Multiple sequence alignment - TraesCS4A01G230500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G230500 chr4A 100.000 3245 0 0 1 3245 539582987 539586231 0.000000e+00 5993.0
1 TraesCS4A01G230500 chr4D 93.459 2385 76 31 884 3245 57223397 57221070 0.000000e+00 3467.0
2 TraesCS4A01G230500 chr4D 80.237 253 45 4 340 590 390921377 390921128 5.530000e-43 185.0
3 TraesCS4A01G230500 chr4D 87.912 91 9 2 157 246 169119964 169119875 4.430000e-19 106.0
4 TraesCS4A01G230500 chr6B 93.727 2216 76 21 1039 3226 550365005 550367185 0.000000e+00 3264.0
5 TraesCS4A01G230500 chr6B 98.649 74 1 0 976 1049 550342150 550342223 7.310000e-27 132.0
6 TraesCS4A01G230500 chr6B 91.228 57 2 1 891 947 550342095 550342148 1.250000e-09 75.0
7 TraesCS4A01G230500 chr4B 96.275 1745 40 12 877 2606 85938877 85937143 0.000000e+00 2839.0
8 TraesCS4A01G230500 chr4B 85.903 227 23 4 620 842 85939889 85939668 1.950000e-57 233.0
9 TraesCS4A01G230500 chr4B 94.737 76 2 2 157 232 63692413 63692486 2.050000e-22 117.0
10 TraesCS4A01G230500 chr4B 93.421 76 3 2 157 232 624442068 624442141 9.520000e-21 111.0
11 TraesCS4A01G230500 chr4B 89.535 86 7 2 147 232 63659610 63659693 1.230000e-19 108.0
12 TraesCS4A01G230500 chr6A 98.734 158 2 0 1 158 549021827 549021670 6.850000e-72 281.0
13 TraesCS4A01G230500 chr6A 96.914 162 5 0 1 162 438355745 438355584 4.130000e-69 272.0
14 TraesCS4A01G230500 chr7D 98.101 158 3 0 1 158 463018078 463017921 3.190000e-70 276.0
15 TraesCS4A01G230500 chr7D 98.101 158 3 0 1 158 510834787 510834630 3.190000e-70 276.0
16 TraesCS4A01G230500 chr7A 98.101 158 3 0 1 158 488339874 488340031 3.190000e-70 276.0
17 TraesCS4A01G230500 chr7A 79.747 79 14 2 759 835 549118856 549118778 4.520000e-04 56.5
18 TraesCS4A01G230500 chr1D 98.101 158 3 0 1 158 489211355 489211512 3.190000e-70 276.0
19 TraesCS4A01G230500 chr1D 97.468 158 4 0 1 158 81701580 81701423 1.480000e-68 270.0
20 TraesCS4A01G230500 chr1D 80.844 308 49 8 281 584 47945301 47945000 1.950000e-57 233.0
21 TraesCS4A01G230500 chr1D 79.085 306 56 7 282 584 456819474 456819174 1.530000e-48 204.0
22 TraesCS4A01G230500 chr1D 95.833 72 2 1 157 228 234329060 234329130 7.360000e-22 115.0
23 TraesCS4A01G230500 chrUn 97.468 158 4 0 1 158 116209598 116209755 1.480000e-68 270.0
24 TraesCS4A01G230500 chr6D 97.468 158 4 0 1 158 69968021 69968178 1.480000e-68 270.0
25 TraesCS4A01G230500 chr6D 79.026 267 39 10 282 544 455911298 455911045 2.000000e-37 167.0
26 TraesCS4A01G230500 chr5B 81.107 307 42 12 285 583 672840463 672840165 7.000000e-57 231.0
27 TraesCS4A01G230500 chr5B 76.774 310 58 11 279 584 313383644 313383943 9.320000e-36 161.0
28 TraesCS4A01G230500 chr5B 75.497 302 62 9 289 584 572341344 572341049 1.570000e-28 137.0
29 TraesCS4A01G230500 chr5B 93.421 76 3 2 157 232 282503645 282503718 9.520000e-21 111.0
30 TraesCS4A01G230500 chr5D 79.448 326 53 9 279 592 441791650 441791973 5.450000e-53 219.0
31 TraesCS4A01G230500 chr5D 81.855 248 36 6 340 579 501114871 501114625 1.970000e-47 200.0
32 TraesCS4A01G230500 chr2B 81.496 254 38 5 283 528 147493674 147493926 1.970000e-47 200.0
33 TraesCS4A01G230500 chr2B 79.655 290 47 7 279 558 231655836 231655549 7.100000e-47 198.0
34 TraesCS4A01G230500 chr3D 95.833 72 2 1 157 228 227513080 227513150 7.360000e-22 115.0
35 TraesCS4A01G230500 chr3D 89.412 85 6 2 157 239 482205903 482205986 1.590000e-18 104.0
36 TraesCS4A01G230500 chr3A 88.043 92 8 3 157 248 443203654 443203566 4.430000e-19 106.0
37 TraesCS4A01G230500 chr1B 80.328 122 19 3 279 399 636300909 636301026 1.600000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G230500 chr4A 539582987 539586231 3244 False 5993 5993 100.000 1 3245 1 chr4A.!!$F1 3244
1 TraesCS4A01G230500 chr4D 57221070 57223397 2327 True 3467 3467 93.459 884 3245 1 chr4D.!!$R1 2361
2 TraesCS4A01G230500 chr6B 550365005 550367185 2180 False 3264 3264 93.727 1039 3226 1 chr6B.!!$F1 2187
3 TraesCS4A01G230500 chr4B 85937143 85939889 2746 True 1536 2839 91.089 620 2606 2 chr4B.!!$R1 1986

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
370 371 0.033228 TTGGTGCCCGCATTTTTCTG 59.967 50.0 0.0 0.0 0.0 3.02 F
413 414 0.038599 ATGTGCATTCAGTGGGAGCA 59.961 50.0 0.0 0.0 0.0 4.26 F
513 514 0.104304 GCTCATAGGGGTACGGTGTG 59.896 60.0 0.0 0.0 0.0 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1854 2615 0.764369 AGAACCTCCTGAGCCACACA 60.764 55.000 0.0 0.0 0.00 3.72 R
2058 2819 2.173356 TGATCCACCACCATTGATCTCC 59.827 50.000 0.0 0.0 35.69 3.71 R
2292 3061 2.516930 CCCCAGTTAGGCATGGCG 60.517 66.667 14.3 0.0 35.10 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.339335 GGGTGGCCCTCAGGATAT 57.661 61.111 0.00 0.00 41.34 1.63
22 23 3.494561 GGGTGGCCCTCAGGATATA 57.505 57.895 0.00 0.00 41.34 0.86
23 24 1.742308 GGGTGGCCCTCAGGATATAA 58.258 55.000 0.00 0.00 41.34 0.98
24 25 2.062636 GGGTGGCCCTCAGGATATAAA 58.937 52.381 0.00 0.00 41.34 1.40
25 26 2.040412 GGGTGGCCCTCAGGATATAAAG 59.960 54.545 0.00 0.00 41.34 1.85
26 27 2.040412 GGTGGCCCTCAGGATATAAAGG 59.960 54.545 0.00 0.00 33.47 3.11
27 28 2.711547 GTGGCCCTCAGGATATAAAGGT 59.288 50.000 0.00 0.00 33.47 3.50
28 29 3.138468 GTGGCCCTCAGGATATAAAGGTT 59.862 47.826 0.00 0.00 33.47 3.50
29 30 3.791545 TGGCCCTCAGGATATAAAGGTTT 59.208 43.478 0.00 0.00 33.47 3.27
30 31 4.141251 TGGCCCTCAGGATATAAAGGTTTC 60.141 45.833 0.00 0.00 33.47 2.78
31 32 4.104897 GGCCCTCAGGATATAAAGGTTTCT 59.895 45.833 0.00 0.00 33.47 2.52
32 33 5.066593 GCCCTCAGGATATAAAGGTTTCTG 58.933 45.833 0.00 0.00 33.47 3.02
33 34 5.163195 GCCCTCAGGATATAAAGGTTTCTGA 60.163 44.000 0.00 0.00 33.47 3.27
34 35 6.529220 CCCTCAGGATATAAAGGTTTCTGAG 58.471 44.000 0.00 0.00 43.51 3.35
35 36 6.100424 CCCTCAGGATATAAAGGTTTCTGAGT 59.900 42.308 13.92 0.00 42.81 3.41
36 37 7.213678 CCTCAGGATATAAAGGTTTCTGAGTC 58.786 42.308 13.92 0.00 42.81 3.36
37 38 7.147655 CCTCAGGATATAAAGGTTTCTGAGTCA 60.148 40.741 13.92 0.00 42.81 3.41
38 39 7.556844 TCAGGATATAAAGGTTTCTGAGTCAC 58.443 38.462 0.00 0.00 0.00 3.67
39 40 7.400339 TCAGGATATAAAGGTTTCTGAGTCACT 59.600 37.037 0.00 0.00 0.00 3.41
40 41 8.043710 CAGGATATAAAGGTTTCTGAGTCACTT 58.956 37.037 0.00 0.00 0.00 3.16
41 42 8.606830 AGGATATAAAGGTTTCTGAGTCACTTT 58.393 33.333 9.74 9.74 33.32 2.66
42 43 9.886132 GGATATAAAGGTTTCTGAGTCACTTTA 57.114 33.333 12.63 12.63 35.62 1.85
44 45 7.981102 ATAAAGGTTTCTGAGTCACTTTACC 57.019 36.000 12.54 7.58 34.45 2.85
45 46 5.367945 AAGGTTTCTGAGTCACTTTACCA 57.632 39.130 10.10 0.00 0.00 3.25
46 47 4.704965 AGGTTTCTGAGTCACTTTACCAC 58.295 43.478 10.10 0.00 0.00 4.16
47 48 3.813724 GGTTTCTGAGTCACTTTACCACC 59.186 47.826 0.00 0.00 0.00 4.61
48 49 4.444449 GGTTTCTGAGTCACTTTACCACCT 60.444 45.833 0.00 0.00 0.00 4.00
49 50 4.602340 TTCTGAGTCACTTTACCACCTC 57.398 45.455 0.00 0.00 0.00 3.85
50 51 3.845860 TCTGAGTCACTTTACCACCTCT 58.154 45.455 0.00 0.00 0.00 3.69
51 52 4.994282 TCTGAGTCACTTTACCACCTCTA 58.006 43.478 0.00 0.00 0.00 2.43
52 53 5.010933 TCTGAGTCACTTTACCACCTCTAG 58.989 45.833 0.00 0.00 0.00 2.43
53 54 4.737578 TGAGTCACTTTACCACCTCTAGT 58.262 43.478 0.00 0.00 0.00 2.57
54 55 5.145564 TGAGTCACTTTACCACCTCTAGTT 58.854 41.667 0.00 0.00 0.00 2.24
55 56 5.010719 TGAGTCACTTTACCACCTCTAGTTG 59.989 44.000 0.00 0.00 0.00 3.16
56 57 3.995048 GTCACTTTACCACCTCTAGTTGC 59.005 47.826 0.00 0.00 0.00 4.17
57 58 3.644265 TCACTTTACCACCTCTAGTTGCA 59.356 43.478 0.00 0.00 0.00 4.08
58 59 4.101898 TCACTTTACCACCTCTAGTTGCAA 59.898 41.667 0.00 0.00 0.00 4.08
59 60 4.213482 CACTTTACCACCTCTAGTTGCAAC 59.787 45.833 22.17 22.17 0.00 4.17
60 61 4.102681 ACTTTACCACCTCTAGTTGCAACT 59.897 41.667 32.97 32.97 42.91 3.16
61 62 2.841442 ACCACCTCTAGTTGCAACTC 57.159 50.000 34.29 7.21 40.37 3.01
62 63 2.330216 ACCACCTCTAGTTGCAACTCT 58.670 47.619 34.29 15.75 40.37 3.24
63 64 3.507411 ACCACCTCTAGTTGCAACTCTA 58.493 45.455 34.29 21.79 40.37 2.43
64 65 3.901844 ACCACCTCTAGTTGCAACTCTAA 59.098 43.478 34.29 17.24 40.37 2.10
65 66 4.246458 CCACCTCTAGTTGCAACTCTAAC 58.754 47.826 34.29 5.49 40.37 2.34
66 67 4.262463 CCACCTCTAGTTGCAACTCTAACA 60.262 45.833 34.29 16.49 40.37 2.41
67 68 5.297547 CACCTCTAGTTGCAACTCTAACAA 58.702 41.667 34.29 15.75 40.37 2.83
68 69 5.177696 CACCTCTAGTTGCAACTCTAACAAC 59.822 44.000 34.29 2.96 43.12 3.32
69 70 5.163343 ACCTCTAGTTGCAACTCTAACAACA 60.163 40.000 34.29 14.27 44.77 3.33
70 71 5.758296 CCTCTAGTTGCAACTCTAACAACAA 59.242 40.000 34.29 13.55 44.77 2.83
71 72 6.260050 CCTCTAGTTGCAACTCTAACAACAAA 59.740 38.462 34.29 12.81 44.77 2.83
72 73 7.246674 TCTAGTTGCAACTCTAACAACAAAG 57.753 36.000 34.29 21.13 44.77 2.77
73 74 5.897377 AGTTGCAACTCTAACAACAAAGT 57.103 34.783 26.36 0.00 44.77 2.66
