000 6.95 0.00 0.00 3.32
6450 7818 5.707066 AGGATCCATTAGAGAAAGCTTGT 57.293 39.130 15.82 0.00 0.00 3.16
6451 7819 6.118170 TCAAGGATCCATTAGAGAAAGCTTG 58.882 40.000 15.82 4.90 0.00 4.01
6460 7828 6.071952 GCACAAAGTTTCAAGGATCCATTAGA 60.072 38.462 15.82 2.85 0.00 2.10
6564 7932 9.007252 GTTACTACAACATAGTGATTGTACTCG 57.993 37.037 0.00 0.00 39.67 4.18
6565 7933 9.298774 GGTTACTACAACATAGTGATTGTACTC 57.701 37.037 0.00 0.00 39.67 2.59
6575 7943 5.086104 CCAGCAGGTTACTACAACATAGT 57.914 43.478 0.00 0.00 0.00 2.12
6590 7958 0.250901 ACAAGCTACCAACCAGCAGG 60.251 55.000 0.00 0.00 41.66 4.85
6591 7959 2.472695 TACAAGCTACCAACCAGCAG 57.527 50.000 0.00 0.00 41.66 4.24
6592 7960 2.304470 TGATACAAGCTACCAACCAGCA 59.696 45.455 0.00 0.00 41.66 4.41
6593 7961 2.678336 GTGATACAAGCTACCAACCAGC 59.322 50.000 0.00 0.00 39.41 4.85
6594 7962 4.207891 AGTGATACAAGCTACCAACCAG 57.792 45.455 0.00 0.00 0.00 4.00
6595 7963 5.188948 ACATAGTGATACAAGCTACCAACCA 59.811 40.000 0.00 0.00 0.00 3.67
6596 7964 5.671493 ACATAGTGATACAAGCTACCAACC 58.329 41.667 0.00 0.00 0.00 3.77
6597 7965 8.888579 ATTACATAGTGATACAAGCTACCAAC 57.111 34.615 0.00 0.00 0.00 3.77
6598 7966 9.976511 GTATTACATAGTGATACAAGCTACCAA 57.023 33.333 7.07 0.00 35.82 3.67
6599 7967 9.363401 AGTATTACATAGTGATACAAGCTACCA 57.637 33.333 12.60 0.00 37.43 3.25
6623 7991 9.770097 CATGTCATAGATACTTGAACCAATAGT 57.230 33.333 0.00 0.00 0.00 2.12
6624 7992 9.987272 TCATGTCATAGATACTTGAACCAATAG 57.013 33.333 0.00 0.00 30.64 1.73
6626 7994 9.334947 CTTCATGTCATAGATACTTGAACCAAT 57.665 33.333 0.00 0.00 36.59 3.16
6627 7995 8.321353 ACTTCATGTCATAGATACTTGAACCAA 58.679 33.333 0.00 0.00 36.59 3.67
6628 7996 7.851228 ACTTCATGTCATAGATACTTGAACCA 58.149 34.615 0.00 0.00 36.59 3.67
6629 7997 8.723942 AACTTCATGTCATAGATACTTGAACC 57.276 34.615 0.00 0.00 36.59 3.62
6644 8012 9.994432 CCAGACATAAAATAGAAACTTCATGTC 57.006 33.333 0.00 0.00 40.69 3.06
6645 8013 8.462016 GCCAGACATAAAATAGAAACTTCATGT 58.538 33.333 0.00 0.00 0.00 3.21
6646 8014 8.461222 TGCCAGACATAAAATAGAAACTTCATG 58.539 33.333 0.00 0.00 0.00 3.07
6647 8015 8.462016 GTGCCAGACATAAAATAGAAACTTCAT 58.538 33.333 0.00 0.00 0.00 2.57
6648 8016 7.665559 AGTGCCAGACATAAAATAGAAACTTCA 59.334 33.333 0.00 0.00 0.00 3.02
6649 8017 8.045176 AGTGCCAGACATAAAATAGAAACTTC 57.955 34.615 0.00 0.00 0.00 3.01
6650 8018 7.885399 AGAGTGCCAGACATAAAATAGAAACTT 59.115 33.333 0.00 0.00 0.00 2.66
6651 8019 7.335422 CAGAGTGCCAGACATAAAATAGAAACT 59.665 37.037 0.00 0.00 0.00 2.66
