Multiple sequence alignment - TraesCS4A01G228300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G228300 chr4A 100.000 4703 0 0 1 4703 536796577 536791875 0.000000e+00 8685.0
1 TraesCS4A01G228300 chr4A 86.957 253 31 2 4420 4671 13149629 13149880 2.770000e-72 283.0
2 TraesCS4A01G228300 chr4A 90.500 200 15 4 4506 4703 536791217 536791414 1.300000e-65 261.0
3 TraesCS4A01G228300 chr4A 89.764 127 12 1 803 929 661035525 661035400 1.350000e-35 161.0
4 TraesCS4A01G228300 chr4D 94.282 3760 124 41 545 4256 59622023 59625739 0.000000e+00 5668.0
5 TraesCS4A01G228300 chr4D 90.671 343 14 4 1 336 59620076 59620407 1.550000e-119 440.0
6 TraesCS4A01G228300 chr4D 91.765 170 8 2 4265 4429 59625795 59625963 1.020000e-56 231.0
7 TraesCS4A01G228300 chr4B 95.609 3302 113 17 565 3858 89000557 89003834 0.000000e+00 5265.0
8 TraesCS4A01G228300 chr4B 92.008 488 23 9 1 482 89000061 89000538 0.000000e+00 671.0
9 TraesCS4A01G228300 chr4B 93.659 410 15 3 3856 4256 89005242 89005649 1.870000e-168 603.0
10 TraesCS4A01G228300 chr4B 93.939 165 8 2 4265 4429 89005711 89005873 1.010000e-61 248.0
11 TraesCS4A01G228300 chr4B 90.769 130 10 2 803 931 544639707 544639835 6.260000e-39 172.0
12 TraesCS4A01G228300 chr1A 96.364 275 8 2 4429 4703 290857446 290857718 7.180000e-123 451.0
13 TraesCS4A01G228300 chr1A 100.000 28 0 0 516 543 555555191 555555218 9.000000e-03 52.8
14 TraesCS4A01G228300 chr3A 89.855 276 27 1 4428 4703 28461369 28461095 2.080000e-93 353.0
15 TraesCS4A01G228300 chr3A 79.032 124 21 3 1336 1457 688676462 688676342 3.900000e-11 80.5
16 TraesCS4A01G228300 chr6A 88.060 268 30 2 663 929 268841543 268841277 2.730000e-82 316.0
17 TraesCS4A01G228300 chr6A 85.490 255 31 5 4419 4672 613624959 613625208 1.300000e-65 261.0
18 TraesCS4A01G228300 chr6A 92.308 156 10 2 4422 4577 593955926 593956079 2.200000e-53 220.0
19 TraesCS4A01G228300 chr6A 100.000 28 0 0 516 543 159728983 159728956 9.000000e-03 52.8
20 TraesCS4A01G228300 chr2A 85.657 251 30 6 4420 4668 734882935 734882689 4.670000e-65 259.0
21 TraesCS4A01G228300 chr2A 90.400 125 11 1 803 927 745769839 745769962 3.770000e-36 163.0
22 TraesCS4A01G228300 chr2D 90.909 187 17 0 4429 4615 191001210 191001396 7.810000e-63 252.0
23 TraesCS4A01G228300 chr2D 87.500 56 1 2 516 565 130821462 130821517 5.080000e-05 60.2
24 TraesCS4A01G228300 chr1D 89.500 200 17 3 4506 4703 80967875 80968072 2.810000e-62 250.0
25 TraesCS4A01G228300 chr1D 88.732 142 12 4 4407 4545 462927025 462926885 2.250000e-38 171.0
26 TraesCS4A01G228300 chr1D 88.732 142 11 5 4407 4545 462924990 462924851 8.090000e-38 169.0
27 TraesCS4A01G228300 chr1D 87.943 141 15 2 4407 4545 462967459 462967319 1.050000e-36 165.0
28 TraesCS4A01G228300 chr1D 87.234 141 16 2 4407 4545 462887507 462887367 4.870000e-35 159.0
29 TraesCS4A01G228300 chr1D 88.148 135 14 2 4413 4545 462900315 462900181 4.870000e-35 159.0
30 TraesCS4A01G228300 chr1D 87.324 142 14 4 4407 4545 462913148 462913008 4.870000e-35 159.0
31 TraesCS4A01G228300 chr1D 87.234 141 16 2 4407 4545 462917762 462917622 4.870000e-35 159.0
32 TraesCS4A01G228300 chr1D 87.324 142 14 4 4407 4545 462920376 462920236 4.870000e-35 159.0
33 TraesCS4A01G228300 chr1D 86.525 141 17 2 4407 4545 462910534 462910394 2.270000e-33 154.0
34 TraesCS4A01G228300 chr1D 94.118 34 2 0 516 549 54972992 54972959 9.000000e-03 52.8
35 TraesCS4A01G228300 chr3D 89.163 203 13 3 4478 4677 466836711 466836907 1.310000e-60 244.0
36 TraesCS4A01G228300 chr3D 100.000 28 0 0 516 543 418724795 418724768 9.000000e-03 52.8
37 TraesCS4A01G228300 chr3D 100.000 28 0 0 516 543 556951460 556951433 9.000000e-03 52.8
38 TraesCS4A01G228300 chr6B 94.286 35 2 0 516 550 435837694 435837728 2.000000e-03 54.7
39 TraesCS4A01G228300 chr7D 100.000 28 0 0 516 543 554411184 554411211 9.000000e-03 52.8
40 TraesCS4A01G228300 chr5B 100.000 28 0 0 516 543 694314126 694314099 9.000000e-03 52.8
41 TraesCS4A01G228300 chr5A 100.000 28 0 0 516 543 211618005 211618032 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G228300 chr4A 536791875 536796577 4702 True 8685.00 8685 100.000000 1 4703 1 chr4A.!!$R1 4702
1 TraesCS4A01G228300 chr4D 59620076 59625963 5887 False 2113.00 5668 92.239333 1 4429 3 chr4D.!!$F1 4428
2 TraesCS4A01G228300 chr4B 89000061 89005873 5812 False 1696.75 5265 93.803750 1 4429 4 chr4B.!!$F2 4428

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
952 2382 0.099968 CGGTGCCAATGCTTCATCAG 59.900 55.0 0.0 0.0 38.71 2.90 F
2183 3627 0.174845 CAATCGACAGGTTAGGCGGA 59.825 55.0 0.0 0.0 0.00 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2655 4103 0.101399 CACGGAGAGGACCTGATTCG 59.899 60.0 0.0 0.0 0.0 3.34 R
4122 6999 0.396417 GAGGAGCTAGGACAGGCAGA 60.396 60.0 0.0 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.407361 CCGCACGTATAATTCGATCACC 59.593 50.000 0.00 0.00 0.00 4.02
60 61 2.226437 CCAAGTGGAACAACATCCTTCG 59.774 50.000 0.00 0.00 44.16 3.79
166 167 2.029828 GGACTGATTCTCCGATACGCAT 60.030 50.000 0.00 0.00 0.00 4.73
186 187 5.494632 CATCTCTGCAGTATTGAATTGCA 57.505 39.130 14.67 4.65 44.81 4.08
195 196 8.909708 TGCAGTATTGAATTGCAAATTAGTAC 57.090 30.769 1.71 3.44 44.13 2.73
196 197 8.518702 TGCAGTATTGAATTGCAAATTAGTACA 58.481 29.630 1.71 0.00 44.13 2.90
197 198 9.520204 GCAGTATTGAATTGCAAATTAGTACAT 57.480 29.630 1.71 0.00 40.48 2.29
338 394 7.937942 CCATTGATGAAGAAGGTAGAGATCAAT 59.062 37.037 0.00 0.00 38.82 2.57
415 474 0.179089 CACTGGCCGATCTGAAGAGG 60.179 60.000 0.00 0.00 0.00 3.69