74 75 5.880341 AGTTGCAACTCTAACAACAAAGTC 58.120 37.500 26.36 0.00 44.77 3.01
75 76 5.414454 AGTTGCAACTCTAACAACAAAGTCA 59.586 36.000 26.36 0.00 44.77 3.41
76 77 6.095440 AGTTGCAACTCTAACAACAAAGTCAT 59.905 34.615 26.36 0.00 44.77 3.06
77 78 6.449635 TGCAACTCTAACAACAAAGTCATT 57.550 33.333 0.00 0.00 0.00 2.57
78 79 7.561021 TGCAACTCTAACAACAAAGTCATTA 57.439 32.000 0.00 0.00 0.00 1.90
79 80 8.165239 TGCAACTCTAACAACAAAGTCATTAT 57.835 30.769 0.00 0.00 0.00 1.28
80 81 8.629158 TGCAACTCTAACAACAAAGTCATTATT 58.371 29.630 0.00 0.00 0.00 1.40
81 82 9.118236 GCAACTCTAACAACAAAGTCATTATTC 57.882 33.333 0.00 0.00 0.00 1.75
113 114 8.474006 TTCAATTCATTGAGCAAATCATTCTG 57.526 30.769 2.57 0.00 46.34 3.02
114 115 7.832769 TCAATTCATTGAGCAAATCATTCTGA 58.167 30.769 0.00 0.00 41.51 3.27
115 116 7.973944 TCAATTCATTGAGCAAATCATTCTGAG 59.026 33.333 0.00 0.00 41.51 3.35
116 117 5.244785 TCATTGAGCAAATCATTCTGAGC 57.755 39.130 0.00 0.00 37.89 4.26
117 118 4.948004 TCATTGAGCAAATCATTCTGAGCT 59.052 37.500 0.00 0.00 37.89 4.09
118 119 5.417894 TCATTGAGCAAATCATTCTGAGCTT 59.582 36.000 0.00 0.00 37.89 3.74
119 120 5.717078 TTGAGCAAATCATTCTGAGCTTT 57.283 34.783 0.00 0.00 37.89 3.51
120 121 6.822667 TTGAGCAAATCATTCTGAGCTTTA 57.177 33.333 0.00 0.00 37.89 1.85
121 122 6.822667 TGAGCAAATCATTCTGAGCTTTAA 57.177 33.333 0.00 0.00 31.12 1.52
122 123 6.849502 TGAGCAAATCATTCTGAGCTTTAAG 58.150 36.000 0.00 0.00 31.12 1.85
123 124 6.432162 TGAGCAAATCATTCTGAGCTTTAAGT 59.568 34.615 0.00 0.00 31.12 2.24
124 125 7.607607 TGAGCAAATCATTCTGAGCTTTAAGTA 59.392 33.333 0.00 0.00 31.12 2.24
125 126 7.756558 AGCAAATCATTCTGAGCTTTAAGTAC 58.243 34.615 0.00 0.00 0.00 2.73
126 127 7.609532 AGCAAATCATTCTGAGCTTTAAGTACT 59.390 33.333 0.00 0.00 0.00 2.73
127 128 8.239998 GCAAATCATTCTGAGCTTTAAGTACTT 58.760 33.333 13.68 13.68 0.00 2.24
128 129 9.552114 CAAATCATTCTGAGCTTTAAGTACTTG 57.448 33.333 18.56 2.68 0.00 3.16
129 130 8.854614 AATCATTCTGAGCTTTAAGTACTTGT 57.145 30.769 18.56 0.00 0.00 3.16
130 131 8.854614 ATCATTCTGAGCTTTAAGTACTTGTT 57.145 30.769 18.56 0.00 0.00 2.83
131 132 8.311650 TCATTCTGAGCTTTAAGTACTTGTTC 57.688 34.615 18.56 9.47 0.00 3.18
132 133 8.150945 TCATTCTGAGCTTTAAGTACTTGTTCT 58.849 33.333 18.56 9.37 0.00 3.01
133 134 9.424319 CATTCTGAGCTTTAAGTACTTGTTCTA 57.576 33.333 18.56 0.00 0.00 2.10
134 135 8.813643 TTCTGAGCTTTAAGTACTTGTTCTAC 57.186 34.615 18.56 6.55 0.00 2.59
135 136 8.179509 TCTGAGCTTTAAGTACTTGTTCTACT 57.820 34.615 18.56 7.74 0.00 2.57
136 137 8.639761 TCTGAGCTTTAAGTACTTGTTCTACTT 58.360 33.333 18.56 0.00 37.96 2.24
137 138 8.589335 TGAGCTTTAAGTACTTGTTCTACTTG 57.411 34.615 18.56 0.08 35.61 3.16
138 139 8.418662 TGAGCTTTAAGTACTTGTTCTACTTGA 58.581 33.333 18.56 0.00 35.61 3.02
139 140 8.819643 AGCTTTAAGTACTTGTTCTACTTGAG 57.180 34.615 18.56 2.75 35.61 3.02
140 141 8.422566 AGCTTTAAGTACTTGTTCTACTTGAGT 58.577 33.333 18.56 0.00 35.61 3.41
141 142 8.488764 GCTTTAAGTACTTGTTCTACTTGAGTG 58.511 37.037 18.56 0.00 35.61 3.51
142 143 8.882415 TTTAAGTACTTGTTCTACTTGAGTGG 57.118 34.615 18.56 0.00 35.61 4.00
143 144 6.481434 AAGTACTTGTTCTACTTGAGTGGT 57.519 37.500 7.48 0.00 33.92 4.16
144 145 7.592885 AAGTACTTGTTCTACTTGAGTGGTA 57.407 36.000 7.48 0.00 33.92 3.25
145 146 7.592885 AGTACTTGTTCTACTTGAGTGGTAA 57.407 36.000 0.00 0.00 0.00 2.85
146 147 7.432059 AGTACTTGTTCTACTTGAGTGGTAAC 58.568 38.462 0.00 0.00 0.00 2.50
147 148 5.608449 ACTTGTTCTACTTGAGTGGTAACC 58.392 41.667 0.00 0.00 0.00 2.85
148 149 5.129815 ACTTGTTCTACTTGAGTGGTAACCA 59.870 40.000 0.00 0.00 0.00 3.67
149 150 5.818678 TGTTCTACTTGAGTGGTAACCAT 57.181 39.130 0.00 0.00 35.28 3.55
150 151 6.921486 TGTTCTACTTGAGTGGTAACCATA 57.079 37.500 0.00 0.00 35.28 2.74
151 152 6.931838 TGTTCTACTTGAGTGGTAACCATAG 58.068 40.000 0.00 0.00 35.28 2.23
152 153 6.722590 TGTTCTACTTGAGTGGTAACCATAGA 59.277 38.462 0.00 0.00 35.28 1.98
153 154 7.233962 TGTTCTACTTGAGTGGTAACCATAGAA 59.766 37.037 0.00 0.00 35.28 2.10
154 155 7.406031 TCTACTTGAGTGGTAACCATAGAAG 57.594 40.000 0.00 0.00 35.28 2.85
155 156 4.833390 ACTTGAGTGGTAACCATAGAAGC 58.167 43.478 0.00 0.00 35.28 3.86
156 157 4.286032 ACTTGAGTGGTAACCATAGAAGCA 59.714 41.667 0.00 0.00 35.28 3.91
157 158 5.045578 ACTTGAGTGGTAACCATAGAAGCAT 60.046 40.000 0.00 0.00 35.28 3.79
158 159 6.156256 ACTTGAGTGGTAACCATAGAAGCATA 59.844 38.462 0.00 0.00 35.28 3.14
159 160 6.747414 TGAGTGGTAACCATAGAAGCATAT 57.253 37.500 0.00 0.00 35.28 1.78
160 161 7.849322 TGAGTGGTAACCATAGAAGCATATA 57.151 36.000 0.00 0.00 35.28 0.86
161 162 8.435931 TGAGTGGTAACCATAGAAGCATATAT 57.564 34.615 0.00 0.00 35.28 0.86
162 163 8.314021 TGAGTGGTAACCATAGAAGCATATATG 58.686 37.037 8.45 8.45 35.28 1.78
163 164 8.435931 AGTGGTAACCATAGAAGCATATATGA 57.564 34.615 17.10 0.00 35.28 2.15
164 165 8.535335 AGTGGTAACCATAGAAGCATATATGAG 58.465 37.037 17.10 0.00 35.28 2.90
165 166 8.314751 GTGGTAACCATAGAAGCATATATGAGT 58.685 37.037 17.10 2.60 35.28 3.41
166 167 8.314021 TGGTAACCATAGAAGCATATATGAGTG 58.686 37.037 17.10 5.04 32.21 3.51
167 168 8.314751 GGTAACCATAGAAGCATATATGAGTGT 58.685 37.037 17.10 4.19 32.21 3.55
168 169 9.712305 GTAACCATAGAAGCATATATGAGTGTT 57.288 33.333 17.10 9.13 32.21 3.32
170 171 9.632638 AACCATAGAAGCATATATGAGTGTTTT 57.367 29.630 17.10 2.25 32.21 2.43
220 221 9.710818 ACACTCTTATATTAGTTTACAGAGGGA 57.289 33.333 2.59 0.00 34.50 4.20
222 223 9.939424 ACTCTTATATTAGTTTACAGAGGGAGT 57.061 33.333 0.00 0.00 32.21 3.85
233 234 9.830186 AGTTTACAGAGGGAGTATCATATATGT 57.170 33.333 12.42 3.29 36.25 2.29
236 237 9.822727 TTACAGAGGGAGTATCATATATGTTGA 57.177 33.333 12.42 0.00 36.25 3.18
237 238 8.907829 ACAGAGGGAGTATCATATATGTTGAT 57.092 34.615 12.42 2.84 36.25 2.57
238 239 9.331466 ACAGAGGGAGTATCATATATGTTGATT 57.669 33.333 12.42 0.00 36.25 2.57
239 240 9.597170 CAGAGGGAGTATCATATATGTTGATTG 57.403 37.037 12.42 0.00 36.25 2.67
240 241 9.331466 AGAGGGAGTATCATATATGTTGATTGT 57.669 33.333 12.42 0.00 36.25 2.71
283 284 9.571810 TTGAAATCTAAACATGTTCATATGTGC 57.428 29.630 12.39 0.00 40.24 4.57
284 285 7.909641 TGAAATCTAAACATGTTCATATGTGCG 59.090 33.333 12.39 0.00 40.24 5.34
285 286 7.552458 AATCTAAACATGTTCATATGTGCGA 57.448 32.000 12.39 0.00 40.24 5.10
286 287 6.976636 TCTAAACATGTTCATATGTGCGAA 57.023 33.333 12.39 0.00 40.24 4.70
287 288 6.771076 TCTAAACATGTTCATATGTGCGAAC 58.229 36.000 12.39 0.45 40.24 3.95
288 289 4.355543 AACATGTTCATATGTGCGAACC 57.644 40.909 4.92 0.00 40.24 3.62
289 290 3.342719 ACATGTTCATATGTGCGAACCA 58.657 40.909 1.90 0.00 40.65 3.67
290 291 3.755905 ACATGTTCATATGTGCGAACCAA 59.244 39.130 1.90 0.00 40.65 3.67
291 292 3.822594 TGTTCATATGTGCGAACCAAC 57.177 42.857 1.90 0.00 40.65 3.77
292 293 2.486203 TGTTCATATGTGCGAACCAACC 59.514 45.455 1.90 0.00 40.65 3.77
293 294 2.747446 GTTCATATGTGCGAACCAACCT 59.253 45.455 1.90 0.00 36.36 3.50
294 295 2.355197 TCATATGTGCGAACCAACCTG 58.645 47.619 1.90 0.00 0.00 4.00
295 296 2.083774 CATATGTGCGAACCAACCTGT 58.916 47.619 0.00 0.00 0.00 4.00
296 297 1.518325 TATGTGCGAACCAACCTGTG 58.482 50.000 0.00 0.00 0.00 3.66
304 305 4.007457 CCAACCTGTGGCTGGATG 57.993 61.111 0.00 0.00 41.72 3.51
305 306 1.679977 CCAACCTGTGGCTGGATGG 60.680 63.158 0.00 6.88 41.72 3.51
306 307 1.075482 CAACCTGTGGCTGGATGGT 59.925 57.895 0.00 0.00 0.00 3.55
307 308 0.540365 CAACCTGTGGCTGGATGGTT 60.540 55.000 0.00 0.00 41.12 3.67
308 309 1.072266 AACCTGTGGCTGGATGGTTA 58.928 50.000 0.00 0.00 38.99 2.85
309 310 1.072266 ACCTGTGGCTGGATGGTTAA 58.928 50.000 0.00 0.00 0.00 2.01
310 311 1.427368 ACCTGTGGCTGGATGGTTAAA 59.573 47.619 0.00 0.00 0.00 1.52
311 312 2.158385 ACCTGTGGCTGGATGGTTAAAA 60.158 45.455 0.00 0.00 0.00 1.52
312 313 2.493278 CCTGTGGCTGGATGGTTAAAAG 59.507 50.000 0.00 0.00 0.00 2.27
313 314 2.493278 CTGTGGCTGGATGGTTAAAAGG 59.507 50.000 0.00 0.00 0.00 3.11
314 315 2.109128 TGTGGCTGGATGGTTAAAAGGA 59.891 45.455 0.00 0.00 0.00 3.36
315 316 3.161866 GTGGCTGGATGGTTAAAAGGAA 58.838 45.455 0.00 0.00 0.00 3.36
316 317 3.576550 GTGGCTGGATGGTTAAAAGGAAA 59.423 43.478 0.00 0.00 0.00 3.13
317 318 3.831911 TGGCTGGATGGTTAAAAGGAAAG 59.168 43.478 0.00 0.00 0.00 2.62
318 319 3.832490 GGCTGGATGGTTAAAAGGAAAGT 59.168 43.478 0.00 0.00 0.00 2.66
319 320 4.321974 GGCTGGATGGTTAAAAGGAAAGTG 60.322 45.833 0.00 0.00 0.00 3.16
320 321 4.321974 GCTGGATGGTTAAAAGGAAAGTGG 60.322 45.833 0.00 0.00 0.00 4.00
321 322 4.810345 TGGATGGTTAAAAGGAAAGTGGT 58.190 39.130 0.00 0.00 0.00 4.16
322 323 5.954757 TGGATGGTTAAAAGGAAAGTGGTA 58.045 37.500 0.00 0.00 0.00 3.25
323 324 6.557568 TGGATGGTTAAAAGGAAAGTGGTAT 58.442 36.000 0.00 0.00 0.00 2.73
324 325 6.661805 TGGATGGTTAAAAGGAAAGTGGTATC 59.338 38.462 0.00 0.00 0.00 2.24