6652 8020 7.467623 CAGAGTGCCAGACATAAAATAGAAAC 58.532 38.462 0.00 0.00 0.00 2.78
6653 8021 6.094048 GCAGAGTGCCAGACATAAAATAGAAA 59.906 38.462 0.00 0.00 37.42 2.52
6654 8022 5.586243 GCAGAGTGCCAGACATAAAATAGAA 59.414 40.000 0.00 0.00 37.42 2.10
6655 8023 5.118990 GCAGAGTGCCAGACATAAAATAGA 58.881 41.667 0.00 0.00 37.42 1.98
6656 8024 4.877823 TGCAGAGTGCCAGACATAAAATAG 59.122 41.667 0.00 0.00 44.23 1.73
6657 8025 4.842574 TGCAGAGTGCCAGACATAAAATA 58.157 39.130 0.00 0.00 44.23 1.40
6658 8026 3.689347 TGCAGAGTGCCAGACATAAAAT 58.311 40.909 0.00 0.00 44.23 1.82
6659 8027 3.138884 TGCAGAGTGCCAGACATAAAA 57.861 42.857 0.00 0.00 44.23 1.52
6660 8028 2.857186 TGCAGAGTGCCAGACATAAA 57.143 45.000 0.00 0.00 44.23 1.40
6661 8029 3.452264 ACTATGCAGAGTGCCAGACATAA 59.548 43.478 14.34 0.00 44.23 1.90
6662 8030 3.033909 ACTATGCAGAGTGCCAGACATA 58.966 45.455 14.34 0.00 44.23 2.29
6663 8031 1.836166 ACTATGCAGAGTGCCAGACAT 59.164 47.619 14.34 0.00 44.23 3.06
6664 8032 1.066645 CACTATGCAGAGTGCCAGACA 60.067 52.381 26.95 0.00 44.23 3.41
6665 8033 1.649664 CACTATGCAGAGTGCCAGAC 58.350 55.000 26.95 0.00 44.23 3.51
6672 8040 8.798859 AGAATGAAAAATACACTATGCAGAGT 57.201 30.769 8.51 8.51 0.00 3.24
6686 8054 7.706179 CGTGGGCACAAATATAGAATGAAAAAT 59.294 33.333 0.00 0.00 0.00 1.82
6687 8055 7.032580 CGTGGGCACAAATATAGAATGAAAAA 58.967 34.615 0.00 0.00 0.00 1.94
6688 8056 6.151985 ACGTGGGCACAAATATAGAATGAAAA 59.848 34.615 0.00 0.00 0.00 2.29
6689 8057 5.650266 ACGTGGGCACAAATATAGAATGAAA 59.350 36.000 0.00 0.00 0.00 2.69
6690 8058 5.189928 ACGTGGGCACAAATATAGAATGAA 58.810 37.500 0.00 0.00 0.00 2.57
6691 8059 4.776349 ACGTGGGCACAAATATAGAATGA 58.224 39.130 0.00 0.00 0.00 2.57
6692 8060 5.499139 AACGTGGGCACAAATATAGAATG 57.501 39.130 0.00 0.00 0.00 2.67
6693 8061 6.524101 AAAACGTGGGCACAAATATAGAAT 57.476 33.333 0.00 0.00 0.00 2.40
6694 8062 5.968528 AAAACGTGGGCACAAATATAGAA 57.031 34.783 0.00 0.00 0.00 2.10
6695 8063 5.968528 AAAAACGTGGGCACAAATATAGA 57.031 34.783 0.00 0.00 0.00 1.98
6714 8082 8.023128 GCTAACTGATGTTATTGCTCAGAAAAA 58.977 33.333 5.84 0.00 38.96 1.94
6715 8083 7.391554 AGCTAACTGATGTTATTGCTCAGAAAA 59.608 33.333 5.84 0.00 36.22 2.29
6716 8084 6.881065 AGCTAACTGATGTTATTGCTCAGAAA 59.119 34.615 5.84 0.00 36.22 2.52
6717 8085 6.409704 AGCTAACTGATGTTATTGCTCAGAA 58.590 36.000 5.84 0.00 36.22 3.02
6718 8086 5.982356 AGCTAACTGATGTTATTGCTCAGA 58.018 37.500 5.84 0.00 36.22 3.27
6719 8087 6.983307 ACTAGCTAACTGATGTTATTGCTCAG 59.017 38.462 0.00 0.00 39.38 3.35
6720 8088 6.758416 CACTAGCTAACTGATGTTATTGCTCA 59.242 38.462 0.00 0.00 39.38 4.26