463 1661 4.461781 ACAATGCTTCTCTCCTTGAAATGG 59.538 41.667 0.00 0.00 0.00 3.16
464 1662 4.581309 ATGCTTCTCTCCTTGAAATGGA 57.419 40.909 0.00 0.00 37.91 3.41
482 1680 9.295825 TGAAATGGAGTATGTGTGTTCTAAAAT 57.704 29.630 0.00 0.00 0.00 1.82
485 1683 9.959721 AATGGAGTATGTGTGTTCTAAAATAGT 57.040 29.630 0.00 0.00 0.00 2.12
491 1689 6.442487 TGTGTGTTCTAAAATAGTTCGTCG 57.558 37.500 0.00 0.00 0.00 5.12
497 1695 9.456797 GTGTTCTAAAATAGTTCGTCGTTATTG 57.543 33.333 0.00 0.00 0.00 1.90
522 1720 9.561069 TGATGTAAATAAATTAGAGCTTCCTCC 57.439 33.333 0.00 0.00 38.96 4.30
523 1721 8.608844 ATGTAAATAAATTAGAGCTTCCTCCG 57.391 34.615 0.00 0.00 38.96 4.63
526 1724 3.545366 AAATTAGAGCTTCCTCCGTCC 57.455 47.619 0.00 0.00 38.96 4.79
527 1725 1.415200 ATTAGAGCTTCCTCCGTCCC 58.585 55.000 0.00 0.00 38.96 4.46
529 1727 0.261991 TAGAGCTTCCTCCGTCCCAT 59.738 55.000 0.00 0.00 38.96 4.00
530 1728 0.261991 AGAGCTTCCTCCGTCCCATA 59.738 55.000 0.00 0.00 38.96 2.74
531 1729 1.120530 GAGCTTCCTCCGTCCCATAA 58.879 55.000 0.00 0.00 31.68 1.90
532 1730 1.694696 GAGCTTCCTCCGTCCCATAAT 59.305 52.381 0.00 0.00 31.68 1.28
534 1732 3.515901 GAGCTTCCTCCGTCCCATAATAT 59.484 47.826 0.00 0.00 31.68 1.28
535 1733 4.684724 AGCTTCCTCCGTCCCATAATATA 58.315 43.478 0.00 0.00 0.00 0.86
537 1735 5.187967 AGCTTCCTCCGTCCCATAATATAAG 59.812 44.000 0.00 0.00 0.00 1.73
538 1736 5.187186 GCTTCCTCCGTCCCATAATATAAGA 59.813 44.000 0.00 0.00 0.00 2.10
539 1737 6.628398 GCTTCCTCCGTCCCATAATATAAGAG 60.628 46.154 0.00 0.00 0.00 2.85
541 1739 4.466370 CCTCCGTCCCATAATATAAGAGCA 59.534 45.833 0.00 0.00 0.00 4.26
542 1740 5.129485 CCTCCGTCCCATAATATAAGAGCAT 59.871 44.000 0.00 0.00 0.00 3.79
543 1741 6.222038 TCCGTCCCATAATATAAGAGCATC 57.778 41.667 0.00 0.00 0.00 3.91
562 1982 4.142271 GCATCTATTATGAGACGGAGGGAG 60.142 50.000 0.00 0.00 0.00 4.30
563 1983 4.726035 TCTATTATGAGACGGAGGGAGT 57.274 45.455 0.00 0.00 0.00 3.85
634 2059 4.881920 ACAAATGTGCCCTCATTGTTTAC 58.118 39.130 0.00 0.00 37.96 2.01
725 2150 1.067516 GCTGAGCAAACAAGGAAAGCA 59.932 47.619 0.00 0.00 0.00 3.91
760 2189 9.846248 GCACTCATAGAAAACATGAACTTAAAT 57.154 29.630 0.00 0.00 32.20 1.40
871 2301 5.163764 TGACGGACAATTCTTATGATTGTGC 60.164 40.000 7.15 8.85 41.26 4.57
898 2328 9.494271 AGCTGTATATAAAGTTCCACATACATG 57.506 33.333 1.84 0.00 30.77 3.21
918 2348 5.163364 ACATGAATCTCCACTCATCTGGTAC 60.163 44.000 0.00 0.00 29.69 3.34
949 2379 0.527565 GTTCGGTGCCAATGCTTCAT 59.472 50.000 0.00 0.00 38.71 2.57
951 2381 0.322366 TCGGTGCCAATGCTTCATCA 60.322 50.000 0.00 0.00 38.71 3.07
952 2382 0.099968 CGGTGCCAATGCTTCATCAG 59.900 55.000 0.00 0.00 38.71 2.90
1075 2511 1.280710 ACGCCATTGATGTAGTTCCCA 59.719 47.619 0.00 0.00 0.00 4.37
1083 2519 6.270000 CCATTGATGTAGTTCCCATAGAGGTA 59.730 42.308 0.00 0.00 34.66 3.08
1370 2806 4.082523 CTGGTGGACGATGCCGGT 62.083 66.667 1.90 0.00 40.78 5.28
1400 2836 4.530857 CGGATGGACCACTCGCCC 62.531 72.222 0.00 0.00 38.90 6.13
1463 2899 1.443702 CTTCATCGTCGGTGTCGCA 60.444 57.895 5.22 0.00 36.13 5.10
1490 2927 3.826157 CCTTTGCCATGAAGGTCAGTAAA 59.174 43.478 0.00 0.00 39.05 2.01
1499 2936 4.380531 TGAAGGTCAGTAAAGCACTTCTG 58.619 43.478 0.00 0.00 34.26 3.02
1644 3087 1.617322 AGGTCAGCGTCAGAACACTA 58.383 50.000 0.00 0.00 0.00 2.74
1729 3173 4.128643 CAATTCAGTTTGCACCCATGTTT 58.871 39.130 0.00 0.00 0.00 2.83
1846 3290 0.744771 GCATCCTCCAGGTTCGGTTC 60.745 60.000 0.00 0.00 36.34 3.62
1873 3317 9.877178 ATATTTACCAAACAAACAAACTTGTCA 57.123 25.926 0.00 0.00 41.31 3.58
1893 3337 7.891498 TGTCATTCATTTCATCATCCATCTT 57.109 32.000 0.00 0.00 0.00 2.40
2111 3555 2.483877 TGCTGCACTGTAAACTGCATAC 59.516 45.455 0.00 0.00 42.43 2.39
2118 3562 6.823182 TGCACTGTAAACTGCATACTCATAAT 59.177 34.615 0.00 0.00 38.49 1.28
2183 3627 0.174845 CAATCGACAGGTTAGGCGGA 59.825 55.000 0.00 0.00 0.00 5.54
2196 3640 0.249120 AGGCGGATTCATCGTGTTCA 59.751 50.000 0.00 0.00 0.00 3.18
2269 3713 2.949106 CCATTCGGATGGCGATGC 59.051 61.111 10.54 0.00 45.96 3.91
2308 3752 0.900421 ACGGTACTTGGAGCTAACCC 59.100 55.000 0.00 0.00 0.00 4.11
2465 3912 1.448922 ATCTCTACTCGCAGCCCGTC 61.449 60.000 0.00 0.00 38.35 4.79
2497 3944 6.973474 CGGACTAAGGTAGAACTGTAATCTTG 59.027 42.308 0.00 0.00 0.00 3.02
2655 4103 4.576463 CAGGATTGTACATTTAGCTCACCC 59.424 45.833 0.00 0.00 0.00 4.61
2915 4363 9.693739 TGATTATCCAAAACATTGTACCAGTAT 57.306 29.630 0.00 0.00 0.00 2.12
2998 4446 3.118261 AGAGACTGAAACACTGGCTTTCA 60.118 43.478 0.55 0.55 35.93 2.69
3029 4477 1.134699 CACTCCTCTTGCTCGGCATTA 60.135 52.381 0.00 0.00 38.76 1.90
3050 4498 7.094377 GCATTATCCTTCACTTCACAAAAGGTA 60.094 37.037 0.00 0.00 39.45 3.08
3093 4541 6.525578 TCCGACACTTGAACTAATCACTAT 57.474 37.500 0.00 0.00 37.92 2.12
3130 4579 5.177142 CAGAATCTTACATCCATCGCTCTTG 59.823 44.000 0.00 0.00 0.00 3.02
3297 4746 3.318275 CCATCAGCTCTTTCCCAATGATG 59.682 47.826 6.10 6.10 42.22 3.07
3591 5041 5.752472 CCAAAAGCATGTGTTTGTCAATGTA 59.248 36.000 16.88 0.00 0.00 2.29
3643 5093 6.515862 GCTGTACGTCATATTTGGAGAGATCT 60.516 42.308 0.00 0.00 0.00 2.75
3705 5155 6.389869 TGGGGATTTACTGGAAACTATGAGAT 59.610 38.462 0.00 0.00 0.00 2.75
3788 5238 9.967346 TCGTTTTCATCCAACATTATTTTGTAA 57.033 25.926 0.00 0.00 0.00 2.41
3852 5302 7.814642 TGTCAAATTTGTTGCTTTCAATGTTT 58.185 26.923 17.47 0.00 34.29 2.83
3980 6856 4.223556 TGACCGATGGCATTAGGTAAAA 57.776 40.909 22.79 12.45 37.07 1.52
4071 6948 6.490241 TTATCCAGATGAGAGAATGCAGAA 57.510 37.500 0.00 0.00 0.00 3.02
4106 6983 1.843992 CAAGTTGCCACTTTGCTCAC 58.156 50.000 0.00 0.00 40.66 3.51