325 326 6.096423 GGATGGTTAAAAGGAAAGTGGTATCC 59.904 42.308 0.00 0.00 35.88 2.59
326 327 5.326900 TGGTTAAAAGGAAAGTGGTATCCC 58.673 41.667 0.00 0.00 36.31 3.85
327 328 4.708421 GGTTAAAAGGAAAGTGGTATCCCC 59.292 45.833 0.00 0.00 36.31 4.81
328 329 5.326900 GTTAAAAGGAAAGTGGTATCCCCA 58.673 41.667 0.00 0.00 42.51 4.96
335 336 3.844063 TGGTATCCCCAACCCACC 58.156 61.111 0.00 0.00 41.50 4.61
336 337 1.151565 TGGTATCCCCAACCCACCA 60.152 57.895 0.00 0.00 41.50 4.17
337 338 1.211567 TGGTATCCCCAACCCACCAG 61.212 60.000 0.00 0.00 41.50 4.00
338 339 1.613061 GTATCCCCAACCCACCAGG 59.387 63.158 0.00 0.00 43.78 4.45
339 340 2.313427 TATCCCCAACCCACCAGGC 61.313 63.158 0.00 0.00 40.58 4.85
340 341 2.798760 TATCCCCAACCCACCAGGCT 62.799 60.000 0.00 0.00 40.58 4.58
341 342 2.798760 ATCCCCAACCCACCAGGCTA 62.799 60.000 0.00 0.00 40.58 3.93
342 343 2.677228 CCCAACCCACCAGGCTAG 59.323 66.667 0.00 0.00 40.58 3.42
343 344 1.923395 CCCAACCCACCAGGCTAGA 60.923 63.158 0.00 0.00 40.58 2.43
344 345 1.299976 CCAACCCACCAGGCTAGAC 59.700 63.158 0.00 0.00 40.58 2.59
345 346 1.201429 CCAACCCACCAGGCTAGACT 61.201 60.000 0.00 0.00 40.58 3.24
346 347 0.693049 CAACCCACCAGGCTAGACTT 59.307 55.000 0.00 0.00 40.58 3.01
347 348 0.693049 AACCCACCAGGCTAGACTTG 59.307 55.000 0.00 0.00 40.58 3.16
348 349 0.178903 ACCCACCAGGCTAGACTTGA 60.179 55.000 3.13 0.00 40.58 3.02
349 350 0.250513 CCCACCAGGCTAGACTTGAC 59.749 60.000 3.13 0.00 0.00 3.18
350 351 0.976641 CCACCAGGCTAGACTTGACA 59.023 55.000 3.13 0.00 0.00 3.58
351 352 1.556911 CCACCAGGCTAGACTTGACAT 59.443 52.381 3.13 0.00 0.00 3.06
352 353 2.026822 CCACCAGGCTAGACTTGACATT 60.027 50.000 3.13 0.00 0.00 2.71
353 354 3.005554 CACCAGGCTAGACTTGACATTG 58.994 50.000 3.13 0.00 0.00 2.82
354 355 2.026822 ACCAGGCTAGACTTGACATTGG 60.027 50.000 3.13 0.00 0.00 3.16
355 356 2.026822 CCAGGCTAGACTTGACATTGGT 60.027 50.000 0.00 0.00 0.00 3.67
356 357 3.005554 CAGGCTAGACTTGACATTGGTG 58.994 50.000 0.00 0.00 0.00 4.17
357 358 1.740025 GGCTAGACTTGACATTGGTGC 59.260 52.381 0.00 0.00 0.00 5.01
358 359 1.740025 GCTAGACTTGACATTGGTGCC 59.260 52.381 0.00 0.00 0.00 5.01
359 360 2.359900 CTAGACTTGACATTGGTGCCC 58.640 52.381 0.00 0.00 0.00 5.36
360 361 0.606401 AGACTTGACATTGGTGCCCG 60.606 55.000 0.00 0.00 0.00 6.13
361 362 2.200170 GACTTGACATTGGTGCCCGC 62.200 60.000 0.00 0.00 0.00 6.13
362 363 2.203408 TTGACATTGGTGCCCGCA 60.203 55.556 0.00 0.00 0.00 5.69
363 364 1.597797 CTTGACATTGGTGCCCGCAT 61.598 55.000 0.00 0.00 0.00 4.73
364 365 1.184322 TTGACATTGGTGCCCGCATT 61.184 50.000 0.00 0.00 0.00 3.56
365 366 1.184322 TGACATTGGTGCCCGCATTT 61.184 50.000 0.00 0.00 0.00 2.32
366 367 0.037419 GACATTGGTGCCCGCATTTT 60.037 50.000 0.00 0.00 0.00 1.82
367 368 0.396060 ACATTGGTGCCCGCATTTTT 59.604 45.000 0.00 0.00 0.00 1.94
368 369 1.077915 CATTGGTGCCCGCATTTTTC 58.922 50.000 0.00 0.00 0.00 2.29
369 370 0.975887 ATTGGTGCCCGCATTTTTCT 59.024 45.000 0.00 0.00 0.00 2.52
370 371 0.033228 TTGGTGCCCGCATTTTTCTG 59.967 50.000 0.00 0.00 0.00 3.02
371 372 1.079888 GGTGCCCGCATTTTTCTGG 60.080 57.895 0.00 0.00 0.00 3.86
372 373 1.531739 GGTGCCCGCATTTTTCTGGA 61.532 55.000 0.00 0.00 0.00 3.86
373 374 0.532115 GTGCCCGCATTTTTCTGGAT 59.468 50.000 0.00 0.00 0.00 3.41
374 375 1.066929 GTGCCCGCATTTTTCTGGATT 60.067 47.619 0.00 0.00 0.00 3.01
375 376 1.622811 TGCCCGCATTTTTCTGGATTT 59.377 42.857 0.00 0.00 0.00 2.17
376 377 2.828520 TGCCCGCATTTTTCTGGATTTA 59.171 40.909 0.00 0.00 0.00 1.40
377 378 3.450457 TGCCCGCATTTTTCTGGATTTAT 59.550 39.130 0.00 0.00 0.00 1.40
378 379 4.081198 TGCCCGCATTTTTCTGGATTTATT 60.081 37.500 0.00 0.00 0.00 1.40
379 380 4.875536 GCCCGCATTTTTCTGGATTTATTT 59.124 37.500 0.00 0.00 0.00 1.40
380 381 5.353956 GCCCGCATTTTTCTGGATTTATTTT 59.646 36.000 0.00 0.00 0.00 1.82
381 382 6.536941 GCCCGCATTTTTCTGGATTTATTTTA 59.463 34.615 0.00 0.00 0.00 1.52
382 383 7.254421 GCCCGCATTTTTCTGGATTTATTTTAG 60.254 37.037 0.00 0.00 0.00 1.85
383 384 7.224557 CCCGCATTTTTCTGGATTTATTTTAGG 59.775 37.037 0.00 0.00 0.00 2.69
384 385 7.254421 CCGCATTTTTCTGGATTTATTTTAGGC 60.254 37.037 0.00 0.00 0.00 3.93
385 386 7.254421 CGCATTTTTCTGGATTTATTTTAGGCC 60.254 37.037 0.00 0.00 0.00 5.19
386 387 7.770433 GCATTTTTCTGGATTTATTTTAGGCCT 59.230 33.333 11.78 11.78 0.00 5.19
387 388 9.671279 CATTTTTCTGGATTTATTTTAGGCCTT 57.329 29.630 12.58 0.00 0.00 4.35
388 389 9.890629 ATTTTTCTGGATTTATTTTAGGCCTTC 57.109 29.630 12.58 0.00 0.00 3.46
389 390 7.418337 TTTCTGGATTTATTTTAGGCCTTCC 57.582 36.000 12.58 10.11 0.00 3.46
390 391 5.130350 TCTGGATTTATTTTAGGCCTTCCG 58.870 41.667 12.58 6.00 37.47 4.30
391 392 4.211920 TGGATTTATTTTAGGCCTTCCGG 58.788 43.478 12.58 0.00 37.47 5.14
409 410 1.430632 GCGATGTGCATTCAGTGGG 59.569 57.895 0.00 0.00 45.45 4.61
410 411 1.026182 GCGATGTGCATTCAGTGGGA 61.026 55.000 0.00 0.00 45.45 4.37
411 412 1.012086 CGATGTGCATTCAGTGGGAG 58.988 55.000 0.00 0.00 0.00 4.30
412 413 0.737219 GATGTGCATTCAGTGGGAGC 59.263 55.000 0.00 0.00 0.00 4.70
413 414 0.038599 ATGTGCATTCAGTGGGAGCA 59.961 50.000 0.00 0.00 0.00 4.26
414 415 0.607217 TGTGCATTCAGTGGGAGCAG 60.607 55.000 0.00 0.00 35.66 4.24
415 416 0.321919 GTGCATTCAGTGGGAGCAGA 60.322 55.000 0.00 0.00 35.66 4.26
416 417 0.622136 TGCATTCAGTGGGAGCAGAT 59.378 50.000 0.00 0.00 0.00 2.90
417 418 1.022735 GCATTCAGTGGGAGCAGATG 58.977 55.000 0.00 0.00 0.00 2.90
418 419 1.681166 GCATTCAGTGGGAGCAGATGT 60.681 52.381 0.00 0.00 0.00 3.06
419 420 2.719739 CATTCAGTGGGAGCAGATGTT 58.280 47.619 0.00 0.00 0.00 2.71
420 421 2.479566 TTCAGTGGGAGCAGATGTTC 57.520 50.000 0.00 0.00 0.00 3.18
421 422 1.649321 TCAGTGGGAGCAGATGTTCT 58.351 50.000 0.00 0.00 0.00 3.01
422 423 1.552337 TCAGTGGGAGCAGATGTTCTC 59.448 52.381 0.00 0.00 0.00 2.87
423 424 0.534412 AGTGGGAGCAGATGTTCTCG 59.466 55.000 0.00 0.00 0.00 4.04
424 425 0.247736 GTGGGAGCAGATGTTCTCGT 59.752 55.000 0.00 0.00 0.00 4.18
425 426 0.532573 TGGGAGCAGATGTTCTCGTC 59.467 55.000 0.00 0.00 0.00 4.20
426 427 0.526524 GGGAGCAGATGTTCTCGTCG 60.527 60.000 0.00 0.00 35.01 5.12
427 428 0.452184 GGAGCAGATGTTCTCGTCGA 59.548 55.000 0.00 0.00 35.01 4.20
428 429 1.540407 GAGCAGATGTTCTCGTCGAC 58.460 55.000 5.18 5.18 35.01 4.20
429 430 0.881796 AGCAGATGTTCTCGTCGACA 59.118 50.000 17.16 1.87 35.01 4.35
430 431 1.269723 AGCAGATGTTCTCGTCGACAA 59.730 47.619 17.16 0.00 35.01 3.18
431 432 1.387084 GCAGATGTTCTCGTCGACAAC 59.613 52.381 17.16 12.87 35.01 3.32
442 443 3.562639 TCGACAACGAAGGTGTCTG 57.437 52.632 15.08 9.38 45.74 3.51
443 444 0.742505 TCGACAACGAAGGTGTCTGT 59.257 50.000 15.08 0.00 45.74 3.41
444 445 0.852777 CGACAACGAAGGTGTCTGTG 59.147 55.000 15.08 0.00 42.66 3.66
445 446 1.535226 CGACAACGAAGGTGTCTGTGA 60.535 52.381 15.08 0.00 42.66 3.58
446 447 2.755650 GACAACGAAGGTGTCTGTGAT 58.244 47.619 10.63 0.00 0.00 3.06
447 448 2.476619 GACAACGAAGGTGTCTGTGATG 59.523 50.000 10.63 0.00 0.00 3.07
448 449 2.102420 ACAACGAAGGTGTCTGTGATGA 59.898 45.455 0.00 0.00 0.00 2.92
449 450 2.440539 ACGAAGGTGTCTGTGATGAC 57.559 50.000 0.00 0.00 37.47 3.06
450 451 1.964223 ACGAAGGTGTCTGTGATGACT 59.036 47.619 0.00 0.00 37.79 3.41
451 452 2.365617 ACGAAGGTGTCTGTGATGACTT 59.634 45.455 0.00 0.00 37.79 3.01
452 453 2.989840 CGAAGGTGTCTGTGATGACTTC 59.010 50.000 0.00 0.00 37.79 3.01
453 454 2.732412 AGGTGTCTGTGATGACTTCG 57.268 50.000 0.00 0.00 37.79 3.79
454 455 1.964223 AGGTGTCTGTGATGACTTCGT 59.036 47.619 0.00 0.00 37.79 3.85
455 456 2.029828 AGGTGTCTGTGATGACTTCGTC 60.030 50.000 0.00 0.00 37.79 4.20
456 457 2.288213 GGTGTCTGTGATGACTTCGTCA 60.288 50.000 0.00 0.00 46.90 4.35
457 458 3.381045 GTGTCTGTGATGACTTCGTCAA 58.619 45.455 2.65 0.00 45.96 3.18
458 459 3.990469 GTGTCTGTGATGACTTCGTCAAT 59.010 43.478 2.65 0.00 45.96 2.57
459 460 4.090642 GTGTCTGTGATGACTTCGTCAATC 59.909 45.833 2.65 1.32 45.96 2.67
460 461 4.021981 TGTCTGTGATGACTTCGTCAATCT 60.022 41.667 2.65 0.00 45.96 2.40
461 462 4.560819 GTCTGTGATGACTTCGTCAATCTC 59.439 45.833 2.65 0.00 45.96 2.75
462 463 4.218417 TCTGTGATGACTTCGTCAATCTCA 59.782 41.667 2.65 0.00 45.96 3.27
463 464 4.881920 TGTGATGACTTCGTCAATCTCAA 58.118 39.130 2.65 0.00 45.96 3.02
464 465 4.925646 TGTGATGACTTCGTCAATCTCAAG 59.074 41.667 2.65 0.00 45.96 3.02
465 466 5.164233 GTGATGACTTCGTCAATCTCAAGA 58.836 41.667 2.65 0.00 45.96 3.02
466 467 5.809562 GTGATGACTTCGTCAATCTCAAGAT 59.190 40.000 2.65 0.00 45.96 2.40
467 468 5.809051 TGATGACTTCGTCAATCTCAAGATG 59.191 40.000 0.36 0.00 45.96 2.90
468 469 5.391312 TGACTTCGTCAATCTCAAGATGA 57.609 39.130 0.00 0.00 39.78 2.92
469 470 5.970592 TGACTTCGTCAATCTCAAGATGAT 58.029 37.500 0.00 0.00 39.78 2.45
470 471 7.100458 TGACTTCGTCAATCTCAAGATGATA 57.900 36.000 0.00 0.00 39.78 2.15
471 472 7.720442 TGACTTCGTCAATCTCAAGATGATAT 58.280 34.615 0.00 0.00 39.78 1.63