6721 8089 6.292596 GCACTAGCTAACTGATGTTATTGCTC 60.293 42.308 0.00 0.00 39.38 4.26
6722 8090 5.525378 GCACTAGCTAACTGATGTTATTGCT 59.475 40.000 0.00 7.48 40.70 3.91
6723 8091 5.294306 TGCACTAGCTAACTGATGTTATTGC 59.706 40.000 0.00 0.00 42.74 3.56
6724 8092 6.908870 TGCACTAGCTAACTGATGTTATTG 57.091 37.500 0.00 0.00 42.74 1.90
6725 8093 7.050377 ACATGCACTAGCTAACTGATGTTATT 58.950 34.615 0.00 0.00 42.74 1.40
6726 8094 6.586344 ACATGCACTAGCTAACTGATGTTAT 58.414 36.000 0.00 0.00 42.74 1.89
6727 8095 5.977635 ACATGCACTAGCTAACTGATGTTA 58.022 37.500 0.00 0.00 42.74 2.41
6728 8096 4.836825 ACATGCACTAGCTAACTGATGTT 58.163 39.130 0.00 0.00 42.74 2.71
6729 8097 4.478206 ACATGCACTAGCTAACTGATGT 57.522 40.909 0.00 0.00 42.74 3.06
6730 8098 5.595885 AGTACATGCACTAGCTAACTGATG 58.404 41.667 0.00 0.00 42.74 3.07
6731 8099 5.860941 AGTACATGCACTAGCTAACTGAT 57.139 39.130 0.00 0.00 42.74 2.90
6732 8100 6.152154 TGTTAGTACATGCACTAGCTAACTGA 59.848 38.462 17.68 9.76 42.74 3.41
6733 8101 6.330278 TGTTAGTACATGCACTAGCTAACTG 58.670 40.000 17.68 5.85 42.74 3.16
6734 8102 6.525578 TGTTAGTACATGCACTAGCTAACT 57.474 37.500 17.68 10.03 42.74 2.24
6735 8103 8.867112 TTATGTTAGTACATGCACTAGCTAAC 57.133 34.615 17.68 18.35 44.56 2.34
6736 8104 9.878667 TTTTATGTTAGTACATGCACTAGCTAA 57.121 29.630 17.68 11.85 44.56 3.09
6737 8105 9.529325 CTTTTATGTTAGTACATGCACTAGCTA 57.471 33.333 17.68 7.64 44.56 3.32
6738 8106 7.495934 CCTTTTATGTTAGTACATGCACTAGCT 59.504 37.037 17.68 8.51 44.56 3.32
6739 8107 7.280205 ACCTTTTATGTTAGTACATGCACTAGC 59.720 37.037 11.85 11.85 44.56 3.42
6740 8108 8.718102 ACCTTTTATGTTAGTACATGCACTAG 57.282 34.615 5.94 0.00 44.56 2.57
6741 8109 9.158233 GAACCTTTTATGTTAGTACATGCACTA 57.842 33.333 1.40 1.40 44.56 2.74
6742 8110 7.883311 AGAACCTTTTATGTTAGTACATGCACT 59.117 33.333 3.59 3.59 44.56 4.40
6743 8111 8.040716 AGAACCTTTTATGTTAGTACATGCAC 57.959 34.615 0.00 0.00 44.56 4.57
6744 8112 9.899661 ATAGAACCTTTTATGTTAGTACATGCA 57.100 29.630 0.00 0.00 44.56 3.96
6776 8144 9.249457 CATAGTGATTGTACTCGACACATTATT 57.751 33.333 0.00 0.00 37.96 1.40
6777 8145 8.414003 ACATAGTGATTGTACTCGACACATTAT 58.586 33.333 0.00 0.00 37.96 1.28
6778 8146 7.768240 ACATAGTGATTGTACTCGACACATTA 58.232 34.615 0.00 0.00 37.96 1.90
6779 8147 6.631016 ACATAGTGATTGTACTCGACACATT 58.369 36.000 0.00 0.00 37.96 2.71
6780 8148 6.208988 ACATAGTGATTGTACTCGACACAT 57.791 37.500 0.00 0.00 37.96 3.21
6781 8149 5.638596 ACATAGTGATTGTACTCGACACA 57.361 39.130 0.00 0.00 37.96 3.72
