Multiple sequence alignment - TraesCS4A01G230100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G230100 chr4A 100.000 9672 0 0 1 9672 539287267 539296938 0.000000e+00 17861.0
1 TraesCS4A01G230100 chr4B 94.417 4012 161 26 905 4887 86073365 86069388 0.000000e+00 6109.0
2 TraesCS4A01G230100 chr4B 91.575 2101 116 24 6897 8948 86066301 86064213 0.000000e+00 2843.0
3 TraesCS4A01G230100 chr4B 95.710 1282 39 7 4937 6217 86069389 86068123 0.000000e+00 2049.0
4 TraesCS4A01G230100 chr4B 91.011 267 6 3 6318 6566 86066714 86066448 2.590000e-90 344.0
5 TraesCS4A01G230100 chr4B 86.780 295 22 10 9334 9614 86064222 86063931 7.290000e-81 313.0
6 TraesCS4A01G230100 chr4B 96.774 124 4 0 6727 6850 86066425 86066302 3.540000e-49 207.0
7 TraesCS4A01G230100 chr4B 85.455 110 8 4 6621 6729 612271507 612271405 3.690000e-19 108.0
8 TraesCS4A01G230100 chr6B 93.843 4028 177 28 898 4887 551804678 551800684 0.000000e+00 5999.0
9 TraesCS4A01G230100 chr6B 92.705 1974 111 20 6897 8852 551797839 551795881 0.000000e+00 2817.0
10 TraesCS4A01G230100 chr6B 97.194 1283 33 3 4937 6217 551800685 551799404 0.000000e+00 2167.0
11 TraesCS4A01G230100 chr6B 90.262 267 8 5 6318 6566 551798252 551797986 5.600000e-87 333.0
12 TraesCS4A01G230100 chr6B 84.226 336 40 10 326 658 551809118 551808793 2.030000e-81 315.0
13 TraesCS4A01G230100 chr6B 83.279 305 22 14 9334 9614 551795666 551795367 4.480000e-63 254.0
14 TraesCS4A01G230100 chr6B 96.774 124 4 0 6727 6850 551797963 551797840 3.540000e-49 207.0
15 TraesCS4A01G230100 chr6B 81.553 103 12 6 751 851 698042616 698042713 2.900000e-10 78.7
16 TraesCS4A01G230100 chr4D 95.241 3215 137 10 3303 6506 57486846 57483637 0.000000e+00 5075.0
17 TraesCS4A01G230100 chr4D 93.004 2473 92 38 6499 8948 57480568 57478154 0.000000e+00 3533.0
18 TraesCS4A01G230100 chr4D 95.414 1919 52 14 882 2780 57489431 57487529 0.000000e+00 3024.0
19 TraesCS4A01G230100 chr4D 91.225 547 39 7 1 541 57490315 57489772 0.000000e+00 736.0
20 TraesCS4A01G230100 chr4D 92.653 490 23 4 2822 3306 57487525 57487044 0.000000e+00 693.0
21 TraesCS4A01G230100 chr4D 88.889 333 27 6 526 853 57489759 57489432 1.510000e-107 401.0
22 TraesCS4A01G230100 chr4D 86.102 295 23 9 9334 9612 57478163 57477871 1.580000e-77 302.0
23 TraesCS4A01G230100 chr4D 87.097 93 11 1 720 811 507001060 507001152 4.780000e-18 104.0
24 TraesCS4A01G230100 chr7A 88.753 409 31 9 8935 9332 579566157 579565753 4.060000e-133 486.0
25 TraesCS4A01G230100 chr7A 88.665 397 32 7 8949 9334 57206016 57206410 1.140000e-128 472.0
26 TraesCS4A01G230100 chr3A 89.169 397 34 4 8944 9333 110319101 110318707 4.060000e-133 486.0
27 TraesCS4A01G230100 chr3A 89.114 395 32 5 8948 9333 1917925 1918317 1.890000e-131 481.0
28 TraesCS4A01G230100 chr3A 89.053 338 35 2 4608 4945 259332837 259333172 1.500000e-112 418.0
29 TraesCS4A01G230100 chr1A 89.367 395 30 6 8949 9333 581867095 581866703 4.060000e-133 486.0
30 TraesCS4A01G230100 chr1A 88.537 410 34 8 8943 9343 266045021 266045426 1.460000e-132 484.0
31 TraesCS4A01G230100 chr5A 88.608 395 32 6 8950 9334 450223193 450223584 1.470000e-127 468.0
32 TraesCS4A01G230100 chr5A 88.030 401 36 6 8941 9333 667931040 667930644 1.900000e-126 464.0
33 TraesCS4A01G230100 chr5A 88.071 394 36 5 8949 9333 570173337 570172946 3.180000e-124 457.0
34 TraesCS4A01G230100 chr5A 87.778 360 40 3 4608 4966 139934572 139934928 1.500000e-112 418.0
35 TraesCS4A01G230100 chr5A 86.885 183 24 0 2567 2749 457077000 457077182 1.270000e-48 206.0
36 TraesCS4A01G230100 chr5A 90.323 93 4 2 6637 6729 605589175 605589088 6.140000e-22 117.0
37 TraesCS4A01G230100 chr5A 84.483 116 10 5 719 828 663720668 663720555 3.690000e-19 108.0
38 TraesCS4A01G230100 chr5A 86.905 84 11 0 6011 6094 457080528 457080611 2.880000e-15 95.3
39 TraesCS4A01G230100 chr2D 90.090 333 32 1 4612 4944 388834026 388833695 1.930000e-116 431.0
40 TraesCS4A01G230100 chr2D 88.921 343 35 3 4603 4945 380416899 380416560 4.180000e-113 420.0
41 TraesCS4A01G230100 chr2D 91.489 94 3 2 6635 6728 14895272 14895360 3.670000e-24 124.0
42 TraesCS4A01G230100 chr2D 100.000 28 0 0 858 885 524003538 524003511 1.800000e-02 52.8
43 TraesCS4A01G230100 chr5D 88.301 359 39 3 4608 4966 125808027 125808382 2.500000e-115 427.0
44 TraesCS4A01G230100 chr5D 80.435 322 57 6 9012 9331 509025360 509025677 3.490000e-59 241.0
45 TraesCS4A01G230100 chr5D 86.885 183 24 0 2567 2749 354935556 354935738 1.270000e-48 206.0
46 TraesCS4A01G230100 chr5D 86.905 84 11 0 6011 6094 354938961 354939044 2.880000e-15 95.3
47 TraesCS4A01G230100 chr5D 78.102 137 23 5 720 854 502539788 502539919 8.050000e-11 80.5
48 TraesCS4A01G230100 chr3B 89.053 338 35 2 4608 4945 293747630 293747965 1.500000e-112 418.0
49 TraesCS4A01G230100 chr5B 86.339 183 25 0 2567 2749 419721033 419721215 5.920000e-47 200.0
50 TraesCS4A01G230100 chr5B 86.792 106 9 2 6625 6730 482280057 482279957 7.940000e-21 113.0
51 TraesCS4A01G230100 chr5B 85.714 84 12 0 6011 6094 419724420 419724503 1.340000e-13 89.8
52 TraesCS4A01G230100 chr6D 89.000 100 6 2 6634 6733 340997479 340997385 1.710000e-22 119.0
53 TraesCS4A01G230100 chr2B 90.426 94 4 2 6635 6728 17023932 17024020 1.710000e-22 119.0
54 TraesCS4A01G230100 chr2B 79.528 127 20 5 729 853 771489499 771489377 1.730000e-12 86.1
55 TraesCS4A01G230100 chr7D 88.889 99 4 4 6635 6733 5068083 5068174 2.210000e-21 115.0
56 TraesCS4A01G230100 chr1D 95.714 70 3 0 6659 6728 355081200 355081131 7.940000e-21 113.0
57 TraesCS4A01G230100 chr3D 83.333 84 13 1 715 798 519958759 519958677 1.040000e-09 76.8
58 TraesCS4A01G230100 chr3D 100.000 28 0 0 4126 4153 31993342 31993315 1.800000e-02 52.8
59 TraesCS4A01G230100 chr7B 97.222 36 1 0 4120 4155 673585626 673585661 2.920000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G230100 chr4A 539287267 539296938 9671 False 17861.000000 17861 100.000000 1 9672 1 chr4A.!!$F1 9671
1 TraesCS4A01G230100 chr4B 86063931 86073365 9434 True 1977.500000 6109 92.711167 905 9614 6 chr4B.!!$R2 8709
2 TraesCS4A01G230100 chr6B 551795367 551804678 9311 True 1962.833333 5999 92.342833 898 9614 6 chr6B.!!$R2 8716
3 TraesCS4A01G230100 chr4D 57477871 57490315 12444 True 1966.285714 5075 91.789714 1 9612 7 chr4D.!!$R1 9611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
950 997 0.040499 AGGAGGAGGAGCGAAGAACT 59.960 55.0 0.00 0.0 0.00 3.01 F
1210 1268 0.473886 CTATAGGGTGGGGTGAGGGG 60.474 65.0 0.00 0.0 0.00 4.79 F
2374 2446 0.823356 GGTTCCTGTTGCCTGCTTCA 60.823 55.0 0.00 0.0 0.00 3.02 F
2854 2939 0.958822 AAGAACAAACATGTCCCCGC 59.041 50.0 0.00 0.0 0.00 6.13 F
4028 4337 0.323302 TGAAGTGCGTATGCCAAGGA 59.677 50.0 4.05 0.0 41.78 3.36 F
4776 5095 0.893727 ATGTCAAAAGGGGTCGTGGC 60.894 55.0 0.00 0.0 0.00 5.01 F
4893 5212 0.249447 CTATCCACGCGCCAGAATCA 60.249 55.0 5.73 0.0 0.00 2.57 F
6269 7973 0.329261 ATGGGGATATGGATGCACCG 59.671 55.0 0.00 0.0 42.61 4.94 F
7083 11882 2.032924 CCCGCGTCTATCAATTTTTCCC 59.967 50.0 4.92 0.0 0.00 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2921 3006 0.035439 GAACAGGAGGCGAATTGGGA 60.035 55.000 0.00 0.00 0.00 4.37 R
3072 3161 8.843262 CATCACATATCAGAAAAGGCTTTCATA 58.157 33.333 13.76 7.92 42.99 2.15 R
3530 3829 0.798776 CCCTTGATGCACGAGTTGAC 59.201 55.000 0.00 0.00 0.00 3.18 R
4629 4948 0.175073 CTACCCCAACTCTACCACGC 59.825 60.000 0.00 0.00 0.00 5.34 R
4883 5202 1.742761 ACCAAGTCATGATTCTGGCG 58.257 50.000 16.51 0.00 0.00 5.69 R
6250 7954 0.329261 CGGTGCATCCATATCCCCAT 59.671 55.000 0.00 0.00 35.57 4.00 R
6636 11435 2.920941 ACAGTAGGACAGAGGGAGTAGT 59.079 50.000 0.00 0.00 0.00 2.73 R
7767 12599 0.310854 CCAAACGAGGCACAGGAAAC 59.689 55.000 0.00 0.00 0.00 2.78 R
8967 13971 0.390124 GTGGGTGCATATGCCAATGG 59.610 55.000 24.54 0.00 41.18 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.371087 GCTTCACTAGCCTAGGCAC 57.629 57.895 34.70 7.47 44.48 5.01
73 74 0.179034 CAGTGAGATTAGCCTGGCCC 60.179 60.000 16.57 2.34 0.00 5.80
92 94 3.140814 GGCCATGAAAGGGACGCC 61.141 66.667 0.00 0.00 33.72 5.68
100 102 2.692273 GAAAGGGACGCCTGGGTTGT 62.692 60.000 0.00 0.00 0.00 3.32
110 112 2.629051 GCCTGGGTTGTAGACATACAC 58.371 52.381 0.00 0.00 41.62 2.90
130 132 6.893958 ACACGATCTTGAGTTATTTAGCAG 57.106 37.500 6.16 0.00 0.00 4.24
134 137 5.982516 CGATCTTGAGTTATTTAGCAGAGCT 59.017 40.000 0.00 0.00 43.41 4.09
146 149 3.311486 AGCAGAGCTCTGTTGTACTTC 57.689 47.619 37.25 21.73 45.45 3.01
162 165 5.116180 TGTACTTCTTATCAAATCAGCCCG 58.884 41.667 0.00 0.00 0.00 6.13