472 473 7.650903 TGACTTCGTCAATCTCAAGATGATATG 59.349 37.037 0.00 0.00 39.78 1.78
473 474 7.495901 ACTTCGTCAATCTCAAGATGATATGT 58.504 34.615 0.00 0.00 34.49 2.29
474 475 7.651304 ACTTCGTCAATCTCAAGATGATATGTC 59.349 37.037 0.00 0.00 34.49 3.06
475 476 7.042797 TCGTCAATCTCAAGATGATATGTCA 57.957 36.000 0.00 0.00 39.04 3.58
476 477 7.144000 TCGTCAATCTCAAGATGATATGTCAG 58.856 38.462 0.00 0.00 37.87 3.51
477 478 6.128876 CGTCAATCTCAAGATGATATGTCAGC 60.129 42.308 0.00 0.00 41.02 4.26
488 489 5.681337 TGATATGTCAGCTTAGTCTCTCG 57.319 43.478 0.00 0.00 0.00 4.04
489 490 5.126779 TGATATGTCAGCTTAGTCTCTCGT 58.873 41.667 0.00 0.00 0.00 4.18
490 491 6.289064 TGATATGTCAGCTTAGTCTCTCGTA 58.711 40.000 0.00 0.00 0.00 3.43
491 492 4.886247 ATGTCAGCTTAGTCTCTCGTAC 57.114 45.455 0.00 0.00 0.00 3.67
492 493 3.671716 TGTCAGCTTAGTCTCTCGTACA 58.328 45.455 0.00 0.00 0.00 2.90
493 494 4.262617 TGTCAGCTTAGTCTCTCGTACAT 58.737 43.478 0.00 0.00 0.00 2.29
494 495 4.095036 TGTCAGCTTAGTCTCTCGTACATG 59.905 45.833 0.00 0.00 0.00 3.21
495 496 3.065510 TCAGCTTAGTCTCTCGTACATGC 59.934 47.826 0.00 0.00 0.00 4.06
496 497 3.066064 CAGCTTAGTCTCTCGTACATGCT 59.934 47.826 0.00 0.00 0.00 3.79
497 498 3.314080 AGCTTAGTCTCTCGTACATGCTC 59.686 47.826 0.00 0.00 0.00 4.26
498 499 3.065510 GCTTAGTCTCTCGTACATGCTCA 59.934 47.826 0.00 0.00 0.00 4.26
499 500 4.261405 GCTTAGTCTCTCGTACATGCTCAT 60.261 45.833 0.00 0.00 0.00 2.90
500 501 5.049336 GCTTAGTCTCTCGTACATGCTCATA 60.049 44.000 0.00 0.00 0.00 2.15
501 502 6.546972 TTAGTCTCTCGTACATGCTCATAG 57.453 41.667 0.00 0.00 0.00 2.23
502 503 3.818210 AGTCTCTCGTACATGCTCATAGG 59.182 47.826 0.00 0.00 0.00 2.57
503 504 3.057876 GTCTCTCGTACATGCTCATAGGG 60.058 52.174 0.00 0.00 0.00 3.53
504 505 2.230025 CTCTCGTACATGCTCATAGGGG 59.770 54.545 0.00 0.00 0.00 4.79
505 506 1.964223 CTCGTACATGCTCATAGGGGT 59.036 52.381 0.00 0.00 0.00 4.95
506 507 3.154710 CTCGTACATGCTCATAGGGGTA 58.845 50.000 0.00 0.00 0.00 3.69
507 508 2.889045 TCGTACATGCTCATAGGGGTAC 59.111 50.000 0.00 0.00 0.00 3.34
508 509 2.351447 CGTACATGCTCATAGGGGTACG 60.351 54.545 12.74 12.74 44.99 3.67
509 510 1.048601 ACATGCTCATAGGGGTACGG 58.951 55.000 0.00 0.00 0.00 4.02
510 511 1.048601 CATGCTCATAGGGGTACGGT 58.951 55.000 0.00 0.00 0.00 4.83
511 512 1.048601 ATGCTCATAGGGGTACGGTG 58.951 55.000 0.00 0.00 0.00 4.94
512 513 0.324923 TGCTCATAGGGGTACGGTGT 60.325 55.000 0.00 0.00 0.00 4.16
513 514 0.104304 GCTCATAGGGGTACGGTGTG 59.896 60.000 0.00 0.00 0.00 3.82
514 515 0.104304 CTCATAGGGGTACGGTGTGC 59.896 60.000 0.00 0.00 0.00 4.57
515 516 1.227147 CATAGGGGTACGGTGTGCG 60.227 63.158 0.00 0.00 0.00 5.34
516 517 1.683365 ATAGGGGTACGGTGTGCGT 60.683 57.895 0.00 0.00 0.00 5.24
517 518 1.952102 ATAGGGGTACGGTGTGCGTG 61.952 60.000 0.00 0.00 0.00 5.34
521 522 4.054455 GTACGGTGTGCGTGCGTG 62.054 66.667 0.00 0.00 0.00 5.34
522 523 4.572305 TACGGTGTGCGTGCGTGT 62.572 61.111 0.00 0.00 0.00 4.49
525 526 3.871574 GGTGTGCGTGCGTGTGTT 61.872 61.111 0.00 0.00 0.00 3.32
526 527 2.350760 GTGTGCGTGCGTGTGTTC 60.351 61.111 0.00 0.00 0.00 3.18
527 528 2.815647 TGTGCGTGCGTGTGTTCA 60.816 55.556 0.00 0.00 0.00 3.18
528 529 2.350760 GTGCGTGCGTGTGTTCAC 60.351 61.111 0.00 0.00 40.79 3.18
529 530 2.815647 TGCGTGCGTGTGTTCACA 60.816 55.556 1.23 1.23 44.02 3.58
530 531 2.053116 GCGTGCGTGTGTTCACAG 60.053 61.111 5.85 2.69 44.02 3.66
531 532 2.625906 CGTGCGTGTGTTCACAGG 59.374 61.111 17.59 17.59 44.02 4.00
532 533 1.880796 CGTGCGTGTGTTCACAGGA 60.881 57.895 23.58 9.97 44.02 3.86
533 534 1.821241 CGTGCGTGTGTTCACAGGAG 61.821 60.000 23.58 12.14 44.02 3.69
534 535 0.810031 GTGCGTGTGTTCACAGGAGT 60.810 55.000 23.58 0.00 44.02 3.85
550 551 6.360370 ACAGGAGTGAGTGTATGTTTATGT 57.640 37.500 0.00 0.00 0.00 2.29
551 552 7.476540 ACAGGAGTGAGTGTATGTTTATGTA 57.523 36.000 0.00 0.00 0.00 2.29
552 553 8.079211 ACAGGAGTGAGTGTATGTTTATGTAT 57.921 34.615 0.00 0.00 0.00 2.29
553 554 9.197306 ACAGGAGTGAGTGTATGTTTATGTATA 57.803 33.333 0.00 0.00 0.00 1.47
574 575 9.586435 TGTATATGAGTGACTTTGATTGTACTG 57.414 33.333 0.00 0.00 0.00 2.74
575 576 9.587772 GTATATGAGTGACTTTGATTGTACTGT 57.412 33.333 0.00 0.00 0.00 3.55
576 577 6.791887 ATGAGTGACTTTGATTGTACTGTG 57.208 37.500 0.00 0.00 0.00 3.66
577 578 5.670485 TGAGTGACTTTGATTGTACTGTGT 58.330 37.500 0.00 0.00 0.00 3.72
578 579 6.112734 TGAGTGACTTTGATTGTACTGTGTT 58.887 36.000 0.00 0.00 0.00 3.32
579 580 7.269316 TGAGTGACTTTGATTGTACTGTGTTA 58.731 34.615 0.00 0.00 0.00 2.41
580 581 7.766738 TGAGTGACTTTGATTGTACTGTGTTAA 59.233 33.333 0.00 0.00 0.00 2.01
581 582 8.500753 AGTGACTTTGATTGTACTGTGTTAAA 57.499 30.769 0.00 0.00 0.00 1.52
582 583 8.952278 AGTGACTTTGATTGTACTGTGTTAAAA 58.048 29.630 0.00 0.00 0.00 1.52
583 584 9.562583 GTGACTTTGATTGTACTGTGTTAAAAA 57.437 29.630 0.00 0.00 0.00 1.94
584 585 9.562583 TGACTTTGATTGTACTGTGTTAAAAAC 57.437 29.630 0.00 0.00 0.00 2.43
585 586 9.562583 GACTTTGATTGTACTGTGTTAAAAACA 57.437 29.630 0.00 0.00 39.52 2.83
588 589 7.922505 TGATTGTACTGTGTTAAAAACATGC 57.077 32.000 0.00 0.00 44.35 4.06
589 590 6.920758 TGATTGTACTGTGTTAAAAACATGCC 59.079 34.615 0.00 0.00 44.35 4.40
590 591 6.458232 TTGTACTGTGTTAAAAACATGCCT 57.542 33.333 0.00 0.00 44.35 4.75
591 592 7.569639 TTGTACTGTGTTAAAAACATGCCTA 57.430 32.000 0.00 0.00 44.35 3.93
592 593 7.753309 TGTACTGTGTTAAAAACATGCCTAT 57.247 32.000 0.00 0.00 44.35 2.57
593 594 8.850007 TGTACTGTGTTAAAAACATGCCTATA 57.150 30.769 0.00 0.00 44.35 1.31
594 595 9.456147 TGTACTGTGTTAAAAACATGCCTATAT 57.544 29.630 0.00 0.00 44.35 0.86
607 608 7.677454 ACATGCCTATATATGACATGTGTTG 57.323 36.000 20.39 5.47 46.99 3.33
608 609 7.226441 ACATGCCTATATATGACATGTGTTGT 58.774 34.615 20.39 5.92 46.99 3.32
609 610 7.173735 ACATGCCTATATATGACATGTGTTGTG 59.826 37.037 20.39 4.49 46.99 3.33
610 611 6.825610 TGCCTATATATGACATGTGTTGTGA 58.174 36.000 1.15 0.00 39.18 3.58
611 612 7.452562 TGCCTATATATGACATGTGTTGTGAT 58.547 34.615 1.15 0.00 39.18 3.06
612 613 7.938490 TGCCTATATATGACATGTGTTGTGATT 59.062 33.333 1.15 0.00 39.18 2.57
613 614 8.786898 GCCTATATATGACATGTGTTGTGATTT 58.213 33.333 1.15 0.00 39.18 2.17
617 618 5.910637 ATGACATGTGTTGTGATTTTTGC 57.089 34.783 1.15 0.00 39.18 3.68
618 619 4.752146 TGACATGTGTTGTGATTTTTGCA 58.248 34.783 1.15 0.00 39.18 4.08
623 624 4.172505 TGTGTTGTGATTTTTGCACTCAC 58.827 39.130 9.72 9.72 39.56 3.51
636 637 1.605710 GCACTCACATATGGTCATGGC 59.394 52.381 7.80 0.00 0.00 4.40
693 697 7.848223 TTCATACACACTTGTATTCATCCTG 57.152 36.000 0.00 0.00 45.14 3.86
759 763 8.068892 AGAAACTACTCTCAATCCGAATTACT 57.931 34.615 0.00 0.00 0.00 2.24
763 767 7.612677 ACTACTCTCAATCCGAATTACTTGTT 58.387 34.615 0.00 0.00 0.00 2.83
765 769 7.745620 ACTCTCAATCCGAATTACTTGTTTT 57.254 32.000 0.00 0.00 0.00 2.43
766 770 8.842358 ACTCTCAATCCGAATTACTTGTTTTA 57.158 30.769 0.00 0.00 0.00 1.52
767 771 8.936864 ACTCTCAATCCGAATTACTTGTTTTAG 58.063 33.333 0.00 0.00 0.00 1.85
768 772 9.151471 CTCTCAATCCGAATTACTTGTTTTAGA 57.849 33.333 0.00 0.00 0.00 2.10
840 992 8.480133 ACCGGTATCTGATAATTTAAGAGAGT 57.520 34.615 4.49 0.00 0.00 3.24
956 1716 2.959707 AGACATCTCGGTGTATCTTCCC 59.040 50.000 0.00 0.00 31.16 3.97
980 1741 4.329545 GCTTCGAGCCCACACCCA 62.330 66.667 0.00 0.00 34.48 4.51
981 1742 2.429930 CTTCGAGCCCACACCCAA 59.570 61.111 0.00 0.00 0.00 4.12
982 1743 1.228124 CTTCGAGCCCACACCCAAA 60.228 57.895 0.00 0.00 0.00 3.28
1290 2051 4.316823 TCCACCTCCTGGTCCGCT 62.317 66.667 0.00 0.00 46.60 5.52
1686 2447 1.472376 CGGAGGTTCTTGGCTGATCTC 60.472 57.143 0.00 0.00 0.00 2.75
2218 2979 2.116238 TGGTAAGGGAGAGCCATGTAC 58.884 52.381 0.00 0.00 35.15 2.90
2258 3019 6.098838 GCTAAGGCTTAGTTTAGGGGTAACTA 59.901 42.308 29.49 0.00 36.56 2.24
2292 3061 5.415701 TGCCAACTCTTAGTTCAATTGGATC 59.584 40.000 5.42 0.00 36.03 3.36
2352 3121 4.448210 GAGGCATCGGTTGAAAGGTAATA 58.552 43.478 0.00 0.00 0.00 0.98
2377 3146 6.875948 TGGTTGATTCAATATGGTTATCCG 57.124 37.500 1.78 0.00 36.30 4.18
2498 3267 9.533253 CCATTGTCTGAAATGTTTTTCTTAGTT 57.467 29.630 9.87 0.00 41.54 2.24
2501 3270 8.909708 TGTCTGAAATGTTTTTCTTAGTTGTG 57.090 30.769 0.75 0.00 41.54 3.33
2502 3271 8.519526 TGTCTGAAATGTTTTTCTTAGTTGTGT 58.480 29.630 0.75 0.00 41.54 3.72
2510 3285 7.872881 TGTTTTTCTTAGTTGTGTGTGTGTTA 58.127 30.769 0.00 0.00 0.00 2.41
2531 3306 7.113404 GTGTTATCAATAATTTACATGCTGCCG 59.887 37.037 0.00 0.00 0.00 5.69
2535 3310 1.832883 AATTTACATGCTGCCGTGGA 58.167 45.000 0.00 0.00 32.11 4.02
2547 3322 2.545526 CTGCCGTGGATGTTGATGATAC 59.454 50.000 0.00 0.00 0.00 2.24
2614 3396 1.135859 GTGCTGTCAATAGTGCTGTGC 60.136 52.381 0.00 0.00 0.00 4.57
2625 3407 4.341827 GCTGTGCGCAAAACCATT 57.658 50.000 14.00 0.00 38.92 3.16