6782 8150 5.862323 ACAACATAGTGATTGTACTCGACAC 59.138 40.000 0.00 0.00 37.96 3.67
6783 8151 6.020971 ACAACATAGTGATTGTACTCGACA 57.979 37.500 0.00 0.00 37.27 4.35
6784 8152 7.249147 ACTACAACATAGTGATTGTACTCGAC 58.751 38.462 0.00 0.00 39.67 4.20
6785 8153 7.387119 ACTACAACATAGTGATTGTACTCGA 57.613 36.000 0.00 0.00 39.67 4.04
6786 8154 9.007252 GTTACTACAACATAGTGATTGTACTCG 57.993 37.037 0.00 0.00 39.67 4.18
6787 8155 9.298774 GGTTACTACAACATAGTGATTGTACTC 57.701 37.037 0.00 0.00 39.67 2.59
6788 8156 9.032624 AGGTTACTACAACATAGTGATTGTACT 57.967 33.333 0.00 0.00 39.67 2.73
6789 8157 9.084164 CAGGTTACTACAACATAGTGATTGTAC 57.916 37.037 0.00 0.00 39.67 2.90
6790 8158 7.762615 GCAGGTTACTACAACATAGTGATTGTA 59.237 37.037 0.00 0.00 39.67 2.41
6791 8159 6.594159 GCAGGTTACTACAACATAGTGATTGT 59.406 38.462 0.00 0.00 41.77 2.71
6792 8160 6.237835 CGCAGGTTACTACAACATAGTGATTG 60.238 42.308 0.00 0.00 0.00 2.67
6793 8161 5.810587 CGCAGGTTACTACAACATAGTGATT 59.189 40.000 0.00 0.00 0.00 2.57
6794 8162 5.348986 CGCAGGTTACTACAACATAGTGAT 58.651 41.667 0.00 0.00 0.00 3.06
6795 8163 4.740268 CGCAGGTTACTACAACATAGTGA 58.260 43.478 0.00 0.00 0.00 3.41
6815 8183 1.296727 GATACAAGCTACCAACCCGC 58.703 55.000 0.00 0.00 0.00 6.13
7030 8398 8.116026 ACCAGAAAAGATTACCTTGTCCATAAT 58.884 33.333 0.00 0.00 39.48 1.28
7054 8422 7.985184 AGATAAGGAAAAGAAAAACACCAAACC 59.015 33.333 0.00 0.00 0.00 3.27
7121 8489 2.661675 CACACGATTTCTACCTGTGACG 59.338 50.000 0.00 0.00 35.27 4.35
7270 8698 2.742053 CGTGGTTTCAATCTGTACAGGG 59.258 50.000 22.48 12.49 0.00 4.45
7287 8715 4.109050 GCTTCTCTTCTCTATTCACGTGG 58.891 47.826 17.00 0.00 0.00 4.94
7323 8751 7.773224 CCACAAGTTTCCATGTTATACCTATCA 59.227 37.037 0.00 0.00 0.00 2.15
7437 8865 6.366061 GCTTTCATACACATTTTGGAGGAAAC 59.634 38.462 0.00 0.00 42.64 2.78
7456 8884 0.673437 CGGCTCCCAAAAAGCTTTCA 59.327 50.000 13.10 0.00 39.75 2.69
7462 8890 1.328279 AAGGAACGGCTCCCAAAAAG 58.672 50.000 2.37 0.00 46.81 2.27
7517 8945 4.263331 GGTGAAATCTAAGGTCCCACTTCA 60.263 45.833 0.00 0.00 32.02 3.02
7526 8954 3.010250 GGTTGAGGGGTGAAATCTAAGGT 59.990 47.826 0.00 0.00 0.00 3.50
7542 8971 5.368989 AGACTTACCAGTTTGAAGGTTGAG 58.631 41.667 0.00 0.00 39.31 3.02
7710 9140 6.407202 TCTCTGAGTATTTCTAAAGTTGCCC 58.593 40.000 4.32 0.00 0.00 5.36
7730 9160 8.829373 ATTTGTAGCAATTTTCCCTTATCTCT 57.171 30.769 0.00 0.00 0.00 3.10
7809 9241 5.476599 AGCCTTATTGTTGCAGTCATTGTAA 59.523 36.000 0.00 0.00 0.00 2.41
7941 9375 5.859205 AACAGCAGAAACTTTGAAGGAAT 57.141 34.783 0.00 0.00 0.00 3.01