4120 6997 1.134995 TGCTCACGGATCATGAGACAC 60.135 52.381 23.58 11.00 45.46 3.67
4122 6999 1.133216 CTCACGGATCATGAGACACGT 59.867 52.381 17.34 6.27 45.46 4.49
4241 7128 7.526142 TGGCAATAGAATCTAATCGTCTACT 57.474 36.000 0.00 0.00 0.00 2.57
4256 7143 6.020971 TCGTCTACTCACAATGTACACATT 57.979 37.500 0.00 1.70 46.62 2.71
4299 7239 0.038166 TGGAATTGTCACTGCCCCTC 59.962 55.000 0.00 0.00 0.00 4.30
4318 7258 2.296190 CTCTGTTGGTTTTTACTGCCCC 59.704 50.000 0.00 0.00 0.00 5.80
4326 7266 1.243902 TTTTACTGCCCCGCTTTGAG 58.756 50.000 0.00 0.00 0.00 3.02
4335 7275 1.679032 CCCCGCTTTGAGTTAGGAAGG 60.679 57.143 0.00 0.00 0.00 3.46
4396 7341 5.180868 GTCCTATTCCTGCTAATCATGCAAG 59.819 44.000 0.00 0.00 40.13 4.01
4454 7399 9.768215 AGGGATAAGAATAATTTTTGTCCTTGA 57.232 29.630 8.83 0.00 33.93 3.02
4463 7408 6.902224 AATTTTTGTCCTTGAACTTTTCCG 57.098 33.333 0.00 0.00 0.00 4.30
4464 7409 5.646577 TTTTTGTCCTTGAACTTTTCCGA 57.353 34.783 0.00 0.00 0.00 4.55
4465 7410 4.893424 TTTGTCCTTGAACTTTTCCGAG 57.107 40.909 0.00 0.00 0.00 4.63
4466 7411 3.830744 TGTCCTTGAACTTTTCCGAGA 57.169 42.857 0.00 0.00 0.00 4.04
4467 7412 3.728845 TGTCCTTGAACTTTTCCGAGAG 58.271 45.455 0.00 0.00 0.00 3.20
4468 7413 3.134081 TGTCCTTGAACTTTTCCGAGAGT 59.866 43.478 0.00 0.00 0.00 3.24
4469 7414 4.127907 GTCCTTGAACTTTTCCGAGAGTT 58.872 43.478 0.00 0.33 38.72 3.01
4470 7415 4.575236 GTCCTTGAACTTTTCCGAGAGTTT 59.425 41.667 0.00 0.00 36.31 2.66
4471 7416 5.756833 GTCCTTGAACTTTTCCGAGAGTTTA 59.243 40.000 0.00 0.00 36.31 2.01
4472 7417 5.989777 TCCTTGAACTTTTCCGAGAGTTTAG 59.010 40.000 0.00 3.49 36.31 1.85
4473 7418 5.989777 CCTTGAACTTTTCCGAGAGTTTAGA 59.010 40.000 0.00 0.00 36.31 2.10
4474 7419 6.482308 CCTTGAACTTTTCCGAGAGTTTAGAA 59.518 38.462 0.00 0.00 36.31 2.10
4475 7420 7.012044 CCTTGAACTTTTCCGAGAGTTTAGAAA 59.988 37.037 0.00 0.00 36.31 2.52
4476 7421 7.242914 TGAACTTTTCCGAGAGTTTAGAAAC 57.757 36.000 0.00 0.00 36.31 2.78
4477 7422 6.259387 TGAACTTTTCCGAGAGTTTAGAAACC 59.741 38.462 1.52 0.00 39.71 3.27
4478 7423 4.748600 ACTTTTCCGAGAGTTTAGAAACCG 59.251 41.667 1.52 0.00 39.71 4.44
4479 7424 4.326504 TTTCCGAGAGTTTAGAAACCGT 57.673 40.909 1.52 0.00 39.71 4.83
4480 7425 3.565905 TCCGAGAGTTTAGAAACCGTC 57.434 47.619 1.52 0.00 39.71 4.79
4481 7426 2.229784 TCCGAGAGTTTAGAAACCGTCC 59.770 50.000 1.52 0.00 39.71 4.79
4482 7427 2.603953 CGAGAGTTTAGAAACCGTCCC 58.396 52.381 1.52 0.00 39.71 4.46
4483 7428 2.230750 CGAGAGTTTAGAAACCGTCCCT 59.769 50.000 1.52 0.00 39.71 4.20
4484 7429 3.672781 CGAGAGTTTAGAAACCGTCCCTC 60.673 52.174 1.52 0.00 39.71 4.30
4485 7430 3.236896 AGAGTTTAGAAACCGTCCCTCA 58.763 45.455 1.52 0.00 39.71 3.86
4486 7431 3.644738 AGAGTTTAGAAACCGTCCCTCAA 59.355 43.478 1.52 0.00 39.71 3.02
4487 7432 3.736720 AGTTTAGAAACCGTCCCTCAAC 58.263 45.455 1.52 0.00 39.71 3.18
4488 7433 3.390311 AGTTTAGAAACCGTCCCTCAACT 59.610 43.478 1.52 0.00 39.71 3.16
4489 7434 3.672767 TTAGAAACCGTCCCTCAACTC 57.327 47.619 0.00 0.00 0.00 3.01
4490 7435 0.317479 AGAAACCGTCCCTCAACTCG 59.683 55.000 0.00 0.00 0.00 4.18
4491 7436 0.316204 GAAACCGTCCCTCAACTCGA 59.684 55.000 0.00 0.00 0.00 4.04
4492 7437 0.754472 AAACCGTCCCTCAACTCGAA 59.246 50.000 0.00 0.00 0.00 3.71
4493 7438 0.754472 AACCGTCCCTCAACTCGAAA 59.246 50.000 0.00 0.00 0.00 3.46
4494 7439 0.033090 ACCGTCCCTCAACTCGAAAC 59.967 55.000 0.00 0.00 0.00 2.78
4495 7440 0.669625 CCGTCCCTCAACTCGAAACC 60.670 60.000 0.00 0.00 0.00 3.27
4496 7441 1.007336 CGTCCCTCAACTCGAAACCG 61.007 60.000 0.00 0.00 0.00 4.44
4497 7442 0.669625 GTCCCTCAACTCGAAACCGG 60.670 60.000 0.00 0.00 0.00 5.28
4498 7443 0.828762 TCCCTCAACTCGAAACCGGA 60.829 55.000 9.46 0.00 0.00 5.14
4499 7444 0.249398 CCCTCAACTCGAAACCGGAT 59.751 55.000 9.46 0.00 0.00 4.18
4500 7445 1.479323 CCCTCAACTCGAAACCGGATA 59.521 52.381 9.46 0.00 0.00 2.59
4501 7446 2.481449 CCCTCAACTCGAAACCGGATAG 60.481 54.545 9.46 0.00 0.00 2.08
4502 7447 2.165845 CCTCAACTCGAAACCGGATAGT 59.834 50.000 9.46 0.26 0.00 2.12
4503 7448 3.368116 CCTCAACTCGAAACCGGATAGTT 60.368 47.826 9.46 7.14 0.00 2.24
4504 7449 4.243270 CTCAACTCGAAACCGGATAGTTT 58.757 43.478 9.46 0.00 42.56 2.66
4505 7450 4.634199 TCAACTCGAAACCGGATAGTTTT 58.366 39.130 9.46 0.00 40.01 2.43
4506 7451 4.687483 TCAACTCGAAACCGGATAGTTTTC 59.313 41.667 9.46 6.42 40.01 2.29
4507 7452 3.248266 ACTCGAAACCGGATAGTTTTCG 58.752 45.455 23.50 23.50 40.01 3.46
4508 7453 3.248266 CTCGAAACCGGATAGTTTTCGT 58.752 45.455 26.35 0.00 40.01 3.85
4509 7454 3.244976 TCGAAACCGGATAGTTTTCGTC 58.755 45.455 26.35 2.06 40.01 4.20
4510 7455 2.346545 CGAAACCGGATAGTTTTCGTCC 59.653 50.000 22.01 0.00 40.01 4.79
4511 7456 2.391616 AACCGGATAGTTTTCGTCCC 57.608 50.000 9.46 0.00 0.00 4.46
4512 7457 1.565067 ACCGGATAGTTTTCGTCCCT 58.435 50.000 9.46 0.00 0.00 4.20
4513 7458 1.479730 ACCGGATAGTTTTCGTCCCTC 59.520 52.381 9.46 0.00 0.00 4.30
4514 7459 1.479323 CCGGATAGTTTTCGTCCCTCA 59.521 52.381 0.00 0.00 0.00 3.86
4515 7460 2.093869 CCGGATAGTTTTCGTCCCTCAA 60.094 50.000 0.00 0.00 0.00 3.02
4516 7461 2.928116 CGGATAGTTTTCGTCCCTCAAC 59.072 50.000 0.00 0.00 0.00 3.18
4517 7462 3.368116 CGGATAGTTTTCGTCCCTCAACT 60.368 47.826 0.00 0.00 33.95 3.16
4518 7463 4.142315 CGGATAGTTTTCGTCCCTCAACTA 60.142 45.833 0.00 0.00 36.43 2.24
4519 7464 5.451520 CGGATAGTTTTCGTCCCTCAACTAT 60.452 44.000 3.61 3.61 42.53 2.12
4521 7466 4.884668 AGTTTTCGTCCCTCAACTATCA 57.115 40.909 0.00 0.00 0.00 2.15
4522 7467 5.223449 AGTTTTCGTCCCTCAACTATCAA 57.777 39.130 0.00 0.00 0.00 2.57
