Multiple sequence alignment - TraesCS4A01G231200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G231200 chr4A 100.000 5155 0 0 1 5155 540445518 540440364 0.000000e+00 9520.0
1 TraesCS4A01G231200 chr4A 82.178 202 30 5 4958 5155 169690043 169690242 8.880000e-38 169.0
2 TraesCS4A01G231200 chr4D 90.420 2380 117 48 98 2448 56705904 56708201 0.000000e+00 3029.0
3 TraesCS4A01G231200 chr4D 95.040 1855 57 11 2530 4363 56708203 56710043 0.000000e+00 2883.0
4 TraesCS4A01G231200 chr4D 85.172 290 24 9 4535 4822 56710148 56710420 3.930000e-71 279.0
5 TraesCS4A01G231200 chr4D 80.075 266 46 6 4895 5155 419336429 419336692 1.890000e-44 191.0
6 TraesCS4A01G231200 chr4B 95.126 1313 48 6 2466 3765 83134157 83135466 0.000000e+00 2056.0
7 TraesCS4A01G231200 chr4B 85.927 1478 91 59 43 1466 83131426 83132840 0.000000e+00 1469.0
8 TraesCS4A01G231200 chr4B 92.167 600 35 7 3786 4380 83135656 83136248 0.000000e+00 837.0
9 TraesCS4A01G231200 chr4B 91.410 454 19 5 1911 2347 83133653 83134103 5.710000e-169 604.0
10 TraesCS4A01G231200 chr4B 84.906 212 16 7 4404 4614 83136315 83136511 3.150000e-47 200.0
11 TraesCS4A01G231200 chr4B 94.444 90 1 3 2372 2457 83134093 83134182 9.000000e-28 135.0
12 TraesCS4A01G231200 chr2D 81.439 264 41 7 4898 5155 580260714 580260453 5.230000e-50 209.0
13 TraesCS4A01G231200 chr5B 80.000 265 47 5 4896 5155 620945423 620945160 1.890000e-44 191.0
14 TraesCS4A01G231200 chr5B 81.567 217 30 7 4913 5128 593231658 593231451 2.470000e-38 171.0
15 TraesCS4A01G231200 chr2B 81.545 233 39 4 4898 5128 76071702 76071472 6.810000e-44 189.0
16 TraesCS4A01G231200 chr7B 80.816 245 42 4 4913 5155 200717771 200717530 2.450000e-43 187.0
17 TraesCS4A01G231200 chr3A 82.524 206 28 3 4925 5128 714402565 714402764 1.910000e-39 174.0
18 TraesCS4A01G231200 chr3A 78.125 128 14 7 1872 1999 489162541 489162428 9.260000e-08 69.4
19 TraesCS4A01G231200 chr1A 79.661 236 44 3 4924 5155 538801978 538801743 3.190000e-37 167.0
20 TraesCS4A01G231200 chr2A 78.906 128 13 7 1872 1999 73147741 73147854 1.990000e-09 75.0
21 TraesCS4A01G231200 chr2A 78.125 128 14 3 1872 1999 520319120 520319233 9.260000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G231200 chr4A 540440364 540445518 5154 True 9520.000000 9520 100.000000 1 5155 1 chr4A.!!$R1 5154
1 TraesCS4A01G231200 chr4D 56705904 56710420 4516 False 2063.666667 3029 90.210667 98 4822 3 chr4D.!!$F2 4724
2 TraesCS4A01G231200 chr4B 83131426 83136511 5085 False 883.500000 2056 90.663333 43 4614 6 chr4B.!!$F1 4571

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.171231 GGTCGAGCCATTCTTTTGCC 59.829 55.0 2.39 0.00 37.17 4.52 F
73 74 0.179189 GTCGAGCCATTCTTTTGCCG 60.179 55.0 0.00 0.00 0.00 5.69 F
1697 2049 0.178987 TGAGCCGGGAGATCTCTACC 60.179 60.0 21.81 14.33 43.81 3.18 F
2460 2946 0.040157 GCTGCACATCACTCGCAAAA 60.040 50.0 0.00 0.00 34.75 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1336 1395 0.103208 CTCGAGATTCTGGTTCCCCG 59.897 60.0 6.58 0.0 0.00 5.73 R
1924 2359 0.238289 CACACGCCACATTGGTCTTC 59.762 55.0 0.00 0.0 40.46 2.87 R
3353 3852 0.607217 TGTTCTGGCAGCCACATGAG 60.607 55.0 11.22 0.0 0.00 2.90 R
4156 4824 0.745486 CAGCGCTCAATGGGTCATGA 60.745 55.0 7.13 0.0 0.00 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.148916 TTGAAGTCGCACGATGAAGT 57.851 45.000 0.00 0.00 0.00 3.01
20 21 2.148916 TGAAGTCGCACGATGAAGTT 57.851 45.000 0.00 0.00 0.00 2.66
21 22 1.792367 TGAAGTCGCACGATGAAGTTG 59.208 47.619 0.00 0.00 0.00 3.16
22 23 1.126846 GAAGTCGCACGATGAAGTTGG 59.873 52.381 0.00 0.00 0.00 3.77
23 24 1.132640 GTCGCACGATGAAGTTGGC 59.867 57.895 0.00 0.00 0.00 4.52
24 25 2.032634 TCGCACGATGAAGTTGGCC 61.033 57.895 0.00 0.00 0.00 5.36
25 26 2.034879 CGCACGATGAAGTTGGCCT 61.035 57.895 3.32 0.00 0.00 5.19
26 27 1.577328 CGCACGATGAAGTTGGCCTT 61.577 55.000 3.32 0.00 35.59 4.35
27 28 1.448985 GCACGATGAAGTTGGCCTTA 58.551 50.000 3.32 0.00 32.03 2.69
28 29 2.017049 GCACGATGAAGTTGGCCTTAT 58.983 47.619 3.32 0.00 32.03 1.73
29 30 2.223340 GCACGATGAAGTTGGCCTTATG 60.223 50.000 3.32 0.00 32.03 1.90
30 31 3.009723 CACGATGAAGTTGGCCTTATGT 58.990 45.455 3.32 0.00 32.03 2.29
31 32 3.063997 CACGATGAAGTTGGCCTTATGTC 59.936 47.826 3.32 0.00 32.03 3.06
32 33 2.614057 CGATGAAGTTGGCCTTATGTCC 59.386 50.000 3.32 0.00 32.03 4.02
33 34 3.682718 CGATGAAGTTGGCCTTATGTCCT 60.683 47.826 3.32 0.00 32.03 3.85
34 35 3.806949 TGAAGTTGGCCTTATGTCCTT 57.193 42.857 3.32 0.00 32.03 3.36
35 36 4.112634 TGAAGTTGGCCTTATGTCCTTT 57.887 40.909 3.32 0.00 32.03 3.11
36 37 5.249780 TGAAGTTGGCCTTATGTCCTTTA 57.750 39.130 3.32 0.00 32.03 1.85
37 38 5.253330 TGAAGTTGGCCTTATGTCCTTTAG 58.747 41.667 3.32 0.00 32.03 1.85
38 39 4.236527 AGTTGGCCTTATGTCCTTTAGG 57.763 45.455 3.32 0.00 0.00 2.69
39 40 3.850173 AGTTGGCCTTATGTCCTTTAGGA 59.150 43.478 3.32 0.00 43.08 2.94
69 70 2.162681 CCAAGGTCGAGCCATTCTTTT 58.837 47.619 11.73 0.00 40.61 2.27
70 71 2.095059 CCAAGGTCGAGCCATTCTTTTG 60.095 50.000 11.73 7.23 40.61 2.44
71 72 1.168714 AGGTCGAGCCATTCTTTTGC 58.831 50.000 11.73 0.00 40.61 3.68
72 73 0.171231 GGTCGAGCCATTCTTTTGCC 59.829 55.000 2.39 0.00 37.17 4.52
73 74 0.179189 GTCGAGCCATTCTTTTGCCG 60.179 55.000 0.00 0.00 0.00 5.69
78 79 1.966762 CCATTCTTTTGCCGGCAGT 59.033 52.632 30.75 9.83 0.00 4.40
80 81 0.597568 CATTCTTTTGCCGGCAGTCA 59.402 50.000 30.75 13.09 0.00 3.41
81 82 0.598065 ATTCTTTTGCCGGCAGTCAC 59.402 50.000 30.75 0.00 0.00 3.67
82 83 0.749818 TTCTTTTGCCGGCAGTCACA 60.750 50.000 30.75 12.18 0.00 3.58
83 84 0.749818 TCTTTTGCCGGCAGTCACAA 60.750 50.000 30.75 18.21 0.00 3.33
92 97 2.951642 CCGGCAGTCACAATATTCCAAT 59.048 45.455 0.00 0.00 0.00 3.16
96 101 3.953612 GCAGTCACAATATTCCAATCCCA 59.046 43.478 0.00 0.00 0.00 4.37
253 258 1.292223 CATGTTCCGTGGGACGTCT 59.708 57.895 16.46 0.00 40.58 4.18
307 312 3.771160 ACCCATCCGTGTCGAGCC 61.771 66.667 0.00 0.00 0.00 4.70
329 334 5.746656 GCCACACGGGGGAATAAGATTTATA 60.747 44.000 0.00 0.00 37.04 0.98
330 335 5.704053 CCACACGGGGGAATAAGATTTATAC 59.296 44.000 0.00 0.00 0.00 1.47
331 336 5.704053 CACACGGGGGAATAAGATTTATACC 59.296 44.000 0.00 0.00 0.00 2.73
332 337 5.370289 ACACGGGGGAATAAGATTTATACCA 59.630 40.000 0.00 0.00 0.00 3.25
337 345 7.336931 CGGGGGAATAAGATTTATACCAAGATG 59.663 40.741 0.00 0.00 0.00 2.90
339 347 9.807921 GGGGAATAAGATTTATACCAAGATGAA 57.192 33.333 0.00 0.00 0.00 2.57
354 362 7.752695 ACCAAGATGAAGATTAACAACGATTC 58.247 34.615 0.00 0.00 0.00 2.52
557 573 0.601841 TCAAACTTTCGTCCCTCCGC 60.602 55.000 0.00 0.00 0.00 5.54
746 779 3.443925 CGCTGCTCCTCCGAGACA 61.444 66.667 0.00 0.00 38.52 3.41
752 785 1.711060 GCTCCTCCGAGACAGAGACG 61.711 65.000 0.00 0.00 38.52 4.18
970 1003 3.518998 GCACTAGGGAGCGAGCGA 61.519 66.667 0.00 0.00 0.00 4.93
971 1004 2.718731 CACTAGGGAGCGAGCGAG 59.281 66.667 0.00 0.00 0.00 5.03
972 1005 3.213402 ACTAGGGAGCGAGCGAGC 61.213 66.667 0.00 0.00 37.41 5.03
993 1026 2.492090 CTCTGTTCCTCGCCTCGG 59.508 66.667 0.00 0.00 0.00 4.63
995 1028 4.821589 CTGTTCCTCGCCTCGGCC 62.822 72.222 1.72 0.00 37.98 6.13
1144 1193 2.094894 CAGCTCTACATTGCCTTGTTCG 59.905 50.000 0.00 0.00 0.00 3.95
1216 1271 0.621082 CCAGACTCCTTTCCCCCTTC 59.379 60.000 0.00 0.00 0.00 3.46
1218 1273 1.557371 CAGACTCCTTTCCCCCTTCTC 59.443 57.143 0.00 0.00 0.00 2.87
1221 1276 2.645297 GACTCCTTTCCCCCTTCTCTTT 59.355 50.000 0.00 0.00 0.00 2.52
1283 1341 2.764314 GCGGCCATCTGCAACGATT 61.764 57.895 2.24 0.00 43.99 3.34
1302 1360 5.856986 ACGATTCGATACATAAATCTCCGTG 59.143 40.000 13.95 0.00 0.00 4.94
1307 1365 8.738199 TTCGATACATAAATCTCCGTGTATTC 57.262 34.615 0.00 0.00 37.76 1.75
1315 1373 1.335810 TCTCCGTGTATTCCCGATTCG 59.664 52.381 0.00 0.00 0.00 3.34
1318 1376 2.033299 TCCGTGTATTCCCGATTCGTAC 59.967 50.000 5.20 1.83 0.00 3.67
1323 1381 0.672342 ATTCCCGATTCGTACGAGGG 59.328 55.000 27.16 27.16 43.32 4.30
1324 1382 1.386525 TTCCCGATTCGTACGAGGGG 61.387 60.000 30.27 30.29 42.26 4.79
1325 1383 2.726274 CCGATTCGTACGAGGGGG 59.274 66.667 18.64 15.74 0.00 5.40
1336 1395 1.474330 ACGAGGGGGAAAAATCATGC 58.526 50.000 0.00 0.00 0.00 4.06
1361 1420 2.376808 ACCAGAATCTCGAGCTGTTG 57.623 50.000 7.81 3.83 0.00 3.33
1367 1426 0.322975 ATCTCGAGCTGTTGCCACTT 59.677 50.000 7.81 0.00 40.80 3.16
1368 1427 0.966179 TCTCGAGCTGTTGCCACTTA 59.034 50.000 7.81 0.00 40.80 2.24
1369 1428 1.067565 TCTCGAGCTGTTGCCACTTAG 60.068 52.381 7.81 0.00 40.80 2.18