2626 3408 3.488048 GCTGTGCGCAAAACCATTA 57.512 47.368 14.00 0.00 38.92 1.90
2633 3415 2.230992 TGCGCAAAACCATTAGCTGATT 59.769 40.909 8.16 0.00 0.00 2.57
2637 3419 5.220777 GCGCAAAACCATTAGCTGATTACTA 60.221 40.000 0.30 0.00 0.00 1.82
2638 3420 6.676943 GCGCAAAACCATTAGCTGATTACTAA 60.677 38.462 0.30 0.00 34.29 2.24
2639 3421 6.687105 CGCAAAACCATTAGCTGATTACTAAC 59.313 38.462 0.00 0.00 32.67 2.34
2641 3423 7.480810 CAAAACCATTAGCTGATTACTAACCC 58.519 38.462 0.00 0.00 32.67 4.11
2642 3424 6.576778 AACCATTAGCTGATTACTAACCCT 57.423 37.500 0.00 0.00 32.67 4.34
2643 3425 5.930135 ACCATTAGCTGATTACTAACCCTG 58.070 41.667 0.00 0.00 32.67 4.45
2644 3426 5.428783 ACCATTAGCTGATTACTAACCCTGT 59.571 40.000 0.00 0.00 32.67 4.00
2645 3427 6.614087 ACCATTAGCTGATTACTAACCCTGTA 59.386 38.462 0.00 0.00 32.67 2.74
2674 3459 4.182693 TCAAGAATTTTGAGCAGCCATG 57.817 40.909 0.00 0.00 0.00 3.66
2680 3465 5.244626 AGAATTTTGAGCAGCCATGTTTACT 59.755 36.000 0.00 0.00 0.00 2.24
2711 3496 2.882229 GCCTAAATTGTGGTGTGGCCTA 60.882 50.000 3.32 0.00 38.35 3.93
2718 3503 0.905357 GTGGTGTGGCCTATCTCACT 59.095 55.000 3.32 0.00 38.35 3.41
2721 3506 1.134670 GGTGTGGCCTATCTCACTCAC 60.135 57.143 3.32 0.00 35.15 3.51
2737 3522 5.305585 TCACTCACCTTACTGTTCCAAATC 58.694 41.667 0.00 0.00 0.00 2.17
2774 3561 5.798132 TGATTCTTGTCATGTAGCTCAAGT 58.202 37.500 9.61 0.00 38.53 3.16
2781 3568 6.968131 TGTCATGTAGCTCAAGTATTCAAC 57.032 37.500 0.00 0.00 0.00 3.18
2795 3582 8.739039 TCAAGTATTCAACGATTCATCCATTTT 58.261 29.630 0.00 0.00 0.00 1.82
2796 3583 8.800972 CAAGTATTCAACGATTCATCCATTTTG 58.199 33.333 0.00 0.00 0.00 2.44
2799 3586 9.139174 GTATTCAACGATTCATCCATTTTGTTT 57.861 29.630 0.00 0.00 0.00 2.83
2800 3587 8.606040 ATTCAACGATTCATCCATTTTGTTTT 57.394 26.923 0.00 0.00 0.00 2.43
2801 3588 9.703892 ATTCAACGATTCATCCATTTTGTTTTA 57.296 25.926 0.00 0.00 0.00 1.52
2802 3589 9.703892 TTCAACGATTCATCCATTTTGTTTTAT 57.296 25.926 0.00 0.00 0.00 1.40
2822 3609 7.889873 TTTATCTTTTTCCAACACCAGAAGA 57.110 32.000 0.00 0.00 0.00 2.87
2910 3697 2.019249 TGTCATATTGCCAGCAAGAGC 58.981 47.619 11.21 2.34 39.47 4.09
2925 3712 1.002868 GAGCAAGAGGCCAGCTGAA 60.003 57.895 17.39 0.00 46.50 3.02
2926 3713 1.002379 AGCAAGAGGCCAGCTGAAG 60.002 57.895 17.39 0.00 46.50 3.02
2948 3735 2.370189 AGGGGAGAACTCAAGTTGTCAG 59.630 50.000 18.35 0.00 46.41 3.51
2949 3736 2.368875 GGGGAGAACTCAAGTTGTCAGA 59.631 50.000 18.35 0.00 46.41 3.27
2950 3737 3.394719 GGGAGAACTCAAGTTGTCAGAC 58.605 50.000 18.35 7.34 46.41 3.51
2951 3738 3.181465 GGGAGAACTCAAGTTGTCAGACA 60.181 47.826 18.35 0.00 46.41 3.41
2952 3739 4.442706 GGAGAACTCAAGTTGTCAGACAA 58.557 43.478 12.24 12.24 46.41 3.18
2953 3740 4.509600 GGAGAACTCAAGTTGTCAGACAAG 59.490 45.833 16.68 6.93 46.41 3.16
2954 3741 5.091261 AGAACTCAAGTTGTCAGACAAGT 57.909 39.130 16.68 16.71 43.10 3.16
2955 3742 6.222038 AGAACTCAAGTTGTCAGACAAGTA 57.778 37.500 21.67 8.43 40.60 2.24
2956 3743 6.821388 AGAACTCAAGTTGTCAGACAAGTAT 58.179 36.000 21.67 10.83 40.60 2.12
2957 3744 6.703607 AGAACTCAAGTTGTCAGACAAGTATG 59.296 38.462 21.67 19.58 40.60 2.39
2958 3745 6.161855 ACTCAAGTTGTCAGACAAGTATGA 57.838 37.500 21.67 21.82 40.60 2.15
2959 3746 6.219473 ACTCAAGTTGTCAGACAAGTATGAG 58.781 40.000 31.84 31.84 40.60 2.90
2960 3747 6.040955 ACTCAAGTTGTCAGACAAGTATGAGA 59.959 38.462 35.31 25.12 40.60 3.27
2961 3748 6.816136 TCAAGTTGTCAGACAAGTATGAGAA 58.184 36.000 21.67 3.66 40.60 2.87
3071 3859 7.275560 GGGATCACAAGTTTGCACATAAATAAC 59.724 37.037 0.00 0.00 0.00 1.89
3081 3869 9.893305 GTTTGCACATAAATAACTGTTACTTCT 57.107 29.630 1.73 0.00 0.00 2.85
3212 4002 9.677567 TTTTTAGTTTATTGTTCAGCATCACTC 57.322 29.630 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.742308 TTATATCCTGAGGGCCACCC 58.258 55.000 6.18 0.00 45.90 4.61
5 6 2.040412 CCTTTATATCCTGAGGGCCACC 59.960 54.545 6.18 0.00 0.00 4.61
6 7 2.711547 ACCTTTATATCCTGAGGGCCAC 59.288 50.000 6.18 0.00 33.51 5.01
7 8 3.074857 ACCTTTATATCCTGAGGGCCA 57.925 47.619 6.18 0.00 33.51 5.36
8 9 4.104897 AGAAACCTTTATATCCTGAGGGCC 59.895 45.833 0.00 0.00 33.51 5.80
9 10 5.066593 CAGAAACCTTTATATCCTGAGGGC 58.933 45.833 0.00 0.00 33.51 5.19
10 11 6.100424 ACTCAGAAACCTTTATATCCTGAGGG 59.900 42.308 17.33 0.00 46.06 4.30
11 12 7.130681 ACTCAGAAACCTTTATATCCTGAGG 57.869 40.000 17.33 0.00 46.06 3.86
12 13 7.708752 GTGACTCAGAAACCTTTATATCCTGAG 59.291 40.741 13.08 13.08 46.74 3.35
13 14 7.400339 AGTGACTCAGAAACCTTTATATCCTGA 59.600 37.037 0.00 0.00 0.00 3.86
14 15 7.560368 AGTGACTCAGAAACCTTTATATCCTG 58.440 38.462 0.00 0.00 0.00 3.86
15 16 7.741554 AGTGACTCAGAAACCTTTATATCCT 57.258 36.000 0.00 0.00 0.00 3.24
16 17 8.794335 AAAGTGACTCAGAAACCTTTATATCC 57.206 34.615 0.00 0.00 0.00 2.59
18 19 9.668497 GGTAAAGTGACTCAGAAACCTTTATAT 57.332 33.333 0.00 0.00 0.00 0.86
19 20 8.653191 TGGTAAAGTGACTCAGAAACCTTTATA 58.347 33.333 0.00 0.00 0.00 0.98
20 21 7.444487 GTGGTAAAGTGACTCAGAAACCTTTAT 59.556 37.037 0.00 0.00 0.00 1.40
21 22 6.764560 GTGGTAAAGTGACTCAGAAACCTTTA 59.235 38.462 0.00 0.00 0.00 1.85
22 23 5.589050 GTGGTAAAGTGACTCAGAAACCTTT 59.411 40.000 0.00 0.00 0.00 3.11
23 24 5.123936 GTGGTAAAGTGACTCAGAAACCTT 58.876 41.667 0.00 0.00 0.00 3.50
24 25 4.444449 GGTGGTAAAGTGACTCAGAAACCT 60.444 45.833 0.00 0.00 0.00 3.50
25 26 3.813724 GGTGGTAAAGTGACTCAGAAACC 59.186 47.826 0.00 0.00 0.00 3.27
26 27 4.704965 AGGTGGTAAAGTGACTCAGAAAC 58.295 43.478 0.00 0.00 0.00 2.78
27 28 4.654262 AGAGGTGGTAAAGTGACTCAGAAA 59.346 41.667 0.00 0.00 0.00 2.52
28 29 4.223953 AGAGGTGGTAAAGTGACTCAGAA 58.776 43.478 0.00 0.00 0.00 3.02
29 30 3.845860 AGAGGTGGTAAAGTGACTCAGA 58.154 45.455 0.00 0.00 0.00 3.27
30 31 4.767928 ACTAGAGGTGGTAAAGTGACTCAG 59.232 45.833 0.00 0.00 0.00 3.35
31 32 4.737578 ACTAGAGGTGGTAAAGTGACTCA 58.262 43.478 0.00 0.00 0.00 3.41
32 33 5.471257 CAACTAGAGGTGGTAAAGTGACTC 58.529 45.833 0.00 0.00 0.00 3.36
33 34 4.262506 GCAACTAGAGGTGGTAAAGTGACT 60.263 45.833 0.00 0.00 0.00 3.41
34 35 3.995048 GCAACTAGAGGTGGTAAAGTGAC 59.005 47.826 0.00 0.00 0.00 3.67
35 36 3.644265 TGCAACTAGAGGTGGTAAAGTGA 59.356 43.478 0.00 0.00 0.00 3.41
36 37 4.002906 TGCAACTAGAGGTGGTAAAGTG 57.997 45.455 0.00 0.00 0.00 3.16
37 38 4.102681 AGTTGCAACTAGAGGTGGTAAAGT 59.897 41.667 30.25 0.32 37.52 2.66
38 39 4.642429 AGTTGCAACTAGAGGTGGTAAAG 58.358 43.478 30.25 0.00 37.52 1.85
39 40 4.347000 AGAGTTGCAACTAGAGGTGGTAAA 59.653 41.667 31.20 0.00 39.88 2.01
40 41 3.901844 AGAGTTGCAACTAGAGGTGGTAA 59.098 43.478 31.20 0.00 39.88 2.85
41 42 3.507411 AGAGTTGCAACTAGAGGTGGTA 58.493 45.455 31.20 0.00 39.88 3.25
42 43 2.330216 AGAGTTGCAACTAGAGGTGGT 58.670 47.619 31.20 7.00 39.88 4.16
43 44 4.246458 GTTAGAGTTGCAACTAGAGGTGG 58.754 47.826 31.20 0.00 39.88 4.61
44 45 4.883083 TGTTAGAGTTGCAACTAGAGGTG 58.117 43.478 31.20 0.00 39.88 4.00
45 46 5.163343 TGTTGTTAGAGTTGCAACTAGAGGT 60.163 40.000 31.20 15.70 41.93 3.85
46 47 5.297547 TGTTGTTAGAGTTGCAACTAGAGG 58.702 41.667 31.20 0.00 41.93 3.69
47 48 6.844696 TTGTTGTTAGAGTTGCAACTAGAG 57.155 37.500 31.20 0.00 41.93 2.43
48 49 6.821665 ACTTTGTTGTTAGAGTTGCAACTAGA 59.178 34.615 31.20 19.10 41.93 2.43
49 50 7.016361 ACTTTGTTGTTAGAGTTGCAACTAG 57.984 36.000 31.20 21.46 41.93 2.57
50 51 6.596106 TGACTTTGTTGTTAGAGTTGCAACTA 59.404 34.615 31.20 15.02 41.93 2.24
51 52 5.414454 TGACTTTGTTGTTAGAGTTGCAACT 59.586 36.000 31.57 31.57 41.93 3.16
52 53 5.636837 TGACTTTGTTGTTAGAGTTGCAAC 58.363 37.500 22.17 22.17 41.81 4.17
53 54 5.888691 TGACTTTGTTGTTAGAGTTGCAA 57.111 34.783 0.00 0.00 0.00 4.08
54 55 6.449635 AATGACTTTGTTGTTAGAGTTGCA 57.550 33.333 0.00 0.00 0.00 4.08
55 56 9.118236 GAATAATGACTTTGTTGTTAGAGTTGC 57.882 33.333 0.00 0.00 0.00 4.17
87 88 9.098355 CAGAATGATTTGCTCAATGAATTGAAT 57.902 29.630 7.13 0.00 42.11 2.57
88 89 8.308207 TCAGAATGATTTGCTCAATGAATTGAA 58.692 29.630 7.13 0.00 42.56 2.69
89 90 7.832769 TCAGAATGATTTGCTCAATGAATTGA 58.167 30.769 5.65 5.65 42.56 2.57
107 108 8.316640 AGAACAAGTACTTAAAGCTCAGAATG 57.683 34.615 8.04 0.00 37.54 2.67
108 109 9.425577 GTAGAACAAGTACTTAAAGCTCAGAAT 57.574 33.333 8.04 0.00 0.00 2.40
109 110 8.639761 AGTAGAACAAGTACTTAAAGCTCAGAA 58.360 33.333 8.04 0.00 0.00 3.02
110 111 8.179509 AGTAGAACAAGTACTTAAAGCTCAGA 57.820 34.615 8.04 0.00 0.00 3.27
111 112 8.704234 CAAGTAGAACAAGTACTTAAAGCTCAG 58.296 37.037 8.04 0.00 38.42 3.35
112 113 8.418662 TCAAGTAGAACAAGTACTTAAAGCTCA 58.581 33.333 8.04 0.00 38.42 4.26
113 114 8.813643 TCAAGTAGAACAAGTACTTAAAGCTC 57.186 34.615 8.04 0.00 38.42 4.09
114 115 8.422566 ACTCAAGTAGAACAAGTACTTAAAGCT 58.577 33.333 8.04 6.29 38.42 3.74
115 116 8.488764 CACTCAAGTAGAACAAGTACTTAAAGC 58.511 37.037 8.04 0.00 38.42 3.51