185 188 9.503427 CCCGTCAATCTTGTTTCTTAATATTTC 57.497 33.333 0.00 0.00 0.00 2.17
193 196 9.912634 TCTTGTTTCTTAATATTTCTGCCTTTG 57.087 29.630 0.00 0.00 0.00 2.77
194 197 9.912634 CTTGTTTCTTAATATTTCTGCCTTTGA 57.087 29.630 0.00 0.00 0.00 2.69
202 205 0.110486 TTCTGCCTTTGACCCAGACC 59.890 55.000 0.00 0.00 35.52 3.85
209 212 2.307098 CCTTTGACCCAGACCAGATCTT 59.693 50.000 0.00 0.00 34.41 2.40
210 213 3.604582 CTTTGACCCAGACCAGATCTTC 58.395 50.000 0.00 0.00 34.41 2.87
214 217 2.569404 GACCCAGACCAGATCTTCAACT 59.431 50.000 0.00 0.00 34.41 3.16
227 230 6.147821 CAGATCTTCAACTAAACAACATCCGT 59.852 38.462 0.00 0.00 0.00 4.69
261 265 6.349694 CCTGGTAAGGCAAAATTTCTCTCTTC 60.350 42.308 0.00 0.00 36.56 2.87
264 268 6.657117 GGTAAGGCAAAATTTCTCTCTTCTCT 59.343 38.462 0.00 0.00 0.00 3.10
281 288 1.058428 TCTAGGCTGCCAGGCATCAT 61.058 55.000 22.65 11.74 44.19 2.45
287 294 1.202382 GCTGCCAGGCATCATTTTCTC 60.202 52.381 16.64 0.00 38.13 2.87
292 299 2.029623 CAGGCATCATTTTCTCCCAGG 58.970 52.381 0.00 0.00 0.00 4.45
372 379 3.030291 TGGTGATGCTGTTGTCCTTTTT 58.970 40.909 0.00 0.00 0.00 1.94
378 385 4.998671 TGCTGTTGTCCTTTTTGAATGA 57.001 36.364 0.00 0.00 0.00 2.57
403 410 5.393962 GTGAATGAATTCTTTCACCTTCCG 58.606 41.667 35.15 0.00 46.55 4.30
416 423 2.293122 CACCTTCCGAAGCACAATTTGA 59.707 45.455 2.79 0.00 0.00 2.69
421 428 5.356882 TTCCGAAGCACAATTTGAAGTAG 57.643 39.130 2.79 0.00 0.00 2.57
430 437 7.547227 AGCACAATTTGAAGTAGAAAAACACT 58.453 30.769 2.79 0.00 0.00 3.55
445 452 0.250467 ACACTTTGTGCTCGCATCCT 60.250 50.000 0.00 0.00 36.98 3.24
468 475 1.358152 CCTTAACCCAGTGACCCTCA 58.642 55.000 0.00 0.00 0.00 3.86
472 479 2.069165 AACCCAGTGACCCTCAAGGC 62.069 60.000 0.00 0.00 40.58 4.35
512 519 4.217510 CCCTCAATTGAGCCAATCCAATA 58.782 43.478 27.01 0.00 40.75 1.90
537 544 4.698304 CCCTTTGCTTTAACATCCTTCGTA 59.302 41.667 0.00 0.00 0.00 3.43
541 548 7.494625 CCTTTGCTTTAACATCCTTCGTAGATA 59.505 37.037 0.00 0.00 35.04 1.98
542 549 8.420374 TTTGCTTTAACATCCTTCGTAGATAG 57.580 34.615 0.00 0.00 35.04 2.08
543 550 7.342769 TGCTTTAACATCCTTCGTAGATAGA 57.657 36.000 0.00 0.00 35.04 1.98
544 551 7.778083 TGCTTTAACATCCTTCGTAGATAGAA 58.222 34.615 0.00 0.00 35.04 2.10
545 552 8.421784 TGCTTTAACATCCTTCGTAGATAGAAT 58.578 33.333 0.00 0.00 35.04 2.40
546 553 9.262358 GCTTTAACATCCTTCGTAGATAGAATT 57.738 33.333 0.00 0.00 35.04 2.17
575 610 1.070758 GCGAGGCATCTGGATTCCTAA 59.929 52.381 3.95 0.00 34.57 2.69
587 622 5.076598 TCTGGATTCCTAAGTATCTAGGCCT 59.923 44.000 11.78 11.78 38.73 5.19
657 695 7.816640 AGTAAAATACATCGTGCTGATTGTTT 58.183 30.769 0.00 0.00 34.13 2.83
718 757 2.987149 CAGTAATGCTTCGTCTGTCGTT 59.013 45.455 0.00 0.00 40.80 3.85
721 760 5.288712 CAGTAATGCTTCGTCTGTCGTTAAT 59.711 40.000 0.00 0.00 40.80 1.40
727 766 5.571741 TGCTTCGTCTGTCGTTAATCTTAAG 59.428 40.000 0.00 0.00 40.80 1.85
740 779 6.590292 CGTTAATCTTAAGATGATATGCCGGT 59.410 38.462 18.61 1.82 34.49 5.28
757 796 1.678123 CGGTCCAGTCTCTCGAAGGTA 60.678 57.143 0.00 0.00 0.00 3.08
764 803 4.882427 CCAGTCTCTCGAAGGTACTCATAA 59.118 45.833 0.00 0.00 38.49 1.90
765 804 5.357314 CCAGTCTCTCGAAGGTACTCATAAA 59.643 44.000 0.00 0.00 38.49 1.40
767 806 6.316640 CAGTCTCTCGAAGGTACTCATAAAGA 59.683 42.308 0.00 0.00 38.49 2.52
774 813 8.112016 TCGAAGGTACTCATAAAGATAGGATG 57.888 38.462 0.00 0.00 38.49 3.51
784 823 4.465632 AAAGATAGGATGTGCGTGTGTA 57.534 40.909 0.00 0.00 0.00 2.90
839 879 3.023591 GCTTGCTTGCGTCCGTACC 62.024 63.158 0.00 0.00 0.00 3.34
847 887 0.243365 TGCGTCCGTACCGTGTTAAT 59.757 50.000 0.00 0.00 0.00 1.40
853 893 5.541008 CGTCCGTACCGTGTTAATAAAAAG 58.459 41.667 0.00 0.00 0.00 2.27
854 894 5.118510 CGTCCGTACCGTGTTAATAAAAAGT 59.881 40.000 0.00 0.00 0.00 2.66
855 895 6.306837 CGTCCGTACCGTGTTAATAAAAAGTA 59.693 38.462 0.00 0.00 0.00 2.24
856 896 7.009174 CGTCCGTACCGTGTTAATAAAAAGTAT 59.991 37.037 0.00 0.00 0.00 2.12
857 897 8.655970 GTCCGTACCGTGTTAATAAAAAGTATT 58.344 33.333 0.00 0.00 0.00 1.89
858 898 8.868916 TCCGTACCGTGTTAATAAAAAGTATTC 58.131 33.333 0.00 0.00 0.00 1.75
859 899 8.655092 CCGTACCGTGTTAATAAAAAGTATTCA 58.345 33.333 0.00 0.00 0.00 2.57
873 913 8.574196 AAAAAGTATTCATCTGTTTTGGAACG 57.426 30.769 0.00 0.00 38.65 3.95
874 914 5.880054 AGTATTCATCTGTTTTGGAACGG 57.120 39.130 0.00 0.00 42.39 4.44
878 918 3.717842 TCTGTTTTGGAACGGAGGG 57.282 52.632 0.00 0.00 44.24 4.30
879 919 1.133363 TCTGTTTTGGAACGGAGGGA 58.867 50.000 0.00 0.00 44.24 4.20
880 920 1.071699 TCTGTTTTGGAACGGAGGGAG 59.928 52.381 0.00 0.00 44.24 4.30
892 932 2.835764 ACGGAGGGAGTAATGCTTTGTA 59.164 45.455 0.00 0.00 0.00 2.41
895 935 4.137543 GGAGGGAGTAATGCTTTGTATGG 58.862 47.826 0.00 0.00 0.00 2.74
950 997 0.040499 AGGAGGAGGAGCGAAGAACT 59.960 55.000 0.00 0.00 0.00 3.01
1206 1264 2.510330 TCTCTCTATAGGGTGGGGTGA 58.490 52.381 0.00 0.00 0.00 4.02
1207 1265 2.447429 TCTCTCTATAGGGTGGGGTGAG 59.553 54.545 0.00 0.00 0.00 3.51
1208 1266 1.503784 TCTCTATAGGGTGGGGTGAGG 59.496 57.143 0.00 0.00 0.00 3.86
1209 1267 0.566176 TCTATAGGGTGGGGTGAGGG 59.434 60.000 0.00 0.00 0.00 4.30
1210 1268 0.473886 CTATAGGGTGGGGTGAGGGG 60.474 65.000 0.00 0.00 0.00 4.79
1211 1269 2.631457 TATAGGGTGGGGTGAGGGGC 62.631 65.000 0.00 0.00 0.00 5.80
1226 1289 1.481056 GGGGCGGGCAGTACTGATAT 61.481 60.000 27.08 0.00 0.00 1.63
1269 1332 2.202570 CCGTCACGCGAACCCTAG 60.203 66.667 15.93 0.00 44.77 3.02
1319 1383 3.201290 CCATCCATTTCCAAGACGAGAG 58.799 50.000 0.00 0.00 0.00 3.20
1345 1409 1.004044 GATCCATCCATCCATTCGCCT 59.996 52.381 0.00 0.00 0.00 5.52
1459 1527 3.057526 GCGGGGTATTAATTTGGCTGATC 60.058 47.826 0.00 0.00 0.00 2.92
1520 1588 2.834549 CTGGTGGAGACCTGATACTGTT 59.165 50.000 0.00 0.00 42.49 3.16
1693 1765 2.398554 CGTCCCTGTTTCGGCCATG 61.399 63.158 2.24 0.00 0.00 3.66
1846 1918 2.032981 CTTCCAGCGCAACCACTTT 58.967 52.632 11.47 0.00 0.00 2.66
1906 1978 2.906354 ACCGAACTGTATCCTGAATGC 58.094 47.619 0.00 0.00 0.00 3.56
1912 1984 4.408182 ACTGTATCCTGAATGCTGTACC 57.592 45.455 0.00 0.00 31.91 3.34
2053 2125 3.050275 GAGCTGTTGCCGGACCAC 61.050 66.667 5.05 0.00 40.80 4.16
2374 2446 0.823356 GGTTCCTGTTGCCTGCTTCA 60.823 55.000 0.00 0.00 0.00 3.02
2481 2556 3.780626 ACTTTAGGTCTCTAGTGCACCT 58.219 45.455 14.63 15.53 43.32 4.00
2531 2606 9.533253 AGAATATTATTTTGGAGGCAAAATTCG 57.467 29.630 0.39 0.00 42.59 3.34
2550 2625 3.252400 TCGATTGCAATTTGTTGATGCC 58.748 40.909 14.33 0.00 39.31 4.40
2565 2640 5.106317 TGTTGATGCCGGTTTTCTATTTCTC 60.106 40.000 1.90 0.00 0.00 2.87
2643 2718 1.901833 TCAAGATGTACTGGAGCTGCA 59.098 47.619 7.99 7.99 0.00 4.41
2791 2875 7.816640 TCACATCTTATTTTCCACTTTACTGC 58.183 34.615 0.00 0.00 0.00 4.40
2852 2937 5.010282 AGTGATAAGAACAAACATGTCCCC 58.990 41.667 0.00 0.00 0.00 4.81
2854 2939 0.958822 AAGAACAAACATGTCCCCGC 59.041 50.000 0.00 0.00 0.00 6.13
2874 2959 4.275936 CCGCCTTTCTATTCCCAACAATAG 59.724 45.833 0.00 0.00 37.60 1.73
2887 2972 6.862209 TCCCAACAATAGTTATGCAACATTC 58.138 36.000 0.00 0.00 37.10 2.67
2896 2981 6.780457 AGTTATGCAACATTCCTTAGCATT 57.220 33.333 3.41 0.00 42.76 3.56
2898 2983 4.660789 ATGCAACATTCCTTAGCATTCC 57.339 40.909 0.00 0.00 42.76 3.01
3072 3161 8.294577 GGTTGATACTTTTAGTGGAAAACGAAT 58.705 33.333 0.00 0.00 33.39 3.34
3330 3627 6.790232 TTGTCATGATGATACTCCAGTGTA 57.210 37.500 0.00 0.00 0.00 2.90
3528 3827 5.050972 CGTTAAATTCTACGAGGAGATTGGC 60.051 44.000 6.48 0.00 40.03 4.52
3530 3829 3.742433 ATTCTACGAGGAGATTGGCAG 57.258 47.619 0.00 0.00 0.00 4.85
3661 3967 5.358160 AGGATCAGGCATTAGCTTGTTTAAC 59.642 40.000 0.00 0.00 46.84 2.01
3823 4129 3.629398 GGAAGTTCCATGGCTGTAAGATG 59.371 47.826 17.44 0.00 36.28 2.90
3941 4249 7.228308 AGCTAATGAAATACAGAGAAGAATGGC 59.772 37.037 0.00 0.00 0.00 4.40
3956 4264 2.315925 ATGGCGACCTATTGTGAGTG 57.684 50.000 0.00 0.00 0.00 3.51
4028 4337 0.323302 TGAAGTGCGTATGCCAAGGA 59.677 50.000 4.05 0.00 41.78 3.36
4045 4354 4.014406 CAAGGATTTTAAGGCGGTTAGGT 58.986 43.478 0.00 0.00 0.00 3.08
4241 4551 2.105806 TAGCACATCACCGCACACCA 62.106 55.000 0.00 0.00 0.00 4.17
4484 4797 4.292186 AGATACTTTTCTGCCTGCTTGA 57.708 40.909 0.00 0.00 0.00 3.02
4489 4802 5.789643 ACTTTTCTGCCTGCTTGATTTAA 57.210 34.783 0.00 0.00 0.00 1.52
4540 4853 6.565811 GCATGTTTATGTTTGTCTCGTCTTCA 60.566 38.462 0.00 0.00 36.65 3.02
4578 4891 6.089249 AGGGATTTGCTTTTAGTTCTGTTG 57.911 37.500 0.00 0.00 0.00 3.33
4629 4948 4.541973 TCAGGTCCGGAATGATGATATG 57.458 45.455 5.23 0.00 0.00 1.78
4708 5027 3.641046 TGGTTTGGGCATATACAATGCT 58.359 40.909 9.60 0.00 44.02 3.79
4764 5083 4.764679 AAAGCGTGCTGATAATGTCAAA 57.235 36.364 0.00 0.00 36.14 2.69