1370 1429 0.966179 TCGAGCTGTTGCCACTTAGA 59.034 50.000 0.00 0.00 40.80 2.10
1371 1430 1.067565 TCGAGCTGTTGCCACTTAGAG 60.068 52.381 0.00 0.00 40.80 2.43
1413 1472 5.151297 TGGATTTCTTCCCATTTTTCAGC 57.849 39.130 0.00 0.00 44.77 4.26
1425 1484 5.156355 CCATTTTTCAGCCATATCATACGC 58.844 41.667 0.00 0.00 0.00 4.42
1478 1541 4.566987 AGTGGTCGGTCAAGAAAATACTC 58.433 43.478 0.00 0.00 0.00 2.59
1486 1549 4.763279 GGTCAAGAAAATACTCGGGGAAAA 59.237 41.667 0.00 0.00 0.00 2.29
1493 1556 4.442454 CTCGGGGAAAAGGGGCCC 62.442 72.222 17.12 17.12 43.91 5.80
1526 1589 4.136796 TCGATTGCCATCTAATCAAAGGG 58.863 43.478 0.00 0.00 34.90 3.95
1529 1592 4.314522 TTGCCATCTAATCAAAGGGTCA 57.685 40.909 0.00 0.00 0.00 4.02
1555 1618 8.190888 GGATCATTCGTATCCTGCTTTATTAG 57.809 38.462 0.00 0.00 39.93 1.73
1579 1929 8.930846 AGGCATGCAGAGAGTATAAATTAATT 57.069 30.769 21.36 0.00 0.00 1.40
1598 1948 3.665745 TTAGTTCCTGTAACCACGGTC 57.334 47.619 0.00 0.00 39.03 4.79
1617 1967 4.618965 GGTCGGTAGCCTTTAATCACTAG 58.381 47.826 0.00 0.00 0.00 2.57
1697 2049 0.178987 TGAGCCGGGAGATCTCTACC 60.179 60.000 21.81 14.33 43.81 3.18
1791 2144 1.674322 ACCACCGCAGTTACATGGC 60.674 57.895 0.00 0.00 33.46 4.40
1797 2150 1.695893 CGCAGTTACATGGCTGTCGG 61.696 60.000 13.22 3.40 36.79 4.79
1798 2151 1.369091 GCAGTTACATGGCTGTCGGG 61.369 60.000 13.22 0.00 36.79 5.14
1800 2153 0.249398 AGTTACATGGCTGTCGGGAC 59.751 55.000 0.00 0.00 36.79 4.46
1814 2169 5.066505 GCTGTCGGGACATTTCAATCTTAAT 59.933 40.000 1.41 0.00 41.01 1.40
1818 2173 9.015367 TGTCGGGACATTTCAATCTTAATTAAA 57.985 29.630 0.00 0.00 36.21 1.52
1938 2373 0.179156 CATGCGAAGACCAATGTGGC 60.179 55.000 0.00 0.00 42.67 5.01
1947 2382 0.607762 ACCAATGTGGCGTGTGCATA 60.608 50.000 0.00 0.00 42.67 3.14
1948 2383 0.740149 CCAATGTGGCGTGTGCATAT 59.260 50.000 0.00 0.00 45.35 1.78
1949 2384 1.134753 CCAATGTGGCGTGTGCATATT 59.865 47.619 0.00 0.00 45.35 1.28
1990 2425 6.266103 AGTTCTTCCTCAATTTTCATTCAGCA 59.734 34.615 0.00 0.00 0.00 4.41
2064 2499 7.275779 CGTATTGTGCTACTTTTCATACAGAGT 59.724 37.037 0.00 0.00 0.00 3.24
2110 2548 2.558359 GGAACTTGATGTGAACAAGGGG 59.442 50.000 0.00 0.00 45.92 4.79
2130 2568 3.195396 GGGGTGTGTTGAAATGCATGTAT 59.805 43.478 0.00 0.00 0.00 2.29
2131 2569 4.400884 GGGGTGTGTTGAAATGCATGTATA 59.599 41.667 0.00 0.00 0.00 1.47
2153 2604 7.715265 ATATTAACTTGAGGTTCTGCGTATG 57.285 36.000 0.00 0.00 39.17 2.39
2198 2649 0.613777 ACGACCCTCTTGATCCAACC 59.386 55.000 0.00 0.00 0.00 3.77
2250 2701 1.140452 AGTGGACTGCAGATGGCTATG 59.860 52.381 23.35 0.00 45.15 2.23
2344 2796 7.466860 CGCAAGTACTCCTTTTTGTAAAACTCT 60.467 37.037 0.00 0.00 0.00 3.24
2345 2797 8.188799 GCAAGTACTCCTTTTTGTAAAACTCTT 58.811 33.333 0.00 0.00 0.00 2.85
2346 2798 9.717892 CAAGTACTCCTTTTTGTAAAACTCTTC 57.282 33.333 0.00 0.00 0.00 2.87
2347 2799 9.682465 AAGTACTCCTTTTTGTAAAACTCTTCT 57.318 29.630 0.00 0.00 0.00 2.85
2348 2800 9.682465 AGTACTCCTTTTTGTAAAACTCTTCTT 57.318 29.630 0.00 0.00 0.00 2.52
2351 2803 8.803235 ACTCCTTTTTGTAAAACTCTTCTTTGT 58.197 29.630 0.00 0.00 0.00 2.83
2357 2809 9.763465 TTTTGTAAAACTCTTCTTTGTAGTTCG 57.237 29.630 0.00 0.00 32.42 3.95
2358 2810 8.706492 TTGTAAAACTCTTCTTTGTAGTTCGA 57.294 30.769 0.00 0.00 32.42 3.71
2359 2811 8.123445 TGTAAAACTCTTCTTTGTAGTTCGAC 57.877 34.615 0.00 0.00 32.42 4.20
2360 2812 7.760794 TGTAAAACTCTTCTTTGTAGTTCGACA 59.239 33.333 0.00 0.00 32.42 4.35
2361 2813 7.787725 AAAACTCTTCTTTGTAGTTCGACAT 57.212 32.000 0.00 0.00 32.42 3.06
2362 2814 7.787725 AAACTCTTCTTTGTAGTTCGACATT 57.212 32.000 0.00 0.00 32.42 2.71
2363 2815 6.771188 ACTCTTCTTTGTAGTTCGACATTG 57.229 37.500 0.00 0.00 0.00 2.82
2364 2816 5.177696 ACTCTTCTTTGTAGTTCGACATTGC 59.822 40.000 0.00 0.00 0.00 3.56
2365 2817 5.053811 TCTTCTTTGTAGTTCGACATTGCA 58.946 37.500 0.00 0.00 0.00 4.08
2366 2818 5.700832 TCTTCTTTGTAGTTCGACATTGCAT 59.299 36.000 0.00 0.00 0.00 3.96
2367 2819 5.530519 TCTTTGTAGTTCGACATTGCATC 57.469 39.130 0.00 0.00 0.00 3.91
2368 2820 4.391830 TCTTTGTAGTTCGACATTGCATCC 59.608 41.667 0.00 0.00 0.00 3.51
2369 2821 3.610040 TGTAGTTCGACATTGCATCCT 57.390 42.857 0.00 0.00 0.00 3.24
2370 2822 4.729227 TGTAGTTCGACATTGCATCCTA 57.271 40.909 0.00 0.00 0.00 2.94
2371 2823 5.276461 TGTAGTTCGACATTGCATCCTAT 57.724 39.130 0.00 0.00 0.00 2.57
2372 2824 6.399639 TGTAGTTCGACATTGCATCCTATA 57.600 37.500 0.00 0.00 0.00 1.31
2373 2825 6.811954 TGTAGTTCGACATTGCATCCTATAA 58.188 36.000 0.00 0.00 0.00 0.98
2374 2826 7.269316 TGTAGTTCGACATTGCATCCTATAAA 58.731 34.615 0.00 0.00 0.00 1.40
2375 2827 7.766738 TGTAGTTCGACATTGCATCCTATAAAA 59.233 33.333 0.00 0.00 0.00 1.52
2376 2828 7.016361 AGTTCGACATTGCATCCTATAAAAC 57.984 36.000 0.00 0.00 0.00 2.43
2454 2940 1.326852 CAGATTCGCTGCACATCACTC 59.673 52.381 0.00 0.00 37.90 3.51
2455 2941 0.299895 GATTCGCTGCACATCACTCG 59.700 55.000 0.00 0.00 0.00 4.18
2456 2942 1.699656 ATTCGCTGCACATCACTCGC 61.700 55.000 0.00 0.00 0.00 5.03
2457 2943 3.113979 CGCTGCACATCACTCGCA 61.114 61.111 0.00 0.00 0.00 5.10
2458 2944 2.670210 CGCTGCACATCACTCGCAA 61.670 57.895 0.00 0.00 34.75 4.85
2459 2945 1.575922 GCTGCACATCACTCGCAAA 59.424 52.632 0.00 0.00 34.75 3.68
2460 2946 0.040157 GCTGCACATCACTCGCAAAA 60.040 50.000 0.00 0.00 34.75 2.44
2461 2947 1.600164 GCTGCACATCACTCGCAAAAA 60.600 47.619 0.00 0.00 34.75 1.94
2484 2970 3.921119 AAAAAGATTCGCTGCACATCA 57.079 38.095 0.00 0.00 0.00 3.07
2485 2971 2.907910 AAAGATTCGCTGCACATCAC 57.092 45.000 0.00 0.00 0.00 3.06
2486 2972 2.105006 AAGATTCGCTGCACATCACT 57.895 45.000 0.00 0.00 0.00 3.41
2487 2973 2.105006 AGATTCGCTGCACATCACTT 57.895 45.000 0.00 0.00 0.00 3.16
2488 2974 1.736126 AGATTCGCTGCACATCACTTG 59.264 47.619 0.00 0.00 0.00 3.16
2497 2983 1.337703 GCACATCACTTGGCTTCAACA 59.662 47.619 0.00 0.00 0.00 3.33
2501 2987 5.771469 CACATCACTTGGCTTCAACATTTA 58.229 37.500 0.00 0.00 0.00 1.40
2506 2992 6.913170 TCACTTGGCTTCAACATTTATCTTC 58.087 36.000 0.00 0.00 0.00 2.87
2507 2993 6.716628 TCACTTGGCTTCAACATTTATCTTCT 59.283 34.615 0.00 0.00 0.00 2.85
2508 2994 7.231317 TCACTTGGCTTCAACATTTATCTTCTT 59.769 33.333 0.00 0.00 0.00 2.52
2608 3094 3.252458 GTGAAACATACAACCTCCACCAC 59.748 47.826 0.00 0.00 36.32 4.16
2769 3255 1.614051 GGAATGATGGGTGCACAGACA 60.614 52.381 20.43 14.53 0.00 3.41
2906 3392 4.787551 TGTTGCAAAGGAGGAGTTCTTAA 58.212 39.130 0.00 0.00 0.00 1.85
3083 3569 3.600388 CTCCCACTAAGTTCATTTCGCT 58.400 45.455 0.00 0.00 0.00 4.93
3111 3597 1.160137 GGAGAACAACTCAAGCGCAT 58.840 50.000 11.47 0.00 46.54 4.73
3326 3825 6.302313 GTGTTGCACTATCATCGTTTTACAAC 59.698 38.462 0.00 0.00 35.45 3.32
3353 3852 1.604604 TAGTTGACTGCCCAAAGTGC 58.395 50.000 0.00 0.00 0.00 4.40
3368 3867 2.360726 TGCTCATGTGGCTGCCAG 60.361 61.111 24.10 11.11 32.34 4.85
3371 3870 1.930908 GCTCATGTGGCTGCCAGAAC 61.931 60.000 24.10 11.45 32.34 3.01
3442 3941 3.084786 AGGCAGATACTTTTTGCACTCC 58.915 45.455 0.00 0.00 39.54 3.85
3555 4054 2.434843 CCCCCTAGTGCGATGCTCA 61.435 63.158 0.00 0.00 0.00 4.26
3663 4162 3.067883 GGAACTACCGGATGAACTACTCC 59.932 52.174 9.46 0.00 0.00 3.85
3673 4172 1.975680 TGAACTACTCCCAGTGGAACC 59.024 52.381 11.95 0.00 41.17 3.62
3765 4264 7.545546 ACCCCTATGGAGTAATAAGTGAGTAT 58.454 38.462 0.00 0.00 38.00 2.12
3767 4266 8.314751 CCCCTATGGAGTAATAAGTGAGTATTG 58.685 40.741 0.00 0.00 35.39 1.90
3770 4269 9.988815 CTATGGAGTAATAAGTGAGTATTGCTT 57.011 33.333 0.00 0.00 36.78 3.91
3776 4275 9.780186 AGTAATAAGTGAGTATTGCTTTATCCC 57.220 33.333 0.00 0.00 34.04 3.85
3777 4276 9.780186 GTAATAAGTGAGTATTGCTTTATCCCT 57.220 33.333 0.00 0.00 0.00 4.20
3779 4278 5.297569 AGTGAGTATTGCTTTATCCCTCC 57.702 43.478 0.00 0.00 0.00 4.30
3780 4279 4.721776 AGTGAGTATTGCTTTATCCCTCCA 59.278 41.667 0.00 0.00 0.00 3.86
3781 4280 5.370880 AGTGAGTATTGCTTTATCCCTCCAT 59.629 40.000 0.00 0.00 0.00 3.41
3989 4657 4.439057 TCCCAAGACGCATATACTTCAAC 58.561 43.478 0.00 0.00 0.00 3.18
4013 4681 2.125229 AGCTGCGTCATGCCTCAG 60.125 61.111 0.00 0.00 45.60 3.35
4130 4798 7.448228 CGTTCTTGTACAATCATCTAGTGTTG 58.552 38.462 9.13 0.00 37.60 3.33
4155 4823 2.898729 ATACTGCGGGAAGTCATGAG 57.101 50.000 0.00 0.00 0.00 2.90
4156 4824 1.557099 TACTGCGGGAAGTCATGAGT 58.443 50.000 0.00 0.00 0.00 3.41
4160 4828 1.293924 GCGGGAAGTCATGAGTCATG 58.706 55.000 24.60 24.60 42.60 3.07
4161 4829 1.134699 GCGGGAAGTCATGAGTCATGA 60.135 52.381 28.18 28.18 46.84 3.07
4206 4874 5.298276 TGAGTTTGTTGCAAGTTTAGGTAGG 59.702 40.000 0.00 0.00 0.00 3.18