4523 7468 5.617252 AGTTTTCGTCCCTCAACTATCAAA 58.383 37.500 0.00 0.00 0.00 2.69
4524 7469 6.059484 AGTTTTCGTCCCTCAACTATCAAAA 58.941 36.000 0.00 0.00 0.00 2.44
4525 7470 5.934935 TTTCGTCCCTCAACTATCAAAAC 57.065 39.130 0.00 0.00 0.00 2.43
4526 7471 3.934068 TCGTCCCTCAACTATCAAAACC 58.066 45.455 0.00 0.00 0.00 3.27
4527 7472 3.325425 TCGTCCCTCAACTATCAAAACCA 59.675 43.478 0.00 0.00 0.00 3.67
4528 7473 3.684788 CGTCCCTCAACTATCAAAACCAG 59.315 47.826 0.00 0.00 0.00 4.00
4529 7474 4.562757 CGTCCCTCAACTATCAAAACCAGA 60.563 45.833 0.00 0.00 0.00 3.86
4530 7475 5.501156 GTCCCTCAACTATCAAAACCAGAT 58.499 41.667 0.00 0.00 0.00 2.90
4531 7476 6.629515 CGTCCCTCAACTATCAAAACCAGATA 60.630 42.308 0.00 0.00 0.00 1.98
4532 7477 6.763610 GTCCCTCAACTATCAAAACCAGATAG 59.236 42.308 8.28 8.28 46.57 2.08
4541 7486 5.934935 TCAAAACCAGATAGTTTTCGTCC 57.065 39.130 0.00 0.00 45.73 4.79
4542 7487 4.758165 TCAAAACCAGATAGTTTTCGTCCC 59.242 41.667 0.00 0.00 45.73 4.46
4543 7488 4.635699 AAACCAGATAGTTTTCGTCCCT 57.364 40.909 0.00 0.00 36.57 4.20
4544 7489 3.889520 ACCAGATAGTTTTCGTCCCTC 57.110 47.619 0.00 0.00 0.00 4.30
4545 7490 3.170717 ACCAGATAGTTTTCGTCCCTCA 58.829 45.455 0.00 0.00 0.00 3.86
4546 7491 3.581332 ACCAGATAGTTTTCGTCCCTCAA 59.419 43.478 0.00 0.00 0.00 3.02
4547 7492 3.933332 CCAGATAGTTTTCGTCCCTCAAC 59.067 47.826 0.00 0.00 0.00 3.18
4548 7493 4.322801 CCAGATAGTTTTCGTCCCTCAACT 60.323 45.833 0.00 0.00 33.95 3.16
4549 7494 5.105473 CCAGATAGTTTTCGTCCCTCAACTA 60.105 44.000 0.00 0.00 36.43 2.24
4550 7495 6.407074 CCAGATAGTTTTCGTCCCTCAACTAT 60.407 42.308 3.61 3.61 42.53 2.12
4552 7497 4.884668 AGTTTTCGTCCCTCAACTATCA 57.115 40.909 0.00 0.00 0.00 2.15
4553 7498 5.223449 AGTTTTCGTCCCTCAACTATCAA 57.777 39.130 0.00 0.00 0.00 2.57
4554 7499 5.617252 AGTTTTCGTCCCTCAACTATCAAA 58.383 37.500 0.00 0.00 0.00 2.69
4555 7500 6.059484 AGTTTTCGTCCCTCAACTATCAAAA 58.941 36.000 0.00 0.00 0.00 2.44
4556 7501 5.934935 TTTCGTCCCTCAACTATCAAAAC 57.065 39.130 0.00 0.00 0.00 2.43
4557 7502 3.934068 TCGTCCCTCAACTATCAAAACC 58.066 45.455 0.00 0.00 0.00 3.27
4558 7503 2.671396 CGTCCCTCAACTATCAAAACCG 59.329 50.000 0.00 0.00 0.00 4.44
4559 7504 3.007635 GTCCCTCAACTATCAAAACCGG 58.992 50.000 0.00 0.00 0.00 5.28
4560 7505 2.907696 TCCCTCAACTATCAAAACCGGA 59.092 45.455 9.46 0.00 0.00 5.14
4561 7506 3.521937 TCCCTCAACTATCAAAACCGGAT 59.478 43.478 9.46 0.00 0.00 4.18
4562 7507 4.717778 TCCCTCAACTATCAAAACCGGATA 59.282 41.667 9.46 0.00 0.00 2.59
4563 7508 5.057149 CCCTCAACTATCAAAACCGGATAG 58.943 45.833 9.46 7.05 46.19 2.08
4570 7515 6.657836 CTATCAAAACCGGATAGTTTTCGT 57.342 37.500 9.46 0.00 45.73 3.85
4571 7516 4.996062 TCAAAACCGGATAGTTTTCGTC 57.004 40.909 9.46 0.00 45.73 4.20
4572 7517 3.747529 TCAAAACCGGATAGTTTTCGTCC 59.252 43.478 9.46 0.00 45.73 4.79
4573 7518 2.391616 AACCGGATAGTTTTCGTCCC 57.608 50.000 9.46 0.00 0.00 4.46
4574 7519 1.565067 ACCGGATAGTTTTCGTCCCT 58.435 50.000 9.46 0.00 0.00 4.20
4575 7520 1.479730 ACCGGATAGTTTTCGTCCCTC 59.520 52.381 9.46 0.00 0.00 4.30
4576 7521 1.479323 CCGGATAGTTTTCGTCCCTCA 59.521 52.381 0.00 0.00 0.00 3.86
4577 7522 2.102588 CCGGATAGTTTTCGTCCCTCAT 59.897 50.000 0.00 0.00 0.00 2.90
4578 7523 3.123804 CGGATAGTTTTCGTCCCTCATG 58.876 50.000 0.00 0.00 0.00 3.07
4579 7524 2.872858 GGATAGTTTTCGTCCCTCATGC 59.127 50.000 0.00 0.00 0.00 4.06
4580 7525 2.396590 TAGTTTTCGTCCCTCATGCC 57.603 50.000 0.00 0.00 0.00 4.40
4581 7526 0.673644 AGTTTTCGTCCCTCATGCCG 60.674 55.000 0.00 0.00 0.00 5.69
4582 7527 2.038269 TTTTCGTCCCTCATGCCGC 61.038 57.895 0.00 0.00 0.00 6.53
4583 7528 2.463589 TTTTCGTCCCTCATGCCGCT 62.464 55.000 0.00 0.00 0.00 5.52
4584 7529 2.463589 TTTCGTCCCTCATGCCGCTT 62.464 55.000 0.00 0.00 0.00 4.68
4585 7530 2.852495 TTCGTCCCTCATGCCGCTTC 62.852 60.000 0.00 0.00 0.00 3.86
4586 7531 2.892425 GTCCCTCATGCCGCTTCG 60.892 66.667 0.00 0.00 0.00 3.79
4598 7543 3.976758 GCTTCGGGCGGTTTTAGT 58.023 55.556 0.00 0.00 0.00 2.24
4599 7544 3.142124 GCTTCGGGCGGTTTTAGTA 57.858 52.632 0.00 0.00 0.00 1.82
4600 7545 0.723414 GCTTCGGGCGGTTTTAGTAC 59.277 55.000 0.00 0.00 0.00 2.73
4601 7546 0.994263 CTTCGGGCGGTTTTAGTACG 59.006 55.000 0.00 0.00 0.00 3.67
4605 7550 3.860717 GCGGTTTTAGTACGCGGT 58.139 55.556 12.47 0.00 43.98 5.68
4606 7551 1.417206 GCGGTTTTAGTACGCGGTG 59.583 57.895 12.47 0.00 43.98 4.94
4607 7552 1.008361 GCGGTTTTAGTACGCGGTGA 61.008 55.000 12.47 0.00 43.98 4.02
4608 7553 1.417372 CGGTTTTAGTACGCGGTGAA 58.583 50.000 12.47 0.00 0.00 3.18
4609 7554 1.994779 CGGTTTTAGTACGCGGTGAAT 59.005 47.619 12.47 0.00 0.00 2.57
4610 7555 3.178267 CGGTTTTAGTACGCGGTGAATA 58.822 45.455 12.47 0.00 0.00 1.75
4611 7556 3.241322 CGGTTTTAGTACGCGGTGAATAG 59.759 47.826 12.47 0.00 0.00 1.73
4612 7557 4.176271 GGTTTTAGTACGCGGTGAATAGT 58.824 43.478 12.47 0.00 0.00 2.12
4613 7558 5.339990 GGTTTTAGTACGCGGTGAATAGTA 58.660 41.667 12.47 0.00 0.00 1.82
4614 7559 5.804979 GGTTTTAGTACGCGGTGAATAGTAA 59.195 40.000 12.47 3.96 0.00 2.24
4615 7560 6.237569 GGTTTTAGTACGCGGTGAATAGTAAC 60.238 42.308 12.47 7.32 0.00 2.50
4616 7561 5.818136 TTAGTACGCGGTGAATAGTAACT 57.182 39.130 12.47 0.53 0.00 2.24
4617 7562 4.284378 AGTACGCGGTGAATAGTAACTC 57.716 45.455 12.47 0.00 0.00 3.01
4618 7563 2.184385 ACGCGGTGAATAGTAACTCG 57.816 50.000 12.47 0.00 0.00 4.18
4619 7564 1.739466 ACGCGGTGAATAGTAACTCGA 59.261 47.619 12.47 0.00 0.00 4.04
4620 7565 2.107178 CGCGGTGAATAGTAACTCGAC 58.893 52.381 0.00 0.00 0.00 4.20
4621 7566 2.476686 CGCGGTGAATAGTAACTCGACA 60.477 50.000 0.00 0.00 0.00 4.35