4767 5086 3.127548 AGCGTGCTGATAATGTCAAAAGG 59.872 43.478 0.00 0.00 36.14 3.11
4776 5095 0.893727 ATGTCAAAAGGGGTCGTGGC 60.894 55.000 0.00 0.00 0.00 5.01
4804 5123 3.715648 ACTTGATATGGGAGGAGTCCT 57.284 47.619 12.85 12.85 43.36 3.85
4883 5202 2.596904 TGGAAGTTAGCTATCCACGC 57.403 50.000 10.01 0.00 38.30 5.34
4891 5210 1.595382 GCTATCCACGCGCCAGAAT 60.595 57.895 5.73 0.00 0.00 2.40
4893 5212 0.249447 CTATCCACGCGCCAGAATCA 60.249 55.000 5.73 0.00 0.00 2.57
4917 5236 6.494893 TGACTTGGTTTCGAGATTTTATGG 57.505 37.500 0.00 0.00 0.00 2.74
4927 5246 7.519032 TTCGAGATTTTATGGGTTTCAACTT 57.481 32.000 0.00 0.00 0.00 2.66
4929 5248 7.947282 TCGAGATTTTATGGGTTTCAACTTTT 58.053 30.769 0.00 0.00 0.00 2.27
4948 5267 2.990740 TGCCTACCCCAACTTGAAAT 57.009 45.000 0.00 0.00 0.00 2.17
5052 5372 6.041423 TCTATGTGATCAGAGAAACTGCAA 57.959 37.500 0.00 0.00 45.38 4.08
5063 5383 7.584987 TCAGAGAAACTGCAAATAAGTTTAGC 58.415 34.615 1.43 0.00 45.50 3.09
5196 5516 5.452078 TTTAGGTGAAATGGCTGTTTCAG 57.548 39.130 15.52 0.00 45.71 3.02
5209 5529 4.709886 GGCTGTTTCAGGGGTGTAAAATAT 59.290 41.667 0.00 0.00 31.21 1.28
5262 5582 4.757149 ACAGCCTTGTTATTGAGTTGTCTC 59.243 41.667 0.00 0.00 36.31 3.36
5544 5864 7.327275 GTCTAGATAGGAAAACATCACTATGCG 59.673 40.741 0.00 0.00 36.50 4.73
5600 5920 3.801594 ACGCAATTGGACAATCACAAAAC 59.198 39.130 7.72 0.00 0.00 2.43
5950 6271 7.285858 TGTTACCCAGTGTTTTAGTGCTTTTAT 59.714 33.333 0.00 0.00 0.00 1.40
6241 7945 3.249189 GTGACCTGTGGGCTCCCA 61.249 66.667 2.93 2.93 45.02 4.37
6250 7954 3.407967 GGGCTCCCATGGTCCGAA 61.408 66.667 11.73 0.00 35.81 4.30
6269 7973 0.329261 ATGGGGATATGGATGCACCG 59.671 55.000 0.00 0.00 42.61 4.94
6285 7989 5.517322 TGCACCGTACAACCTTTTAATTT 57.483 34.783 0.00 0.00 0.00 1.82
6566 11365 4.805719 GCTTCTCCTTTGAACAACCTTTTG 59.194 41.667 0.00 0.00 38.83 2.44
6568 11367 5.323371 TCTCCTTTGAACAACCTTTTGTG 57.677 39.130 0.00 0.00 45.69 3.33
6632 11431 8.181904 ACTTGGTTTCTCAATAACATGTCATT 57.818 30.769 0.00 0.00 0.00 2.57
6660 11459 5.910003 ACTACTCCCTCTGTCCTACTGTATA 59.090 44.000 0.00 0.00 0.00 1.47
7083 11882 2.032924 CCCGCGTCTATCAATTTTTCCC 59.967 50.000 4.92 0.00 0.00 3.97
7496 12296 2.295070 GGCCACGAGGTAATGTTTTGTT 59.705 45.455 0.00 0.00 37.19 2.83
7511 12311 2.338577 TTGTTGGCCAAAAACCATGG 57.661 45.000 22.47 11.19 41.08 3.66
7606 12424 9.661563 TGATTTAAAATTCTAGTACCATGTCGT 57.338 29.630 0.00 0.00 0.00 4.34
7645 12463 9.688592 CTAGAAAATATCAATGCTCCATTTTCC 57.311 33.333 12.17 0.00 42.49 3.13
7646 12464 8.315220 AGAAAATATCAATGCTCCATTTTCCT 57.685 30.769 12.17 1.62 42.49 3.36
7648 12466 7.909485 AAATATCAATGCTCCATTTTCCTCT 57.091 32.000 0.00 0.00 31.05 3.69
7649 12467 7.521871 AATATCAATGCTCCATTTTCCTCTC 57.478 36.000 0.00 0.00 31.05 3.20
7681 12513 3.247563 TCTCGCATGTTGTCGAAAAAC 57.752 42.857 5.50 5.50 34.07 2.43
7794 12626 0.678366 TGCCTCGTTTGGTTGTGTGT 60.678 50.000 0.00 0.00 0.00 3.72
7817 12649 7.225538 GTGTGATCAATATGGTTCTCAGGTTAG 59.774 40.741 0.00 0.00 0.00 2.34
7851 12683 3.584406 ATCTGTCAGTACACTCTGCAC 57.416 47.619 0.00 0.00 35.63 4.57
7911 12743 0.896226 GTAGTCGGGAGCAGTTCCTT 59.104 55.000 2.91 0.00 45.98 3.36
7935 12767 2.029020 CCTGCAGTGACAGTAGCAACTA 60.029 50.000 13.81 0.00 36.44 2.24
8045 12879 7.819900 AGTCACCAGTGATCAGTTATTAGTTTC 59.180 37.037 3.41 0.00 42.18 2.78
8331 13165 6.274157 TGTACAGCAAAGAAAACCTTTTCA 57.726 33.333 12.02 0.00 46.81 2.69
8384 13222 2.026641 GTACTGTAGGCCGACATACCA 58.973 52.381 19.70 2.25 0.00 3.25
8400 13238 0.391661 ACCACTGTTAGCTCCGCATG 60.392 55.000 0.00 0.00 0.00 4.06
8474 13312 6.527722 AGCATTCATAAATTGTGTTGTTAGCG 59.472 34.615 0.00 0.00 0.00 4.26
8538 13376 2.069273 CGTCTGGGTGTTCAAGCTTAG 58.931 52.381 0.00 0.00 0.00 2.18
8580 13422 5.946942 AGTCATGTGTTGATAGAGATGGT 57.053 39.130 0.00 0.00 36.54 3.55
8602 13469 1.067142 TGGTTGCTGCGTCTACTAAGG 60.067 52.381 0.00 0.00 0.00 2.69
8640 13507 4.810491 GTGTTTGCTCCAAAAATGTGTGAT 59.190 37.500 0.00 0.00 35.03 3.06
8675 13543 3.829601 GGTGGTGGTTTATTGGTTGATGA 59.170 43.478 0.00 0.00 0.00 2.92
8748 13623 2.983030 GGACACGCATTGGGCACA 60.983 61.111 0.00 0.00 45.17 4.57
8806 13682 5.901552 TCTGCGTTTTCCTCTTTTCATTTT 58.098 33.333 0.00 0.00 0.00 1.82
8838 13714 8.611757 GTTCAAACTGCCAAATTTAAATTCACT 58.388 29.630 13.68 0.00 0.00 3.41
8840 13716 7.768120 TCAAACTGCCAAATTTAAATTCACTGT 59.232 29.630 13.68 12.20 0.00 3.55
8841 13717 8.397148 CAAACTGCCAAATTTAAATTCACTGTT 58.603 29.630 13.68 16.21 0.00 3.16
8869 13873 7.781056 ACAAGGTTCAAGTTCAACATAAACAT 58.219 30.769 0.00 0.00 0.00 2.71
8880 13884 8.691797 AGTTCAACATAAACATGTGTAAAGGTT 58.308 29.630 0.00 2.32 34.56 3.50
8881 13885 8.751335 GTTCAACATAAACATGTGTAAAGGTTG 58.249 33.333 21.22 21.22 36.64 3.77
8887 13891 9.474920 CATAAACATGTGTAAAGGTTGAAATGT 57.525 29.630 0.00 0.00 0.00 2.71
8919 13923 0.179171 GACGACCACGATGACACGAT 60.179 55.000 0.00 0.00 42.66 3.73
8930 13934 6.640907 CCACGATGACACGATCTAATGATAAA 59.359 38.462 0.00 0.00 37.03 1.40
8942 13946 5.683681 TCTAATGATAAAGCAGTGGCATGA 58.316 37.500 0.00 0.00 44.61 3.07
8943 13947 4.644103 AATGATAAAGCAGTGGCATGAC 57.356 40.909 0.00 0.00 44.61 3.06
8944 13948 3.070476 TGATAAAGCAGTGGCATGACA 57.930 42.857 0.00 0.00 44.61 3.58
8945 13949 3.623703 TGATAAAGCAGTGGCATGACAT 58.376 40.909 3.50 0.00 44.61 3.06
8946 13950 4.779696 TGATAAAGCAGTGGCATGACATA 58.220 39.130 3.50 0.00 44.61 2.29
8947 13951 4.818005 TGATAAAGCAGTGGCATGACATAG 59.182 41.667 3.50 0.85 44.61 2.23
8948 13952 2.048444 AAGCAGTGGCATGACATAGG 57.952 50.000 3.50 0.00 44.61 2.57
8949 13953 1.206878 AGCAGTGGCATGACATAGGA 58.793 50.000 3.50 0.00 44.61 2.94
8950 13954 1.140452 AGCAGTGGCATGACATAGGAG 59.860 52.381 3.50 0.00 44.61 3.69
8951 13955 1.139654 GCAGTGGCATGACATAGGAGA 59.860 52.381 3.50 0.00 40.72 3.71
8952 13956 2.806019 GCAGTGGCATGACATAGGAGAG 60.806 54.545 3.50 0.00 40.72 3.20
8953 13957 2.045524 AGTGGCATGACATAGGAGAGG 58.954 52.381 3.50 0.00 0.00 3.69
8954 13958 1.071385 GTGGCATGACATAGGAGAGGG 59.929 57.143 3.50 0.00 0.00 4.30
8955 13959 0.036022 GGCATGACATAGGAGAGGGC 59.964 60.000 0.00 0.00 0.00 5.19
8956 13960 0.761187 GCATGACATAGGAGAGGGCA 59.239 55.000 0.00 0.00 0.00 5.36
8957 13961 1.542108 GCATGACATAGGAGAGGGCAC 60.542 57.143 0.00 0.00 0.00 5.01
8958 13962 2.045524 CATGACATAGGAGAGGGCACT 58.954 52.381 0.00 0.00 0.00 4.40
8959 13963 3.234353 CATGACATAGGAGAGGGCACTA 58.766 50.000 0.00 0.00 0.00 2.74
8960 13964 3.619900 TGACATAGGAGAGGGCACTAT 57.380 47.619 0.00 0.00 0.00 2.12
8961 13965 3.234353 TGACATAGGAGAGGGCACTATG 58.766 50.000 0.00 8.82 45.88 2.23
8963 13967 3.674528 CATAGGAGAGGGCACTATGTG 57.325 52.381 0.00 0.00 39.29 3.21
8964 13968 3.234353 CATAGGAGAGGGCACTATGTGA 58.766 50.000 0.00 0.00 39.29 3.58
8965 13969 2.254152 AGGAGAGGGCACTATGTGAA 57.746 50.000 0.00 0.00 35.23 3.18
8966 13970 1.834263 AGGAGAGGGCACTATGTGAAC 59.166 52.381 0.00 0.00 35.23 3.18
8967 13971 1.134371 GGAGAGGGCACTATGTGAACC 60.134 57.143 0.00 3.25 35.23 3.62
8968 13972 0.912486 AGAGGGCACTATGTGAACCC 59.088 55.000 0.00 3.89 36.51 4.11
8969 13973 0.618458 GAGGGCACTATGTGAACCCA 59.382 55.000 13.27 0.00 38.00 4.51
8970 13974 1.212935 GAGGGCACTATGTGAACCCAT 59.787 52.381 13.27 0.00 38.00 4.00
8971 13975 1.640670 AGGGCACTATGTGAACCCATT 59.359 47.619 13.27 0.00 38.00 3.16
8972 13976 1.750778 GGGCACTATGTGAACCCATTG 59.249 52.381 1.52 0.00 36.36 2.82
8973 13977 1.750778 GGCACTATGTGAACCCATTGG 59.249 52.381 1.52 0.00 35.23 3.16
8974 13978 1.134946 GCACTATGTGAACCCATTGGC 59.865 52.381 0.00 0.00 35.23 4.52
8975 13979 2.445427 CACTATGTGAACCCATTGGCA 58.555 47.619 0.00 0.00 35.23 4.92
8976 13980 3.025978 CACTATGTGAACCCATTGGCAT 58.974 45.455 0.00 0.00 35.23 4.40
8977 13981 4.206375 CACTATGTGAACCCATTGGCATA 58.794 43.478 0.00 0.00 35.23 3.14
8978 13982 4.828939 CACTATGTGAACCCATTGGCATAT 59.171 41.667 0.00 0.00 35.23 1.78
8979 13983 4.828939 ACTATGTGAACCCATTGGCATATG 59.171 41.667 0.00 0.00 33.59 1.78
8980 13984 1.755959 TGTGAACCCATTGGCATATGC 59.244 47.619 19.79 19.79 41.14 3.14
8981 13985 1.755959 GTGAACCCATTGGCATATGCA 59.244 47.619 28.07 10.14 44.36 3.96
8982 13986 1.755959 TGAACCCATTGGCATATGCAC 59.244 47.619 28.07 17.68 44.36 4.57
8983 13987 1.069049 GAACCCATTGGCATATGCACC 59.931 52.381 28.07 13.03 44.36 5.01
8984 13988 0.760189 ACCCATTGGCATATGCACCC 60.760 55.000 28.07 12.31 44.36 4.61
8985 13989 0.759812 CCCATTGGCATATGCACCCA 60.760 55.000 28.07 14.79 44.36 4.51
8986 13990 0.390124 CCATTGGCATATGCACCCAC 59.610 55.000 28.07 11.58 44.36 4.61
8987 13991 1.405872 CATTGGCATATGCACCCACT 58.594 50.000 28.07 9.42 44.36 4.00