4267 4942 1.685803 CCCATTGGCCATTGAGCACTA 60.686 52.381 25.72 0.00 0.00 2.74
4268 4943 1.406539 CCATTGGCCATTGAGCACTAC 59.593 52.381 25.72 0.00 0.00 2.73
4269 4944 2.372264 CATTGGCCATTGAGCACTACT 58.628 47.619 20.72 0.00 0.00 2.57
4272 4947 1.339055 TGGCCATTGAGCACTACTGAC 60.339 52.381 0.00 0.00 0.00 3.51
4273 4948 1.339055 GGCCATTGAGCACTACTGACA 60.339 52.381 0.00 0.00 0.00 3.58
4339 5014 7.411480 GGTTCTTGCAAGTTTAAGTTTGTTCAC 60.411 37.037 25.19 0.00 0.00 3.18
4389 5065 7.671495 AAATAAGTTTGAATCCATGTTTGCC 57.329 32.000 0.00 0.00 0.00 4.52
4391 5067 2.029110 AGTTTGAATCCATGTTTGCCCG 60.029 45.455 0.00 0.00 0.00 6.13
4393 5069 0.969917 TGAATCCATGTTTGCCCGGG 60.970 55.000 19.09 19.09 0.00 5.73
4394 5070 1.675720 GAATCCATGTTTGCCCGGGG 61.676 60.000 25.28 9.31 0.00 5.73
4395 5071 3.677480 ATCCATGTTTGCCCGGGGG 62.677 63.158 25.28 13.41 38.57 5.40
4473 5205 1.544825 CGGAGAAGGGAAGCTGTGGA 61.545 60.000 0.00 0.00 0.00 4.02
4478 5210 4.410400 GGGAAGCTGTGGACGGGG 62.410 72.222 0.00 0.00 0.00 5.73
4486 5218 2.978010 GTGGACGGGGTGTTGCTG 60.978 66.667 0.00 0.00 0.00 4.41
4487 5219 4.947147 TGGACGGGGTGTTGCTGC 62.947 66.667 0.00 0.00 0.00 5.25
4488 5220 4.643387 GGACGGGGTGTTGCTGCT 62.643 66.667 0.00 0.00 0.00 4.24
4490 5222 4.988598 ACGGGGTGTTGCTGCTCG 62.989 66.667 0.00 0.00 0.00 5.03
4494 5226 3.730761 GGTGTTGCTGCTCGGCTG 61.731 66.667 0.00 0.00 0.00 4.85
4496 5228 2.666190 TGTTGCTGCTCGGCTGAC 60.666 61.111 0.00 2.28 0.00 3.51
4497 5229 3.426568 GTTGCTGCTCGGCTGACC 61.427 66.667 0.00 0.00 0.00 4.02
4509 5241 1.069090 GCTGACCGAGTGTTGTGGA 59.931 57.895 0.00 0.00 0.00 4.02
4511 5243 1.714794 CTGACCGAGTGTTGTGGATC 58.285 55.000 0.00 0.00 0.00 3.36
4557 5289 1.879575 AGTGGTCTTATAGCTGGCCA 58.120 50.000 4.71 4.71 0.00 5.36
4673 5405 4.357947 ACGACGGCGCAGATGTGT 62.358 61.111 12.58 3.74 42.48 3.72
4675 5407 2.432456 GACGGCGCAGATGTGTGA 60.432 61.111 16.26 0.00 36.14 3.58
4676 5408 2.433145 ACGGCGCAGATGTGTGAG 60.433 61.111 16.26 2.84 36.14 3.51
4677 5409 3.190849 CGGCGCAGATGTGTGAGG 61.191 66.667 10.83 0.00 36.14 3.86
4679 5411 3.503363 GCGCAGATGTGTGAGGCC 61.503 66.667 7.72 0.00 36.14 5.19
4681 5413 2.104859 CGCAGATGTGTGAGGCCTG 61.105 63.158 12.00 0.00 36.14 4.85
4682 5414 1.002868 GCAGATGTGTGAGGCCTGT 60.003 57.895 12.00 0.00 0.00 4.00
4709 5441 1.091537 ACGACATGGCCCGTTTATTG 58.908 50.000 0.00 0.00 35.21 1.90
4711 5443 1.470890 CGACATGGCCCGTTTATTGTT 59.529 47.619 0.00 0.00 0.00 2.83
4713 5445 3.612955 CGACATGGCCCGTTTATTGTTTT 60.613 43.478 0.00 0.00 0.00 2.43
4714 5446 3.920446 ACATGGCCCGTTTATTGTTTTC 58.080 40.909 0.00 0.00 0.00 2.29
4715 5447 3.576550 ACATGGCCCGTTTATTGTTTTCT 59.423 39.130 0.00 0.00 0.00 2.52
4716 5448 3.651803 TGGCCCGTTTATTGTTTTCTG 57.348 42.857 0.00 0.00 0.00 3.02
4717 5449 2.297597 TGGCCCGTTTATTGTTTTCTGG 59.702 45.455 0.00 0.00 0.00 3.86
4718 5450 2.559231 GGCCCGTTTATTGTTTTCTGGA 59.441 45.455 0.00 0.00 0.00 3.86
4719 5451 3.194755 GGCCCGTTTATTGTTTTCTGGAT 59.805 43.478 0.00 0.00 0.00 3.41
4720 5452 4.322424 GGCCCGTTTATTGTTTTCTGGATT 60.322 41.667 0.00 0.00 0.00 3.01
4721 5453 5.234752 GCCCGTTTATTGTTTTCTGGATTT 58.765 37.500 0.00 0.00 0.00 2.17
4722 5454 5.699001 GCCCGTTTATTGTTTTCTGGATTTT 59.301 36.000 0.00 0.00 0.00 1.82
4723 5455 6.203915 GCCCGTTTATTGTTTTCTGGATTTTT 59.796 34.615 0.00 0.00 0.00 1.94
4769 5501 8.929487 AGTTATTGACCCAAAAATAGTCCAAAA 58.071 29.630 0.00 0.00 0.00 2.44
4773 5505 3.326588 ACCCAAAAATAGTCCAAAAGGCC 59.673 43.478 0.00 0.00 0.00 5.19
4774 5506 3.584834 CCAAAAATAGTCCAAAAGGCCG 58.415 45.455 0.00 0.00 0.00 6.13
4783 5516 0.318120 CCAAAAGGCCGAAAGCACAT 59.682 50.000 0.00 0.00 46.50 3.21
4791 5524 1.503542 CGAAAGCACATGGGCTGAC 59.496 57.895 26.17 18.95 45.07 3.51
4792 5525 1.885871 GAAAGCACATGGGCTGACC 59.114 57.895 26.17 11.99 45.07 4.02
4835 5568 3.070576 GCTGGGCCATTGTCCACC 61.071 66.667 6.72 0.00 42.76 4.61
4836 5569 2.765969 CTGGGCCATTGTCCACCT 59.234 61.111 6.72 0.00 42.76 4.00
4837 5570 1.077265 CTGGGCCATTGTCCACCTT 59.923 57.895 6.72 0.00 42.76 3.50
4838 5571 1.228831 TGGGCCATTGTCCACCTTG 60.229 57.895 0.00 0.00 42.76 3.61
4839 5572 1.984026 GGGCCATTGTCCACCTTGG 60.984 63.158 4.39 0.00 39.43 3.61
4840 5573 2.973082 GCCATTGTCCACCTTGGC 59.027 61.111 4.72 4.72 46.94 4.52
4841 5574 3.698765 CCATTGTCCACCTTGGCC 58.301 61.111 0.00 0.00 37.47 5.36
4842 5575 1.077265 CCATTGTCCACCTTGGCCT 59.923 57.895 3.32 0.00 37.47 5.19
4843 5576 0.967380 CCATTGTCCACCTTGGCCTC 60.967 60.000 3.32 0.00 37.47 4.70
4844 5577 0.038744 CATTGTCCACCTTGGCCTCT 59.961 55.000 3.32 0.00 37.47 3.69
4845 5578 1.281867 CATTGTCCACCTTGGCCTCTA 59.718 52.381 3.32 0.00 37.47 2.43
4846 5579 1.440618 TTGTCCACCTTGGCCTCTAA 58.559 50.000 3.32 0.00 37.47 2.10
4847 5580 1.440618 TGTCCACCTTGGCCTCTAAA 58.559 50.000 3.32 0.00 37.47 1.85
4848 5581 1.777878 TGTCCACCTTGGCCTCTAAAA 59.222 47.619 3.32 0.00 37.47 1.52
4849 5582 2.160205 GTCCACCTTGGCCTCTAAAAC 58.840 52.381 3.32 0.00 37.47 2.43
4850 5583 1.777878 TCCACCTTGGCCTCTAAAACA 59.222 47.619 3.32 0.00 37.47 2.83
4851 5584 2.162681 CCACCTTGGCCTCTAAAACAG 58.837 52.381 3.32 0.00 0.00 3.16
4852 5585 2.162681 CACCTTGGCCTCTAAAACAGG 58.837 52.381 3.32 0.00 0.00 4.00
4853 5586 1.075536 ACCTTGGCCTCTAAAACAGGG 59.924 52.381 3.32 0.00 36.30 4.45
4854 5587 1.075536 CCTTGGCCTCTAAAACAGGGT 59.924 52.381 3.32 0.00 0.00 4.34
4855 5588 2.437413 CTTGGCCTCTAAAACAGGGTC 58.563 52.381 3.32 0.00 0.00 4.46
4856 5589 1.440618 TGGCCTCTAAAACAGGGTCA 58.559 50.000 3.32 0.00 29.76 4.02
4857 5590 1.073284 TGGCCTCTAAAACAGGGTCAC 59.927 52.381 3.32 0.00 27.95 3.67
4858 5591 1.439679 GCCTCTAAAACAGGGTCACG 58.560 55.000 0.00 0.00 0.00 4.35
4859 5592 1.944430 GCCTCTAAAACAGGGTCACGG 60.944 57.143 0.00 0.00 0.00 4.94
4860 5593 1.338769 CCTCTAAAACAGGGTCACGGG 60.339 57.143 0.00 0.00 0.00 5.28
4861 5594 1.621814 CTCTAAAACAGGGTCACGGGA 59.378 52.381 0.00 0.00 0.00 5.14
4862 5595 2.038033 CTCTAAAACAGGGTCACGGGAA 59.962 50.000 0.00 0.00 0.00 3.97
4863 5596 2.148768 CTAAAACAGGGTCACGGGAAC 58.851 52.381 0.00 0.00 0.00 3.62
4864 5597 0.256464 AAAACAGGGTCACGGGAACA 59.744 50.000 4.43 0.00 29.99 3.18
4865 5598 0.476771 AAACAGGGTCACGGGAACAT 59.523 50.000 4.43 0.00 29.99 2.71
4866 5599 4.301505 CAGGGTCACGGGAACATG 57.698 61.111 1.61 1.61 36.04 3.21
4867 5600 2.040544 CAGGGTCACGGGAACATGC 61.041 63.158 3.62 0.00 35.53 4.06
4868 5601 3.124921 GGGTCACGGGAACATGCG 61.125 66.667 4.43 0.00 29.99 4.73
4869 5602 2.047655 GGTCACGGGAACATGCGA 60.048 61.111 0.00 0.00 0.00 5.10
4870 5603 2.100631 GGTCACGGGAACATGCGAG 61.101 63.158 0.00 0.00 0.00 5.03
4871 5604 2.100631 GTCACGGGAACATGCGAGG 61.101 63.158 0.00 0.00 0.00 4.63
4872 5605 2.819595 CACGGGAACATGCGAGGG 60.820 66.667 0.00 0.00 0.00 4.30
4873 5606 3.319198 ACGGGAACATGCGAGGGT 61.319 61.111 0.00 0.00 0.00 4.34
4874 5607 2.046314 CGGGAACATGCGAGGGTT 60.046 61.111 0.00 0.00 0.00 4.11
4875 5608 1.674322 CGGGAACATGCGAGGGTTT 60.674 57.895 0.00 0.00 0.00 3.27
4876 5609 1.644786 CGGGAACATGCGAGGGTTTC 61.645 60.000 0.00 0.00 0.00 2.78
4884 5617 3.295800 CGAGGGTTTCGCTAGGGT 58.704 61.111 6.70 0.00 43.22 4.34
4885 5618 1.595357 CGAGGGTTTCGCTAGGGTT 59.405 57.895 6.70 0.00 43.22 4.11
4886 5619 0.739813 CGAGGGTTTCGCTAGGGTTG 60.740 60.000 6.70 0.00 43.22 3.77
4887 5620 1.002502 AGGGTTTCGCTAGGGTTGC 60.003 57.895 6.70 0.00 0.00 4.17
4888 5621 1.302993 GGGTTTCGCTAGGGTTGCA 60.303 57.895 6.70 0.00 0.00 4.08
4889 5622 1.305930 GGGTTTCGCTAGGGTTGCAG 61.306 60.000 6.70 0.00 0.00 4.41
4890 5623 1.502190 GTTTCGCTAGGGTTGCAGC 59.498 57.895 6.70 0.00 0.00 5.25
4891 5624 1.674322 TTTCGCTAGGGTTGCAGCC 60.674 57.895 11.82 11.82 34.15 4.85
4892 5625 3.950794 TTCGCTAGGGTTGCAGCCG 62.951 63.158 13.95 0.78 41.56 5.52
4930 5663 2.423577 ACGAAGTTTTTGATCCCCTCG 58.576 47.619 0.00 0.00 37.78 4.63
4931 5664 1.130561 CGAAGTTTTTGATCCCCTCGC 59.869 52.381 0.00 0.00 0.00 5.03
4932 5665 1.472878 GAAGTTTTTGATCCCCTCGCC 59.527 52.381 0.00 0.00 0.00 5.54
4933 5666 0.698818 AGTTTTTGATCCCCTCGCCT 59.301 50.000 0.00 0.00 0.00 5.52
4934 5667 1.095600 GTTTTTGATCCCCTCGCCTC 58.904 55.000 0.00 0.00 0.00 4.70
4935 5668 0.034477 TTTTTGATCCCCTCGCCTCC 60.034 55.000 0.00 0.00 0.00 4.30
4936 5669 2.252072 TTTTGATCCCCTCGCCTCCG 62.252 60.000 0.00 0.00 0.00 4.63
4948 5681 4.559063 CCTCCGGCTGCCATCCTG 62.559 72.222 20.29 1.09 0.00 3.86