7949 9386 8.860088 AGAAATGGTAATAACAGCAGAAACTTT 58.140 29.630 0.00 0.00 0.00 2.66
8088 9525 7.283329 AGAAACTGTAAGAGACAAGGAACAAT 58.717 34.615 0.00 0.00 37.70 2.71
8210 9654 2.032981 CAAGGCACAACCCAGTCAC 58.967 57.895 0.00 0.00 40.58 3.67
8290 9734 3.491447 GCATCAGCTTCACCAACAAGTTT 60.491 43.478 0.00 0.00 37.91 2.66
8420 9868 1.960689 ACAAATGCAAGGCGGTAGTTT 59.039 42.857 0.00 0.00 0.00 2.66
8427 9875 6.361481 CAGATTATATTGACAAATGCAAGGCG 59.639 38.462 0.00 0.00 0.00 5.52
8428 9876 7.428020 TCAGATTATATTGACAAATGCAAGGC 58.572 34.615 0.00 0.00 0.00 4.35
8429 9877 9.406828 CATCAGATTATATTGACAAATGCAAGG 57.593 33.333 0.00 0.00 0.00 3.61
8430 9878 9.406828 CCATCAGATTATATTGACAAATGCAAG 57.593 33.333 0.00 0.00 0.00 4.01
8431 9879 8.916062 ACCATCAGATTATATTGACAAATGCAA 58.084 29.630 0.00 0.00 0.00 4.08
8432 9880 8.467963 ACCATCAGATTATATTGACAAATGCA 57.532 30.769 0.00 0.00 0.00 3.96
8574 10029 2.181125 TCCACCTGTAGGCGTAATGAA 58.819 47.619 0.00 0.00 39.32 2.57
8674 10131 1.243902 GCTTCCCGTTGGTCATTTCA 58.756 50.000 0.00 0.00 0.00 2.69
8771 10279 6.918626 TGATTTATTCTTTCGTGGAAATGCA 58.081 32.000 0.00 0.00 30.85 3.96
8782 10290 8.411683 AGTCCATCTTGCATGATTTATTCTTTC 58.588 33.333 12.15 0.00 0.00 2.62
8807 10315 8.099364 ACACAGGAAACACAACAGATAAATAG 57.901 34.615 0.00 0.00 0.00 1.73
8808 10316 9.733556 ATACACAGGAAACACAACAGATAAATA 57.266 29.630 0.00 0.00 0.00 1.40
8834 10346 7.985184 CCCAGTTAGTAGCACATTAACAAGATA 59.015 37.037 6.54 0.00 33.04 1.98
8840 10352 4.094442 GCACCCAGTTAGTAGCACATTAAC 59.906 45.833 0.00 0.00 31.26 2.01
8855 10367 1.620822 GGAACATGAAAGCACCCAGT 58.379 50.000 0.00 0.00 0.00 4.00
8907 10419 4.770010 TGACCTTTCTGTTTGTTCAAGGTT 59.230 37.500 3.49 0.00 45.92 3.50
8909 10421 4.202050 CCTGACCTTTCTGTTTGTTCAAGG 60.202 45.833 0.00 0.00 40.05 3.61
8910 10422 4.734695 GCCTGACCTTTCTGTTTGTTCAAG 60.735 45.833 0.00 0.00 0.00 3.02
8911 10423 3.130340 GCCTGACCTTTCTGTTTGTTCAA 59.870 43.478 0.00 0.00 0.00 2.69
8912 10424 2.687935 GCCTGACCTTTCTGTTTGTTCA 59.312 45.455 0.00 0.00 0.00 3.18
8913 10425 2.034685 GGCCTGACCTTTCTGTTTGTTC 59.965 50.000 0.00 0.00 34.51 3.18
8914 10426 2.031870 GGCCTGACCTTTCTGTTTGTT 58.968 47.619 0.00 0.00 34.51 2.83
8915 10427 1.692411 GGCCTGACCTTTCTGTTTGT 58.308 50.000 0.00 0.00 34.51 2.83
8927 10479 4.965814 TCATAAGATTCATGAGGCCTGAC 58.034 43.478 12.00 0.00 0.00 3.51
8938 10490 8.918202 AACTTGTAAGGTGTTCATAAGATTCA 57.082 30.769 0.00 0.00 0.00 2.57
8940 10492 9.787435 TGTAACTTGTAAGGTGTTCATAAGATT 57.213 29.630 0.00 0.00 0.00 2.40