4622 7567 3.504863 GCGGTGAATAGTAACTCGACAA 58.495 45.455 0.00 0.00 0.00 3.18
4623 7568 3.922240 GCGGTGAATAGTAACTCGACAAA 59.078 43.478 0.00 0.00 0.00 2.83
4624 7569 4.201561 GCGGTGAATAGTAACTCGACAAAC 60.202 45.833 0.00 0.00 0.00 2.93
4625 7570 4.919168 CGGTGAATAGTAACTCGACAAACA 59.081 41.667 0.00 0.00 0.00 2.83
4626 7571 5.060569 CGGTGAATAGTAACTCGACAAACAG 59.939 44.000 0.00 0.00 0.00 3.16
4627 7572 5.924825 GGTGAATAGTAACTCGACAAACAGT 59.075 40.000 0.00 0.00 0.00 3.55
4628 7573 7.086376 GGTGAATAGTAACTCGACAAACAGTA 58.914 38.462 0.00 0.00 0.00 2.74
4629 7574 7.596248 GGTGAATAGTAACTCGACAAACAGTAA 59.404 37.037 0.00 0.00 0.00 2.24
4630 7575 8.971321 GTGAATAGTAACTCGACAAACAGTAAA 58.029 33.333 0.00 0.00 0.00 2.01
4631 7576 9.531942 TGAATAGTAACTCGACAAACAGTAAAA 57.468 29.630 0.00 0.00 0.00 1.52
4634 7579 7.101993 AGTAACTCGACAAACAGTAAAATCG 57.898 36.000 0.00 0.00 0.00 3.34
4635 7580 6.919662 AGTAACTCGACAAACAGTAAAATCGA 59.080 34.615 0.00 0.00 37.10 3.59
4636 7581 6.592798 AACTCGACAAACAGTAAAATCGAA 57.407 33.333 0.00 0.00 38.05 3.71
4637 7582 6.592798 ACTCGACAAACAGTAAAATCGAAA 57.407 33.333 0.00 0.00 38.05 3.46
4638 7583 7.007313 ACTCGACAAACAGTAAAATCGAAAA 57.993 32.000 0.00 0.00 38.05 2.29
4639 7584 7.465989 ACTCGACAAACAGTAAAATCGAAAAA 58.534 30.769 0.00 0.00 38.05 1.94
4680 7625 6.911484 AAAATCTGAAATTTTACAGCGTCG 57.089 33.333 0.00 0.00 34.57 5.12
4681 7626 5.856126 AATCTGAAATTTTACAGCGTCGA 57.144 34.783 0.00 0.00 34.57 4.20
4682 7627 5.856126 ATCTGAAATTTTACAGCGTCGAA 57.144 34.783 0.00 0.00 34.57 3.71
4683 7628 5.264060 TCTGAAATTTTACAGCGTCGAAG 57.736 39.130 0.00 0.00 34.57 3.79
4684 7629 4.986034 TCTGAAATTTTACAGCGTCGAAGA 59.014 37.500 1.37 0.00 34.57 2.87
4685 7630 5.464057 TCTGAAATTTTACAGCGTCGAAGAA 59.536 36.000 1.37 0.00 34.23 2.52
4686 7631 6.018588 TCTGAAATTTTACAGCGTCGAAGAAA 60.019 34.615 1.37 0.00 34.23 2.52
4687 7632 5.905181 TGAAATTTTACAGCGTCGAAGAAAC 59.095 36.000 1.37 0.00 39.69 2.78
4688 7633 5.668558 AATTTTACAGCGTCGAAGAAACT 57.331 34.783 1.37 0.00 39.69 2.66
4689 7634 4.703899 TTTTACAGCGTCGAAGAAACTC 57.296 40.909 1.37 0.00 39.69 3.01
4690 7635 3.637998 TTACAGCGTCGAAGAAACTCT 57.362 42.857 1.37 0.00 39.69 3.24
4691 7636 1.772182 ACAGCGTCGAAGAAACTCTG 58.228 50.000 1.37 2.02 39.69 3.35
4692 7637 1.063806 CAGCGTCGAAGAAACTCTGG 58.936 55.000 1.37 0.00 39.69 3.86
4693 7638 0.674534 AGCGTCGAAGAAACTCTGGT 59.325 50.000 1.37 0.00 39.69 4.00
4694 7639 0.784778 GCGTCGAAGAAACTCTGGTG 59.215 55.000 1.37 0.00 39.69 4.17
4695 7640 0.784778 CGTCGAAGAAACTCTGGTGC 59.215 55.000 0.00 0.00 39.69 5.01
4696 7641 1.865865 GTCGAAGAAACTCTGGTGCA 58.134 50.000 0.00 0.00 39.69 4.57
4697 7642 1.527311 GTCGAAGAAACTCTGGTGCAC 59.473 52.381 8.80 8.80 39.69 4.57
4698 7643 1.138069 TCGAAGAAACTCTGGTGCACA 59.862 47.619 20.43 3.92 0.00 4.57
4699 7644 2.146342 CGAAGAAACTCTGGTGCACAT 58.854 47.619 20.43 0.00 0.00 3.21
4700 7645 2.096069 CGAAGAAACTCTGGTGCACATG 60.096 50.000 20.43 10.57 0.00 3.21
4701 7646 2.936919 AGAAACTCTGGTGCACATGA 57.063 45.000 20.43 14.39 0.00 3.07
4702 7647 2.498167 AGAAACTCTGGTGCACATGAC 58.502 47.619 20.43 0.95 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 8.744008 ATAAAGACTGGTGATCGAATTATACG 57.256 34.615 0.00 0.00 0.00 3.06
29 30 5.530915 TGTTGTTCCACTTGGATAAAGACTG 59.469 40.000 0.00 0.00 44.98 3.51
73 74 9.778993 GCCATGTATATGTTCTTATATTGCTTG 57.221 33.333 0.00 0.00 32.21 4.01
76 77 7.065803 ACCGCCATGTATATGTTCTTATATTGC 59.934 37.037 0.00 0.00 32.21 3.56
166 167 5.963176 TTTGCAATTCAATACTGCAGAGA 57.037 34.783 23.35 8.26 46.08 3.10
217 218 2.623889 ACGCTGTACCATCTACCATCTC 59.376 50.000 0.00 0.00 0.00 2.75
275 283 5.573146 GCTAGCTGCTTATTTCGTCAAAAT 58.427 37.500 7.79 0.00 38.70 1.82
376 433 1.730612 GTAACAGCTTAGGCGTGGTTC 59.269 52.381 7.60 0.00 44.37 3.62
463 1661 9.136952 ACGAACTATTTTAGAACACACATACTC 57.863 33.333 0.00 0.00 0.00 2.59
464 1662 9.136952 GACGAACTATTTTAGAACACACATACT 57.863 33.333 0.00 0.00 0.00 2.12
465 1663 8.100306 CGACGAACTATTTTAGAACACACATAC 58.900 37.037 0.00 0.00 0.00 2.39
497 1695 8.713271 CGGAGGAAGCTCTAATTTATTTACATC 58.287 37.037 0.00 0.00 0.00 3.06
512 1710 1.120530 TTATGGGACGGAGGAAGCTC 58.879 55.000 0.00 0.00 0.00 4.09
514 1712 3.983044 ATATTATGGGACGGAGGAAGC 57.017 47.619 0.00 0.00 0.00 3.86
515 1713 6.628398 GCTCTTATATTATGGGACGGAGGAAG 60.628 46.154 0.00 0.00 0.00 3.46
516 1714 5.187186 GCTCTTATATTATGGGACGGAGGAA 59.813 44.000 0.00 0.00 0.00 3.36
517 1715 4.710375 GCTCTTATATTATGGGACGGAGGA 59.290 45.833 0.00 0.00 0.00 3.71
519 1717 5.661056 TGCTCTTATATTATGGGACGGAG 57.339 43.478 0.00 0.00 0.00 4.63
521 1719 6.227298 AGATGCTCTTATATTATGGGACGG 57.773 41.667 0.00 0.00 0.00 4.79
531 1729 9.634021 TCCGTCTCATAATAGATGCTCTTATAT 57.366 33.333 0.00 0.00 32.16 0.86
532 1730 9.114952 CTCCGTCTCATAATAGATGCTCTTATA 57.885 37.037 0.00 0.00 32.16 0.98
534 1732 6.375736 CCTCCGTCTCATAATAGATGCTCTTA 59.624 42.308 0.00 0.00 32.16 2.10
535 1733 5.184864 CCTCCGTCTCATAATAGATGCTCTT 59.815 44.000 0.00 0.00 32.16 2.85
537 1735 4.142271 CCCTCCGTCTCATAATAGATGCTC 60.142 50.000 0.00 0.00 32.16 4.26
538 1736 3.766591 CCCTCCGTCTCATAATAGATGCT 59.233 47.826 0.00 0.00 32.16 3.79
539 1737 3.764434 TCCCTCCGTCTCATAATAGATGC 59.236 47.826 0.00 0.00 32.16 3.91
541 1739 5.263872 ACTCCCTCCGTCTCATAATAGAT 57.736 43.478 0.00 0.00 0.00 1.98
542 1740 4.726035 ACTCCCTCCGTCTCATAATAGA 57.274 45.455 0.00 0.00 0.00 1.98
543 1741 6.896021 TTTACTCCCTCCGTCTCATAATAG 57.104 41.667 0.00 0.00 0.00 1.73