4949 5682 4.559063 CTCCGGCTGCCATCCTGG 62.559 72.222 20.29 11.34 41.55 4.45
4959 5692 3.491208 CCATCCTGGCTCTCAAAGG 57.509 57.895 0.00 0.00 0.00 3.11
4960 5693 0.622665 CCATCCTGGCTCTCAAAGGT 59.377 55.000 0.00 0.00 32.59 3.50
4961 5694 1.681166 CCATCCTGGCTCTCAAAGGTG 60.681 57.143 0.00 0.00 32.59 4.00
4962 5695 0.622665 ATCCTGGCTCTCAAAGGTGG 59.377 55.000 0.00 0.00 32.59 4.61
4963 5696 1.001641 CCTGGCTCTCAAAGGTGGG 60.002 63.158 0.00 0.00 0.00 4.61
4964 5697 1.001641 CTGGCTCTCAAAGGTGGGG 60.002 63.158 0.00 0.00 0.00 4.96
4965 5698 2.356667 GGCTCTCAAAGGTGGGGG 59.643 66.667 0.00 0.00 0.00 5.40
4979 5712 3.415186 GGGGGCCTCACATCTTCA 58.585 61.111 4.16 0.00 0.00 3.02
4980 5713 1.691219 GGGGGCCTCACATCTTCAA 59.309 57.895 4.16 0.00 0.00 2.69
4981 5714 0.394899 GGGGGCCTCACATCTTCAAG 60.395 60.000 4.16 0.00 0.00 3.02
4982 5715 0.620556 GGGGCCTCACATCTTCAAGA 59.379 55.000 0.84 0.00 0.00 3.02
4983 5716 1.407989 GGGGCCTCACATCTTCAAGAG 60.408 57.143 0.84 0.00 0.00 2.85
4984 5717 1.280421 GGGCCTCACATCTTCAAGAGT 59.720 52.381 0.84 0.00 0.00 3.24
4985 5718 2.626840 GGCCTCACATCTTCAAGAGTC 58.373 52.381 0.00 0.00 0.00 3.36
4986 5719 2.626840 GCCTCACATCTTCAAGAGTCC 58.373 52.381 0.00 0.00 0.00 3.85
4987 5720 2.235898 GCCTCACATCTTCAAGAGTCCT 59.764 50.000 0.00 0.00 0.00 3.85
4988 5721 3.449018 GCCTCACATCTTCAAGAGTCCTA 59.551 47.826 0.00 0.00 0.00 2.94
4989 5722 4.100808 GCCTCACATCTTCAAGAGTCCTAT 59.899 45.833 0.00 0.00 0.00 2.57
4990 5723 5.599732 CCTCACATCTTCAAGAGTCCTATG 58.400 45.833 0.00 0.00 0.00 2.23
4991 5724 5.128499 CCTCACATCTTCAAGAGTCCTATGT 59.872 44.000 0.00 0.00 0.00 2.29
4992 5725 6.214191 TCACATCTTCAAGAGTCCTATGTC 57.786 41.667 0.00 0.00 0.00 3.06
4993 5726 5.954752 TCACATCTTCAAGAGTCCTATGTCT 59.045 40.000 0.00 0.00 0.00 3.41
4994 5727 6.438741 TCACATCTTCAAGAGTCCTATGTCTT 59.561 38.462 0.00 0.00 33.09 3.01
4995 5728 7.038729 TCACATCTTCAAGAGTCCTATGTCTTT 60.039 37.037 0.00 0.00 30.31 2.52
4996 5729 7.277539 CACATCTTCAAGAGTCCTATGTCTTTC 59.722 40.741 0.00 0.00 30.31 2.62
4997 5730 5.955488 TCTTCAAGAGTCCTATGTCTTTCG 58.045 41.667 0.00 0.00 30.31 3.46
4998 5731 5.477291 TCTTCAAGAGTCCTATGTCTTTCGT 59.523 40.000 0.00 0.00 30.31 3.85
4999 5732 5.312120 TCAAGAGTCCTATGTCTTTCGTC 57.688 43.478 0.00 0.00 30.31 4.20
5000 5733 4.765339 TCAAGAGTCCTATGTCTTTCGTCA 59.235 41.667 0.00 0.00 30.31 4.35
5001 5734 5.419155 TCAAGAGTCCTATGTCTTTCGTCAT 59.581 40.000 0.00 0.00 30.31 3.06
5002 5735 5.508200 AGAGTCCTATGTCTTTCGTCATC 57.492 43.478 0.00 0.00 0.00 2.92
5003 5736 4.950475 AGAGTCCTATGTCTTTCGTCATCA 59.050 41.667 0.00 0.00 0.00 3.07
5004 5737 5.000012 AGTCCTATGTCTTTCGTCATCAC 58.000 43.478 0.00 0.00 0.00 3.06
5005 5738 4.113354 GTCCTATGTCTTTCGTCATCACC 58.887 47.826 0.00 0.00 0.00 4.02
5006 5739 4.023980 TCCTATGTCTTTCGTCATCACCT 58.976 43.478 0.00 0.00 0.00 4.00
5007 5740 5.067413 GTCCTATGTCTTTCGTCATCACCTA 59.933 44.000 0.00 0.00 0.00 3.08
5008 5741 5.299531 TCCTATGTCTTTCGTCATCACCTAG 59.700 44.000 0.00 0.00 0.00 3.02
5009 5742 5.067936 CCTATGTCTTTCGTCATCACCTAGT 59.932 44.000 0.00 0.00 0.00 2.57
5010 5743 4.174411 TGTCTTTCGTCATCACCTAGTG 57.826 45.455 0.00 0.00 34.45 2.74
5011 5744 3.824443 TGTCTTTCGTCATCACCTAGTGA 59.176 43.478 0.00 0.00 46.90 3.41
5025 5758 7.972832 TCACCTAGTGATTTTCGTATTTTGT 57.027 32.000 0.00 0.00 37.67 2.83
5026 5759 7.802738 TCACCTAGTGATTTTCGTATTTTGTG 58.197 34.615 0.00 0.00 37.67 3.33
5027 5760 7.658167 TCACCTAGTGATTTTCGTATTTTGTGA 59.342 33.333 0.00 0.00 37.67 3.58
5028 5761 7.957484 CACCTAGTGATTTTCGTATTTTGTGAG 59.043 37.037 0.00 0.00 35.23 3.51
5029 5762 7.876068 ACCTAGTGATTTTCGTATTTTGTGAGA 59.124 33.333 0.00 0.00 0.00 3.27
5030 5763 8.717821 CCTAGTGATTTTCGTATTTTGTGAGAA 58.282 33.333 0.00 0.00 0.00 2.87
5048 5781 9.706691 TTGTGAGAATAAATTTACTCTCGTTCT 57.293 29.630 24.14 16.63 38.49 3.01
5049 5782 9.706691 TGTGAGAATAAATTTACTCTCGTTCTT 57.293 29.630 24.14 3.99 38.49 2.52
5055 5788 6.872670 AAATTTACTCTCGTTCTTCTAGCG 57.127 37.500 0.00 0.00 0.00 4.26
5056 5789 5.814764 ATTTACTCTCGTTCTTCTAGCGA 57.185 39.130 0.00 0.00 38.61 4.93
5057 5790 4.596801 TTACTCTCGTTCTTCTAGCGAC 57.403 45.455 0.00 0.00 35.76 5.19
5058 5791 1.394227 ACTCTCGTTCTTCTAGCGACG 59.606 52.381 0.00 0.00 35.76 5.12
5059 5792 0.096628 TCTCGTTCTTCTAGCGACGC 59.903 55.000 13.03 13.03 35.76 5.19
5060 5793 0.862283 CTCGTTCTTCTAGCGACGCC 60.862 60.000 17.79 0.00 35.76 5.68
5061 5794 1.154093 CGTTCTTCTAGCGACGCCA 60.154 57.895 17.79 0.72 32.92 5.69
5062 5795 1.134530 CGTTCTTCTAGCGACGCCAG 61.135 60.000 17.79 13.28 32.92 4.85
5063 5796 0.802607 GTTCTTCTAGCGACGCCAGG 60.803 60.000 17.79 7.09 0.00 4.45
5064 5797 0.963856 TTCTTCTAGCGACGCCAGGA 60.964 55.000 17.79 6.08 0.00 3.86
5065 5798 0.963856 TCTTCTAGCGACGCCAGGAA 60.964 55.000 17.79 16.24 0.00 3.36
5066 5799 0.108804 CTTCTAGCGACGCCAGGAAA 60.109 55.000 17.79 2.66 0.00 3.13
5067 5800 0.535335 TTCTAGCGACGCCAGGAAAT 59.465 50.000 17.79 0.00 0.00 2.17
5068 5801 0.535335 TCTAGCGACGCCAGGAAATT 59.465 50.000 17.79 0.00 0.00 1.82
5069 5802 1.752498 TCTAGCGACGCCAGGAAATTA 59.248 47.619 17.79 0.00 0.00 1.40
5070 5803 2.128035 CTAGCGACGCCAGGAAATTAG 58.872 52.381 17.79 5.15 0.00 1.73
5071 5804 0.535335 AGCGACGCCAGGAAATTAGA 59.465 50.000 17.79 0.00 0.00 2.10
5072 5805 0.931005 GCGACGCCAGGAAATTAGAG 59.069 55.000 9.14 0.00 0.00 2.43
5073 5806 1.470979 GCGACGCCAGGAAATTAGAGA 60.471 52.381 9.14 0.00 0.00 3.10
5074 5807 2.464865 CGACGCCAGGAAATTAGAGAG 58.535 52.381 0.00 0.00 0.00 3.20
5075 5808 2.159226 CGACGCCAGGAAATTAGAGAGT 60.159 50.000 0.00 0.00 0.00 3.24
5076 5809 3.676324 CGACGCCAGGAAATTAGAGAGTT 60.676 47.826 0.00 0.00 0.00 3.01
5077 5810 4.254492 GACGCCAGGAAATTAGAGAGTTT 58.746 43.478 0.00 0.00 0.00 2.66
5078 5811 4.652822 ACGCCAGGAAATTAGAGAGTTTT 58.347 39.130 0.00 0.00 0.00 2.43
5079 5812 4.695928 ACGCCAGGAAATTAGAGAGTTTTC 59.304 41.667 0.00 0.00 0.00 2.29
5080 5813 4.938226 CGCCAGGAAATTAGAGAGTTTTCT 59.062 41.667 0.00 0.00 36.01 2.52
5081 5814 5.163814 CGCCAGGAAATTAGAGAGTTTTCTG 60.164 44.000 0.00 0.00 39.55 3.02
5082 5815 5.707764 GCCAGGAAATTAGAGAGTTTTCTGT 59.292 40.000 0.00 0.00 38.64 3.41
5083 5816 6.128145 GCCAGGAAATTAGAGAGTTTTCTGTC 60.128 42.308 0.00 0.00 38.64 3.51
5084 5817 6.372937 CCAGGAAATTAGAGAGTTTTCTGTCC 59.627 42.308 5.66 0.00 38.64 4.02
5085 5818 7.164803 CAGGAAATTAGAGAGTTTTCTGTCCT 58.835 38.462 0.00 0.00 40.55 3.85
5086 5819 7.333174 CAGGAAATTAGAGAGTTTTCTGTCCTC 59.667 40.741 0.00 0.00 40.55 3.71
5087 5820 6.311690 GGAAATTAGAGAGTTTTCTGTCCTCG 59.688 42.308 0.00 0.00 40.55 4.63
5088 5821 5.986501 ATTAGAGAGTTTTCTGTCCTCGT 57.013 39.130 0.00 0.00 40.55 4.18
5089 5822 7.463961 AATTAGAGAGTTTTCTGTCCTCGTA 57.536 36.000 0.00 0.00 40.55 3.43
5090 5823 6.497785 TTAGAGAGTTTTCTGTCCTCGTAG 57.502 41.667 0.00 0.00 40.55 3.51
5091 5824 4.653868 AGAGAGTTTTCTGTCCTCGTAGA 58.346 43.478 0.00 0.00 40.55 2.59
5092 5825 5.258051 AGAGAGTTTTCTGTCCTCGTAGAT 58.742 41.667 0.00 0.00 40.55 1.98
5093 5826 5.355910 AGAGAGTTTTCTGTCCTCGTAGATC 59.644 44.000 0.00 0.00 40.55 2.75
5094 5827 4.399934 AGAGTTTTCTGTCCTCGTAGATCC 59.600 45.833 0.00 0.00 29.71 3.36
5095 5828 3.128938 AGTTTTCTGTCCTCGTAGATCCG 59.871 47.826 0.00 0.00 33.89 4.18
5096 5829 2.704464 TTCTGTCCTCGTAGATCCGA 57.296 50.000 0.00 0.00 33.89 4.55
5097 5830 2.932855 TCTGTCCTCGTAGATCCGAT 57.067 50.000 0.00 0.00 36.08 4.18
5098 5831 3.210232 TCTGTCCTCGTAGATCCGATT 57.790 47.619 0.00 0.00 36.08 3.34
5099 5832 4.347360 TCTGTCCTCGTAGATCCGATTA 57.653 45.455 0.00 0.00 36.08 1.75
5100 5833 4.907809 TCTGTCCTCGTAGATCCGATTAT 58.092 43.478 0.00 0.00 36.08 1.28
5101 5834 5.314529 TCTGTCCTCGTAGATCCGATTATT 58.685 41.667 0.00 0.00 36.08 1.40
5102 5835 5.411977 TCTGTCCTCGTAGATCCGATTATTC 59.588 44.000 0.00 0.00 36.08 1.75
5103 5836 4.153655 TGTCCTCGTAGATCCGATTATTCG 59.846 45.833 0.02 0.02 39.96 3.34
5119 5852 8.758633 CGATTATTCGGACCTAATGAGTTTAT 57.241 34.615 1.51 0.00 41.74 1.40
5120 5853 8.648097 CGATTATTCGGACCTAATGAGTTTATG 58.352 37.037 1.51 0.00 41.74 1.90
5121 5854 9.490379 GATTATTCGGACCTAATGAGTTTATGT 57.510 33.333 1.51 0.00 0.00 2.29
5122 5855 9.847224 ATTATTCGGACCTAATGAGTTTATGTT 57.153 29.630 1.51 0.00 0.00 2.71
5123 5856 6.978343 TTCGGACCTAATGAGTTTATGTTG 57.022 37.500 0.00 0.00 0.00 3.33
5124 5857 5.424757 TCGGACCTAATGAGTTTATGTTGG 58.575 41.667 0.00 0.00 0.00 3.77
5125 5858 5.046159 TCGGACCTAATGAGTTTATGTTGGT 60.046 40.000 0.00 0.00 0.00 3.67