116 117 8.979574 CCACTCAAGTAGAACAAGTACTTAAAG 58.020 37.037 8.04 0.00 38.42 1.85
117 118 8.480501 ACCACTCAAGTAGAACAAGTACTTAAA 58.519 33.333 8.04 0.00 38.42 1.52
118 119 8.015185 ACCACTCAAGTAGAACAAGTACTTAA 57.985 34.615 8.04 0.00 38.42 1.85
119 120 7.592885 ACCACTCAAGTAGAACAAGTACTTA 57.407 36.000 8.04 0.00 38.42 2.24
120 121 6.481434 ACCACTCAAGTAGAACAAGTACTT 57.519 37.500 1.12 1.12 40.62 2.24
121 122 7.432059 GTTACCACTCAAGTAGAACAAGTACT 58.568 38.462 0.00 0.00 31.80 2.73
122 123 6.644181 GGTTACCACTCAAGTAGAACAAGTAC 59.356 42.308 0.00 0.00 0.00 2.73
123 124 6.324512 TGGTTACCACTCAAGTAGAACAAGTA 59.675 38.462 0.00 0.00 0.00 2.24
124 125 5.129815 TGGTTACCACTCAAGTAGAACAAGT 59.870 40.000 0.00 0.00 0.00 3.16
125 126 5.607477 TGGTTACCACTCAAGTAGAACAAG 58.393 41.667 0.00 0.00 0.00 3.16
126 127 5.617528 TGGTTACCACTCAAGTAGAACAA 57.382 39.130 0.00 0.00 0.00 2.83
127 128 5.818678 ATGGTTACCACTCAAGTAGAACA 57.181 39.130 6.10 0.00 35.80 3.18
128 129 7.166691 TCTATGGTTACCACTCAAGTAGAAC 57.833 40.000 6.10 0.00 35.80 3.01
129 130 7.578955 GCTTCTATGGTTACCACTCAAGTAGAA 60.579 40.741 16.98 16.98 35.80 2.10
130 131 6.127423 GCTTCTATGGTTACCACTCAAGTAGA 60.127 42.308 6.10 6.14 35.80 2.59
131 132 6.043411 GCTTCTATGGTTACCACTCAAGTAG 58.957 44.000 6.10 3.59 35.80 2.57
132 133 5.482526 TGCTTCTATGGTTACCACTCAAGTA 59.517 40.000 6.10 5.54 35.80 2.24
133 134 4.286032 TGCTTCTATGGTTACCACTCAAGT 59.714 41.667 6.10 0.00 35.80 3.16
134 135 4.832248 TGCTTCTATGGTTACCACTCAAG 58.168 43.478 6.10 9.71 35.80 3.02
135 136 4.901197 TGCTTCTATGGTTACCACTCAA 57.099 40.909 6.10 0.00 35.80 3.02
136 137 6.747414 ATATGCTTCTATGGTTACCACTCA 57.253 37.500 6.10 0.00 35.80 3.41
137 138 8.531982 TCATATATGCTTCTATGGTTACCACTC 58.468 37.037 6.10 0.00 35.80 3.51
138 139 8.435931 TCATATATGCTTCTATGGTTACCACT 57.564 34.615 6.10 0.00 35.80 4.00
139 140 8.314751 ACTCATATATGCTTCTATGGTTACCAC 58.685 37.037 6.10 0.00 35.80 4.16
140 141 8.314021 CACTCATATATGCTTCTATGGTTACCA 58.686 37.037 6.53 6.53 38.19 3.25
141 142 8.314751 ACACTCATATATGCTTCTATGGTTACC 58.685 37.037 7.92 0.00 0.00 2.85
142 143 9.712305 AACACTCATATATGCTTCTATGGTTAC 57.288 33.333 7.92 0.00 0.00 2.50
144 145 9.632638 AAAACACTCATATATGCTTCTATGGTT 57.367 29.630 7.92 2.39 0.00 3.67
194 195 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
196 197 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
207 208 9.830186 ACATATATGATACTCCCTCTGTAAACT 57.170 33.333 19.63 0.00 0.00 2.66
210 211 9.822727 TCAACATATATGATACTCCCTCTGTAA 57.177 33.333 19.63 0.00 0.00 2.41
211 212 9.997172 ATCAACATATATGATACTCCCTCTGTA 57.003 33.333 19.63 0.00 35.80 2.74
212 213 8.907829 ATCAACATATATGATACTCCCTCTGT 57.092 34.615 19.63 0.00 35.80 3.41
213 214 9.597170 CAATCAACATATATGATACTCCCTCTG 57.403 37.037 19.63 0.46 36.53 3.35
214 215 9.331466 ACAATCAACATATATGATACTCCCTCT 57.669 33.333 19.63 0.00 36.53 3.69
257 258 9.571810 GCACATATGAACATGTTTAGATTTCAA 57.428 29.630 13.36 0.00 37.02 2.69
258 259 7.909641 CGCACATATGAACATGTTTAGATTTCA 59.090 33.333 13.36 4.49 37.02 2.69
259 260 8.122330 TCGCACATATGAACATGTTTAGATTTC 58.878 33.333 13.36 0.00 37.02 2.17
260 261 7.984391 TCGCACATATGAACATGTTTAGATTT 58.016 30.769 13.36 1.51 37.02 2.17
261 262 7.552458 TCGCACATATGAACATGTTTAGATT 57.448 32.000 13.36 0.00 37.02 2.40
262 263 7.409697 GTTCGCACATATGAACATGTTTAGAT 58.590 34.615 13.36 8.66 43.06 1.98
263 264 6.183360 GGTTCGCACATATGAACATGTTTAGA 60.183 38.462 13.36 6.32 44.85 2.10
264 265 5.965334 GGTTCGCACATATGAACATGTTTAG 59.035 40.000 13.36 0.00 44.85 1.85
265 266 5.412904 TGGTTCGCACATATGAACATGTTTA 59.587 36.000 13.36 9.29 44.85 2.01
266 267 4.217334 TGGTTCGCACATATGAACATGTTT 59.783 37.500 13.36 0.00 44.85 2.83
267 268 3.755905 TGGTTCGCACATATGAACATGTT 59.244 39.130 11.78 11.78 44.85 2.71
268 269 3.342719 TGGTTCGCACATATGAACATGT 58.657 40.909 10.38 0.00 44.85 3.21
269 270 4.097714 GTTGGTTCGCACATATGAACATG 58.902 43.478 10.38 0.00 44.85 3.21
270 271 3.128589 GGTTGGTTCGCACATATGAACAT 59.871 43.478 10.38 0.00 44.85 2.71
271 272 2.486203 GGTTGGTTCGCACATATGAACA 59.514 45.455 10.38 0.00 44.85 3.18
272 273 2.747446 AGGTTGGTTCGCACATATGAAC 59.253 45.455 10.38 3.07 42.87 3.18
273 274 2.746904 CAGGTTGGTTCGCACATATGAA 59.253 45.455 10.38 0.00 0.00 2.57
274 275 2.290008 ACAGGTTGGTTCGCACATATGA 60.290 45.455 10.38 0.00 0.00 2.15
275 276 2.083774 ACAGGTTGGTTCGCACATATG 58.916 47.619 0.00 0.00 0.00 1.78
276 277 2.083774 CACAGGTTGGTTCGCACATAT 58.916 47.619 0.00 0.00 0.00 1.78
277 278 1.518325 CACAGGTTGGTTCGCACATA 58.482 50.000 0.00 0.00 0.00 2.29
278 279 1.172180 CCACAGGTTGGTTCGCACAT 61.172 55.000 0.00 0.00 41.10 3.21
279 280 1.821759 CCACAGGTTGGTTCGCACA 60.822 57.895 0.00 0.00 41.10 4.57
280 281 3.030652 CCACAGGTTGGTTCGCAC 58.969 61.111 0.00 0.00 41.10 5.34
283 284 2.260869 CCAGCCACAGGTTGGTTCG 61.261 63.158 10.42 0.00 46.83 3.95
284 285 3.763671 CCAGCCACAGGTTGGTTC 58.236 61.111 10.42 0.00 46.83 3.62
288 289 0.540365 AACCATCCAGCCACAGGTTG 60.540 55.000 0.00 0.00 40.80 3.77
289 290 1.072266 TAACCATCCAGCCACAGGTT 58.928 50.000 0.00 0.00 44.23 3.50
290 291 1.072266 TTAACCATCCAGCCACAGGT 58.928 50.000 0.00 0.00 0.00 4.00
291 292 2.214376 TTTAACCATCCAGCCACAGG 57.786 50.000 0.00 0.00 0.00 4.00
292 293 2.493278 CCTTTTAACCATCCAGCCACAG 59.507 50.000 0.00 0.00 0.00 3.66
293 294 2.109128 TCCTTTTAACCATCCAGCCACA 59.891 45.455 0.00 0.00 0.00 4.17
294 295 2.802719 TCCTTTTAACCATCCAGCCAC 58.197 47.619 0.00 0.00 0.00 5.01
295 296 3.534357 TTCCTTTTAACCATCCAGCCA 57.466 42.857 0.00 0.00 0.00 4.75
296 297 3.832490 ACTTTCCTTTTAACCATCCAGCC 59.168 43.478 0.00 0.00 0.00 4.85
297 298 4.321974 CCACTTTCCTTTTAACCATCCAGC 60.322 45.833 0.00 0.00 0.00 4.85
298 299 4.832823 ACCACTTTCCTTTTAACCATCCAG 59.167 41.667 0.00 0.00 0.00 3.86
299 300 4.810345 ACCACTTTCCTTTTAACCATCCA 58.190 39.130 0.00 0.00 0.00 3.41
300 301 6.096423 GGATACCACTTTCCTTTTAACCATCC 59.904 42.308 0.00 0.00 0.00 3.51
301 302 7.096884 GGATACCACTTTCCTTTTAACCATC 57.903 40.000 0.00 0.00 0.00 3.51
320 321 1.613061 CCTGGTGGGTTGGGGATAC 59.387 63.158 0.00 0.00 0.00 2.24
321 322 2.313427 GCCTGGTGGGTTGGGGATA 61.313 63.158 0.00 0.00 37.43 2.59
322 323 2.798760 TAGCCTGGTGGGTTGGGGAT 62.799 60.000 0.00 0.00 42.12 3.85
323 324 3.508786 TAGCCTGGTGGGTTGGGGA 62.509 63.158 0.00 0.00 42.12 4.81
324 325 2.938798 TAGCCTGGTGGGTTGGGG 60.939 66.667 0.00 0.00 42.12 4.96
325 326 1.923395 TCTAGCCTGGTGGGTTGGG 60.923 63.158 0.00 0.00 42.12 4.12
326 327 1.201429 AGTCTAGCCTGGTGGGTTGG 61.201 60.000 0.00 0.00 42.12 3.77
327 328 0.693049 AAGTCTAGCCTGGTGGGTTG 59.307 55.000 0.00 0.00 42.12 3.77
328 329 0.693049 CAAGTCTAGCCTGGTGGGTT 59.307 55.000 0.00 0.00 42.12 4.11
330 331 0.250513 GTCAAGTCTAGCCTGGTGGG 59.749 60.000 0.00 0.00 38.36 4.61
331 332 0.976641 TGTCAAGTCTAGCCTGGTGG 59.023 55.000 0.00 0.00 0.00 4.61
332 333 3.005554 CAATGTCAAGTCTAGCCTGGTG 58.994 50.000 0.00 0.00 0.00 4.17
333 334 2.026822 CCAATGTCAAGTCTAGCCTGGT 60.027 50.000 0.00 0.00 0.00 4.00
334 335 2.026822 ACCAATGTCAAGTCTAGCCTGG 60.027 50.000 0.00 0.00 0.00 4.45
335 336 3.005554 CACCAATGTCAAGTCTAGCCTG 58.994 50.000 0.00 0.00 0.00 4.85
336 337 2.616510 GCACCAATGTCAAGTCTAGCCT 60.617 50.000 0.00 0.00 0.00 4.58
337 338 1.740025 GCACCAATGTCAAGTCTAGCC 59.260 52.381 0.00 0.00 0.00 3.93
338 339 1.740025 GGCACCAATGTCAAGTCTAGC 59.260 52.381 0.00 0.00 0.00 3.42
354 355 0.532115 ATCCAGAAAAATGCGGGCAC 59.468 50.000 0.00 0.00 0.00 5.01
355 356 1.265236 AATCCAGAAAAATGCGGGCA 58.735 45.000 0.00 0.00 0.00 5.36
356 357 2.385013 AAATCCAGAAAAATGCGGGC 57.615 45.000 0.00 0.00 0.00 6.13
357 358 6.983474 AAAATAAATCCAGAAAAATGCGGG 57.017 33.333 0.00 0.00 0.00 6.13
358 359 7.254421 GCCTAAAATAAATCCAGAAAAATGCGG 60.254 37.037 0.00 0.00 0.00 5.69
359 360 7.254421 GGCCTAAAATAAATCCAGAAAAATGCG 60.254 37.037 0.00 0.00 0.00 4.73
360 361 7.770433 AGGCCTAAAATAAATCCAGAAAAATGC 59.230 33.333 1.29 0.00 0.00 3.56
361 362 9.671279 AAGGCCTAAAATAAATCCAGAAAAATG 57.329 29.630 5.16 0.00 0.00 2.32
362 363 9.890629 GAAGGCCTAAAATAAATCCAGAAAAAT 57.109 29.630 5.16 0.00 0.00 1.82
363 364 8.318412 GGAAGGCCTAAAATAAATCCAGAAAAA 58.682 33.333 5.16 0.00 0.00 1.94
364 365 7.363443 CGGAAGGCCTAAAATAAATCCAGAAAA 60.363 37.037 5.16 0.00 0.00 2.29
365 366 6.096282 CGGAAGGCCTAAAATAAATCCAGAAA 59.904 38.462 5.16 0.00 0.00 2.52
366 367 5.592688 CGGAAGGCCTAAAATAAATCCAGAA 59.407 40.000 5.16 0.00 0.00 3.02
367 368 5.130350 CGGAAGGCCTAAAATAAATCCAGA 58.870 41.667 5.16 0.00 0.00 3.86
368 369 5.438761 CGGAAGGCCTAAAATAAATCCAG 57.561 43.478 5.16 0.00 0.00 3.86
385 386 1.353103 GAATGCACATCGCCGGAAG 59.647 57.895 5.05 0.00 41.33 3.46
386 387 1.368345 CTGAATGCACATCGCCGGAA 61.368 55.000 5.05 0.00 41.33 4.30