8988 13992 1.758280 CATTGGCATATGCACCCACTT 59.242 47.619 28.07 5.78 44.36 3.16
8989 13993 1.935799 TTGGCATATGCACCCACTTT 58.064 45.000 28.07 0.00 44.36 2.66
8990 13994 1.935799 TGGCATATGCACCCACTTTT 58.064 45.000 28.07 0.00 44.36 2.27
8991 13995 1.549620 TGGCATATGCACCCACTTTTG 59.450 47.619 28.07 0.00 44.36 2.44
8992 13996 1.824230 GGCATATGCACCCACTTTTGA 59.176 47.619 28.07 0.00 44.36 2.69
8993 13997 2.233431 GGCATATGCACCCACTTTTGAA 59.767 45.455 28.07 0.00 44.36 2.69
8994 13998 3.306641 GGCATATGCACCCACTTTTGAAA 60.307 43.478 28.07 0.00 44.36 2.69
8995 13999 4.314121 GCATATGCACCCACTTTTGAAAA 58.686 39.130 22.84 0.00 41.59 2.29
8996 14000 4.754114 GCATATGCACCCACTTTTGAAAAA 59.246 37.500 22.84 0.00 41.59 1.94
8997 14001 5.412286 GCATATGCACCCACTTTTGAAAAAT 59.588 36.000 22.84 0.00 41.59 1.82
8998 14002 6.621164 GCATATGCACCCACTTTTGAAAAATG 60.621 38.462 22.84 0.00 41.59 2.32
8999 14003 2.941720 TGCACCCACTTTTGAAAAATGC 59.058 40.909 0.00 4.77 32.45 3.56
9000 14004 2.941720 GCACCCACTTTTGAAAAATGCA 59.058 40.909 0.00 0.00 32.23 3.96
9001 14005 3.565063 GCACCCACTTTTGAAAAATGCAT 59.435 39.130 0.00 0.00 32.23 3.96
9002 14006 4.036616 GCACCCACTTTTGAAAAATGCATT 59.963 37.500 5.99 5.99 32.23 3.56
9003 14007 5.450274 GCACCCACTTTTGAAAAATGCATTT 60.450 36.000 18.99 18.99 32.23 2.32
9004 14008 6.562518 CACCCACTTTTGAAAAATGCATTTT 58.437 32.000 27.73 27.73 43.85 1.82
9005 14009 7.680588 GCACCCACTTTTGAAAAATGCATTTTA 60.681 33.333 31.87 18.29 41.27 1.52
9006 14010 8.186821 CACCCACTTTTGAAAAATGCATTTTAA 58.813 29.630 31.87 22.35 41.27 1.52
9007 14011 8.404765 ACCCACTTTTGAAAAATGCATTTTAAG 58.595 29.630 31.87 29.53 41.27 1.85
9008 14012 7.379262 CCCACTTTTGAAAAATGCATTTTAAGC 59.621 33.333 31.87 24.08 41.27 3.09
9009 14013 8.130469 CCACTTTTGAAAAATGCATTTTAAGCT 58.870 29.630 31.87 19.54 41.27 3.74
9048 14052 9.853555 AATTCAAAAGAAAATATCACGCATACA 57.146 25.926 0.00 0.00 0.00 2.29
9050 14054 8.839947 TCAAAAGAAAATATCACGCATACATG 57.160 30.769 0.00 0.00 0.00 3.21
9051 14055 8.458052 TCAAAAGAAAATATCACGCATACATGT 58.542 29.630 2.69 2.69 0.00 3.21
9052 14056 9.075519 CAAAAGAAAATATCACGCATACATGTT 57.924 29.630 2.30 0.00 0.00 2.71
9053 14057 8.841444 AAAGAAAATATCACGCATACATGTTC 57.159 30.769 2.30 0.00 0.00 3.18
9054 14058 6.649436 AGAAAATATCACGCATACATGTTCG 58.351 36.000 2.30 8.45 0.00 3.95
9055 14059 4.389664 AATATCACGCATACATGTTCGC 57.610 40.909 2.30 6.37 0.00 4.70
9056 14060 1.650825 ATCACGCATACATGTTCGCA 58.349 45.000 2.30 0.00 0.00 5.10
9057 14061 1.433534 TCACGCATACATGTTCGCAA 58.566 45.000 2.30 0.00 0.00 4.85
9058 14062 2.006169 TCACGCATACATGTTCGCAAT 58.994 42.857 2.30 0.00 0.00 3.56
9059 14063 2.418280 TCACGCATACATGTTCGCAATT 59.582 40.909 2.30 0.00 0.00 2.32
9060 14064 2.527087 CACGCATACATGTTCGCAATTG 59.473 45.455 2.30 0.00 0.00 2.32
9061 14065 1.513994 CGCATACATGTTCGCAATTGC 59.486 47.619 20.76 20.76 37.78 3.56
9085 14089 7.175995 CGTATACGCAACACAAAGTTTTATG 57.824 36.000 13.08 0.00 38.74 1.90
9086 14090 7.010606 CGTATACGCAACACAAAGTTTTATGA 58.989 34.615 13.08 0.00 38.74 2.15
9087 14091 7.531198 CGTATACGCAACACAAAGTTTTATGAA 59.469 33.333 13.08 0.00 38.74 2.57
9088 14092 9.171701 GTATACGCAACACAAAGTTTTATGAAA 57.828 29.630 4.06 0.00 38.74 2.69
9089 14093 6.952935 ACGCAACACAAAGTTTTATGAAAA 57.047 29.167 4.06 0.00 38.74 2.29
9090 14094 7.352719 ACGCAACACAAAGTTTTATGAAAAA 57.647 28.000 4.06 0.00 38.74 1.94
9113 14117 7.770801 AAATGTCTTTTTGTTTTACCTCTGC 57.229 32.000 0.00 0.00 0.00 4.26
9114 14118 5.906113 TGTCTTTTTGTTTTACCTCTGCA 57.094 34.783 0.00 0.00 0.00 4.41
9115 14119 6.274157 TGTCTTTTTGTTTTACCTCTGCAA 57.726 33.333 0.00 0.00 0.00 4.08
9116 14120 6.692486 TGTCTTTTTGTTTTACCTCTGCAAA 58.308 32.000 0.00 0.00 0.00 3.68
9117 14121 7.155328 TGTCTTTTTGTTTTACCTCTGCAAAA 58.845 30.769 0.00 0.00 37.29 2.44
9118 14122 7.657761 TGTCTTTTTGTTTTACCTCTGCAAAAA 59.342 29.630 11.32 11.32 42.75 1.94
9141 14145 9.974980 AAAAAGATAAATTTCGGTGCTTCTAAA 57.025 25.926 0.00 0.00 0.00 1.85
9145 14149 9.614792 AGATAAATTTCGGTGCTTCTAAATAGT 57.385 29.630 0.00 0.00 0.00 2.12
9146 14150 9.651718 GATAAATTTCGGTGCTTCTAAATAGTG 57.348 33.333 0.00 0.00 0.00 2.74
9147 14151 7.448748 AAATTTCGGTGCTTCTAAATAGTGT 57.551 32.000 0.00 0.00 0.00 3.55
9148 14152 7.448748 AATTTCGGTGCTTCTAAATAGTGTT 57.551 32.000 0.00 0.00 0.00 3.32
9149 14153 6.870971 TTTCGGTGCTTCTAAATAGTGTTT 57.129 33.333 0.00 0.00 0.00 2.83
9150 14154 6.476243 TTCGGTGCTTCTAAATAGTGTTTC 57.524 37.500 0.00 0.00 0.00 2.78
9151 14155 5.543714 TCGGTGCTTCTAAATAGTGTTTCA 58.456 37.500 0.00 0.00 0.00 2.69
9152 14156 6.170506 TCGGTGCTTCTAAATAGTGTTTCAT 58.829 36.000 0.00 0.00 0.00 2.57
9153 14157 6.092122 TCGGTGCTTCTAAATAGTGTTTCATG 59.908 38.462 0.00 0.00 0.00 3.07
9154 14158 6.092122 CGGTGCTTCTAAATAGTGTTTCATGA 59.908 38.462 0.00 0.00 0.00 3.07
9155 14159 7.244192 GGTGCTTCTAAATAGTGTTTCATGAC 58.756 38.462 0.00 0.00 0.00 3.06
9156 14160 7.094805 GGTGCTTCTAAATAGTGTTTCATGACA 60.095 37.037 0.00 0.00 0.00 3.58
9157 14161 8.454106 GTGCTTCTAAATAGTGTTTCATGACAT 58.546 33.333 0.00 0.00 0.00 3.06
9158 14162 9.665719 TGCTTCTAAATAGTGTTTCATGACATA 57.334 29.630 0.00 0.00 0.00 2.29
9189 14193 2.479566 TTTTTGCACAGGCCACAAAA 57.520 40.000 17.01 17.01 40.47 2.44
9190 14194 2.479566 TTTTGCACAGGCCACAAAAA 57.520 40.000 18.05 9.53 39.57 1.94
9217 14221 9.482627 AAATATTTTTCCGTGAAACTTTATGCA 57.517 25.926 0.00 0.00 30.83 3.96
9218 14222 6.763303 ATTTTTCCGTGAAACTTTATGCAC 57.237 33.333 0.00 0.00 30.83 4.57
9221 14225 2.308347 CGTGAAACTTTATGCACGCA 57.692 45.000 0.00 0.00 45.81 5.24
9222 14226 1.969256 CGTGAAACTTTATGCACGCAC 59.031 47.619 0.00 0.00 45.81 5.34
9223 14227 2.601029 CGTGAAACTTTATGCACGCACA 60.601 45.455 0.00 0.00 45.81 4.57
9224 14228 3.564511 GTGAAACTTTATGCACGCACAT 58.435 40.909 0.00 0.00 0.00 3.21
9225 14229 4.667922 CGTGAAACTTTATGCACGCACATA 60.668 41.667 0.00 0.00 45.81 2.29
9226 14230 4.788100 GTGAAACTTTATGCACGCACATAG 59.212 41.667 0.00 0.00 34.15 2.23
9227 14231 4.693095 TGAAACTTTATGCACGCACATAGA 59.307 37.500 0.00 0.00 34.15 1.98
9228 14232 5.180304 TGAAACTTTATGCACGCACATAGAA 59.820 36.000 0.00 0.00 34.15 2.10
9229 14233 4.600012 ACTTTATGCACGCACATAGAAC 57.400 40.909 0.00 0.00 34.15 3.01
9230 14234 4.000325 ACTTTATGCACGCACATAGAACA 59.000 39.130 0.00 0.00 34.15 3.18
9231 14235 4.635765 ACTTTATGCACGCACATAGAACAT 59.364 37.500 0.00 0.00 34.15 2.71
9232 14236 4.534794 TTATGCACGCACATAGAACATG 57.465 40.909 0.00 0.00 34.15 3.21
9233 14237 1.085893 TGCACGCACATAGAACATGG 58.914 50.000 0.00 0.00 0.00 3.66
9234 14238 1.338579 TGCACGCACATAGAACATGGA 60.339 47.619 0.00 0.00 0.00 3.41
9235 14239 1.328680 GCACGCACATAGAACATGGAG 59.671 52.381 0.00 0.00 0.00 3.86
9236 14240 2.892374 CACGCACATAGAACATGGAGA 58.108 47.619 0.00 0.00 0.00 3.71
9237 14241 2.604914 CACGCACATAGAACATGGAGAC 59.395 50.000 0.00 0.00 0.00 3.36
9238 14242 1.854743 CGCACATAGAACATGGAGACG 59.145 52.381 0.00 0.00 0.00 4.18
9239 14243 2.479560 CGCACATAGAACATGGAGACGA 60.480 50.000 0.00 0.00 0.00 4.20
9240 14244 3.521560 GCACATAGAACATGGAGACGAA 58.478 45.455 0.00 0.00 0.00 3.85
9241 14245 3.307242 GCACATAGAACATGGAGACGAAC 59.693 47.826 0.00 0.00 0.00 3.95
9242 14246 3.865745 CACATAGAACATGGAGACGAACC 59.134 47.826 0.00 0.00 0.00 3.62
9243 14247 3.118738 ACATAGAACATGGAGACGAACCC 60.119 47.826 0.00 0.00 0.00 4.11
9244 14248 0.246635 AGAACATGGAGACGAACCCG 59.753 55.000 0.00 0.00 42.50 5.28
9245 14249 1.359459 GAACATGGAGACGAACCCGC 61.359 60.000 0.00 0.00 39.95 6.13
9246 14250 2.885644 CATGGAGACGAACCCGCG 60.886 66.667 0.00 0.00 39.95 6.46
9248 14252 2.048023 ATGGAGACGAACCCGCGTA 61.048 57.895 4.92 0.00 45.72 4.42
9249 14253 1.597797 ATGGAGACGAACCCGCGTAA 61.598 55.000 4.92 0.00 45.72 3.18
9250 14254 1.140375 GGAGACGAACCCGCGTAAT 59.860 57.895 4.92 0.00 45.72 1.89
9251 14255 0.459063 GGAGACGAACCCGCGTAATT 60.459 55.000 4.92 0.00 45.72 1.40
9252 14256 1.353076 GAGACGAACCCGCGTAATTT 58.647 50.000 4.92 0.00 45.72 1.82
9253 14257 1.728425 GAGACGAACCCGCGTAATTTT 59.272 47.619 4.92 0.00 45.72 1.82
9254 14258 2.145536 AGACGAACCCGCGTAATTTTT 58.854 42.857 4.92 0.00 45.72 1.94
9299 14303 8.443953 TTTAGAAATGTGTTTTCCAAAATGGG 57.556 30.769 0.00 0.00 44.06 4.00
9300 14304 6.000246 AGAAATGTGTTTTCCAAAATGGGT 58.000 33.333 0.00 0.00 44.06 4.51
9301 14305 6.422333 AGAAATGTGTTTTCCAAAATGGGTT 58.578 32.000 0.00 0.00 44.06 4.11
9302 14306 6.542005 AGAAATGTGTTTTCCAAAATGGGTTC 59.458 34.615 0.00 0.00 44.06 3.62
9303 14307 4.826274 TGTGTTTTCCAAAATGGGTTCA 57.174 36.364 0.00 0.00 38.32 3.18