592 2017 8.674607 CATTTGTTAATCAGGGTAAGTTCTACC 58.325 37.037 0.00 0.00 36.88 3.18
634 2059 4.718940 CCCTTTTTATGGGCTGTACAAG 57.281 45.455 0.00 0.00 37.99 3.16
725 2150 0.526211 TCTATGAGTGCGTGCTCGTT 59.474 50.000 10.18 0.00 38.28 3.85
760 2189 4.643463 TGCCGTCTTGTGGTATTTTAAGA 58.357 39.130 0.00 0.00 0.00 2.10
830 2259 2.440409 GTCAATCTGTCCTGCCACAAT 58.560 47.619 0.00 0.00 0.00 2.71
871 2301 8.887036 TGTATGTGGAACTTTATATACAGCTG 57.113 34.615 13.48 13.48 38.04 4.24
898 2328 3.632604 TCGTACCAGATGAGTGGAGATTC 59.367 47.826 0.00 0.00 40.44 2.52
918 2348 1.659098 GCACCGAACTACTTGGAATCG 59.341 52.381 0.00 0.00 0.00 3.34
949 2379 7.534723 TTAGGTTCTAGTACTTGAAAGCTGA 57.465 36.000 19.21 12.59 0.00 4.26
951 2381 8.135382 TGATTAGGTTCTAGTACTTGAAAGCT 57.865 34.615 19.21 18.20 0.00 3.74
952 2382 7.492994 CCTGATTAGGTTCTAGTACTTGAAAGC 59.507 40.741 19.21 13.36 39.39 3.51
953 2383 8.934507 CCTGATTAGGTTCTAGTACTTGAAAG 57.065 38.462 19.21 11.84 39.39 2.62
1075 2511 1.889829 GTCGCCATGCTCTACCTCTAT 59.110 52.381 0.00 0.00 0.00 1.98
1083 2519 4.393155 TTGCCGTCGCCATGCTCT 62.393 61.111 0.00 0.00 0.00 4.09
1370 2806 2.762459 ATCCGCTCGTAAGCCCCA 60.762 61.111 0.00 0.00 46.34 4.96
1400 2836 1.230635 CCAGAGTGCAACCGTTCCAG 61.231 60.000 0.00 0.00 37.80 3.86
1463 2899 0.819582 CCTTCATGGCAAAGGCGATT 59.180 50.000 5.08 0.00 42.47 3.34
1499 2936 1.078709 TTGCAAGAGTATGAGCACGC 58.921 50.000 0.00 0.00 36.62 5.34
1575 3018 7.724061 GGAACCCTCTGCAAAATATTAATCCTA 59.276 37.037 0.00 0.00 0.00 2.94
1581 3024 6.495181 TGTTTGGAACCCTCTGCAAAATATTA 59.505 34.615 0.00 0.00 0.00 0.98
1644 3087 1.203225 AGGCCCCAGAAGAGCATTTTT 60.203 47.619 0.00 0.00 0.00 1.94
1729 3173 7.532571 TCGAGTTCGATAGTGTCAAATTAAGA 58.467 34.615 0.00 0.00 44.22 2.10
1873 3317 7.067421 AGACCAAGATGGATGATGAAATGAAT 58.933 34.615 2.85 0.00 40.96 2.57
2183 3627 6.366061 CCATGTATACGATGAACACGATGAAT 59.634 38.462 13.58 0.00 34.70 2.57
2196 3640 2.615447 ACGTCGTGACCATGTATACGAT 59.385 45.455 15.40 2.41 45.66 3.73
2269 3713 1.185315 AAACCGCTTCCCATCATTGG 58.815 50.000 0.00 0.00 43.23 3.16
2465 3912 3.225177 TCTACCTTAGTCCGGATCCAG 57.775 52.381 7.81 0.00 0.00 3.86
2514 3961 7.307751 GCAGCTACTTGTACATAACAGTGAAAA 60.308 37.037 7.97 0.00 39.87 2.29
2530 3977 4.276926 AGGAAAACTTTCTGCAGCTACTTG 59.723 41.667 9.47 0.00 37.35 3.16
2596 4044 6.036577 TCAGTGCACATATTGTCAGACTTA 57.963 37.500 21.04 0.00 0.00 2.24
2655 4103 0.101399 CACGGAGAGGACCTGATTCG 59.899 60.000 0.00 0.00 0.00 3.34
2813 4261 5.621635 ATCGACGATATTGAACTGAAACG 57.378 39.130 8.99 0.00 0.00 3.60
2998 4446 3.160269 CAAGAGGAGTGAAAAGCCCATT 58.840 45.455 0.00 0.00 0.00 3.16
3029 4477 5.941788 AGTACCTTTTGTGAAGTGAAGGAT 58.058 37.500 7.89 0.00 40.86 3.24
3050 4498 6.766467 GTCGGAAATGGATTGTTAGGATAAGT 59.234 38.462 0.00 0.00 0.00 2.24
3054 4502 4.881850 GTGTCGGAAATGGATTGTTAGGAT 59.118 41.667 0.00 0.00 0.00 3.24
3093 4541 7.297936 TGTAAGATTCTGAGGTCACAGTTTA 57.702 36.000 0.00 0.00 38.79 2.01
3130 4579 7.496529 TTATTGATTGGAATAGCTACAGCAC 57.503 36.000 3.70 0.00 45.16 4.40
3266 4715 1.273759 AGAGCTGATGGAAGTGCAGA 58.726 50.000 0.00 0.00 0.00 4.26
3297 4746 9.926751 CTATCATTGTGACAATGAAATGAGTAC 57.073 33.333 35.71 0.00 41.08 2.73
3425 4874 4.158209 TCATAGTACCATCCGTTCACGAAA 59.842 41.667 0.00 0.00 43.02 3.46
3477 4926 3.744426 CACTACCAAGTTAACCTTCACCG 59.256 47.826 0.88 0.00 31.97 4.94
3591 5041 1.481871 CCAGCCTTTCTGAATGCCAT 58.518 50.000 8.32 0.00 45.72 4.40
3643 5093 2.104792 CAGAGACAACACCCCAGAAGAA 59.895 50.000 0.00 0.00 0.00 2.52
3721 5171 7.994911 TGCTGGAAGAAATAGATCATTGTACAT 59.005 33.333 0.00 0.00 34.07 2.29
3754 5204 6.083098 TGTTGGATGAAAACGAATGACATT 57.917 33.333 0.00 0.00 0.00 2.71
3980 6856 7.333323 ACACTTTTGGTACCGTAGCTTATATT 58.667 34.615 7.57 0.00 0.00 1.28
4039 6916 7.904558 TCTCTCATCTGGATAAGCTTAAGAA 57.095 36.000 10.85 0.00 0.00 2.52
4071 6948 2.893424 ACTTGCCCATGTTCTCCAAAT 58.107 42.857 0.00 0.00 0.00 2.32
4099 6976 1.550072 TGTCTCATGATCCGTGAGCAA 59.450 47.619 16.43 7.54 44.47 3.91
4106 6983 1.832600 CAGACGTGTCTCATGATCCG 58.167 55.000 0.00 0.00 37.98 4.18
4120 6997 1.435515 GAGCTAGGACAGGCAGACG 59.564 63.158 0.00 0.00 0.00 4.18
4122 6999 0.396417 GAGGAGCTAGGACAGGCAGA 60.396 60.000 0.00 0.00 0.00 4.26
4259 7146 7.631510 TCCATTGGTATCTTCTGGAATGATA 57.368 36.000 1.86 0.00 33.19 2.15
4299 7239 1.000717 CGGGGCAGTAAAAACCAACAG 60.001 52.381 0.00 0.00 0.00 3.16
4318 7258 3.399330 TGTTCCTTCCTAACTCAAAGCG 58.601 45.455 0.00 0.00 0.00 4.68
4326 7266 4.451435 CCTTCTCGTTTGTTCCTTCCTAAC 59.549 45.833 0.00 0.00 0.00 2.34
4335 7275 1.206831 GCCGCCTTCTCGTTTGTTC 59.793 57.895 0.00 0.00 0.00 3.18
4396 7341 7.761651 ATGAAGAAAGAAGAACAACAAAAGC 57.238 32.000 0.00 0.00 0.00 3.51
4437 7382 9.040939 CGGAAAAGTTCAAGGACAAAAATTATT 57.959 29.630 0.00 0.00 0.00 1.40
4438 7383 8.417884 TCGGAAAAGTTCAAGGACAAAAATTAT 58.582 29.630 0.00 0.00 0.00 1.28
4439 7384 7.773149 TCGGAAAAGTTCAAGGACAAAAATTA 58.227 30.769 0.00 0.00 0.00 1.40
4440 7385 6.635755 TCGGAAAAGTTCAAGGACAAAAATT 58.364 32.000 0.00 0.00 0.00 1.82
4441 7386 6.096282 TCTCGGAAAAGTTCAAGGACAAAAAT 59.904 34.615 0.00 0.00 0.00 1.82
4442 7387 5.416326 TCTCGGAAAAGTTCAAGGACAAAAA 59.584 36.000 0.00 0.00 0.00 1.94
4443 7388 4.944930 TCTCGGAAAAGTTCAAGGACAAAA 59.055 37.500 0.00 0.00 0.00 2.44
4444 7389 4.519213 TCTCGGAAAAGTTCAAGGACAAA 58.481 39.130 0.00 0.00 0.00 2.83
4445 7390 4.127171 CTCTCGGAAAAGTTCAAGGACAA 58.873 43.478 0.00 0.00 0.00 3.18