5126 5859 5.064707 CGGACCTAATGAGTTTATGTTGGTG 59.935 44.000 0.00 0.00 0.00 4.17
5127 5860 5.944007 GGACCTAATGAGTTTATGTTGGTGT 59.056 40.000 0.00 0.00 0.00 4.16
5128 5861 6.093633 GGACCTAATGAGTTTATGTTGGTGTC 59.906 42.308 0.00 0.00 0.00 3.67
5129 5862 6.539173 ACCTAATGAGTTTATGTTGGTGTCA 58.461 36.000 0.00 0.00 0.00 3.58
5130 5863 7.001674 ACCTAATGAGTTTATGTTGGTGTCAA 58.998 34.615 0.00 0.00 0.00 3.18
5131 5864 7.504238 ACCTAATGAGTTTATGTTGGTGTCAAA 59.496 33.333 0.00 0.00 34.28 2.69
5132 5865 8.356657 CCTAATGAGTTTATGTTGGTGTCAAAA 58.643 33.333 0.00 0.00 34.28 2.44
5133 5866 9.743057 CTAATGAGTTTATGTTGGTGTCAAAAA 57.257 29.630 0.00 0.00 34.28 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.148916 ACTTCATCGTGCGACTTCAA 57.851 45.000 0.00 0.00 0.00 2.69
1 2 1.792367 CAACTTCATCGTGCGACTTCA 59.208 47.619 0.00 0.00 0.00 3.02
2 3 1.126846 CCAACTTCATCGTGCGACTTC 59.873 52.381 0.00 0.00 0.00 3.01
3 4 1.148310 CCAACTTCATCGTGCGACTT 58.852 50.000 0.00 0.00 0.00 3.01
4 5 1.291877 GCCAACTTCATCGTGCGACT 61.292 55.000 0.00 0.00 0.00 4.18
5 6 1.132640 GCCAACTTCATCGTGCGAC 59.867 57.895 0.00 0.00 0.00 5.19
6 7 2.032634 GGCCAACTTCATCGTGCGA 61.033 57.895 0.00 0.00 0.00 5.10
7 8 1.577328 AAGGCCAACTTCATCGTGCG 61.577 55.000 5.01 0.00 32.85 5.34
8 9 1.448985 TAAGGCCAACTTCATCGTGC 58.551 50.000 5.01 0.00 40.64 5.34
9 10 3.009723 ACATAAGGCCAACTTCATCGTG 58.990 45.455 5.01 0.00 40.64 4.35
10 11 3.270877 GACATAAGGCCAACTTCATCGT 58.729 45.455 5.01 0.00 40.64 3.73
11 12 2.614057 GGACATAAGGCCAACTTCATCG 59.386 50.000 5.01 0.00 40.64 3.84
12 13 3.891049 AGGACATAAGGCCAACTTCATC 58.109 45.455 5.01 0.00 40.64 2.92
13 14 4.322057 AAGGACATAAGGCCAACTTCAT 57.678 40.909 5.01 0.00 40.64 2.57
14 15 3.806949 AAGGACATAAGGCCAACTTCA 57.193 42.857 5.01 0.00 40.64 3.02
15 16 4.640647 CCTAAAGGACATAAGGCCAACTTC 59.359 45.833 5.01 0.00 37.78 3.01
16 17 4.291249 TCCTAAAGGACATAAGGCCAACTT 59.709 41.667 5.01 0.00 39.78 2.66
17 18 3.850173 TCCTAAAGGACATAAGGCCAACT 59.150 43.478 5.01 0.00 39.78 3.16
18 19 4.230745 TCCTAAAGGACATAAGGCCAAC 57.769 45.455 5.01 0.00 39.78 3.77
31 32 1.702957 TGGTCACCCTTGTCCTAAAGG 59.297 52.381 0.00 0.00 45.48 3.11
32 33 3.412386 CTTGGTCACCCTTGTCCTAAAG 58.588 50.000 0.00 0.00 32.51 1.85
33 34 2.107552 CCTTGGTCACCCTTGTCCTAAA 59.892 50.000 0.00 0.00 32.51 1.85
34 35 1.702957 CCTTGGTCACCCTTGTCCTAA 59.297 52.381 0.00 0.00 32.51 2.69
35 36 1.358152 CCTTGGTCACCCTTGTCCTA 58.642 55.000 0.00 0.00 32.51 2.94
36 37 0.697854 ACCTTGGTCACCCTTGTCCT 60.698 55.000 0.00 0.00 32.51 3.85
37 38 0.250770 GACCTTGGTCACCCTTGTCC 60.251 60.000 14.34 0.00 0.00 4.02
38 39 0.602905 CGACCTTGGTCACCCTTGTC 60.603 60.000 18.51 0.00 0.00 3.18
39 40 1.052124 TCGACCTTGGTCACCCTTGT 61.052 55.000 18.51 0.00 0.00 3.16
40 41 0.320771 CTCGACCTTGGTCACCCTTG 60.321 60.000 18.51 2.78 0.00 3.61
41 42 2.058675 CTCGACCTTGGTCACCCTT 58.941 57.895 18.51 0.00 0.00 3.95
45 46 0.321653 AATGGCTCGACCTTGGTCAC 60.322 55.000 18.51 7.97 40.22 3.67
69 70 1.378531 GAATATTGTGACTGCCGGCA 58.621 50.000 30.59 30.59 0.00 5.69
70 71 0.663153 GGAATATTGTGACTGCCGGC 59.337 55.000 22.73 22.73 0.00 6.13
71 72 2.036958 TGGAATATTGTGACTGCCGG 57.963 50.000 0.00 0.00 0.00 6.13
72 73 3.003689 GGATTGGAATATTGTGACTGCCG 59.996 47.826 0.00 0.00 0.00 5.69
73 74 3.319122 GGGATTGGAATATTGTGACTGCC 59.681 47.826 0.00 0.00 0.00 4.85
78 79 5.200483 GGTCTTGGGATTGGAATATTGTGA 58.800 41.667 0.00 0.00 0.00 3.58
80 81 4.207165 CGGTCTTGGGATTGGAATATTGT 58.793 43.478 0.00 0.00 0.00 2.71
81 82 3.569701 CCGGTCTTGGGATTGGAATATTG 59.430 47.826 0.00 0.00 0.00 1.90
82 83 3.832527 CCGGTCTTGGGATTGGAATATT 58.167 45.455 0.00 0.00 0.00 1.28
83 84 3.508845 CCGGTCTTGGGATTGGAATAT 57.491 47.619 0.00 0.00 0.00 1.28
243 248 1.033746 TCGGGTATCAGACGTCCCAC 61.034 60.000 13.01 4.95 39.87 4.61
244 249 0.750546 CTCGGGTATCAGACGTCCCA 60.751 60.000 13.01 0.00 39.87 4.37
292 297 2.509336 GTGGCTCGACACGGATGG 60.509 66.667 0.00 0.00 0.00 3.51
307 312 5.704053 GGTATAAATCTTATTCCCCCGTGTG 59.296 44.000 0.00 0.00 0.00 3.82
329 334 7.390440 TGAATCGTTGTTAATCTTCATCTTGGT 59.610 33.333 0.00 0.00 0.00 3.67
330 335 7.693951 GTGAATCGTTGTTAATCTTCATCTTGG 59.306 37.037 0.00 0.00 0.00 3.61
331 336 7.423598 CGTGAATCGTTGTTAATCTTCATCTTG 59.576 37.037 0.00 0.00 34.52 3.02
332 337 7.330946 TCGTGAATCGTTGTTAATCTTCATCTT 59.669 33.333 0.00 0.00 40.80 2.40
337 345 6.148270 TGTCGTGAATCGTTGTTAATCTTC 57.852 37.500 0.00 0.00 40.80 2.87
339 347 5.445939 GCATGTCGTGAATCGTTGTTAATCT 60.446 40.000 0.00 0.00 40.80 2.40
346 354 2.880822 AAGCATGTCGTGAATCGTTG 57.119 45.000 0.00 0.00 40.80 4.10
349 357 1.267038 CGGAAAGCATGTCGTGAATCG 60.267 52.381 0.00 0.00 41.41 3.34
371 379 1.153549 GCTGACCATGGACCGAGAC 60.154 63.158 21.47 0.01 0.00 3.36
431 439 3.072476 GGGGAAAAAGAAAGAAAAGGGGG 59.928 47.826 0.00 0.00 0.00 5.40
475 491 0.939419 CAGCTTTGTTTGCTTTGGCC 59.061 50.000 0.00 0.00 38.92 5.36
585 601 4.958897 TTCGGTTGGTTGGGCCGG 62.959 66.667 0.00 0.00 44.97 6.13
586 602 2.907917 TTTCGGTTGGTTGGGCCG 60.908 61.111 0.00 0.00 46.12 6.13
733 766 1.711060 CGTCTCTGTCTCGGAGGAGC 61.711 65.000 4.96 0.00 40.26 4.70
737 770 2.401592 CGCGTCTCTGTCTCGGAG 59.598 66.667 0.00 0.00 38.15 4.63
740 773 2.276994 GAGCGCGTCTCTGTCTCG 60.277 66.667 19.01 0.00 38.78 4.04
742 775 4.468615 GCGAGCGCGTCTCTGTCT 62.469 66.667 22.08 4.63 39.70 3.41
890 923 1.302949 GCCAATCCTGGTGGTAGCA 59.697 57.895 5.35 0.00 45.53 3.49
891 924 0.749454 CTGCCAATCCTGGTGGTAGC 60.749 60.000 8.20 1.10 45.53 3.58
894 927 2.036256 GCTGCCAATCCTGGTGGT 59.964 61.111 5.35 0.00 45.53 4.16
895 928 3.136123 CGCTGCCAATCCTGGTGG 61.136 66.667 0.00 0.00 45.53 4.61
896 929 3.136123 CCGCTGCCAATCCTGGTG 61.136 66.667 0.00 0.00 45.53 4.17
966 999 2.355193 GGAACAGAGGGAGCTCGCT 61.355 63.158 31.31 31.31 42.17 4.93
967 1000 2.185608 GGAACAGAGGGAGCTCGC 59.814 66.667 22.44 22.44 0.00 5.03
968 1001 1.813192 GAGGAACAGAGGGAGCTCG 59.187 63.158 7.83 0.00 0.00 5.03
969 1002 1.813192 CGAGGAACAGAGGGAGCTC 59.187 63.158 4.71 4.71 0.00 4.09
970 1003 2.355193 GCGAGGAACAGAGGGAGCT 61.355 63.158 0.00 0.00 0.00 4.09
971 1004 2.185608 GCGAGGAACAGAGGGAGC 59.814 66.667 0.00 0.00 0.00 4.70
972 1005 1.671901 GAGGCGAGGAACAGAGGGAG 61.672 65.000 0.00 0.00 0.00 4.30
973 1006 1.682684 GAGGCGAGGAACAGAGGGA 60.683 63.158 0.00 0.00 0.00 4.20
974 1007 2.896443 GAGGCGAGGAACAGAGGG 59.104 66.667 0.00 0.00 0.00 4.30
975 1008 2.492090 CGAGGCGAGGAACAGAGG 59.508 66.667 0.00 0.00 0.00 3.69
1042 1088 3.497932 GAGCAGGAGCAGCGCAAG 61.498 66.667 11.47 2.01 45.49 4.01
1221 1276 4.524316 TCGAGGACGGATTTGTAGAAAA 57.476 40.909 0.00 0.00 40.21 2.29
1266 1324 1.353103 GAATCGTTGCAGATGGCCG 59.647 57.895 0.00 0.00 43.89 6.13
1269 1327 3.123050 TGTATCGAATCGTTGCAGATGG 58.877 45.455 1.52 0.00 0.00 3.51
1278 1336 5.856986 CACGGAGATTTATGTATCGAATCGT 59.143 40.000 1.52 0.00 35.49 3.73
1283 1341 7.310664 GGAATACACGGAGATTTATGTATCGA 58.689 38.462 0.00 0.00 37.29 3.59
1302 1360 2.351157 CCCTCGTACGAATCGGGAATAC 60.351 54.545 28.47 0.00 37.05 1.89
1307 1365 2.726274 CCCCTCGTACGAATCGGG 59.274 66.667 26.49 26.49 34.62 5.14
1315 1373 2.357952 GCATGATTTTTCCCCCTCGTAC 59.642 50.000 0.00 0.00 0.00 3.67
1318 1376 0.381801 CGCATGATTTTTCCCCCTCG 59.618 55.000 0.00 0.00 0.00 4.63
1323 1381 1.134818 GTTCCCCGCATGATTTTTCCC 60.135 52.381 0.00 0.00 0.00 3.97
1324 1382 1.134818 GGTTCCCCGCATGATTTTTCC 60.135 52.381 0.00 0.00 0.00 3.13
1325 1383 1.548269 TGGTTCCCCGCATGATTTTTC 59.452 47.619 0.00 0.00 0.00 2.29
1336 1395 0.103208 CTCGAGATTCTGGTTCCCCG 59.897 60.000 6.58 0.00 0.00 5.73
1361 1420 3.532542 GGTGAATGGTACTCTAAGTGGC 58.467 50.000 0.00 0.00 0.00 5.01
1367 1426 0.742505 CGGCGGTGAATGGTACTCTA 59.257 55.000 0.00 0.00 0.00 2.43
1368 1427 1.515954 CGGCGGTGAATGGTACTCT 59.484 57.895 0.00 0.00 0.00 3.24
1369 1428 2.171725 GCGGCGGTGAATGGTACTC 61.172 63.158 9.78 0.00 0.00 2.59
1370 1429 2.125269 GCGGCGGTGAATGGTACT 60.125 61.111 9.78 0.00 0.00 2.73
1371 1430 2.435234 TGCGGCGGTGAATGGTAC 60.435 61.111 9.78 0.00 0.00 3.34
1413 1472 4.179298 CACATCCTCTGCGTATGATATGG 58.821 47.826 0.00 0.00 0.00 2.74
1425 1484 1.967066 CTACTAGGGCCACATCCTCTG 59.033 57.143 6.18 0.00 35.92 3.35
1478 1541 4.759205 CAGGGCCCCTTTTCCCCG 62.759 72.222 21.43 0.00 43.67 5.73
1486 1549 1.926426 GAACAGTATGCAGGGCCCCT 61.926 60.000 21.43 3.62 42.53 4.79