9304 14308 5.365021 TGTGTTTTCCAAAATGGGTTCAT 57.635 34.783 0.00 0.00 38.32 2.57
9305 14309 6.485830 TGTGTTTTCCAAAATGGGTTCATA 57.514 33.333 0.00 0.00 38.32 2.15
9306 14310 7.072263 TGTGTTTTCCAAAATGGGTTCATAT 57.928 32.000 0.00 0.00 38.32 1.78
9307 14311 6.933521 TGTGTTTTCCAAAATGGGTTCATATG 59.066 34.615 0.00 0.00 38.32 1.78
9308 14312 6.934083 GTGTTTTCCAAAATGGGTTCATATGT 59.066 34.615 1.90 0.00 38.32 2.29
9309 14313 7.117667 GTGTTTTCCAAAATGGGTTCATATGTC 59.882 37.037 1.90 0.00 38.32 3.06
9310 14314 5.930837 TTCCAAAATGGGTTCATATGTCC 57.069 39.130 1.90 6.85 38.32 4.02
9311 14315 4.285863 TCCAAAATGGGTTCATATGTCCC 58.714 43.478 22.62 22.62 38.32 4.46
9312 14316 3.068024 CCAAAATGGGTTCATATGTCCCG 59.932 47.826 23.25 14.03 43.75 5.14
9313 14317 2.656947 AATGGGTTCATATGTCCCGG 57.343 50.000 23.25 0.00 43.75 5.73
9314 14318 1.814429 ATGGGTTCATATGTCCCGGA 58.186 50.000 23.25 13.68 43.75 5.14
9315 14319 1.814429 TGGGTTCATATGTCCCGGAT 58.186 50.000 23.25 0.00 43.75 4.18
9316 14320 2.131854 TGGGTTCATATGTCCCGGATT 58.868 47.619 23.25 0.00 43.75 3.01
9317 14321 2.512056 TGGGTTCATATGTCCCGGATTT 59.488 45.455 23.25 0.00 43.75 2.17
9318 14322 3.717392 TGGGTTCATATGTCCCGGATTTA 59.283 43.478 23.25 10.20 43.75 1.40
9319 14323 4.352595 TGGGTTCATATGTCCCGGATTTAT 59.647 41.667 23.25 0.00 43.75 1.40
9320 14324 4.941873 GGGTTCATATGTCCCGGATTTATC 59.058 45.833 17.85 0.00 0.00 1.75
9321 14325 4.941873 GGTTCATATGTCCCGGATTTATCC 59.058 45.833 0.73 0.00 43.65 2.59
9334 14338 4.464008 GGATTTATCCATGCACTTCTCCA 58.536 43.478 3.87 0.00 46.38 3.86
9335 14339 5.075493 GGATTTATCCATGCACTTCTCCAT 58.925 41.667 3.87 0.00 46.38 3.41
9336 14340 5.048224 GGATTTATCCATGCACTTCTCCATG 60.048 44.000 3.87 0.00 46.38 3.66
9337 14341 4.776435 TTATCCATGCACTTCTCCATGA 57.224 40.909 0.00 0.00 40.92 3.07
9380 14387 2.107366 GGAGGAAGAGGAGTCTGAAGG 58.893 57.143 0.00 0.00 31.37 3.46
9403 14414 6.220930 GGTATCGACCTTGCATTCAGTATTA 58.779 40.000 0.00 0.00 43.16 0.98
9404 14415 6.145696 GGTATCGACCTTGCATTCAGTATTAC 59.854 42.308 0.00 0.00 43.16 1.89
9474 14485 2.281692 TGCAGCGCATGAACTGGT 60.282 55.556 11.47 0.00 31.71 4.00
9492 14503 3.164268 TGGTCAGCTTGGCAAAATATGT 58.836 40.909 0.00 0.00 0.00 2.29
9515 14527 3.655615 AACCGGGCATTTGGTTAGATA 57.344 42.857 6.32 0.00 46.34 1.98
9518 14530 4.142038 ACCGGGCATTTGGTTAGATAATC 58.858 43.478 6.32 0.00 33.81 1.75
9531 14561 5.791141 GGTTAGATAATCCCCCTCCTTGTAT 59.209 44.000 0.00 0.00 0.00 2.29
9538 14568 2.201830 CCCCCTCCTTGTATTGTACCA 58.798 52.381 0.00 0.00 0.00 3.25
9539 14569 2.783510 CCCCCTCCTTGTATTGTACCAT 59.216 50.000 0.00 0.00 0.00 3.55
9540 14570 3.181443 CCCCCTCCTTGTATTGTACCATC 60.181 52.174 0.00 0.00 0.00 3.51
9542 14572 4.166144 CCCCTCCTTGTATTGTACCATCTT 59.834 45.833 0.00 0.00 0.00 2.40
9544 14574 6.187682 CCCTCCTTGTATTGTACCATCTTTT 58.812 40.000 0.00 0.00 0.00 2.27
9548 14578 9.319143 CTCCTTGTATTGTACCATCTTTTCTAG 57.681 37.037 0.00 0.00 0.00 2.43
9568 14598 8.840200 TTCTAGAAGATGTTACCCTGATTAGT 57.160 34.615 0.00 0.00 0.00 2.24
9569 14599 8.840200 TCTAGAAGATGTTACCCTGATTAGTT 57.160 34.615 0.00 0.00 0.00 2.24
9618 14648 3.363341 AAAAATGTAACGTGGCAGGTG 57.637 42.857 14.26 0.00 0.00 4.00
9619 14649 1.975660 AAATGTAACGTGGCAGGTGT 58.024 45.000 14.26 6.89 0.00 4.16
9620 14650 1.234821 AATGTAACGTGGCAGGTGTG 58.765 50.000 14.26 0.00 0.00 3.82
9631 14661 3.384816 CAGGTGTGCACTGAGTTCA 57.615 52.632 19.41 0.00 38.20 3.18
9632 14662 0.940126 CAGGTGTGCACTGAGTTCAC 59.060 55.000 19.41 8.44 38.20 3.18
9633 14663 0.541392 AGGTGTGCACTGAGTTCACA 59.459 50.000 19.41 13.86 37.35 3.58
9634 14664 0.940126 GGTGTGCACTGAGTTCACAG 59.060 55.000 17.93 0.00 39.92 3.66
9670 14700 7.518731 TTTTGAGAAACAAATGCACACTTAC 57.481 32.000 0.00 0.00 45.99 2.34
9671 14701 5.181690 TGAGAAACAAATGCACACTTACC 57.818 39.130 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.339093 ACTGCCTGGCCTAACCCC 61.339 66.667 17.53 0.00 37.83 4.95
73 74 2.409870 GCGTCCCTTTCATGGCCTG 61.410 63.158 3.32 0.00 0.00 4.85
79 80 1.789576 AACCCAGGCGTCCCTTTCAT 61.790 55.000 0.00 0.00 40.33 2.57
80 81 2.457323 AACCCAGGCGTCCCTTTCA 61.457 57.895 0.00 0.00 40.33 2.69
81 82 1.971695 CAACCCAGGCGTCCCTTTC 60.972 63.158 0.00 0.00 40.33 2.62
82 83 1.420532 TACAACCCAGGCGTCCCTTT 61.421 55.000 0.00 0.00 40.33 3.11
85 86 2.267961 CTACAACCCAGGCGTCCC 59.732 66.667 0.00 0.00 0.00 4.46
92 94 3.861276 TCGTGTATGTCTACAACCCAG 57.139 47.619 0.00 0.00 39.51 4.45
110 112 5.982516 AGCTCTGCTAAATAACTCAAGATCG 59.017 40.000 0.00 0.00 36.99 3.69
130 132 7.891183 TTTGATAAGAAGTACAACAGAGCTC 57.109 36.000 5.27 5.27 0.00 4.09
134 137 7.334421 GGCTGATTTGATAAGAAGTACAACAGA 59.666 37.037 0.00 0.00 0.00 3.41
146 149 4.818546 AGATTGACGGGCTGATTTGATAAG 59.181 41.667 0.00 0.00 0.00 1.73
185 188 0.607489 CTGGTCTGGGTCAAAGGCAG 60.607 60.000 0.00 0.00 0.00 4.85
188 191 1.912043 AGATCTGGTCTGGGTCAAAGG 59.088 52.381 0.00 0.00 35.31 3.11
193 196 2.569404 AGTTGAAGATCTGGTCTGGGTC 59.431 50.000 0.00 0.00 37.23 4.46
194 197 2.625639 AGTTGAAGATCTGGTCTGGGT 58.374 47.619 0.00 0.00 37.23 4.51
202 205 6.147821 ACGGATGTTGTTTAGTTGAAGATCTG 59.852 38.462 0.00 0.00 33.85 2.90
209 212 5.527951 TGCTTTACGGATGTTGTTTAGTTGA 59.472 36.000 0.00 0.00 0.00 3.18
210 213 5.753744 TGCTTTACGGATGTTGTTTAGTTG 58.246 37.500 0.00 0.00 0.00 3.16
214 217 4.380023 GGCATGCTTTACGGATGTTGTTTA 60.380 41.667 18.92 0.00 42.79 2.01
261 265 1.071128 GATGCCTGGCAGCCTAGAG 59.929 63.158 25.76 1.00 43.65 2.43
264 268 0.259647 AAATGATGCCTGGCAGCCTA 59.740 50.000 31.67 16.56 44.94 3.93
281 288 1.477553 GCATCATGCCTGGGAGAAAA 58.522 50.000 0.00 0.00 37.42 2.29
292 299 1.395635 TGATGTCTTGGGCATCATGC 58.604 50.000 10.25 0.00 45.18 4.06
397 404 3.004734 ACTTCAAATTGTGCTTCGGAAGG 59.995 43.478 18.73 1.84 35.72 3.46
403 410 8.321005 GTGTTTTTCTACTTCAAATTGTGCTTC 58.679 33.333 0.00 0.00 0.00 3.86
416 423 5.569413 CGAGCACAAAGTGTTTTTCTACTT 58.431 37.500 0.00 0.00 38.70 2.24
421 428 2.525055 TGCGAGCACAAAGTGTTTTTC 58.475 42.857 0.00 0.00 35.75 2.29
430 437 2.334946 GCCAGGATGCGAGCACAAA 61.335 57.895 0.00 0.00 31.97 2.83
445 452 1.765074 GTCACTGGGTTAAGGGCCA 59.235 57.895 6.18 0.00 0.00 5.36
483 490 2.647299 TGGCTCAATTGAGGGTTCCTAA 59.353 45.455 31.41 10.63 42.29 2.69
484 491 2.274542 TGGCTCAATTGAGGGTTCCTA 58.725 47.619 31.41 13.39 42.29 2.94
495 502 4.623863 AGGGTTATTGGATTGGCTCAATT 58.376 39.130 2.53 0.00 33.90 2.32
512 519 4.022329 CGAAGGATGTTAAAGCAAAGGGTT 60.022 41.667 0.00 0.00 35.98 4.11
635 673 9.716507 GTATAAACAATCAGCACGATGTATTTT 57.283 29.630 0.00 0.00 33.40 1.82
674 712 9.857656 ACTGATGACTGATAAAATACAATCCAT 57.142 29.630 0.00 0.00 0.00 3.41
686 725 6.573434 ACGAAGCATTACTGATGACTGATAA 58.427 36.000 0.00 0.00 38.03 1.75
718 757 6.212589 TGGACCGGCATATCATCTTAAGATTA 59.787 38.462 15.49 8.53 31.21 1.75
721 760 3.901222 TGGACCGGCATATCATCTTAAGA 59.099 43.478 7.82 7.82 0.00 2.10
727 766 1.620819 AGACTGGACCGGCATATCATC 59.379 52.381 0.00 0.00 0.00 2.92
740 779 2.305052 TGAGTACCTTCGAGAGACTGGA 59.695 50.000 0.00 0.00 41.84 3.86
757 796 5.163405 ACACGCACATCCTATCTTTATGAGT 60.163 40.000 0.00 0.00 0.00 3.41
764 803 3.733988 CGTACACACGCACATCCTATCTT 60.734 47.826 0.00 0.00 42.05 2.40
765 804 2.223502 CGTACACACGCACATCCTATCT 60.224 50.000 0.00 0.00 42.05 1.98
767 806 2.203800 CGTACACACGCACATCCTAT 57.796 50.000 0.00 0.00 42.05 2.57
774 813 7.395595 CATTCCTATGAACGTACACACGCAC 62.396 48.000 0.00 0.00 41.97 5.34
794 833 9.831054 GCTTATACATACGCGTATTATTCATTC 57.169 33.333 28.35 11.08 34.03 2.67
847 887 9.672086 CGTTCCAAAACAGATGAATACTTTTTA 57.328 29.630 0.00 0.00 34.93 1.52
853 893 5.163754 CCTCCGTTCCAAAACAGATGAATAC 60.164 44.000 0.00 0.00 34.93 1.89
854 894 4.941263 CCTCCGTTCCAAAACAGATGAATA 59.059 41.667 0.00 0.00 34.93 1.75
855 895 3.758554 CCTCCGTTCCAAAACAGATGAAT 59.241 43.478 0.00 0.00 34.93 2.57
856 896 3.146066 CCTCCGTTCCAAAACAGATGAA 58.854 45.455 0.00 0.00 34.93 2.57
857 897 2.552155 CCCTCCGTTCCAAAACAGATGA 60.552 50.000 0.00 0.00 34.93 2.92
858 898 1.812571 CCCTCCGTTCCAAAACAGATG 59.187 52.381 0.00 0.00 34.93 2.90
859 899 1.702957 TCCCTCCGTTCCAAAACAGAT 59.297 47.619 0.00 0.00 34.93 2.90
860 900 1.071699 CTCCCTCCGTTCCAAAACAGA 59.928 52.381 0.00 0.00 34.93 3.41
861 901 1.202770 ACTCCCTCCGTTCCAAAACAG 60.203 52.381 0.00 0.00 34.93 3.16
862 902 0.841289 ACTCCCTCCGTTCCAAAACA 59.159 50.000 0.00 0.00 34.93 2.83
863 903 2.845363 TACTCCCTCCGTTCCAAAAC 57.155 50.000 0.00 0.00 0.00 2.43
864 904 3.681593 CATTACTCCCTCCGTTCCAAAA 58.318 45.455 0.00 0.00 0.00 2.44
865 905 2.617021 GCATTACTCCCTCCGTTCCAAA 60.617 50.000 0.00 0.00 0.00 3.28