4446 7391 3.134081 ACTCTCGGAAAAGTTCAAGGACA 59.866 43.478 0.00 0.00 0.00 4.02
4447 7392 3.729966 ACTCTCGGAAAAGTTCAAGGAC 58.270 45.455 0.00 0.00 0.00 3.85
4448 7393 4.417426 AACTCTCGGAAAAGTTCAAGGA 57.583 40.909 0.84 0.00 29.89 3.36
4449 7394 5.989777 TCTAAACTCTCGGAAAAGTTCAAGG 59.010 40.000 6.05 0.18 34.71 3.61
4450 7395 7.478520 TTCTAAACTCTCGGAAAAGTTCAAG 57.521 36.000 6.05 7.14 34.71 3.02
4451 7396 7.201670 GGTTTCTAAACTCTCGGAAAAGTTCAA 60.202 37.037 5.62 0.00 38.89 2.69
4452 7397 6.259387 GGTTTCTAAACTCTCGGAAAAGTTCA 59.741 38.462 5.62 0.00 38.89 3.18
4453 7398 6.563567 CGGTTTCTAAACTCTCGGAAAAGTTC 60.564 42.308 5.62 0.00 38.89 3.01
4454 7399 5.235831 CGGTTTCTAAACTCTCGGAAAAGTT 59.764 40.000 5.62 0.84 38.89 2.66
4455 7400 4.748600 CGGTTTCTAAACTCTCGGAAAAGT 59.251 41.667 5.62 0.00 38.89 2.66
4456 7401 4.748600 ACGGTTTCTAAACTCTCGGAAAAG 59.251 41.667 5.62 0.00 38.89 2.27
4457 7402 4.696455 ACGGTTTCTAAACTCTCGGAAAA 58.304 39.130 5.62 0.00 38.89 2.29
4458 7403 4.301628 GACGGTTTCTAAACTCTCGGAAA 58.698 43.478 5.62 0.00 38.89 3.13
4459 7404 3.305608 GGACGGTTTCTAAACTCTCGGAA 60.306 47.826 5.62 0.00 38.89 4.30
4460 7405 2.229784 GGACGGTTTCTAAACTCTCGGA 59.770 50.000 5.62 0.00 38.89 4.55
4461 7406 2.603953 GGACGGTTTCTAAACTCTCGG 58.396 52.381 5.62 0.00 38.89 4.63
4462 7407 2.230750 AGGGACGGTTTCTAAACTCTCG 59.769 50.000 5.62 3.93 38.89 4.04
4463 7408 3.257624 TGAGGGACGGTTTCTAAACTCTC 59.742 47.826 5.62 0.00 38.89 3.20
4464 7409 3.236896 TGAGGGACGGTTTCTAAACTCT 58.763 45.455 5.62 0.00 38.89 3.24
4465 7410 3.672767 TGAGGGACGGTTTCTAAACTC 57.327 47.619 5.62 0.00 38.89 3.01
4466 7411 3.390311 AGTTGAGGGACGGTTTCTAAACT 59.610 43.478 5.62 7.97 38.89 2.66
4467 7412 3.736720 AGTTGAGGGACGGTTTCTAAAC 58.263 45.455 0.00 0.00 38.17 2.01
4468 7413 3.553508 CGAGTTGAGGGACGGTTTCTAAA 60.554 47.826 0.00 0.00 0.00 1.85
4469 7414 2.029649 CGAGTTGAGGGACGGTTTCTAA 60.030 50.000 0.00 0.00 0.00 2.10
4470 7415 1.542915 CGAGTTGAGGGACGGTTTCTA 59.457 52.381 0.00 0.00 0.00 2.10
4471 7416 0.317479 CGAGTTGAGGGACGGTTTCT 59.683 55.000 0.00 0.00 0.00 2.52
4472 7417 0.316204 TCGAGTTGAGGGACGGTTTC 59.684 55.000 0.00 0.00 0.00 2.78
4473 7418 0.754472 TTCGAGTTGAGGGACGGTTT 59.246 50.000 0.00 0.00 0.00 3.27
4474 7419 0.754472 TTTCGAGTTGAGGGACGGTT 59.246 50.000 0.00 0.00 0.00 4.44
4475 7420 0.033090 GTTTCGAGTTGAGGGACGGT 59.967 55.000 0.00 0.00 0.00 4.83
4476 7421 0.669625 GGTTTCGAGTTGAGGGACGG 60.670 60.000 0.00 0.00 0.00 4.79
4477 7422 1.007336 CGGTTTCGAGTTGAGGGACG 61.007 60.000 0.00 0.00 39.00 4.79
4478 7423 0.669625 CCGGTTTCGAGTTGAGGGAC 60.670 60.000 0.00 0.00 39.00 4.46
4479 7424 0.828762 TCCGGTTTCGAGTTGAGGGA 60.829 55.000 0.00 0.00 39.00 4.20
4480 7425 0.249398 ATCCGGTTTCGAGTTGAGGG 59.751 55.000 0.00 0.00 39.00 4.30
4481 7426 2.165845 ACTATCCGGTTTCGAGTTGAGG 59.834 50.000 0.00 0.00 39.00 3.86
4482 7427 3.505464 ACTATCCGGTTTCGAGTTGAG 57.495 47.619 0.00 0.00 39.00 3.02
4483 7428 3.947910 AACTATCCGGTTTCGAGTTGA 57.052 42.857 0.00 0.00 39.00 3.18
4484 7429 4.433805 CGAAAACTATCCGGTTTCGAGTTG 60.434 45.833 24.61 2.58 38.30 3.16
4485 7430 3.676646 CGAAAACTATCCGGTTTCGAGTT 59.323 43.478 24.61 14.42 38.30 3.01
4486 7431 3.248266 CGAAAACTATCCGGTTTCGAGT 58.752 45.455 24.61 9.97 38.30 4.18
4487 7432 3.248266 ACGAAAACTATCCGGTTTCGAG 58.752 45.455 31.42 14.07 38.30 4.04
4488 7433 3.244976 GACGAAAACTATCCGGTTTCGA 58.755 45.455 31.42 3.09 38.30 3.71
4489 7434 2.346545 GGACGAAAACTATCCGGTTTCG 59.653 50.000 26.16 26.16 38.30 3.46
4490 7435 2.674852 GGGACGAAAACTATCCGGTTTC 59.325 50.000 0.00 2.60 38.30 2.78
4491 7436 2.303890 AGGGACGAAAACTATCCGGTTT 59.696 45.455 0.00 0.00 40.59 3.27
4492 7437 1.904537 AGGGACGAAAACTATCCGGTT 59.095 47.619 0.00 0.00 32.90 4.44
4493 7438 1.479730 GAGGGACGAAAACTATCCGGT 59.520 52.381 0.00 0.00 32.90 5.28
4494 7439 1.479323 TGAGGGACGAAAACTATCCGG 59.521 52.381 0.00 0.00 32.90 5.14
4495 7440 2.928116 GTTGAGGGACGAAAACTATCCG 59.072 50.000 0.00 0.00 32.90 4.18
4496 7441 4.203654 AGTTGAGGGACGAAAACTATCC 57.796 45.455 0.00 0.00 31.26 2.59
4498 7443 6.540438 TGATAGTTGAGGGACGAAAACTAT 57.460 37.500 6.62 6.62 44.51 2.12
4499 7444 5.988310 TGATAGTTGAGGGACGAAAACTA 57.012 39.130 0.00 0.00 38.93 2.24
4500 7445 4.884668 TGATAGTTGAGGGACGAAAACT 57.115 40.909 0.00 0.00 36.80 2.66
4501 7446 5.934935 TTTGATAGTTGAGGGACGAAAAC 57.065 39.130 0.00 0.00 0.00 2.43
4502 7447 5.239963 GGTTTTGATAGTTGAGGGACGAAAA 59.760 40.000 0.00 0.00 0.00 2.29
4503 7448 4.758165 GGTTTTGATAGTTGAGGGACGAAA 59.242 41.667 0.00 0.00 0.00 3.46
4504 7449 4.202377 TGGTTTTGATAGTTGAGGGACGAA 60.202 41.667 0.00 0.00 0.00 3.85
4505 7450 3.325425 TGGTTTTGATAGTTGAGGGACGA 59.675 43.478 0.00 0.00 0.00 4.20
4506 7451 3.670625 TGGTTTTGATAGTTGAGGGACG 58.329 45.455 0.00 0.00 0.00 4.79
4507 7452 4.906618 TCTGGTTTTGATAGTTGAGGGAC 58.093 43.478 0.00 0.00 0.00 4.46
4508 7453 5.779241 ATCTGGTTTTGATAGTTGAGGGA 57.221 39.130 0.00 0.00 0.00 4.20
4516 7461 7.201617 GGGACGAAAACTATCTGGTTTTGATAG 60.202 40.741 8.84 8.64 45.62 2.08
4517 7462 6.596497 GGGACGAAAACTATCTGGTTTTGATA 59.404 38.462 8.84 0.00 45.62 2.15
4518 7463 5.414765 GGGACGAAAACTATCTGGTTTTGAT 59.585 40.000 8.84 0.00 45.62 2.57
4519 7464 4.758165 GGGACGAAAACTATCTGGTTTTGA 59.242 41.667 8.84 0.00 45.62 2.69
4520 7465 4.760204 AGGGACGAAAACTATCTGGTTTTG 59.240 41.667 8.84 0.59 45.62 2.44
4522 7467 4.041198 TGAGGGACGAAAACTATCTGGTTT 59.959 41.667 0.00 0.00 40.59 3.27
4523 7468 3.581332 TGAGGGACGAAAACTATCTGGTT 59.419 43.478 0.00 0.00 0.00 3.67