387 388 1.815003 CTGAATGCACATCGCCGGA 60.815 57.895 5.05 0.00 41.33 5.14
388 389 2.108514 ACTGAATGCACATCGCCGG 61.109 57.895 0.00 0.00 41.33 6.13
389 390 1.061411 CACTGAATGCACATCGCCG 59.939 57.895 0.00 0.00 41.33 6.46
390 391 1.430632 CCACTGAATGCACATCGCC 59.569 57.895 0.00 0.00 41.33 5.54
391 392 1.026182 TCCCACTGAATGCACATCGC 61.026 55.000 0.00 0.00 42.89 4.58
392 393 1.012086 CTCCCACTGAATGCACATCG 58.988 55.000 0.00 0.00 0.00 3.84
393 394 0.737219 GCTCCCACTGAATGCACATC 59.263 55.000 0.00 0.00 0.00 3.06
394 395 0.038599 TGCTCCCACTGAATGCACAT 59.961 50.000 0.00 0.00 0.00 3.21
395 396 0.607217 CTGCTCCCACTGAATGCACA 60.607 55.000 0.00 0.00 0.00 4.57
396 397 0.321919 TCTGCTCCCACTGAATGCAC 60.322 55.000 0.00 0.00 0.00 4.57
397 398 0.622136 ATCTGCTCCCACTGAATGCA 59.378 50.000 0.00 0.00 0.00 3.96
398 399 1.022735 CATCTGCTCCCACTGAATGC 58.977 55.000 0.00 0.00 0.00 3.56
399 400 2.414994 ACATCTGCTCCCACTGAATG 57.585 50.000 0.00 0.00 0.00 2.67
400 401 2.575279 AGAACATCTGCTCCCACTGAAT 59.425 45.455 0.00 0.00 0.00 2.57
401 402 1.980765 AGAACATCTGCTCCCACTGAA 59.019 47.619 0.00 0.00 0.00 3.02
402 403 1.552337 GAGAACATCTGCTCCCACTGA 59.448 52.381 0.00 0.00 0.00 3.41
403 404 1.738365 CGAGAACATCTGCTCCCACTG 60.738 57.143 0.00 0.00 0.00 3.66
404 405 0.534412 CGAGAACATCTGCTCCCACT 59.466 55.000 0.00 0.00 0.00 4.00
405 406 0.247736 ACGAGAACATCTGCTCCCAC 59.752 55.000 0.00 0.00 0.00 4.61
406 407 0.532573 GACGAGAACATCTGCTCCCA 59.467 55.000 0.00 0.00 0.00 4.37
407 408 0.526524 CGACGAGAACATCTGCTCCC 60.527 60.000 0.00 0.00 0.00 4.30
408 409 0.452184 TCGACGAGAACATCTGCTCC 59.548 55.000 0.00 0.00 0.00 4.70
409 410 1.135660 TGTCGACGAGAACATCTGCTC 60.136 52.381 11.62 0.00 0.00 4.26
410 411 0.881796 TGTCGACGAGAACATCTGCT 59.118 50.000 11.62 0.00 0.00 4.24
411 412 1.387084 GTTGTCGACGAGAACATCTGC 59.613 52.381 27.26 4.31 36.13 4.26
423 424 1.129326 CAGACACCTTCGTTGTCGAC 58.871 55.000 9.11 9.11 46.03 4.20
424 425 0.742505 ACAGACACCTTCGTTGTCGA 59.257 50.000 0.00 0.00 44.66 4.20
425 426 0.852777 CACAGACACCTTCGTTGTCG 59.147 55.000 0.00 0.00 37.61 4.35
426 427 2.218953 TCACAGACACCTTCGTTGTC 57.781 50.000 0.00 0.00 0.00 3.18
427 428 2.102420 TCATCACAGACACCTTCGTTGT 59.898 45.455 0.00 0.00 0.00 3.32
428 429 2.476619 GTCATCACAGACACCTTCGTTG 59.523 50.000 0.00 0.00 38.40 4.10
429 430 2.365617 AGTCATCACAGACACCTTCGTT 59.634 45.455 0.00 0.00 40.98 3.85
430 431 1.964223 AGTCATCACAGACACCTTCGT 59.036 47.619 0.00 0.00 40.98 3.85
431 432 2.732412 AGTCATCACAGACACCTTCG 57.268 50.000 0.00 0.00 40.98 3.79
432 433 2.989840 CGAAGTCATCACAGACACCTTC 59.010 50.000 0.00 0.00 40.98 3.46
433 434 2.365617 ACGAAGTCATCACAGACACCTT 59.634 45.455 0.00 0.00 29.74 3.50
434 435 1.964223 ACGAAGTCATCACAGACACCT 59.036 47.619 0.00 0.00 29.74 4.00
435 436 2.440539 ACGAAGTCATCACAGACACC 57.559 50.000 0.00 0.00 29.74 4.16
447 448 7.651304 ACATATCATCTTGAGATTGACGAAGTC 59.349 37.037 0.00 0.00 45.49 3.01
448 449 7.495901 ACATATCATCTTGAGATTGACGAAGT 58.504 34.615 0.00 0.00 36.31 3.01
449 450 7.650903 TGACATATCATCTTGAGATTGACGAAG 59.349 37.037 0.00 0.00 31.21 3.79
450 451 7.491682 TGACATATCATCTTGAGATTGACGAA 58.508 34.615 0.00 0.00 31.21 3.85
451 452 7.042797 TGACATATCATCTTGAGATTGACGA 57.957 36.000 0.00 0.00 31.21 4.20
452 453 6.128876 GCTGACATATCATCTTGAGATTGACG 60.129 42.308 0.00 0.00 33.22 4.35
453 454 6.930164 AGCTGACATATCATCTTGAGATTGAC 59.070 38.462 0.00 0.00 33.22 3.18
454 455 7.063934 AGCTGACATATCATCTTGAGATTGA 57.936 36.000 0.00 0.00 33.22 2.57
455 456 7.731882 AAGCTGACATATCATCTTGAGATTG 57.268 36.000 0.00 0.00 39.33 2.67
456 457 8.649591 ACTAAGCTGACATATCATCTTGAGATT 58.350 33.333 0.37 0.00 40.62 2.40
457 458 8.192743 ACTAAGCTGACATATCATCTTGAGAT 57.807 34.615 0.37 0.00 40.62 2.75
458 459 7.505248 AGACTAAGCTGACATATCATCTTGAGA 59.495 37.037 0.37 0.00 40.62 3.27
459 460 7.660112 AGACTAAGCTGACATATCATCTTGAG 58.340 38.462 0.37 0.00 40.62 3.02
460 461 7.505248 AGAGACTAAGCTGACATATCATCTTGA 59.495 37.037 0.37 0.00 40.62 3.02
461 462 7.660112 AGAGACTAAGCTGACATATCATCTTG 58.340 38.462 0.37 0.00 40.62 3.02
462 463 7.308529 CGAGAGACTAAGCTGACATATCATCTT 60.309 40.741 0.00 0.00 42.53 2.40
463 464 6.149308 CGAGAGACTAAGCTGACATATCATCT 59.851 42.308 0.00 0.00 32.57 2.90
464 465 6.072728 ACGAGAGACTAAGCTGACATATCATC 60.073 42.308 0.00 0.00 33.22 2.92
465 466 5.767665 ACGAGAGACTAAGCTGACATATCAT 59.232 40.000 0.00 0.00 33.22 2.45
466 467 5.126779 ACGAGAGACTAAGCTGACATATCA 58.873 41.667 0.00 0.00 0.00 2.15
467 468 5.682943 ACGAGAGACTAAGCTGACATATC 57.317 43.478 0.00 0.00 0.00 1.63
468 469 6.056236 TGTACGAGAGACTAAGCTGACATAT 58.944 40.000 0.00 0.00 0.00 1.78
469 470 5.425630 TGTACGAGAGACTAAGCTGACATA 58.574 41.667 0.00 0.00 0.00 2.29
470 471 4.262617 TGTACGAGAGACTAAGCTGACAT 58.737 43.478 0.00 0.00 0.00 3.06
471 472 3.671716 TGTACGAGAGACTAAGCTGACA 58.328 45.455 0.00 0.00 0.00 3.58
472 473 4.593157 CATGTACGAGAGACTAAGCTGAC 58.407 47.826 0.00 0.00 0.00 3.51
473 474 3.065510 GCATGTACGAGAGACTAAGCTGA 59.934 47.826 0.00 0.00 0.00 4.26
474 475 3.066064 AGCATGTACGAGAGACTAAGCTG 59.934 47.826 0.00 0.00 0.00 4.24
475 476 3.283751 AGCATGTACGAGAGACTAAGCT 58.716 45.455 0.00 0.00 0.00 3.74
476 477 3.065510 TGAGCATGTACGAGAGACTAAGC 59.934 47.826 0.00 0.00 0.00 3.09
477 478 4.884458 TGAGCATGTACGAGAGACTAAG 57.116 45.455 0.00 0.00 0.00 2.18
478 479 5.470437 CCTATGAGCATGTACGAGAGACTAA 59.530 44.000 0.00 0.00 0.00 2.24
479 480 4.998033 CCTATGAGCATGTACGAGAGACTA 59.002 45.833 0.00 0.00 0.00 2.59
480 481 3.818210 CCTATGAGCATGTACGAGAGACT 59.182 47.826 0.00 0.00 0.00 3.24
481 482 3.057876 CCCTATGAGCATGTACGAGAGAC 60.058 52.174 0.00 0.00 0.00 3.36
482 483 3.149981 CCCTATGAGCATGTACGAGAGA 58.850 50.000 0.00 0.00 0.00 3.10
483 484 2.230025 CCCCTATGAGCATGTACGAGAG 59.770 54.545 0.00 0.00 0.00 3.20
484 485 2.239400 CCCCTATGAGCATGTACGAGA 58.761 52.381 0.00 0.00 0.00 4.04
485 486 1.964223 ACCCCTATGAGCATGTACGAG 59.036 52.381 0.00 0.00 0.00 4.18
486 487 2.082140 ACCCCTATGAGCATGTACGA 57.918 50.000 0.00 0.00 0.00 3.43
487 488 2.351447 CGTACCCCTATGAGCATGTACG 60.351 54.545 13.22 13.22 43.39 3.67
488 489 2.029290 CCGTACCCCTATGAGCATGTAC 60.029 54.545 0.00 0.00 0.00 2.90
489 490 2.244695 CCGTACCCCTATGAGCATGTA 58.755 52.381 0.00 0.00 0.00 2.29
490 491 1.048601 CCGTACCCCTATGAGCATGT 58.951 55.000 0.00 0.00 0.00 3.21
491 492 1.048601 ACCGTACCCCTATGAGCATG 58.951 55.000 0.00 0.00 0.00 4.06
492 493 1.048601 CACCGTACCCCTATGAGCAT 58.951 55.000 0.00 0.00 0.00 3.79
493 494 0.324923 ACACCGTACCCCTATGAGCA 60.325 55.000 0.00 0.00 0.00 4.26
494 495 0.104304 CACACCGTACCCCTATGAGC 59.896 60.000 0.00 0.00 0.00 4.26
495 496 0.104304 GCACACCGTACCCCTATGAG 59.896 60.000 0.00 0.00 0.00 2.90
496 497 1.669049 CGCACACCGTACCCCTATGA 61.669 60.000 0.00 0.00 0.00 2.15
497 498 1.227147 CGCACACCGTACCCCTATG 60.227 63.158 0.00 0.00 0.00 2.23
498 499 3.213264 CGCACACCGTACCCCTAT 58.787 61.111 0.00 0.00 0.00 2.57
508 509 3.783588 GAACACACGCACGCACACC 62.784 63.158 0.00 0.00 0.00 4.16
509 510 2.350760 GAACACACGCACGCACAC 60.351 61.111 0.00 0.00 0.00 3.82
510 511 2.815647 TGAACACACGCACGCACA 60.816 55.556 0.00 0.00 0.00 4.57
511 512 2.350760 GTGAACACACGCACGCAC 60.351 61.111 0.00 0.00 0.00 5.34
512 513 2.807906 CTGTGAACACACGCACGCA 61.808 57.895 3.39 0.00 37.83 5.24
513 514 2.053116 CTGTGAACACACGCACGC 60.053 61.111 3.39 0.00 37.83 5.34
514 515 1.821241 CTCCTGTGAACACACGCACG 61.821 60.000 3.39 0.00 37.83 5.34
515 516 0.810031 ACTCCTGTGAACACACGCAC 60.810 55.000 3.39 0.00 36.21 5.34
516 517 0.809636 CACTCCTGTGAACACACGCA 60.810 55.000 3.39 0.00 46.55 5.24
517 518 1.934463 CACTCCTGTGAACACACGC 59.066 57.895 3.39 0.00 46.55 5.34
526 527 6.166279 ACATAAACATACACTCACTCCTGTG 58.834 40.000 0.00 0.00 45.07 3.66
527 528 6.360370 ACATAAACATACACTCACTCCTGT 57.640 37.500 0.00 0.00 0.00 4.00
548 549 9.586435 CAGTACAATCAAAGTCACTCATATACA 57.414 33.333 0.00 0.00 0.00 2.29
549 550 9.587772 ACAGTACAATCAAAGTCACTCATATAC 57.412 33.333 0.00 0.00 0.00 1.47
550 551 9.586435 CACAGTACAATCAAAGTCACTCATATA 57.414 33.333 0.00 0.00 0.00 0.86
551 552 8.097038 ACACAGTACAATCAAAGTCACTCATAT 58.903 33.333 0.00 0.00 0.00 1.78
552 553 7.441836 ACACAGTACAATCAAAGTCACTCATA 58.558 34.615 0.00 0.00 0.00 2.15
553 554 6.291377 ACACAGTACAATCAAAGTCACTCAT 58.709 36.000 0.00 0.00 0.00 2.90
554 555 5.670485 ACACAGTACAATCAAAGTCACTCA 58.330 37.500 0.00 0.00 0.00 3.41
555 556 6.604735 AACACAGTACAATCAAAGTCACTC 57.395 37.500 0.00 0.00 0.00 3.51
556 557 8.500753 TTTAACACAGTACAATCAAAGTCACT 57.499 30.769 0.00 0.00 0.00 3.41
557 558 9.562583 TTTTTAACACAGTACAATCAAAGTCAC 57.437 29.630 0.00 0.00 0.00 3.67
558 559 9.562583 GTTTTTAACACAGTACAATCAAAGTCA 57.437 29.630 0.00 0.00 0.00 3.41