866 906 1.065709 GCATTACTCCCTCCGTTCCAA 60.066 52.381 0.00 0.00 0.00 3.53
867 907 0.539986 GCATTACTCCCTCCGTTCCA 59.460 55.000 0.00 0.00 0.00 3.53
868 908 0.831307 AGCATTACTCCCTCCGTTCC 59.169 55.000 0.00 0.00 0.00 3.62
869 909 2.678336 CAAAGCATTACTCCCTCCGTTC 59.322 50.000 0.00 0.00 0.00 3.95
870 910 2.039879 ACAAAGCATTACTCCCTCCGTT 59.960 45.455 0.00 0.00 0.00 4.44
871 911 1.628846 ACAAAGCATTACTCCCTCCGT 59.371 47.619 0.00 0.00 0.00 4.69
872 912 2.403252 ACAAAGCATTACTCCCTCCG 57.597 50.000 0.00 0.00 0.00 4.63
873 913 4.137543 CCATACAAAGCATTACTCCCTCC 58.862 47.826 0.00 0.00 0.00 4.30
874 914 4.137543 CCCATACAAAGCATTACTCCCTC 58.862 47.826 0.00 0.00 0.00 4.30
875 915 3.785887 TCCCATACAAAGCATTACTCCCT 59.214 43.478 0.00 0.00 0.00 4.20
876 916 4.164843 TCCCATACAAAGCATTACTCCC 57.835 45.455 0.00 0.00 0.00 4.30
877 917 6.524101 TTTTCCCATACAAAGCATTACTCC 57.476 37.500 0.00 0.00 0.00 3.85
878 918 7.826690 TCTTTTTCCCATACAAAGCATTACTC 58.173 34.615 0.00 0.00 0.00 2.59
879 919 7.775053 TCTTTTTCCCATACAAAGCATTACT 57.225 32.000 0.00 0.00 0.00 2.24
880 920 7.063426 GCTTCTTTTTCCCATACAAAGCATTAC 59.937 37.037 0.00 0.00 38.16 1.89
892 932 5.012893 AGATTCTTCGCTTCTTTTTCCCAT 58.987 37.500 0.00 0.00 0.00 4.00
895 935 4.436183 CGGAGATTCTTCGCTTCTTTTTCC 60.436 45.833 0.50 0.00 0.00 3.13
950 997 2.027745 GCCAAGATGGTCTTCTCTCACA 60.028 50.000 0.00 0.00 40.46 3.58
1206 1264 2.599139 TATCAGTACTGCCCGCCCCT 62.599 60.000 18.45 0.00 0.00 4.79
1207 1265 1.481056 ATATCAGTACTGCCCGCCCC 61.481 60.000 18.45 0.00 0.00 5.80
1208 1266 0.037232 GATATCAGTACTGCCCGCCC 60.037 60.000 18.45 1.53 0.00 6.13
1209 1267 0.037232 GGATATCAGTACTGCCCGCC 60.037 60.000 18.45 12.49 0.00 6.13
1210 1268 0.037232 GGGATATCAGTACTGCCCGC 60.037 60.000 18.45 10.57 0.00 6.13
1211 1269 0.608640 GGGGATATCAGTACTGCCCG 59.391 60.000 22.67 1.53 36.41 6.13
1212 1270 1.729586 TGGGGATATCAGTACTGCCC 58.270 55.000 21.91 21.91 34.79 5.36
1226 1289 5.368523 AGAAGATACGGTATCAAATTGGGGA 59.631 40.000 25.48 0.00 37.65 4.81
1269 1332 0.741221 ACAGCCTAAGCAAGCTACGC 60.741 55.000 0.00 0.00 43.56 4.42
1319 1383 1.342074 TGGATGGATGGATCGAGGTC 58.658 55.000 0.00 0.00 0.00 3.85
1520 1588 1.229496 TAGACCCTCAGCCTTGGCA 60.229 57.895 14.54 0.00 0.00 4.92
1693 1765 1.640917 TGGGGTTCAGAGGAGTGTAC 58.359 55.000 0.00 0.00 0.00 2.90
1846 1918 1.689233 AGCGGAGTATTGCTGGGGA 60.689 57.895 0.00 0.00 40.62 4.81
1912 1984 2.890474 GCGGCCATGTACTCCACG 60.890 66.667 2.24 0.00 0.00 4.94
2374 2446 7.041098 ACTGAATTCAAAATAAACTCGCACTCT 60.041 33.333 9.88 0.00 0.00 3.24
2531 2606 2.349275 CCGGCATCAACAAATTGCAATC 59.651 45.455 13.38 0.00 38.12 2.67
2565 2640 7.766278 TCCTTTTGCAGTTCTTCTATAAGCTAG 59.234 37.037 0.00 0.00 32.36 3.42
2643 2718 0.890683 GGCTGGCTGCAACACTTAAT 59.109 50.000 18.32 0.00 45.15 1.40
2852 2937 4.881850 ACTATTGTTGGGAATAGAAAGGCG 59.118 41.667 0.00 0.00 37.91 5.52
2854 2939 8.352942 GCATAACTATTGTTGGGAATAGAAAGG 58.647 37.037 2.59 0.00 37.91 3.11
2874 2959 5.979517 GGAATGCTAAGGAATGTTGCATAAC 59.020 40.000 0.00 0.00 42.57 1.89
2887 2972 0.834612 TACCCCACGGAATGCTAAGG 59.165 55.000 0.00 0.00 0.00 2.69
2896 2981 2.236893 GGTGTTAGAAATACCCCACGGA 59.763 50.000 0.00 0.00 36.74 4.69
2921 3006 0.035439 GAACAGGAGGCGAATTGGGA 60.035 55.000 0.00 0.00 0.00 4.37
3072 3161 8.843262 CATCACATATCAGAAAAGGCTTTCATA 58.157 33.333 13.76 7.92 42.99 2.15
3255 3351 6.705863 ACTTTATCAGAAAAGGGATCATGC 57.294 37.500 0.00 0.00 40.16 4.06
3344 3641 9.161629 CAAAGGAAAACCTAACTTGACAAAAAT 57.838 29.630 0.00 0.00 0.00 1.82
3345 3642 7.604545 CCAAAGGAAAACCTAACTTGACAAAAA 59.395 33.333 0.00 0.00 0.00 1.94
3528 3827 1.462283 CCTTGATGCACGAGTTGACTG 59.538 52.381 0.00 0.00 0.00 3.51
3530 3829 0.798776 CCCTTGATGCACGAGTTGAC 59.201 55.000 0.00 0.00 0.00 3.18
3770 4076 5.664294 AAATGCCTGCACAGATATTTTCA 57.336 34.783 0.00 0.00 0.00 2.69
3786 4092 6.463360 TGGAACTTCCAAGAAAATAAATGCC 58.537 36.000 8.15 0.00 45.00 4.40
3813 4119 6.668541 TCTGAAATAACAGCATCTTACAGC 57.331 37.500 0.00 0.00 37.75 4.40
3823 4129 6.372659 TCCACTCTGAATTCTGAAATAACAGC 59.627 38.462 14.97 0.00 37.75 4.40
3934 4242 2.501723 ACTCACAATAGGTCGCCATTCT 59.498 45.455 0.00 0.00 0.00 2.40
3941 4249 5.345202 GTCAACTAACACTCACAATAGGTCG 59.655 44.000 0.00 0.00 0.00 4.79
3956 4264 8.223769 CACATTATCACTGAGTTGTCAACTAAC 58.776 37.037 18.17 7.74 43.03 2.34
4028 4337 4.023726 TGACACCTAACCGCCTTAAAAT 57.976 40.909 0.00 0.00 0.00 1.82
4045 4354 5.348986 GCTTAGGTTGATCGTCTTATGACA 58.651 41.667 9.22 0.00 43.06 3.58
4104 4413 2.684655 TTAGGGGGTAAGGCGCGT 60.685 61.111 8.43 0.00 0.00 6.01
4241 4551 7.712639 ACATCAGAAGATAACGCATAAGTCAAT 59.287 33.333 0.00 0.00 31.88 2.57
4484 4797 6.029346 AGCAAAGTAGCAATGCAGTTAAAT 57.971 33.333 8.35 0.00 42.45 1.40
4489 4802 3.679389 ACTAGCAAAGTAGCAATGCAGT 58.321 40.909 8.35 0.00 42.45 4.40
4524 4837 2.201732 GCAGTGAAGACGAGACAAACA 58.798 47.619 0.00 0.00 0.00 2.83
4602 4921 2.759355 TCATTCCGGACCTGATACCTT 58.241 47.619 1.83 0.00 0.00 3.50
4603 4922 2.471815 TCATTCCGGACCTGATACCT 57.528 50.000 1.83 0.00 0.00 3.08
4629 4948 0.175073 CTACCCCAACTCTACCACGC 59.825 60.000 0.00 0.00 0.00 5.34
4721 5040 3.323136 GTCCGCTATGCACTCGCG 61.323 66.667 16.37 16.37 45.86 5.87
4764 5083 3.637273 GGTCTGCCACGACCCCTT 61.637 66.667 5.81 0.00 46.19 3.95
4776 5095 4.080356 TCCTCCCATATCAAGTTTGGTCTG 60.080 45.833 0.00 0.00 0.00 3.51
4804 5123 4.022603 CAGTCCCTCAGATCTCTCTTTGA 58.977 47.826 0.00 0.00 0.00 2.69
4883 5202 1.742761 ACCAAGTCATGATTCTGGCG 58.257 50.000 16.51 0.00 0.00 5.69
4891 5210 7.148255 CCATAAAATCTCGAAACCAAGTCATGA 60.148 37.037 0.00 0.00 0.00 3.07
4893 5212 6.095440 CCCATAAAATCTCGAAACCAAGTCAT 59.905 38.462 0.00 0.00 0.00 3.06
4917 5236 2.036733 GGGGTAGGCAAAAGTTGAAACC 59.963 50.000 0.00 0.00 0.00 3.27
4927 5246 2.757894 TTCAAGTTGGGGTAGGCAAA 57.242 45.000 2.34 0.00 0.00 3.68
4929 5248 2.524306 CATTTCAAGTTGGGGTAGGCA 58.476 47.619 2.34 0.00 0.00 4.75
4948 5267 4.084118 GCAAAAACAGACAACAACAAAGCA 60.084 37.500 0.00 0.00 0.00 3.91
5052 5372 4.332428 ACCGGATAGCGCTAAACTTATT 57.668 40.909 22.98 2.04 0.00 1.40
5063 5383 4.023450 TCACTTAATCAGTACCGGATAGCG 60.023 45.833 9.46 0.00 32.76 4.26
5139 5459 7.210174 TGAGGATGATTAGGAAAAGTATCACG 58.790 38.462 0.00 0.00 30.51 4.35
5167 5487 5.128663 ACAGCCATTTCACCTAAAACAAACT 59.871 36.000 0.00 0.00 0.00 2.66
5196 5516 6.767524 TGACATGAACATATTTTACACCCC 57.232 37.500 0.00 0.00 0.00 4.95
5209 5529 4.578871 CAGGTTACTGGATGACATGAACA 58.421 43.478 0.00 0.00 41.13 3.18
5588 5908 8.225603 AGTAGAACAGATTGTTTTGTGATTGT 57.774 30.769 0.00 0.00 41.28 2.71
6241 7945 1.635487 CCATATCCCCATTCGGACCAT 59.365 52.381 0.00 0.00 33.77 3.55
6250 7954 0.329261 CGGTGCATCCATATCCCCAT 59.671 55.000 0.00 0.00 35.57 4.00
6448 8159 7.672983 TTTCTTCACATCCTCAACTAATGAC 57.327 36.000 0.00 0.00 33.47 3.06
6632 11431 6.389278 ACAGTAGGACAGAGGGAGTAGTATAA 59.611 42.308 0.00 0.00 0.00 0.98
6636 11435 2.920941 ACAGTAGGACAGAGGGAGTAGT 59.079 50.000 0.00 0.00 0.00 2.73
7411 12211 5.762711 CGTTATCCCATGGAATATGACAACA 59.237 40.000 15.22 0.00 34.34 3.33
7496 12296 2.103263 GTGTTACCATGGTTTTTGGCCA 59.897 45.455 25.38 0.00 37.81 5.36
7531 12336 2.886523 CAAGAAAGCCAACATGGAGTCA 59.113 45.455 0.00 0.00 40.96 3.41
7613 12431 9.857656 TGGAGCATTGATATTTTCTAGAATTCT 57.142 29.630 13.56 13.56 0.00 2.40
7619 12437 9.688592 GGAAAATGGAGCATTGATATTTTCTAG 57.311 33.333 16.48 0.00 42.74 2.43
7638 12456 6.266330 AGAACCCAAAAGAAGAGAGGAAAATG 59.734 38.462 0.00 0.00 0.00 2.32
7641 12459 5.377478 GAGAACCCAAAAGAAGAGAGGAAA 58.623 41.667 0.00 0.00 0.00 3.13
7644 12462 3.330267 CGAGAACCCAAAAGAAGAGAGG 58.670 50.000 0.00 0.00 0.00 3.69
7645 12463 2.739379 GCGAGAACCCAAAAGAAGAGAG 59.261 50.000 0.00 0.00 0.00 3.20
7646 12464 2.104111 TGCGAGAACCCAAAAGAAGAGA 59.896 45.455 0.00 0.00 0.00 3.10
7648 12466 2.631160 TGCGAGAACCCAAAAGAAGA 57.369 45.000 0.00 0.00 0.00 2.87
7649 12467 2.554032 ACATGCGAGAACCCAAAAGAAG 59.446 45.455 0.00 0.00 0.00 2.85
7681 12513 8.675705 TGAACATCATACAAGGTTATACATGG 57.324 34.615 0.00 0.00 0.00 3.66
7767 12599 0.310854 CCAAACGAGGCACAGGAAAC 59.689 55.000 0.00 0.00 0.00 2.78
7794 12626 7.437713 ACTAACCTGAGAACCATATTGATCA 57.562 36.000 0.00 0.00 0.00 2.92
7875 12707 1.346395 CTACCAAGTACACAGGCACCA 59.654 52.381 0.00 0.00 0.00 4.17
7911 12743 1.967779 TGCTACTGTCACTGCAGGTTA 59.032 47.619 19.93 0.00 40.59 2.85
7935 12767 2.723530 ATCTTATCGGGATCCCCTGT 57.276 50.000 25.73 13.36 42.67 4.00
7966 12798 5.183713 CCTTCCAGTGAGATTGTTGCATTTA 59.816 40.000 0.00 0.00 0.00 1.40