8941 10493 9.787435 TTGTAACTTGTAAGGTGTTCATAAGAT 57.213 29.630 0.00 0.00 0.00 2.40
8942 10494 9.048446 GTTGTAACTTGTAAGGTGTTCATAAGA 57.952 33.333 0.00 0.00 0.00 2.10
8970 10525 6.675026 TCTGAAAGCATCAAACAGATTTCTG 58.325 36.000 6.03 6.03 42.81 3.02
9023 10586 2.227865 GGCAATGTCGTTGTGTTATGGT 59.772 45.455 6.65 0.00 40.07 3.55
9028 10591 3.818210 TGAATAGGCAATGTCGTTGTGTT 59.182 39.130 6.65 0.00 40.07 3.32
9029 10592 3.407698 TGAATAGGCAATGTCGTTGTGT 58.592 40.909 6.65 0.00 40.07 3.72
9035 10626 3.684305 TGTGTCTTGAATAGGCAATGTCG 59.316 43.478 0.00 0.00 40.91 4.35
9105 10704 7.991460 GGCCTGAAGGTGTAAGTTATAACTTAT 59.009 37.037 30.96 19.72 43.56 1.73
9106 10705 7.181485 AGGCCTGAAGGTGTAAGTTATAACTTA 59.819 37.037 26.93 26.93 42.38 2.24
9107 10706 6.012771 AGGCCTGAAGGTGTAAGTTATAACTT 60.013 38.462 28.78 28.78 43.62 2.66
9108 10707 5.487845 AGGCCTGAAGGTGTAAGTTATAACT 59.512 40.000 12.50 12.50 38.05 2.24
9109 10708 5.742063 AGGCCTGAAGGTGTAAGTTATAAC 58.258 41.667 3.11 7.57 37.57 1.89
9110 10709 6.382919 AAGGCCTGAAGGTGTAAGTTATAA 57.617 37.500 5.69 0.00 37.57 0.98
9111 10710 6.441284 TGTAAGGCCTGAAGGTGTAAGTTATA 59.559 38.462 5.69 0.00 37.57 0.98
9112 10711 4.929146 AAGGCCTGAAGGTGTAAGTTAT 57.071 40.909 5.69 0.00 37.57 1.89
9119 10718 3.117663 TCTTTTGTAAGGCCTGAAGGTGT 60.118 43.478 5.69 0.00 37.57 4.16
9146 10745 4.202245 TGTCTTATTCAAGGTCGAAGGG 57.798 45.455 0.00 0.00 32.22 3.95
9161 10760 6.183360 TGGCGGAAGATATGTTGTATGTCTTA 60.183 38.462 0.00 0.00 31.15 2.10
9177 10776 2.565391 TGTTCTGTAGAATGGCGGAAGA 59.435 45.455 0.00 0.00 36.33 2.87
9212 10833 2.098614 AGAGTGCGATCTGAGTGATGT 58.901 47.619 0.00 0.00 35.14 3.06
9264 10885 2.912956 TGGATTCTTGGAGCCTTACACT 59.087 45.455 0.00 0.00 0.00 3.55
9299 10920 6.069440 ACTGTTCCTTGATTCCTTGGATATGA 60.069 38.462 0.00 0.00 0.00 2.15
9362 10984 8.894768 ATTTCTAGGTCTTATTATGTGTGCTC 57.105 34.615 0.00 0.00 0.00 4.26
9363 10985 8.709308 AGATTTCTAGGTCTTATTATGTGTGCT 58.291 33.333 0.00 0.00 0.00 4.40
9451 11073 6.816640 GTGTAGAGTAGGCATTGTGATGTTAA 59.183 38.462 0.00 0.00 35.63 2.01
9516 11138 6.936279 TGAAAACCATGTAAAAGTTTGGACA 58.064 32.000 6.17 6.17 34.12 4.02
9559 11181 6.480981 GCCCAGATATGAAAATCAAAATGGTG 59.519 38.462 0.00 0.00 0.00 4.17
9603 11226 6.320418 GTGACAGGGTTACAAAATATTAGGGG 59.680 42.308 0.00 0.00 0.00 4.79
9605 11228 7.931578 TGTGACAGGGTTACAAAATATTAGG 57.068 36.000 0.00 0.00 29.36 2.69
9686 11309 9.342308 CAAATCAGATATAAGAAAACTAGCCCA 57.658 33.333 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.