559 560 9.562583 TGTTTTTAACACAGTACAATCAAAGTC 57.437 29.630 0.00 0.00 36.25 3.01
562 563 8.812329 GCATGTTTTTAACACAGTACAATCAAA 58.188 29.630 0.00 0.00 45.50 2.69
563 564 7.436673 GGCATGTTTTTAACACAGTACAATCAA 59.563 33.333 0.00 0.00 45.50 2.57
564 565 6.920758 GGCATGTTTTTAACACAGTACAATCA 59.079 34.615 0.00 0.00 45.50 2.57
565 566 7.145323 AGGCATGTTTTTAACACAGTACAATC 58.855 34.615 0.00 0.00 45.50 2.67
566 567 7.049799 AGGCATGTTTTTAACACAGTACAAT 57.950 32.000 0.00 0.00 45.50 2.71
567 568 6.458232 AGGCATGTTTTTAACACAGTACAA 57.542 33.333 0.00 0.00 45.50 2.41
568 569 7.753309 ATAGGCATGTTTTTAACACAGTACA 57.247 32.000 0.00 0.00 45.50 2.90
579 580 9.135189 ACACATGTCATATATAGGCATGTTTTT 57.865 29.630 22.92 13.91 45.09 1.94
580 581 8.696043 ACACATGTCATATATAGGCATGTTTT 57.304 30.769 22.92 15.45 45.09 2.43
581 582 8.570488 CAACACATGTCATATATAGGCATGTTT 58.430 33.333 22.92 18.05 45.09 2.83
582 583 7.720957 ACAACACATGTCATATATAGGCATGTT 59.279 33.333 22.92 14.35 45.09 2.71
584 585 7.388500 TCACAACACATGTCATATATAGGCATG 59.612 37.037 20.35 20.35 41.46 4.06
585 586 7.452562 TCACAACACATGTCATATATAGGCAT 58.547 34.615 0.00 0.00 41.46 4.40
586 587 6.825610 TCACAACACATGTCATATATAGGCA 58.174 36.000 0.00 0.00 41.46 4.75
587 588 7.912056 ATCACAACACATGTCATATATAGGC 57.088 36.000 0.00 0.00 41.46 3.93
591 592 9.304731 GCAAAAATCACAACACATGTCATATAT 57.695 29.630 0.00 0.00 41.46 0.86
592 593 8.302438 TGCAAAAATCACAACACATGTCATATA 58.698 29.630 0.00 0.00 41.46 0.86
593 594 7.116662 GTGCAAAAATCACAACACATGTCATAT 59.883 33.333 0.00 0.00 41.46 1.78
594 595 6.420306 GTGCAAAAATCACAACACATGTCATA 59.580 34.615 0.00 0.00 41.46 2.15
595 596 5.234757 GTGCAAAAATCACAACACATGTCAT 59.765 36.000 0.00 0.00 41.46 3.06
596 597 4.565962 GTGCAAAAATCACAACACATGTCA 59.434 37.500 0.00 0.00 41.46 3.58
597 598 4.805192 AGTGCAAAAATCACAACACATGTC 59.195 37.500 0.00 0.00 41.46 3.06
598 599 4.757594 AGTGCAAAAATCACAACACATGT 58.242 34.783 0.00 0.00 45.34 3.21
599 600 4.804665 TGAGTGCAAAAATCACAACACATG 59.195 37.500 0.00 0.00 36.93 3.21
600 601 4.805192 GTGAGTGCAAAAATCACAACACAT 59.195 37.500 14.36 0.00 42.30 3.21
601 602 4.172505 GTGAGTGCAAAAATCACAACACA 58.827 39.130 14.36 0.00 42.30 3.72
602 603 4.760227 GTGAGTGCAAAAATCACAACAC 57.240 40.909 14.36 0.00 42.30 3.32
607 608 5.713025 ACCATATGTGAGTGCAAAAATCAC 58.287 37.500 13.02 13.02 42.90 3.06
608 609 5.476254 TGACCATATGTGAGTGCAAAAATCA 59.524 36.000 1.24 0.00 0.00 2.57
609 610 5.953183 TGACCATATGTGAGTGCAAAAATC 58.047 37.500 1.24 0.00 0.00 2.17
610 611 5.981088 TGACCATATGTGAGTGCAAAAAT 57.019 34.783 1.24 0.00 0.00 1.82
611 612 5.336610 CCATGACCATATGTGAGTGCAAAAA 60.337 40.000 1.24 0.00 0.00 1.94
612 613 4.158209 CCATGACCATATGTGAGTGCAAAA 59.842 41.667 1.24 0.00 0.00 2.44
613 614 3.695556 CCATGACCATATGTGAGTGCAAA 59.304 43.478 1.24 0.00 0.00 3.68
614 615 3.281158 CCATGACCATATGTGAGTGCAA 58.719 45.455 1.24 0.00 0.00 4.08
615 616 2.921821 CCATGACCATATGTGAGTGCA 58.078 47.619 1.24 0.00 0.00 4.57
616 617 1.605710 GCCATGACCATATGTGAGTGC 59.394 52.381 1.24 0.00 0.00 4.40
617 618 3.204306 AGCCATGACCATATGTGAGTG 57.796 47.619 1.24 0.00 0.00 3.51
618 619 4.410228 AGTTAGCCATGACCATATGTGAGT 59.590 41.667 1.24 0.00 0.00 3.41
649 650 9.822185 GTATGAATTCAAAATTTAAGCATCCCT 57.178 29.630 13.09 0.00 0.00 4.20
733 737 9.186837 AGTAATTCGGATTGAGAGTAGTTTCTA 57.813 33.333 0.00 0.00 0.00 2.10
736 740 8.095169 ACAAGTAATTCGGATTGAGAGTAGTTT 58.905 33.333 0.00 0.00 0.00 2.66
743 747 9.667107 ATCTAAAACAAGTAATTCGGATTGAGA 57.333 29.630 0.00 0.00 0.00 3.27
748 752 9.840427 CACAAATCTAAAACAAGTAATTCGGAT 57.160 29.630 0.00 0.00 0.00 4.18
795 799 6.935771 ACCGGTACATCAAACACTAAAATGTA 59.064 34.615 4.49 0.00 33.01 2.29
805 809 5.607939 ATCAGATACCGGTACATCAAACA 57.392 39.130 18.55 0.00 0.00 2.83
873 1025 2.945080 TTGGAGATGAGATGATGGGC 57.055 50.000 0.00 0.00 0.00 5.36
978 1739 0.758685 TGGGCTCCTGTTTGGTTTGG 60.759 55.000 0.00 0.00 37.07 3.28
979 1740 0.389025 GTGGGCTCCTGTTTGGTTTG 59.611 55.000 0.00 0.00 37.07 2.93
980 1741 1.106944 CGTGGGCTCCTGTTTGGTTT 61.107 55.000 0.00 0.00 37.07 3.27
981 1742 1.528309 CGTGGGCTCCTGTTTGGTT 60.528 57.895 0.00 0.00 37.07 3.67
982 1743 1.779061 ATCGTGGGCTCCTGTTTGGT 61.779 55.000 0.00 0.00 37.07 3.67
1686 2447 1.595357 GACTACAAGGACGGTGGGG 59.405 63.158 0.00 0.00 0.00 4.96
1851 2612 1.669115 CCTCCTGAGCCACACAACG 60.669 63.158 0.00 0.00 0.00 4.10
1854 2615 0.764369 AGAACCTCCTGAGCCACACA 60.764 55.000 0.00 0.00 0.00 3.72
2058 2819 2.173356 TGATCCACCACCATTGATCTCC 59.827 50.000 0.00 0.00 35.69 3.71
2218 2979 3.935828 GCCTTAGCTTCTACACCTTTCAG 59.064 47.826 0.00 0.00 35.50 3.02
2258 3019 9.077885 TGAACTAAGAGTTGGCAAAATAATCTT 57.922 29.630 0.00 9.38 38.80 2.40
2292 3061 2.516930 CCCCAGTTAGGCATGGCG 60.517 66.667 14.30 0.00 35.10 5.69
2352 3121 7.523709 GCGGATAACCATATTGAATCAACCAAT 60.524 37.037 0.00 0.00 35.81 3.16
2377 3146 3.149981 AGGTTGCTTTCCTTTCTACTGC 58.850 45.455 0.00 0.00 30.18 4.40
2501 3270 9.787532 AGCATGTAAATTATTGATAACACACAC 57.212 29.630 0.00 0.00 0.00 3.82
2502 3271 9.786105 CAGCATGTAAATTATTGATAACACACA 57.214 29.630 0.00 0.00 0.00 3.72
2510 3285 5.507817 CCACGGCAGCATGTAAATTATTGAT 60.508 40.000 0.00 0.00 39.31 2.57
2522 3297 1.138036 CAACATCCACGGCAGCATG 59.862 57.895 0.00 0.00 40.87 4.06
2531 3306 4.445453 TGCTCAGTATCATCAACATCCAC 58.555 43.478 0.00 0.00 0.00 4.02
2535 3310 4.418973 AGCTGCTCAGTATCATCAACAT 57.581 40.909 0.00 0.00 0.00 2.71
2547 3322 3.555377 CCAGATAGATCCAAGCTGCTCAG 60.555 52.174 1.00 0.00 0.00 3.35
2614 3396 5.235305 AGTAATCAGCTAATGGTTTTGCG 57.765 39.130 0.00 0.00 38.41 4.85
2653 3435 3.575256 ACATGGCTGCTCAAAATTCTTGA 59.425 39.130 0.00 3.95 0.00 3.02
2663 3445 2.153645 CACAGTAAACATGGCTGCTCA 58.846 47.619 0.00 0.00 33.87 4.26
2674 3459 7.704899 ACAATTTAGGCTTGAAACACAGTAAAC 59.295 33.333 0.00 0.00 0.00 2.01
2680 3465 4.404073 ACCACAATTTAGGCTTGAAACACA 59.596 37.500 0.00 0.00 0.00 3.72
2711 3496 4.160329 TGGAACAGTAAGGTGAGTGAGAT 58.840 43.478 0.00 0.00 0.00 2.75
2718 3503 4.349636 TCAGGATTTGGAACAGTAAGGTGA 59.650 41.667 0.00 0.00 42.39 4.02
2721 3506 6.434028 TCAATTCAGGATTTGGAACAGTAAGG 59.566 38.462 4.62 0.00 42.39 2.69
2737 3522 6.429078 TGACAAGAATCAGACTTCAATTCAGG 59.571 38.462 0.00 0.00 32.92 3.86
2774 3561 9.703892 AAAACAAAATGGATGAATCGTTGAATA 57.296 25.926 0.00 0.00 0.00 1.75
2795 3582 7.411486 TCTGGTGTTGGAAAAAGATAAAACA 57.589 32.000 0.00 0.00 0.00 2.83
2796 3583 8.194769 TCTTCTGGTGTTGGAAAAAGATAAAAC 58.805 33.333 0.00 0.00 0.00 2.43
2799 3586 7.889873 TTCTTCTGGTGTTGGAAAAAGATAA 57.110 32.000 0.00 0.00 0.00 1.75
2800 3587 8.477419 AATTCTTCTGGTGTTGGAAAAAGATA 57.523 30.769 0.00 0.00 0.00 1.98
2801 3588 6.983906 ATTCTTCTGGTGTTGGAAAAAGAT 57.016 33.333 0.00 0.00 0.00 2.40
2802 3589 6.790232 AATTCTTCTGGTGTTGGAAAAAGA 57.210 33.333 0.00 0.00 0.00 2.52
2822 3609 4.257731 ACTGTTTGCCAAACCGAAAAATT 58.742 34.783 17.16 0.00 40.67 1.82
2880 3667 3.057386 TGGCAATATGACAGCACTGTTTG 60.057 43.478 4.52 6.65 45.05 2.93
2910 3697 0.392729 CCTCTTCAGCTGGCCTCTTG 60.393 60.000 15.13 0.00 0.00 3.02
2925 3712 2.635427 GACAACTTGAGTTCTCCCCTCT 59.365 50.000 0.00 0.00 35.83 3.69
2926 3713 2.368875 TGACAACTTGAGTTCTCCCCTC 59.631 50.000 0.00 0.00 35.83 4.30
2948 3735 4.744570 TCCACGATGTTCTCATACTTGTC 58.255 43.478 0.00 0.00 34.06 3.18
2949 3736 4.801330 TCCACGATGTTCTCATACTTGT 57.199 40.909 0.00 0.00 34.06 3.16
2950 3737 6.457392 CCATTTCCACGATGTTCTCATACTTG 60.457 42.308 0.00 0.00 34.06 3.16
2951 3738 5.586243 CCATTTCCACGATGTTCTCATACTT 59.414 40.000 0.00 0.00 34.06 2.24
2952 3739 5.118990 CCATTTCCACGATGTTCTCATACT 58.881 41.667 0.00 0.00 34.06 2.12
2953 3740 4.876107 ACCATTTCCACGATGTTCTCATAC 59.124 41.667 0.00 0.00 34.06 2.39
2954 3741 5.097742 ACCATTTCCACGATGTTCTCATA 57.902 39.130 0.00 0.00 34.06 2.15
2955 3742 3.941483 GACCATTTCCACGATGTTCTCAT 59.059 43.478 0.00 0.00 36.95 2.90
2956 3743 3.334691 GACCATTTCCACGATGTTCTCA 58.665 45.455 0.00 0.00 0.00 3.27
2957 3744 2.678336 GGACCATTTCCACGATGTTCTC 59.322 50.000 0.00 0.00 45.10 2.87
2958 3745 2.711542 GGACCATTTCCACGATGTTCT 58.288 47.619 0.00 0.00 45.10 3.01
2990 3777 0.522180 CGTGACGGAACTCACTAGCT 59.478 55.000 0.00 0.00 38.79 3.32
3023 3811 3.050619 CACTAACTTCTCGTGTGGTCAC 58.949 50.000 0.00 0.00 40.79 3.67
3071 3859 5.412904 GGATTCAACCTCCAAGAAGTAACAG 59.587 44.000 0.00 0.00 32.72 3.16
3081 3869 1.425066 AGCACTGGATTCAACCTCCAA 59.575 47.619 0.00 0.00 42.12 3.53
3131 3920 7.672660 TCAGGATTCTAAAGTCAGGTTACTGTA 59.327 37.037 0.00 0.00 45.14 2.74
3212 4002 1.831286 GCATTGATGGGGAGCCTGG 60.831 63.158 0.00 0.00 0.00 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.