1493 1556 2.009051 TGGCAATCGAACAGTATGCAG 58.991 47.619 0.00 0.00 42.53 4.41
1579 1929 1.541147 CGACCGTGGTTACAGGAACTA 59.459 52.381 0.00 0.00 36.02 2.24
1580 1930 0.316204 CGACCGTGGTTACAGGAACT 59.684 55.000 0.00 0.00 43.88 3.01
1581 1931 0.668401 CCGACCGTGGTTACAGGAAC 60.668 60.000 0.00 0.00 37.31 3.62
1598 1948 5.258456 TGACTAGTGATTAAAGGCTACCG 57.742 43.478 0.00 0.00 0.00 4.02
1617 1967 8.483307 TTTAAACACTAGGAATCGGTATTGAC 57.517 34.615 0.00 0.00 0.00 3.18
1685 2037 2.223745 GGTGTCGAGGTAGAGATCTCC 58.776 57.143 19.30 4.90 27.58 3.71
1697 2049 3.449227 TGCTAGCCGGGTGTCGAG 61.449 66.667 18.40 6.60 42.43 4.04
1740 2093 3.891977 CGAGATTCTGGTTCCCTAGATGA 59.108 47.826 0.00 0.00 0.00 2.92
1744 2097 2.035321 GCTCGAGATTCTGGTTCCCTAG 59.965 54.545 18.75 0.00 0.00 3.02
1791 2144 6.683974 ATTAAGATTGAAATGTCCCGACAG 57.316 37.500 3.61 0.00 45.48 3.51
1814 2169 7.328737 GGGAGAAGTAGCTCACAGTTATTTAA 58.671 38.462 0.00 0.00 38.22 1.52
1818 2173 3.707102 GGGGAGAAGTAGCTCACAGTTAT 59.293 47.826 0.00 0.00 40.12 1.89
1821 2176 1.203187 TGGGGAGAAGTAGCTCACAGT 60.203 52.381 0.00 0.00 40.12 3.55
1822 2177 1.561643 TGGGGAGAAGTAGCTCACAG 58.438 55.000 0.00 0.00 40.12 3.66
1823 2178 2.254152 ATGGGGAGAAGTAGCTCACA 57.746 50.000 0.00 0.00 40.12 3.58
1824 2179 3.636153 AAATGGGGAGAAGTAGCTCAC 57.364 47.619 0.00 0.00 37.59 3.51
1837 2192 2.875296 TCCTGTGACTGAAAAATGGGG 58.125 47.619 0.00 0.00 0.00 4.96
1924 2359 0.238289 CACACGCCACATTGGTCTTC 59.762 55.000 0.00 0.00 40.46 2.87
1929 2364 0.740149 ATATGCACACGCCACATTGG 59.260 50.000 0.00 0.00 41.55 3.16
1938 2373 9.290483 CTGTAACTATCCTATAATATGCACACG 57.710 37.037 0.00 0.00 0.00 4.49
1949 2384 9.796180 GAGGAAGAACTCTGTAACTATCCTATA 57.204 37.037 0.00 0.00 35.03 1.31
1990 2425 5.797051 ACAAATTACATGCAGCCAATCTTT 58.203 33.333 0.00 0.00 0.00 2.52
2110 2548 9.019764 GTTAATATACATGCATTTCAACACACC 57.980 33.333 0.00 0.00 0.00 4.16
2130 2568 5.522460 GCATACGCAGAACCTCAAGTTAATA 59.478 40.000 0.00 0.00 37.09 0.98
2131 2569 4.332819 GCATACGCAGAACCTCAAGTTAAT 59.667 41.667 0.00 0.00 37.09 1.40
2153 2604 3.674528 TCTGCATAGAGATAGGCAAGC 57.325 47.619 0.00 0.00 36.27 4.01
2198 2649 3.429272 CCCATTTGATTGTGATGTTCCCG 60.429 47.826 0.00 0.00 0.00 5.14
2344 2796 5.106712 GGATGCAATGTCGAACTACAAAGAA 60.107 40.000 0.00 0.00 32.02 2.52
2345 2797 4.391830 GGATGCAATGTCGAACTACAAAGA 59.608 41.667 0.00 0.00 32.02 2.52
2346 2798 4.393062 AGGATGCAATGTCGAACTACAAAG 59.607 41.667 0.00 0.00 32.02 2.77
2347 2799 4.323417 AGGATGCAATGTCGAACTACAAA 58.677 39.130 0.00 0.00 32.02 2.83
2348 2800 3.937814 AGGATGCAATGTCGAACTACAA 58.062 40.909 0.00 0.00 32.02 2.41
2349 2801 3.610040 AGGATGCAATGTCGAACTACA 57.390 42.857 0.00 0.00 0.00 2.74
2350 2802 7.709269 TTTATAGGATGCAATGTCGAACTAC 57.291 36.000 0.00 0.00 0.00 2.73
2351 2803 7.985184 AGTTTTATAGGATGCAATGTCGAACTA 59.015 33.333 0.00 0.00 0.00 2.24
2352 2804 6.823689 AGTTTTATAGGATGCAATGTCGAACT 59.176 34.615 0.00 0.00 0.00 3.01
2353 2805 7.016361 AGTTTTATAGGATGCAATGTCGAAC 57.984 36.000 0.00 0.00 0.00 3.95
2354 2806 7.335673 TGAAGTTTTATAGGATGCAATGTCGAA 59.664 33.333 0.00 0.00 0.00 3.71
2355 2807 6.821160 TGAAGTTTTATAGGATGCAATGTCGA 59.179 34.615 0.00 0.00 0.00 4.20
2356 2808 7.015226 TGAAGTTTTATAGGATGCAATGTCG 57.985 36.000 0.00 0.00 0.00 4.35
2357 2809 7.989826 ACTGAAGTTTTATAGGATGCAATGTC 58.010 34.615 0.00 0.00 0.00 3.06
2358 2810 7.944729 ACTGAAGTTTTATAGGATGCAATGT 57.055 32.000 0.00 0.00 0.00 2.71
2359 2811 7.917505 GGAACTGAAGTTTTATAGGATGCAATG 59.082 37.037 0.00 0.00 38.56 2.82
2360 2812 7.615365 TGGAACTGAAGTTTTATAGGATGCAAT 59.385 33.333 0.00 0.00 38.56 3.56
2361 2813 6.945435 TGGAACTGAAGTTTTATAGGATGCAA 59.055 34.615 0.00 0.00 38.56 4.08
2362 2814 6.480763 TGGAACTGAAGTTTTATAGGATGCA 58.519 36.000 0.00 0.00 38.56 3.96
2363 2815 7.391148 TTGGAACTGAAGTTTTATAGGATGC 57.609 36.000 0.00 0.00 38.56 3.91
2364 2816 8.960591 ACATTGGAACTGAAGTTTTATAGGATG 58.039 33.333 0.00 0.04 38.56 3.51
2365 2817 8.960591 CACATTGGAACTGAAGTTTTATAGGAT 58.039 33.333 0.00 0.00 38.56 3.24
2366 2818 7.942341 ACACATTGGAACTGAAGTTTTATAGGA 59.058 33.333 0.00 0.00 38.56 2.94
2367 2819 8.023128 CACACATTGGAACTGAAGTTTTATAGG 58.977 37.037 0.00 0.00 38.56 2.57
2368 2820 7.538678 GCACACATTGGAACTGAAGTTTTATAG 59.461 37.037 0.00 0.00 38.56 1.31
2369 2821 7.013750 TGCACACATTGGAACTGAAGTTTTATA 59.986 33.333 0.00 0.00 38.56 0.98
2370 2822 6.183360 TGCACACATTGGAACTGAAGTTTTAT 60.183 34.615 0.00 0.00 38.56 1.40
2371 2823 5.126222 TGCACACATTGGAACTGAAGTTTTA 59.874 36.000 0.00 0.00 38.56 1.52
2372 2824 4.081752 TGCACACATTGGAACTGAAGTTTT 60.082 37.500 0.00 0.00 38.56 2.43
2373 2825 3.446873 TGCACACATTGGAACTGAAGTTT 59.553 39.130 0.00 0.00 38.56 2.66
2374 2826 3.023119 TGCACACATTGGAACTGAAGTT 58.977 40.909 0.00 0.00 41.64 2.66
2375 2827 2.653726 TGCACACATTGGAACTGAAGT 58.346 42.857 0.00 0.00 0.00 3.01
2376 2828 3.713858 TTGCACACATTGGAACTGAAG 57.286 42.857 0.00 0.00 29.00 3.02
2464 2950 3.254166 AGTGATGTGCAGCGAATCTTTTT 59.746 39.130 8.24 0.00 0.00 1.94
2465 2951 2.816087 AGTGATGTGCAGCGAATCTTTT 59.184 40.909 8.24 0.00 0.00 2.27
2466 2952 2.430465 AGTGATGTGCAGCGAATCTTT 58.570 42.857 8.24 0.00 0.00 2.52
2467 2953 2.105006 AGTGATGTGCAGCGAATCTT 57.895 45.000 8.24 0.00 0.00 2.40
2468 2954 1.736126 CAAGTGATGTGCAGCGAATCT 59.264 47.619 8.24 0.00 0.00 2.40
2469 2955 1.202110 CCAAGTGATGTGCAGCGAATC 60.202 52.381 0.00 1.00 0.00 2.52
2470 2956 0.806868 CCAAGTGATGTGCAGCGAAT 59.193 50.000 0.00 0.00 0.00 3.34
2471 2957 1.855213 GCCAAGTGATGTGCAGCGAA 61.855 55.000 0.00 0.00 0.00 4.70
2472 2958 2.327343 GCCAAGTGATGTGCAGCGA 61.327 57.895 0.00 0.00 0.00 4.93
2473 2959 1.859427 AAGCCAAGTGATGTGCAGCG 61.859 55.000 0.00 0.00 0.00 5.18
2474 2960 0.109412 GAAGCCAAGTGATGTGCAGC 60.109 55.000 0.00 0.00 0.00 5.25
2475 2961 1.241165 TGAAGCCAAGTGATGTGCAG 58.759 50.000 0.00 0.00 0.00 4.41
2476 2962 1.337703 GTTGAAGCCAAGTGATGTGCA 59.662 47.619 0.00 0.00 32.06 4.57
2477 2963 1.337703 TGTTGAAGCCAAGTGATGTGC 59.662 47.619 0.00 0.00 32.06 4.57
2478 2964 3.928727 ATGTTGAAGCCAAGTGATGTG 57.071 42.857 0.00 0.00 32.06 3.21
2479 2965 4.942761 AAATGTTGAAGCCAAGTGATGT 57.057 36.364 0.00 0.00 32.06 3.06
2480 2966 6.860080 AGATAAATGTTGAAGCCAAGTGATG 58.140 36.000 0.00 0.00 32.06 3.07
2481 2967 7.395489 AGAAGATAAATGTTGAAGCCAAGTGAT 59.605 33.333 0.00 0.00 32.06 3.06
2482 2968 6.716628 AGAAGATAAATGTTGAAGCCAAGTGA 59.283 34.615 0.00 0.00 32.06 3.41
2483 2969 6.917533 AGAAGATAAATGTTGAAGCCAAGTG 58.082 36.000 0.00 0.00 32.06 3.16
2484 2970 7.530426 AAGAAGATAAATGTTGAAGCCAAGT 57.470 32.000 0.00 0.00 32.06 3.16
2559 3045 2.290387 TGTAAGGGTTCTTAATGCCGCA 60.290 45.455 0.00 0.00 37.24 5.69
2608 3094 7.121911 CAGAACATCAACAGCAGAATAATACG 58.878 38.462 0.00 0.00 0.00 3.06
2906 3392 0.920763 TGGATCTTGCCCCCATGAGT 60.921 55.000 0.00 0.00 0.00 3.41
2915 3401 1.404391 CTGCATTGACTGGATCTTGCC 59.596 52.381 0.00 0.00 36.74 4.52
2975 3461 3.120199 CGGTGCTTTCACTGTCCTATTTG 60.120 47.826 0.00 0.00 43.06 2.32
2976 3462 3.074412 CGGTGCTTTCACTGTCCTATTT 58.926 45.455 0.00 0.00 43.06 1.40
3083 3569 2.897326 TGAGTTGTTCTCCTTCCATCGA 59.103 45.455 0.00 0.00 42.12 3.59
3326 3825 1.659098 GGGCAGTCAACTATCGTTTCG 59.341 52.381 0.00 0.00 0.00 3.46
3350 3849 2.674033 TGGCAGCCACATGAGCAC 60.674 61.111 11.22 6.23 0.00 4.40
3353 3852 0.607217 TGTTCTGGCAGCCACATGAG 60.607 55.000 11.22 0.00 0.00 2.90
3368 3867 2.560981 CCCAGGGTTGGTTATGTTGTTC 59.439 50.000 0.00 0.00 43.40 3.18
3371 3870 2.446435 CTCCCAGGGTTGGTTATGTTG 58.554 52.381 5.01 0.00 43.40 3.33
3442 3941 8.915654 GCAAACACATTTAGAAATAGTTTCAGG 58.084 33.333 11.66 6.09 42.10 3.86
3474 3973 5.881923 AGTAAGGCGAATTAACCCTATCA 57.118 39.130 0.00 0.00 0.00 2.15
3555 4054 0.932955 TGATTGGGCACATATGGGGT 59.067 50.000 7.18 0.00 0.00 4.95
3765 4264 8.912988 CATTTTAGTTATGGAGGGATAAAGCAA 58.087 33.333 0.00 0.00 0.00 3.91
3767 4266 8.352942 CACATTTTAGTTATGGAGGGATAAAGC 58.647 37.037 0.00 0.00 0.00 3.51
3771 4270 8.154856 GCTACACATTTTAGTTATGGAGGGATA 58.845 37.037 0.00 0.00 0.00 2.59
3772 4271 6.998673 GCTACACATTTTAGTTATGGAGGGAT 59.001 38.462 0.00 0.00 0.00 3.85
3774 4273 6.119536 TGCTACACATTTTAGTTATGGAGGG 58.880 40.000 0.00 0.00 0.00 4.30
3775 4274 7.283127 ACATGCTACACATTTTAGTTATGGAGG 59.717 37.037 0.00 0.00 36.64 4.30
3776 4275 8.213518 ACATGCTACACATTTTAGTTATGGAG 57.786 34.615 0.00 0.00 36.64 3.86