7981 12813 3.803778 GCACAAATTTTGACCTTCCAGTG 59.196 43.478 15.81 1.82 0.00 3.66
8063 12897 6.886459 ACAAATTATGTGGAAGTGCTGATAGT 59.114 34.615 0.00 0.00 41.93 2.12
8289 13123 2.842496 ACATGAGAGAAGAGGCCATTGA 59.158 45.455 5.01 0.00 0.00 2.57
8400 13238 2.436417 ACAGTCCATGGCAATGTACAC 58.564 47.619 6.96 0.00 31.27 2.90
8570 13412 2.681976 GCAGCAACCACACCATCTCTAT 60.682 50.000 0.00 0.00 0.00 1.98
8574 13416 1.968017 CGCAGCAACCACACCATCT 60.968 57.895 0.00 0.00 0.00 2.90
8580 13422 0.963225 TAGTAGACGCAGCAACCACA 59.037 50.000 0.00 0.00 0.00 4.17
8640 13507 8.830915 ATAAACCACCACCATAACATCAATTA 57.169 30.769 0.00 0.00 0.00 1.40
8705 13580 4.910195 AGAACAGCATTCAGGTATTGACA 58.090 39.130 3.83 0.00 34.94 3.58
8762 13637 6.697019 GCAGAGACAAATGCAAAAAGAACTTA 59.303 34.615 0.00 0.00 42.11 2.24
8765 13640 4.085415 CGCAGAGACAAATGCAAAAAGAAC 60.085 41.667 0.00 0.00 42.68 3.01
8838 13714 5.941058 TGTTGAACTTGAACCTTGTCTAACA 59.059 36.000 0.00 0.00 0.00 2.41
8840 13716 8.740123 TTATGTTGAACTTGAACCTTGTCTAA 57.260 30.769 0.00 0.00 0.00 2.10
8841 13717 8.617809 GTTTATGTTGAACTTGAACCTTGTCTA 58.382 33.333 7.38 0.00 0.00 2.59
8869 13873 3.701542 TGCCACATTTCAACCTTTACACA 59.298 39.130 0.00 0.00 0.00 3.72
8880 13884 7.247728 GTCGTCTAAATTTATGCCACATTTCA 58.752 34.615 0.00 0.00 0.00 2.69
8881 13885 6.691388 GGTCGTCTAAATTTATGCCACATTTC 59.309 38.462 0.00 0.00 0.00 2.17
8887 13891 3.619483 CGTGGTCGTCTAAATTTATGCCA 59.381 43.478 0.00 1.21 0.00 4.92
8919 13923 5.528690 GTCATGCCACTGCTTTATCATTAGA 59.471 40.000 0.00 0.00 38.71 2.10
8930 13934 1.140452 CTCCTATGTCATGCCACTGCT 59.860 52.381 0.00 0.00 38.71 4.24
8942 13946 3.336509 ACATAGTGCCCTCTCCTATGT 57.663 47.619 5.87 5.87 43.86 2.29
8943 13947 3.234353 TCACATAGTGCCCTCTCCTATG 58.766 50.000 0.00 0.00 42.31 2.23
8944 13948 3.619900 TCACATAGTGCCCTCTCCTAT 57.380 47.619 0.00 0.00 32.98 2.57
8945 13949 3.031736 GTTCACATAGTGCCCTCTCCTA 58.968 50.000 0.00 0.00 32.98 2.94
8946 13950 1.834263 GTTCACATAGTGCCCTCTCCT 59.166 52.381 0.00 0.00 32.98 3.69
8947 13951 1.134371 GGTTCACATAGTGCCCTCTCC 60.134 57.143 0.00 0.00 32.98 3.71
8948 13952 1.134371 GGGTTCACATAGTGCCCTCTC 60.134 57.143 5.81 0.00 34.46 3.20
8949 13953 0.912486 GGGTTCACATAGTGCCCTCT 59.088 55.000 5.81 0.00 34.46 3.69
8950 13954 0.618458 TGGGTTCACATAGTGCCCTC 59.382 55.000 12.16 0.00 36.97 4.30
8951 13955 1.298953 ATGGGTTCACATAGTGCCCT 58.701 50.000 12.16 0.00 36.97 5.19
8952 13956 1.750778 CAATGGGTTCACATAGTGCCC 59.249 52.381 6.05 6.05 36.70 5.36
8953 13957 1.750778 CCAATGGGTTCACATAGTGCC 59.249 52.381 0.00 0.00 32.98 5.01
8954 13958 1.134946 GCCAATGGGTTCACATAGTGC 59.865 52.381 0.00 0.00 36.17 4.40
8955 13959 2.445427 TGCCAATGGGTTCACATAGTG 58.555 47.619 0.00 0.00 36.17 2.74
8956 13960 2.897271 TGCCAATGGGTTCACATAGT 57.103 45.000 0.00 0.00 36.17 2.12
8957 13961 4.321452 GCATATGCCAATGGGTTCACATAG 60.321 45.833 17.26 0.00 36.17 2.23
8958 13962 3.573538 GCATATGCCAATGGGTTCACATA 59.426 43.478 17.26 0.06 36.17 2.29
8959 13963 2.366266 GCATATGCCAATGGGTTCACAT 59.634 45.455 17.26 0.00 36.17 3.21
8960 13964 1.755959 GCATATGCCAATGGGTTCACA 59.244 47.619 17.26 0.00 36.17 3.58
8961 13965 1.755959 TGCATATGCCAATGGGTTCAC 59.244 47.619 24.54 0.00 41.18 3.18
8962 13966 1.755959 GTGCATATGCCAATGGGTTCA 59.244 47.619 24.54 0.00 41.18 3.18
8963 13967 1.069049 GGTGCATATGCCAATGGGTTC 59.931 52.381 24.54 4.32 41.18 3.62
8964 13968 1.122227 GGTGCATATGCCAATGGGTT 58.878 50.000 24.54 0.00 41.18 4.11
8965 13969 0.760189 GGGTGCATATGCCAATGGGT 60.760 55.000 24.54 0.00 41.18 4.51
8966 13970 0.759812 TGGGTGCATATGCCAATGGG 60.760 55.000 24.54 0.00 41.18 4.00
8967 13971 0.390124 GTGGGTGCATATGCCAATGG 59.610 55.000 24.54 0.00 41.18 3.16
8968 13972 1.405872 AGTGGGTGCATATGCCAATG 58.594 50.000 24.54 0.00 41.18 2.82
8969 13973 2.163810 AAGTGGGTGCATATGCCAAT 57.836 45.000 24.54 11.94 41.18 3.16
8970 13974 1.935799 AAAGTGGGTGCATATGCCAA 58.064 45.000 24.54 4.28 41.18 4.52
8971 13975 1.549620 CAAAAGTGGGTGCATATGCCA 59.450 47.619 24.54 12.74 41.18 4.92
8972 13976 1.824230 TCAAAAGTGGGTGCATATGCC 59.176 47.619 24.54 15.25 41.18 4.40
8973 13977 3.591196 TTCAAAAGTGGGTGCATATGC 57.409 42.857 21.09 21.09 42.50 3.14
8974 13978 6.621164 GCATTTTTCAAAAGTGGGTGCATATG 60.621 38.462 7.42 0.00 32.23 1.78
8975 13979 5.412286 GCATTTTTCAAAAGTGGGTGCATAT 59.588 36.000 7.42 0.00 32.23 1.78
8976 13980 4.754114 GCATTTTTCAAAAGTGGGTGCATA 59.246 37.500 7.42 0.00 32.23 3.14
8977 13981 3.565063 GCATTTTTCAAAAGTGGGTGCAT 59.435 39.130 7.42 0.00 32.23 3.96
8978 13982 2.941720 GCATTTTTCAAAAGTGGGTGCA 59.058 40.909 7.42 0.00 32.23 4.57
8979 13983 2.941720 TGCATTTTTCAAAAGTGGGTGC 59.058 40.909 7.42 5.68 32.45 5.01
8980 13984 5.754543 AATGCATTTTTCAAAAGTGGGTG 57.245 34.783 5.99 0.00 0.00 4.61
8981 13985 6.772360 AAAATGCATTTTTCAAAAGTGGGT 57.228 29.167 27.73 5.10 36.65 4.51
8982 13986 7.379262 GCTTAAAATGCATTTTTCAAAAGTGGG 59.621 33.333 35.18 16.24 40.24 4.61
8983 13987 8.130469 AGCTTAAAATGCATTTTTCAAAAGTGG 58.870 29.630 35.18 16.79 40.24 4.00
9022 14026 9.853555 TGTATGCGTGATATTTTCTTTTGAATT 57.146 25.926 0.00 0.00 38.37 2.17
9024 14028 9.288124 CATGTATGCGTGATATTTTCTTTTGAA 57.712 29.630 0.00 0.00 33.52 2.69
9025 14029 8.458052 ACATGTATGCGTGATATTTTCTTTTGA 58.542 29.630 10.22 0.00 35.65 2.69
9026 14030 8.619146 ACATGTATGCGTGATATTTTCTTTTG 57.381 30.769 10.22 0.00 35.65 2.44
9027 14031 9.289303 GAACATGTATGCGTGATATTTTCTTTT 57.711 29.630 10.22 0.00 35.65 2.27
9028 14032 7.639850 CGAACATGTATGCGTGATATTTTCTTT 59.360 33.333 10.22 0.00 35.65 2.52
9029 14033 7.125755 CGAACATGTATGCGTGATATTTTCTT 58.874 34.615 10.22 0.00 35.65 2.52
9030 14034 6.649436 CGAACATGTATGCGTGATATTTTCT 58.351 36.000 10.22 0.00 35.65 2.52
9031 14035 5.336990 GCGAACATGTATGCGTGATATTTTC 59.663 40.000 10.22 2.14 35.65 2.29
9032 14036 5.204833 GCGAACATGTATGCGTGATATTTT 58.795 37.500 10.22 0.00 35.65 1.82
9033 14037 4.272261 TGCGAACATGTATGCGTGATATTT 59.728 37.500 10.22 0.00 35.65 1.40
9034 14038 3.807071 TGCGAACATGTATGCGTGATATT 59.193 39.130 10.22 0.00 35.65 1.28
9035 14039 3.389221 TGCGAACATGTATGCGTGATAT 58.611 40.909 10.22 0.00 35.65 1.63
9036 14040 2.815478 TGCGAACATGTATGCGTGATA 58.185 42.857 10.22 0.00 35.65 2.15
9037 14041 1.650825 TGCGAACATGTATGCGTGAT 58.349 45.000 10.22 0.00 35.65 3.06
9038 14042 1.433534 TTGCGAACATGTATGCGTGA 58.566 45.000 10.22 4.03 35.65 4.35
9039 14043 2.456942 ATTGCGAACATGTATGCGTG 57.543 45.000 15.10 0.95 37.62 5.34
9040 14044 2.784505 CAATTGCGAACATGTATGCGT 58.215 42.857 15.10 6.09 0.00 5.24
9041 14045 1.513994 GCAATTGCGAACATGTATGCG 59.486 47.619 15.87 12.72 0.00 4.73
9061 14065 7.010606 TCATAAAACTTTGTGTTGCGTATACG 58.989 34.615 20.87 20.87 39.13 3.06
9062 14066 8.716619 TTCATAAAACTTTGTGTTGCGTATAC 57.283 30.769 0.00 0.00 39.13 1.47
9063 14067 9.731819 TTTTCATAAAACTTTGTGTTGCGTATA 57.268 25.926 0.00 0.00 39.13 1.47
9064 14068 8.635877 TTTTCATAAAACTTTGTGTTGCGTAT 57.364 26.923 0.00 0.00 39.13 3.06
9065 14069 8.462143 TTTTTCATAAAACTTTGTGTTGCGTA 57.538 26.923 0.00 0.00 39.13 4.42
9066 14070 6.952935 TTTTCATAAAACTTTGTGTTGCGT 57.047 29.167 0.00 0.00 39.13 5.24
9087 14091 8.664798 GCAGAGGTAAAACAAAAAGACATTTTT 58.335 29.630 0.00 0.00 46.97 1.94
9088 14092 7.821846 TGCAGAGGTAAAACAAAAAGACATTTT 59.178 29.630 0.00 0.00 41.93 1.82
9089 14093 7.327214 TGCAGAGGTAAAACAAAAAGACATTT 58.673 30.769 0.00 0.00 0.00 2.32
9090 14094 6.872920 TGCAGAGGTAAAACAAAAAGACATT 58.127 32.000 0.00 0.00 0.00 2.71
9091 14095 6.463995 TGCAGAGGTAAAACAAAAAGACAT 57.536 33.333 0.00 0.00 0.00 3.06
9092 14096 5.906113 TGCAGAGGTAAAACAAAAAGACA 57.094 34.783 0.00 0.00 0.00 3.41
9093 14097 7.589574 TTTTGCAGAGGTAAAACAAAAAGAC 57.410 32.000 0.00 0.00 37.30 3.01
9115 14119 9.974980 TTTAGAAGCACCGAAATTTATCTTTTT 57.025 25.926 0.00 0.00 0.00 1.94
9119 14123 9.614792 ACTATTTAGAAGCACCGAAATTTATCT 57.385 29.630 0.00 0.00 0.00 1.98
9120 14124 9.651718 CACTATTTAGAAGCACCGAAATTTATC 57.348 33.333 0.00 0.00 0.00 1.75
9121 14125 9.174166 ACACTATTTAGAAGCACCGAAATTTAT 57.826 29.630 0.00 0.00 0.00 1.40
9122 14126 8.556213 ACACTATTTAGAAGCACCGAAATTTA 57.444 30.769 0.00 0.00 0.00 1.40
9123 14127 7.448748 ACACTATTTAGAAGCACCGAAATTT 57.551 32.000 0.00 0.00 0.00 1.82
9124 14128 7.448748 AACACTATTTAGAAGCACCGAAATT 57.551 32.000 2.86 0.00 0.00 1.82
9125 14129 7.174253 TGAAACACTATTTAGAAGCACCGAAAT 59.826 33.333 0.00 0.00 0.00 2.17
9126 14130 6.483974 TGAAACACTATTTAGAAGCACCGAAA 59.516 34.615 0.00 0.00 0.00 3.46
9127 14131 5.992829 TGAAACACTATTTAGAAGCACCGAA 59.007 36.000 0.00 0.00 0.00 4.30