3777 4276 9.104965 GTACATGCTACACATTTTAGTTATGGA 57.895 33.333 0.00 0.00 36.64 3.41
3989 4657 2.163390 CATGACGCAGCTCTCACCG 61.163 63.158 0.00 0.00 0.00 4.94
4013 4681 0.746659 GCCATGGGTACAAATCTGGC 59.253 55.000 15.13 7.96 42.00 4.85
4130 4798 4.067972 TGACTTCCCGCAGTATTTATCC 57.932 45.455 0.00 0.00 0.00 2.59
4155 4823 0.745845 AGCGCTCAATGGGTCATGAC 60.746 55.000 17.91 17.91 0.00 3.06
4156 4824 0.745486 CAGCGCTCAATGGGTCATGA 60.745 55.000 7.13 0.00 0.00 3.07
4160 4828 2.456119 CGTCAGCGCTCAATGGGTC 61.456 63.158 7.13 0.00 0.00 4.46
4161 4829 2.434884 CGTCAGCGCTCAATGGGT 60.435 61.111 7.13 0.00 0.00 4.51
4162 4830 2.434884 ACGTCAGCGCTCAATGGG 60.435 61.111 7.13 0.00 42.83 4.00
4206 4874 3.057033 AGTCAGCTTTTGATGCAACATCC 60.057 43.478 0.00 0.00 38.29 3.51
4267 4942 3.947196 TGCAAGAAACACAAGATGTCAGT 59.053 39.130 0.00 0.00 42.31 3.41
4268 4943 4.556942 TGCAAGAAACACAAGATGTCAG 57.443 40.909 0.00 0.00 42.31 3.51
4269 4944 4.398988 ACTTGCAAGAAACACAAGATGTCA 59.601 37.500 32.50 0.00 42.31 3.58
4272 4947 5.806502 TCAAACTTGCAAGAAACACAAGATG 59.193 36.000 32.50 13.98 42.71 2.90
4273 4948 5.964758 TCAAACTTGCAAGAAACACAAGAT 58.035 33.333 32.50 3.08 42.71 2.40
4363 5039 9.382275 GGCAAACATGGATTCAAACTTATTTAT 57.618 29.630 0.00 0.00 0.00 1.40
4366 5042 6.172630 GGGCAAACATGGATTCAAACTTATT 58.827 36.000 0.00 0.00 0.00 1.40
4367 5043 5.624281 CGGGCAAACATGGATTCAAACTTAT 60.624 40.000 0.00 0.00 0.00 1.73
4404 5080 4.112341 CTTCCAAGGCTGCTGCGC 62.112 66.667 9.65 0.00 40.82 6.09
4405 5081 2.359107 TCTTCCAAGGCTGCTGCG 60.359 61.111 9.65 0.00 40.82 5.18
4406 5082 2.045131 CCTCTTCCAAGGCTGCTGC 61.045 63.158 7.10 7.10 38.76 5.25
4407 5083 4.315588 CCTCTTCCAAGGCTGCTG 57.684 61.111 0.00 0.00 0.00 4.41
4417 5149 4.537433 AGCCGCATCGCCTCTTCC 62.537 66.667 0.00 0.00 0.00 3.46
4439 5171 2.597217 CCGGCAAGCCCAGTTGAA 60.597 61.111 5.34 0.00 0.00 2.69
4473 5205 4.988598 CGAGCAGCAACACCCCGT 62.989 66.667 0.00 0.00 0.00 5.28
4478 5210 2.666190 TCAGCCGAGCAGCAACAC 60.666 61.111 0.00 0.00 34.23 3.32
4490 5222 1.961277 CCACAACACTCGGTCAGCC 60.961 63.158 0.00 0.00 0.00 4.85
4492 5224 1.273606 AGATCCACAACACTCGGTCAG 59.726 52.381 0.00 0.00 0.00 3.51
4493 5225 1.000843 CAGATCCACAACACTCGGTCA 59.999 52.381 0.00 0.00 0.00 4.02
4494 5226 1.673033 CCAGATCCACAACACTCGGTC 60.673 57.143 0.00 0.00 0.00 4.79
4496 5228 1.021390 GCCAGATCCACAACACTCGG 61.021 60.000 0.00 0.00 0.00 4.63
4497 5229 1.354337 CGCCAGATCCACAACACTCG 61.354 60.000 0.00 0.00 0.00 4.18
4498 5230 1.639298 GCGCCAGATCCACAACACTC 61.639 60.000 0.00 0.00 0.00 3.51
4499 5231 1.672356 GCGCCAGATCCACAACACT 60.672 57.895 0.00 0.00 0.00 3.55
4500 5232 2.690778 GGCGCCAGATCCACAACAC 61.691 63.158 24.80 0.00 0.00 3.32
4501 5233 2.359850 GGCGCCAGATCCACAACA 60.360 61.111 24.80 0.00 0.00 3.33
4502 5234 2.045926 AGGCGCCAGATCCACAAC 60.046 61.111 31.54 0.00 0.00 3.32
4503 5235 2.046023 CAGGCGCCAGATCCACAA 60.046 61.111 31.54 0.00 0.00 3.33
4526 5258 1.227176 GACCACTACCCGCGGATTC 60.227 63.158 30.73 0.00 0.00 2.52
4527 5259 1.262640 AAGACCACTACCCGCGGATT 61.263 55.000 30.73 16.21 0.00 3.01
4529 5261 0.396139 ATAAGACCACTACCCGCGGA 60.396 55.000 30.73 6.52 0.00 5.54
4530 5262 1.268899 CTATAAGACCACTACCCGCGG 59.731 57.143 21.04 21.04 0.00 6.46
4532 5264 1.962100 AGCTATAAGACCACTACCCGC 59.038 52.381 0.00 0.00 0.00 6.13
4533 5265 2.296471 CCAGCTATAAGACCACTACCCG 59.704 54.545 0.00 0.00 0.00 5.28
4537 5269 3.040655 TGGCCAGCTATAAGACCACTA 57.959 47.619 0.00 0.00 0.00 2.74
4543 5275 1.134220 CCCGTTTGGCCAGCTATAAGA 60.134 52.381 5.11 0.00 0.00 2.10
4619 5351 0.177141 GCCCGCTTAGTCATGTACCA 59.823 55.000 0.00 0.00 0.00 3.25
4657 5389 3.842126 CACACATCTGCGCCGTCG 61.842 66.667 4.18 0.00 39.07 5.12
4679 5411 2.359107 ATGTCGTGCCAGCCACAG 60.359 61.111 0.00 0.00 44.91 3.66
4681 5413 3.434319 CCATGTCGTGCCAGCCAC 61.434 66.667 0.00 0.00 41.15 5.01
4693 5425 3.576550 AGAAAACAATAAACGGGCCATGT 59.423 39.130 4.39 0.00 0.00 3.21
4751 5483 3.326588 GGCCTTTTGGACTATTTTTGGGT 59.673 43.478 0.00 0.00 46.73 4.51
4769 5501 2.361610 CCCATGTGCTTTCGGCCT 60.362 61.111 0.00 0.00 40.92 5.19
4773 5505 1.503542 GTCAGCCCATGTGCTTTCG 59.496 57.895 0.00 0.00 40.32 3.46
4774 5506 0.895100 TGGTCAGCCCATGTGCTTTC 60.895 55.000 0.00 0.00 40.32 2.62
4788 5521 1.900016 ACGACACGTAGGCTGGTCA 60.900 57.895 0.00 0.00 38.73 4.02
4791 5524 2.809601 GCACGACACGTAGGCTGG 60.810 66.667 0.00 0.00 38.32 4.85
4792 5525 2.809601 GGCACGACACGTAGGCTG 60.810 66.667 0.00 0.00 38.32 4.85
4793 5526 3.282745 CTGGCACGACACGTAGGCT 62.283 63.158 15.64 0.00 38.32 4.58
4796 5529 2.809601 GCCTGGCACGACACGTAG 60.810 66.667 15.17 0.00 38.32 3.51
4818 5551 3.070576 GGTGGACAATGGCCCAGC 61.071 66.667 1.02 6.52 42.67 4.85
4819 5552 1.077265 AAGGTGGACAATGGCCCAG 59.923 57.895 1.02 0.00 32.28 4.45
4820 5553 1.228831 CAAGGTGGACAATGGCCCA 60.229 57.895 1.02 0.00 0.00 5.36
4821 5554 1.984026 CCAAGGTGGACAATGGCCC 60.984 63.158 1.02 0.00 40.96 5.80
4822 5555 3.698765 CCAAGGTGGACAATGGCC 58.301 61.111 0.00 0.00 40.96 5.36
4830 5563 1.777878 TGTTTTAGAGGCCAAGGTGGA 59.222 47.619 5.01 0.00 40.96 4.02
4831 5564 2.162681 CTGTTTTAGAGGCCAAGGTGG 58.837 52.381 5.01 0.00 41.55 4.61
4832 5565 2.162681 CCTGTTTTAGAGGCCAAGGTG 58.837 52.381 5.01 0.00 0.00 4.00
4833 5566 1.075536 CCCTGTTTTAGAGGCCAAGGT 59.924 52.381 5.01 0.00 0.00 3.50
4834 5567 1.075536 ACCCTGTTTTAGAGGCCAAGG 59.924 52.381 5.01 0.00 0.00 3.61
4835 5568 2.224769 TGACCCTGTTTTAGAGGCCAAG 60.225 50.000 5.01 0.00 0.00 3.61
4836 5569 1.777878 TGACCCTGTTTTAGAGGCCAA 59.222 47.619 5.01 0.00 0.00 4.52
4837 5570 1.073284 GTGACCCTGTTTTAGAGGCCA 59.927 52.381 5.01 0.00 0.00 5.36
4838 5571 1.822506 GTGACCCTGTTTTAGAGGCC 58.177 55.000 0.00 0.00 0.00 5.19
4839 5572 1.439679 CGTGACCCTGTTTTAGAGGC 58.560 55.000 0.00 0.00 0.00 4.70
4840 5573 1.338769 CCCGTGACCCTGTTTTAGAGG 60.339 57.143 0.00 0.00 0.00 3.69
4841 5574 1.621814 TCCCGTGACCCTGTTTTAGAG 59.378 52.381 0.00 0.00 0.00 2.43
4842 5575 1.719529 TCCCGTGACCCTGTTTTAGA 58.280 50.000 0.00 0.00 0.00 2.10
4843 5576 2.148768 GTTCCCGTGACCCTGTTTTAG 58.851 52.381 0.00 0.00 0.00 1.85
4844 5577 1.489649 TGTTCCCGTGACCCTGTTTTA 59.510 47.619 0.00 0.00 0.00 1.52
4845 5578 0.256464 TGTTCCCGTGACCCTGTTTT 59.744 50.000 0.00 0.00 0.00 2.43
4846 5579 0.476771 ATGTTCCCGTGACCCTGTTT 59.523 50.000 0.00 0.00 0.00 2.83
4847 5580 0.250727 CATGTTCCCGTGACCCTGTT 60.251 55.000 0.00 0.00 0.00 3.16
4848 5581 1.374947 CATGTTCCCGTGACCCTGT 59.625 57.895 0.00 0.00 0.00 4.00
4849 5582 2.040544 GCATGTTCCCGTGACCCTG 61.041 63.158 0.00 0.00 0.00 4.45
4850 5583 2.351276 GCATGTTCCCGTGACCCT 59.649 61.111 0.00 0.00 0.00 4.34
4851 5584 3.124921 CGCATGTTCCCGTGACCC 61.125 66.667 0.00 0.00 0.00 4.46
4852 5585 2.047655 TCGCATGTTCCCGTGACC 60.048 61.111 0.00 0.00 0.00 4.02
4853 5586 2.100631 CCTCGCATGTTCCCGTGAC 61.101 63.158 0.00 0.00 0.00 3.67
4854 5587 2.264480 CCTCGCATGTTCCCGTGA 59.736 61.111 0.00 0.00 0.00 4.35
4855 5588 2.819595 CCCTCGCATGTTCCCGTG 60.820 66.667 0.00 0.00 0.00 4.94
4856 5589 2.406002 AAACCCTCGCATGTTCCCGT 62.406 55.000 0.00 0.00 0.00 5.28
4857 5590 1.644786 GAAACCCTCGCATGTTCCCG 61.645 60.000 0.00 0.00 0.00 5.14
4858 5591 1.644786 CGAAACCCTCGCATGTTCCC 61.645 60.000 0.00 0.00 41.49 3.97
4859 5592 1.794222 CGAAACCCTCGCATGTTCC 59.206 57.895 0.00 0.00 41.49 3.62
4868 5601 1.025113 GCAACCCTAGCGAAACCCTC 61.025 60.000 0.00 0.00 0.00 4.30
4869 5602 1.002502 GCAACCCTAGCGAAACCCT 60.003 57.895 0.00 0.00 0.00 4.34
4870 5603 1.302993 TGCAACCCTAGCGAAACCC 60.303 57.895 0.00 0.00 33.85 4.11
4871 5604 1.923227 GCTGCAACCCTAGCGAAACC 61.923 60.000 0.00 0.00 33.85 3.27
4872 5605 1.502190 GCTGCAACCCTAGCGAAAC 59.498 57.895 0.00 0.00 33.85 2.78
4873 5606 1.674322 GGCTGCAACCCTAGCGAAA 60.674 57.895 0.50 0.00 40.78 3.46
4874 5607 2.046314 GGCTGCAACCCTAGCGAA 60.046 61.111 0.50 0.00 40.78 4.70
4875 5608 4.451150 CGGCTGCAACCCTAGCGA 62.451 66.667 0.00 0.00 40.78 4.93
4901 5634 2.358193 AAAAACTTCGTTGGGGCGGC 62.358 55.000 0.00 0.00 0.00 6.53
4902 5635 0.596341 CAAAAACTTCGTTGGGGCGG 60.596 55.000 0.00 0.00 0.00 6.13
4903 5636 0.382515 TCAAAAACTTCGTTGGGGCG 59.617 50.000 0.00 0.00 0.00 6.13
4904 5637 2.609491 GGATCAAAAACTTCGTTGGGGC 60.609 50.000 0.00 0.00 0.00 5.80
4905 5638 2.029380 GGGATCAAAAACTTCGTTGGGG 60.029 50.000 0.00 0.00 0.00 4.96
4906 5639 2.029380 GGGGATCAAAAACTTCGTTGGG 60.029 50.000 0.00 0.00 0.00 4.12