9128 14132 5.543714 TGAAACACTATTTAGAAGCACCGA 58.456 37.500 0.00 0.00 0.00 4.69
9129 14133 5.856126 TGAAACACTATTTAGAAGCACCG 57.144 39.130 0.00 0.00 0.00 4.94
9130 14134 7.094805 TGTCATGAAACACTATTTAGAAGCACC 60.095 37.037 0.00 0.00 0.00 5.01
9131 14135 7.806690 TGTCATGAAACACTATTTAGAAGCAC 58.193 34.615 0.00 0.00 0.00 4.40
9132 14136 7.977789 TGTCATGAAACACTATTTAGAAGCA 57.022 32.000 0.00 0.00 0.00 3.91
9170 14174 2.479566 TTTTGTGGCCTGTGCAAAAA 57.520 40.000 18.44 8.68 38.59 1.94
9171 14175 2.479566 TTTTTGTGGCCTGTGCAAAA 57.520 40.000 17.49 17.49 39.41 2.44
9191 14195 9.482627 TGCATAAAGTTTCACGGAAAAATATTT 57.517 25.926 0.00 0.00 33.14 1.40
9192 14196 8.921670 GTGCATAAAGTTTCACGGAAAAATATT 58.078 29.630 0.00 0.00 33.14 1.28
9193 14197 7.272515 CGTGCATAAAGTTTCACGGAAAAATAT 59.727 33.333 16.45 0.05 45.76 1.28
9194 14198 6.579292 CGTGCATAAAGTTTCACGGAAAAATA 59.421 34.615 16.45 0.00 45.76 1.40
9195 14199 5.401079 CGTGCATAAAGTTTCACGGAAAAAT 59.599 36.000 16.45 0.00 45.76 1.82
9196 14200 4.735822 CGTGCATAAAGTTTCACGGAAAAA 59.264 37.500 16.45 0.00 45.76 1.94
9197 14201 4.283678 CGTGCATAAAGTTTCACGGAAAA 58.716 39.130 16.45 0.00 45.76 2.29
9198 14202 3.879427 CGTGCATAAAGTTTCACGGAAA 58.121 40.909 16.45 0.00 45.76 3.13
9199 14203 3.529634 CGTGCATAAAGTTTCACGGAA 57.470 42.857 16.45 0.00 45.76 4.30
9203 14207 2.993545 TGTGCGTGCATAAAGTTTCAC 58.006 42.857 0.00 0.00 0.00 3.18
9204 14208 3.913548 ATGTGCGTGCATAAAGTTTCA 57.086 38.095 0.00 0.00 0.00 2.69
9205 14209 5.216566 TCTATGTGCGTGCATAAAGTTTC 57.783 39.130 0.00 0.00 31.76 2.78
9206 14210 5.049060 TGTTCTATGTGCGTGCATAAAGTTT 60.049 36.000 0.00 0.00 31.76 2.66
9207 14211 4.454161 TGTTCTATGTGCGTGCATAAAGTT 59.546 37.500 0.00 0.00 31.76 2.66
9208 14212 4.000325 TGTTCTATGTGCGTGCATAAAGT 59.000 39.130 0.00 0.00 31.76 2.66
9209 14213 4.598406 TGTTCTATGTGCGTGCATAAAG 57.402 40.909 0.00 0.00 31.76 1.85
9210 14214 4.201901 CCATGTTCTATGTGCGTGCATAAA 60.202 41.667 0.00 0.00 31.76 1.40
9211 14215 3.312146 CCATGTTCTATGTGCGTGCATAA 59.688 43.478 0.00 0.00 31.76 1.90
9212 14216 2.871633 CCATGTTCTATGTGCGTGCATA 59.128 45.455 0.00 0.00 0.00 3.14
9213 14217 1.672363 CCATGTTCTATGTGCGTGCAT 59.328 47.619 0.00 0.12 0.00 3.96
9214 14218 1.085893 CCATGTTCTATGTGCGTGCA 58.914 50.000 0.00 0.00 0.00 4.57
9215 14219 1.328680 CTCCATGTTCTATGTGCGTGC 59.671 52.381 0.00 0.00 0.00 5.34
9216 14220 2.604914 GTCTCCATGTTCTATGTGCGTG 59.395 50.000 0.00 0.00 0.00 5.34
9217 14221 2.735444 CGTCTCCATGTTCTATGTGCGT 60.735 50.000 0.00 0.00 0.00 5.24
9218 14222 1.854743 CGTCTCCATGTTCTATGTGCG 59.145 52.381 0.00 0.00 0.00 5.34
9219 14223 3.165058 TCGTCTCCATGTTCTATGTGC 57.835 47.619 0.00 0.00 0.00 4.57
9220 14224 3.865745 GGTTCGTCTCCATGTTCTATGTG 59.134 47.826 0.00 0.00 0.00 3.21
9221 14225 3.118738 GGGTTCGTCTCCATGTTCTATGT 60.119 47.826 0.00 0.00 0.00 2.29
9222 14226 3.458189 GGGTTCGTCTCCATGTTCTATG 58.542 50.000 0.00 0.00 0.00 2.23
9223 14227 2.100916 CGGGTTCGTCTCCATGTTCTAT 59.899 50.000 0.00 0.00 0.00 1.98
9224 14228 1.475280 CGGGTTCGTCTCCATGTTCTA 59.525 52.381 0.00 0.00 0.00 2.10
9225 14229 0.246635 CGGGTTCGTCTCCATGTTCT 59.753 55.000 0.00 0.00 0.00 3.01
9226 14230 1.359459 GCGGGTTCGTCTCCATGTTC 61.359 60.000 0.00 0.00 38.89 3.18
9227 14231 1.375523 GCGGGTTCGTCTCCATGTT 60.376 57.895 0.00 0.00 38.89 2.71
9228 14232 2.264794 GCGGGTTCGTCTCCATGT 59.735 61.111 0.00 0.00 38.89 3.21
9229 14233 2.274232 TACGCGGGTTCGTCTCCATG 62.274 60.000 11.50 0.00 43.15 3.66
9230 14234 1.597797 TTACGCGGGTTCGTCTCCAT 61.598 55.000 11.50 0.00 43.15 3.41
9231 14235 1.597797 ATTACGCGGGTTCGTCTCCA 61.598 55.000 11.50 0.00 43.15 3.86
9232 14236 0.459063 AATTACGCGGGTTCGTCTCC 60.459 55.000 11.50 0.00 43.15 3.71
9233 14237 1.353076 AAATTACGCGGGTTCGTCTC 58.647 50.000 11.50 0.00 43.15 3.36
9234 14238 1.799544 AAAATTACGCGGGTTCGTCT 58.200 45.000 11.50 0.00 43.15 4.18
9235 14239 2.599739 AAAAATTACGCGGGTTCGTC 57.400 45.000 11.50 0.00 43.15 4.20
9275 14279 7.569240 ACCCATTTTGGAAAACACATTTCTAA 58.431 30.769 0.00 0.00 45.57 2.10
9276 14280 7.130681 ACCCATTTTGGAAAACACATTTCTA 57.869 32.000 0.00 0.00 45.57 2.10
9277 14281 6.000246 ACCCATTTTGGAAAACACATTTCT 58.000 33.333 0.00 0.00 45.57 2.52
9278 14282 6.317391 TGAACCCATTTTGGAAAACACATTTC 59.683 34.615 0.00 0.00 45.55 2.17
9279 14283 6.183347 TGAACCCATTTTGGAAAACACATTT 58.817 32.000 0.00 0.00 40.96 2.32
9280 14284 5.749462 TGAACCCATTTTGGAAAACACATT 58.251 33.333 0.00 0.00 40.96 2.71
9281 14285 5.365021 TGAACCCATTTTGGAAAACACAT 57.635 34.783 0.00 0.00 40.96 3.21
9282 14286 4.826274 TGAACCCATTTTGGAAAACACA 57.174 36.364 0.00 0.00 40.96 3.72
9283 14287 6.934083 ACATATGAACCCATTTTGGAAAACAC 59.066 34.615 10.38 0.00 40.96 3.32
9284 14288 7.072263 ACATATGAACCCATTTTGGAAAACA 57.928 32.000 10.38 0.00 40.96 2.83
9285 14289 6.593770 GGACATATGAACCCATTTTGGAAAAC 59.406 38.462 10.38 0.00 40.96 2.43
9286 14290 6.296145 GGGACATATGAACCCATTTTGGAAAA 60.296 38.462 25.93 0.00 40.96 2.29
9287 14291 5.188751 GGGACATATGAACCCATTTTGGAAA 59.811 40.000 25.93 0.00 40.96 3.13
9288 14292 4.714308 GGGACATATGAACCCATTTTGGAA 59.286 41.667 25.93 0.00 40.96 3.53
9289 14293 4.285863 GGGACATATGAACCCATTTTGGA 58.714 43.478 25.93 0.00 40.96 3.53
9290 14294 3.068024 CGGGACATATGAACCCATTTTGG 59.932 47.826 28.10 15.40 43.40 3.28
9291 14295 3.068024 CCGGGACATATGAACCCATTTTG 59.932 47.826 28.10 17.77 43.40 2.44
9292 14296 3.053245 TCCGGGACATATGAACCCATTTT 60.053 43.478 28.10 1.03 43.40 1.82
9293 14297 2.512056 TCCGGGACATATGAACCCATTT 59.488 45.455 28.10 1.65 43.40 2.32
9294 14298 2.131854 TCCGGGACATATGAACCCATT 58.868 47.619 28.10 2.29 43.40 3.16
9295 14299 1.814429 TCCGGGACATATGAACCCAT 58.186 50.000 28.10 2.92 43.40 4.00
9296 14300 1.814429 ATCCGGGACATATGAACCCA 58.186 50.000 28.10 17.62 43.40 4.51
9297 14301 2.951229 AATCCGGGACATATGAACCC 57.049 50.000 23.12 23.12 40.17 4.11
9298 14302 4.941873 GGATAAATCCGGGACATATGAACC 59.058 45.833 10.38 11.86 37.19 3.62
9312 14316 5.048224 CATGGAGAAGTGCATGGATAAATCC 60.048 44.000 1.79 1.79 46.11 3.01
9313 14317 6.010294 CATGGAGAAGTGCATGGATAAATC 57.990 41.667 0.00 0.00 46.11 2.17
9322 14326 3.118149 TGCTATGTCATGGAGAAGTGCAT 60.118 43.478 0.00 0.00 34.48 3.96
9323 14327 2.236893 TGCTATGTCATGGAGAAGTGCA 59.763 45.455 0.00 0.00 0.00 4.57
9324 14328 2.910199 TGCTATGTCATGGAGAAGTGC 58.090 47.619 0.00 0.00 0.00 4.40
9333 14337 5.571784 ACAAAGAACCATGCTATGTCATG 57.428 39.130 0.00 0.00 42.53 3.07
9334 14338 5.477984 ACAACAAAGAACCATGCTATGTCAT 59.522 36.000 0.00 0.00 0.00 3.06
9335 14339 4.826733 ACAACAAAGAACCATGCTATGTCA 59.173 37.500 0.00 0.00 0.00 3.58
9336 14340 5.376854 ACAACAAAGAACCATGCTATGTC 57.623 39.130 0.00 0.00 0.00 3.06
9337 14341 4.083324 CGACAACAAAGAACCATGCTATGT 60.083 41.667 0.00 0.00 0.00 2.29
9380 14387 6.700081 TGTAATACTGAATGCAAGGTCGATAC 59.300 38.462 0.00 0.00 0.00 2.24
9474 14485 5.229423 GTTCAACATATTTTGCCAAGCTGA 58.771 37.500 0.00 0.00 0.00 4.26
9492 14503 1.889829 CTAACCAAATGCCCGGTTCAA 59.110 47.619 0.00 0.00 44.40 2.69
9515 14527 3.462205 GGTACAATACAAGGAGGGGGATT 59.538 47.826 0.00 0.00 0.00 3.01
9518 14530 2.201830 TGGTACAATACAAGGAGGGGG 58.798 52.381 0.00 0.00 31.92 5.40
9538 14568 8.380742 TCAGGGTAACATCTTCTAGAAAAGAT 57.619 34.615 6.63 3.89 44.84 2.40
9539 14569 7.792364 TCAGGGTAACATCTTCTAGAAAAGA 57.208 36.000 6.63 1.36 39.49 2.52
9542 14572 9.268282 ACTAATCAGGGTAACATCTTCTAGAAA 57.732 33.333 6.63 0.00 39.74 2.52
9544 14574 8.840200 AACTAATCAGGGTAACATCTTCTAGA 57.160 34.615 0.00 0.00 39.74 2.43
9548 14578 9.832445 TTCATAACTAATCAGGGTAACATCTTC 57.168 33.333 0.00 0.00 39.74 2.87
9609 14639 2.203195 TCAGTGCACACCTGCCAC 60.203 61.111 21.04 0.00 43.51 5.01
9614 14644 0.541392 TGTGAACTCAGTGCACACCT 59.459 50.000 15.35 0.00 43.76 4.00
9615 14645 0.940126 CTGTGAACTCAGTGCACACC 59.060 55.000 15.35 0.00 43.76 4.16
9616 14646 1.656652 ACTGTGAACTCAGTGCACAC 58.343 50.000 15.35 8.61 43.76 3.82
9618 14648 4.875544 TTTTACTGTGAACTCAGTGCAC 57.124 40.909 9.29 9.29 46.36 4.57
9619 14649 6.449635 AAATTTTACTGTGAACTCAGTGCA 57.550 33.333 16.37 0.00 46.36 4.57
9620 14650 7.755582 AAAAATTTTACTGTGAACTCAGTGC 57.244 32.000 16.37 0.00 46.36 4.40
9645 14675 7.064016 GGTAAGTGTGCATTTGTTTCTCAAAAA 59.936 33.333 0.00 0.00 46.97 1.94
9646 14676 6.533367 GGTAAGTGTGCATTTGTTTCTCAAAA 59.467 34.615 0.00 0.00 46.97 2.44
9648 14678 5.587289 GGTAAGTGTGCATTTGTTTCTCAA 58.413 37.500 0.00 0.00 0.00 3.02
9649 14679 5.181690 GGTAAGTGTGCATTTGTTTCTCA 57.818 39.130 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.