4907 5640 2.890945 AGGGGATCAAAAACTTCGTTGG 59.109 45.455 0.00 0.00 0.00 3.77
4908 5641 3.364964 CGAGGGGATCAAAAACTTCGTTG 60.365 47.826 0.00 0.00 0.00 4.10
4909 5642 2.812011 CGAGGGGATCAAAAACTTCGTT 59.188 45.455 0.00 0.00 0.00 3.85
4910 5643 2.423577 CGAGGGGATCAAAAACTTCGT 58.576 47.619 0.00 0.00 0.00 3.85
4911 5644 1.130561 GCGAGGGGATCAAAAACTTCG 59.869 52.381 0.00 0.00 0.00 3.79
4912 5645 1.472878 GGCGAGGGGATCAAAAACTTC 59.527 52.381 0.00 0.00 0.00 3.01
4913 5646 1.075536 AGGCGAGGGGATCAAAAACTT 59.924 47.619 0.00 0.00 0.00 2.66
4914 5647 0.698818 AGGCGAGGGGATCAAAAACT 59.301 50.000 0.00 0.00 0.00 2.66
4915 5648 1.095600 GAGGCGAGGGGATCAAAAAC 58.904 55.000 0.00 0.00 0.00 2.43
4916 5649 0.034477 GGAGGCGAGGGGATCAAAAA 60.034 55.000 0.00 0.00 0.00 1.94
4917 5650 1.607612 GGAGGCGAGGGGATCAAAA 59.392 57.895 0.00 0.00 0.00 2.44
4918 5651 2.731571 CGGAGGCGAGGGGATCAAA 61.732 63.158 0.00 0.00 0.00 2.69
4919 5652 3.154473 CGGAGGCGAGGGGATCAA 61.154 66.667 0.00 0.00 0.00 2.57
4942 5675 1.681166 CCACCTTTGAGAGCCAGGATG 60.681 57.143 0.00 0.00 0.00 3.51
4943 5676 0.622665 CCACCTTTGAGAGCCAGGAT 59.377 55.000 0.00 0.00 0.00 3.24
4944 5677 1.492133 CCCACCTTTGAGAGCCAGGA 61.492 60.000 0.00 0.00 0.00 3.86
4945 5678 1.001641 CCCACCTTTGAGAGCCAGG 60.002 63.158 0.00 0.00 0.00 4.45
4946 5679 1.001641 CCCCACCTTTGAGAGCCAG 60.002 63.158 0.00 0.00 0.00 4.85
4947 5680 2.538141 CCCCCACCTTTGAGAGCCA 61.538 63.158 0.00 0.00 0.00 4.75
4948 5681 2.356667 CCCCCACCTTTGAGAGCC 59.643 66.667 0.00 0.00 0.00 4.70
4962 5695 0.394899 CTTGAAGATGTGAGGCCCCC 60.395 60.000 0.00 0.00 0.00 5.40
4963 5696 0.620556 TCTTGAAGATGTGAGGCCCC 59.379 55.000 0.00 0.00 0.00 5.80
4964 5697 1.280421 ACTCTTGAAGATGTGAGGCCC 59.720 52.381 0.00 0.00 0.00 5.80
4965 5698 2.626840 GACTCTTGAAGATGTGAGGCC 58.373 52.381 0.00 0.00 0.00 5.19
4966 5699 2.235898 AGGACTCTTGAAGATGTGAGGC 59.764 50.000 0.00 0.00 34.05 4.70
4967 5700 5.128499 ACATAGGACTCTTGAAGATGTGAGG 59.872 44.000 0.00 0.00 0.00 3.86
4968 5701 6.096705 AGACATAGGACTCTTGAAGATGTGAG 59.903 42.308 1.98 0.00 0.00 3.51
4969 5702 5.954752 AGACATAGGACTCTTGAAGATGTGA 59.045 40.000 1.98 0.00 0.00 3.58
4970 5703 6.219417 AGACATAGGACTCTTGAAGATGTG 57.781 41.667 1.98 0.00 0.00 3.21
4971 5704 6.865834 AAGACATAGGACTCTTGAAGATGT 57.134 37.500 0.00 0.00 0.00 3.06
4972 5705 6.475076 CGAAAGACATAGGACTCTTGAAGATG 59.525 42.308 0.00 0.00 0.00 2.90
4973 5706 6.153680 ACGAAAGACATAGGACTCTTGAAGAT 59.846 38.462 0.00 0.00 0.00 2.40
4974 5707 5.477291 ACGAAAGACATAGGACTCTTGAAGA 59.523 40.000 0.00 0.00 0.00 2.87
4975 5708 5.715070 ACGAAAGACATAGGACTCTTGAAG 58.285 41.667 0.00 0.00 0.00 3.02
4976 5709 5.243060 TGACGAAAGACATAGGACTCTTGAA 59.757 40.000 0.00 0.00 0.00 2.69
4977 5710 4.765339 TGACGAAAGACATAGGACTCTTGA 59.235 41.667 0.00 0.00 0.00 3.02
4978 5711 5.060662 TGACGAAAGACATAGGACTCTTG 57.939 43.478 0.00 0.00 0.00 3.02
4979 5712 5.419155 TGATGACGAAAGACATAGGACTCTT 59.581 40.000 0.00 0.00 45.96 2.85
4980 5713 4.950475 TGATGACGAAAGACATAGGACTCT 59.050 41.667 0.00 0.00 45.96 3.24
4981 5714 5.038033 GTGATGACGAAAGACATAGGACTC 58.962 45.833 0.00 0.00 45.96 3.36
4982 5715 4.142138 GGTGATGACGAAAGACATAGGACT 60.142 45.833 0.00 0.00 45.96 3.85
4983 5716 4.113354 GGTGATGACGAAAGACATAGGAC 58.887 47.826 0.00 0.00 45.96 3.85
4984 5717 4.023980 AGGTGATGACGAAAGACATAGGA 58.976 43.478 0.00 0.00 45.96 2.94
4985 5718 4.392921 AGGTGATGACGAAAGACATAGG 57.607 45.455 0.00 0.00 45.96 2.57
4986 5719 5.974158 CACTAGGTGATGACGAAAGACATAG 59.026 44.000 0.00 0.00 45.96 2.23
4987 5720 5.650703 TCACTAGGTGATGACGAAAGACATA 59.349 40.000 0.00 0.00 45.96 2.29
4989 5722 3.824443 TCACTAGGTGATGACGAAAGACA 59.176 43.478 0.00 0.00 37.67 3.41
4990 5723 4.436242 TCACTAGGTGATGACGAAAGAC 57.564 45.455 0.00 0.00 37.67 3.01
5001 5734 7.658167 TCACAAAATACGAAAATCACTAGGTGA 59.342 33.333 2.80 2.80 46.90 4.02
5002 5735 7.802738 TCACAAAATACGAAAATCACTAGGTG 58.197 34.615 0.00 0.00 34.45 4.00
5003 5736 7.876068 TCTCACAAAATACGAAAATCACTAGGT 59.124 33.333 0.00 0.00 0.00 3.08
5004 5737 8.251750 TCTCACAAAATACGAAAATCACTAGG 57.748 34.615 0.00 0.00 0.00 3.02
5039 5772 1.852861 GCGTCGCTAGAAGAACGAGAG 60.853 57.143 10.68 1.14 36.34 3.20
5040 5773 0.096628 GCGTCGCTAGAAGAACGAGA 59.903 55.000 10.68 0.00 36.34 4.04
5041 5774 0.862283 GGCGTCGCTAGAAGAACGAG 60.862 60.000 18.11 0.00 36.34 4.18
5042 5775 1.136147 GGCGTCGCTAGAAGAACGA 59.864 57.895 18.11 0.00 0.00 3.85
5043 5776 1.134530 CTGGCGTCGCTAGAAGAACG 61.135 60.000 24.67 0.00 39.54 3.95
5044 5777 0.802607 CCTGGCGTCGCTAGAAGAAC 60.803 60.000 29.61 5.55 39.54 3.01
5045 5778 0.963856 TCCTGGCGTCGCTAGAAGAA 60.964 55.000 29.61 10.79 39.54 2.52
5046 5779 0.963856 TTCCTGGCGTCGCTAGAAGA 60.964 55.000 29.61 17.21 39.54 2.87
5047 5780 0.108804 TTTCCTGGCGTCGCTAGAAG 60.109 55.000 29.61 15.22 39.54 2.85
5048 5781 0.535335 ATTTCCTGGCGTCGCTAGAA 59.465 50.000 29.61 17.93 39.54 2.10
5049 5782 0.535335 AATTTCCTGGCGTCGCTAGA 59.465 50.000 29.61 15.05 39.54 2.43
5050 5783 2.128035 CTAATTTCCTGGCGTCGCTAG 58.872 52.381 22.39 22.39 36.89 3.42
5051 5784 1.752498 TCTAATTTCCTGGCGTCGCTA 59.248 47.619 18.11 10.63 0.00 4.26
5052 5785 0.535335 TCTAATTTCCTGGCGTCGCT 59.465 50.000 18.11 0.00 0.00 4.93
5053 5786 0.931005 CTCTAATTTCCTGGCGTCGC 59.069 55.000 9.22 9.22 0.00 5.19
5054 5787 2.159226 ACTCTCTAATTTCCTGGCGTCG 60.159 50.000 0.00 0.00 0.00 5.12
5055 5788 3.528597 ACTCTCTAATTTCCTGGCGTC 57.471 47.619 0.00 0.00 0.00 5.19
5056 5789 3.983044 AACTCTCTAATTTCCTGGCGT 57.017 42.857 0.00 0.00 0.00 5.68
5057 5790 4.938226 AGAAAACTCTCTAATTTCCTGGCG 59.062 41.667 0.00 0.00 34.39 5.69
5058 5791 5.707764 ACAGAAAACTCTCTAATTTCCTGGC 59.292 40.000 0.00 0.00 34.39 4.85
5059 5792 6.372937 GGACAGAAAACTCTCTAATTTCCTGG 59.627 42.308 0.00 0.00 34.39 4.45
5060 5793 7.164803 AGGACAGAAAACTCTCTAATTTCCTG 58.835 38.462 0.00 0.00 34.39 3.86
5061 5794 7.323052 AGGACAGAAAACTCTCTAATTTCCT 57.677 36.000 0.00 0.00 34.39 3.36
5062 5795 6.311690 CGAGGACAGAAAACTCTCTAATTTCC 59.688 42.308 0.00 0.00 34.39 3.13
5063 5796 6.869388 ACGAGGACAGAAAACTCTCTAATTTC 59.131 38.462 0.00 0.00 34.14 2.17
5064 5797 6.760291 ACGAGGACAGAAAACTCTCTAATTT 58.240 36.000 0.00 0.00 0.00 1.82
5065 5798 6.347859 ACGAGGACAGAAAACTCTCTAATT 57.652 37.500 0.00 0.00 0.00 1.40
5066 5799 5.986501 ACGAGGACAGAAAACTCTCTAAT 57.013 39.130 0.00 0.00 0.00 1.73
5067 5800 6.236409 TCTACGAGGACAGAAAACTCTCTAA 58.764 40.000 0.00 0.00 0.00 2.10
5068 5801 5.802465 TCTACGAGGACAGAAAACTCTCTA 58.198 41.667 0.00 0.00 0.00 2.43
5069 5802 4.653868 TCTACGAGGACAGAAAACTCTCT 58.346 43.478 0.00 0.00 0.00 3.10
5070 5803 5.449451 GGATCTACGAGGACAGAAAACTCTC 60.449 48.000 0.00 0.00 0.00 3.20
5071 5804 4.399934 GGATCTACGAGGACAGAAAACTCT 59.600 45.833 0.00 0.00 0.00 3.24
5072 5805 4.674475 GGATCTACGAGGACAGAAAACTC 58.326 47.826 0.00 0.00 0.00 3.01
5073 5806 3.128938 CGGATCTACGAGGACAGAAAACT 59.871 47.826 0.00 0.00 35.47 2.66
5074 5807 3.128242 TCGGATCTACGAGGACAGAAAAC 59.872 47.826 0.00 0.00 38.06 2.43
5075 5808 3.349927 TCGGATCTACGAGGACAGAAAA 58.650 45.455 0.00 0.00 38.06 2.29
5076 5809 2.995283 TCGGATCTACGAGGACAGAAA 58.005 47.619 0.00 0.00 38.06 2.52
5077 5810 2.704464 TCGGATCTACGAGGACAGAA 57.296 50.000 0.00 0.00 38.06 3.02
5095 5828 9.490379 ACATAAACTCATTAGGTCCGAATAATC 57.510 33.333 0.00 0.00 33.43 1.75
5096 5829 9.847224 AACATAAACTCATTAGGTCCGAATAAT 57.153 29.630 0.00 0.00 37.52 1.28
5097 5830 9.104965 CAACATAAACTCATTAGGTCCGAATAA 57.895 33.333 0.00 0.00 37.52 1.40
5098 5831 7.713507 CCAACATAAACTCATTAGGTCCGAATA 59.286 37.037 0.00 0.00 37.52 1.75
5099 5832 6.542370 CCAACATAAACTCATTAGGTCCGAAT 59.458 38.462 0.00 0.00 37.52 3.34
5100 5833 5.878116 CCAACATAAACTCATTAGGTCCGAA 59.122 40.000 0.00 0.00 37.52 4.30
5101 5834 5.046159 ACCAACATAAACTCATTAGGTCCGA 60.046 40.000 0.00 0.00 37.52 4.55
5102 5835 5.064707 CACCAACATAAACTCATTAGGTCCG 59.935 44.000 0.00 0.00 37.52 4.79
5103 5836 5.944007 ACACCAACATAAACTCATTAGGTCC 59.056 40.000 0.00 0.00 37.52 4.46
5104 5837 6.653320 TGACACCAACATAAACTCATTAGGTC 59.347 38.462 0.00 0.00 37.52 3.85
5105 5838 6.539173 TGACACCAACATAAACTCATTAGGT 58.461 36.000 0.00 0.00 40.05 3.08
5106 5839 7.447374 TTGACACCAACATAAACTCATTAGG 57.553 36.000 0.00 0.00 0.00 2.69
5107 5840 9.743057 TTTTTGACACCAACATAAACTCATTAG 57.257 29.630 0.00 0.00 30.88 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.