4524 7469 3.170717 TGAGGGACGAAAACTATCTGGT 58.829 45.455 0.00 0.00 0.00 4.00
4525 7470 3.887621 TGAGGGACGAAAACTATCTGG 57.112 47.619 0.00 0.00 0.00 3.86
4526 7471 4.822026 AGTTGAGGGACGAAAACTATCTG 58.178 43.478 0.00 0.00 31.26 2.90
4527 7472 6.793505 ATAGTTGAGGGACGAAAACTATCT 57.206 37.500 0.00 0.00 40.21 1.98
4529 7474 6.540438 TGATAGTTGAGGGACGAAAACTAT 57.460 37.500 6.62 6.62 44.51 2.12
4530 7475 5.988310 TGATAGTTGAGGGACGAAAACTA 57.012 39.130 0.00 0.00 38.93 2.24
4531 7476 4.884668 TGATAGTTGAGGGACGAAAACT 57.115 40.909 0.00 0.00 36.80 2.66
4532 7477 5.934935 TTTGATAGTTGAGGGACGAAAAC 57.065 39.130 0.00 0.00 0.00 2.43
4533 7478 5.239963 GGTTTTGATAGTTGAGGGACGAAAA 59.760 40.000 0.00 0.00 0.00 2.29
4534 7479 4.758165 GGTTTTGATAGTTGAGGGACGAAA 59.242 41.667 0.00 0.00 0.00 3.46
4535 7480 4.320870 GGTTTTGATAGTTGAGGGACGAA 58.679 43.478 0.00 0.00 0.00 3.85
4536 7481 3.615592 CGGTTTTGATAGTTGAGGGACGA 60.616 47.826 0.00 0.00 0.00 4.20
4537 7482 2.671396 CGGTTTTGATAGTTGAGGGACG 59.329 50.000 0.00 0.00 0.00 4.79
4538 7483 3.007635 CCGGTTTTGATAGTTGAGGGAC 58.992 50.000 0.00 0.00 0.00 4.46
4539 7484 2.907696 TCCGGTTTTGATAGTTGAGGGA 59.092 45.455 0.00 0.00 0.00 4.20
4540 7485 3.343941 TCCGGTTTTGATAGTTGAGGG 57.656 47.619 0.00 0.00 0.00 4.30
4547 7492 6.238022 GGACGAAAACTATCCGGTTTTGATAG 60.238 42.308 0.00 3.24 45.62 2.08
4548 7493 5.581874 GGACGAAAACTATCCGGTTTTGATA 59.418 40.000 0.00 0.00 45.62 2.15
4549 7494 4.393990 GGACGAAAACTATCCGGTTTTGAT 59.606 41.667 0.00 0.00 45.62 2.57
4550 7495 3.747529 GGACGAAAACTATCCGGTTTTGA 59.252 43.478 0.00 0.00 45.62 2.69
4551 7496 3.120095 GGGACGAAAACTATCCGGTTTTG 60.120 47.826 0.00 0.33 45.62 2.44
4553 7498 2.303890 AGGGACGAAAACTATCCGGTTT 59.696 45.455 0.00 0.00 40.59 3.27
4554 7499 1.904537 AGGGACGAAAACTATCCGGTT 59.095 47.619 0.00 0.00 32.90 4.44
4555 7500 1.479730 GAGGGACGAAAACTATCCGGT 59.520 52.381 0.00 0.00 32.90 5.28
4556 7501 1.479323 TGAGGGACGAAAACTATCCGG 59.521 52.381 0.00 0.00 32.90 5.14
4557 7502 2.953466 TGAGGGACGAAAACTATCCG 57.047 50.000 0.00 0.00 32.90 4.18
4558 7503 2.872858 GCATGAGGGACGAAAACTATCC 59.127 50.000 0.00 0.00 0.00 2.59
4559 7504 2.872858 GGCATGAGGGACGAAAACTATC 59.127 50.000 0.00 0.00 0.00 2.08
4560 7505 2.741878 CGGCATGAGGGACGAAAACTAT 60.742 50.000 0.00 0.00 43.61 2.12
4561 7506 1.404986 CGGCATGAGGGACGAAAACTA 60.405 52.381 0.00 0.00 43.61 2.24
4562 7507 0.673644 CGGCATGAGGGACGAAAACT 60.674 55.000 0.00 0.00 43.61 2.66
4563 7508 1.794222 CGGCATGAGGGACGAAAAC 59.206 57.895 0.00 0.00 43.61 2.43
4564 7509 2.038269 GCGGCATGAGGGACGAAAA 61.038 57.895 0.00 0.00 43.61 2.29
4565 7510 2.435938 GCGGCATGAGGGACGAAA 60.436 61.111 0.00 0.00 43.61 3.46
4566 7511 2.852495 GAAGCGGCATGAGGGACGAA 62.852 60.000 1.45 0.00 43.61 3.85
4567 7512 3.371097 GAAGCGGCATGAGGGACGA 62.371 63.158 1.45 0.00 43.61 4.20
4568 7513 2.892425 GAAGCGGCATGAGGGACG 60.892 66.667 1.45 0.00 43.80 4.79
4569 7514 2.892425 CGAAGCGGCATGAGGGAC 60.892 66.667 1.45 0.00 0.00 4.46
4570 7515 4.161295 CCGAAGCGGCATGAGGGA 62.161 66.667 1.45 0.00 41.17 4.20
4581 7526 0.723414 GTACTAAAACCGCCCGAAGC 59.277 55.000 0.00 0.00 38.52 3.86
4582 7527 0.994263 CGTACTAAAACCGCCCGAAG 59.006 55.000 0.00 0.00 0.00 3.79
4583 7528 1.013524 GCGTACTAAAACCGCCCGAA 61.014 55.000 0.00 0.00 41.50 4.30
4584 7529 1.445926 GCGTACTAAAACCGCCCGA 60.446 57.895 0.00 0.00 41.50 5.14
4585 7530 2.791260 CGCGTACTAAAACCGCCCG 61.791 63.158 0.00 0.00 44.29 6.13
4586 7531 2.455291 CCGCGTACTAAAACCGCCC 61.455 63.158 4.92 0.00 44.29 6.13
4587 7532 1.737735 ACCGCGTACTAAAACCGCC 60.738 57.895 4.92 0.00 44.29 6.13
4588 7533 1.008361 TCACCGCGTACTAAAACCGC 61.008 55.000 4.92 0.00 43.74 5.68
4589 7534 1.417372 TTCACCGCGTACTAAAACCG 58.583 50.000 4.92 0.00 0.00 4.44
4590 7535 4.176271 ACTATTCACCGCGTACTAAAACC 58.824 43.478 4.92 0.00 0.00 3.27
4591 7536 6.528072 AGTTACTATTCACCGCGTACTAAAAC 59.472 38.462 4.92 0.00 0.00 2.43
4592 7537 6.620678 AGTTACTATTCACCGCGTACTAAAA 58.379 36.000 4.92 0.00 0.00 1.52
4593 7538 6.194796 AGTTACTATTCACCGCGTACTAAA 57.805 37.500 4.92 0.00 0.00 1.85
4594 7539 5.502382 CGAGTTACTATTCACCGCGTACTAA 60.502 44.000 4.92 0.00 0.00 2.24
4595 7540 4.025730 CGAGTTACTATTCACCGCGTACTA 60.026 45.833 4.92 0.00 0.00 1.82
4596 7541 3.242543 CGAGTTACTATTCACCGCGTACT 60.243 47.826 4.92 0.00 0.00 2.73
4597 7542 3.031812 CGAGTTACTATTCACCGCGTAC 58.968 50.000 4.92 0.00 0.00 3.67
4598 7543 2.935849 TCGAGTTACTATTCACCGCGTA 59.064 45.455 4.92 0.00 0.00 4.42
4599 7544 1.739466 TCGAGTTACTATTCACCGCGT 59.261 47.619 4.92 0.00 0.00 6.01
4600 7545 2.107178 GTCGAGTTACTATTCACCGCG 58.893 52.381 0.00 0.00 0.00 6.46
4601 7546 3.141002 TGTCGAGTTACTATTCACCGC 57.859 47.619 0.00 0.00 0.00 5.68
4602 7547 4.919168 TGTTTGTCGAGTTACTATTCACCG 59.081 41.667 0.00 0.00 0.00 4.94
4603 7548 5.924825 ACTGTTTGTCGAGTTACTATTCACC 59.075 40.000 0.00 0.00 0.00 4.02
4604 7549 8.511465 TTACTGTTTGTCGAGTTACTATTCAC 57.489 34.615 0.00 0.00 0.00 3.18
4605 7550 9.531942 TTTTACTGTTTGTCGAGTTACTATTCA 57.468 29.630 0.00 0.00 0.00 2.57
4608 7553 8.857216 CGATTTTACTGTTTGTCGAGTTACTAT 58.143 33.333 0.00 0.00 0.00 2.12
4609 7554 8.075574 TCGATTTTACTGTTTGTCGAGTTACTA 58.924 33.333 0.00 0.00 33.73 1.82
4610 7555 6.919662 TCGATTTTACTGTTTGTCGAGTTACT 59.080 34.615 0.00 0.00 33.73 2.24
4611 7556 7.097342 TCGATTTTACTGTTTGTCGAGTTAC 57.903 36.000 0.00 0.00 33.73 2.50
4612 7557 7.697352 TTCGATTTTACTGTTTGTCGAGTTA 57.303 32.000 0.00 0.00 38.99 2.24
4613 7558 6.592798 TTCGATTTTACTGTTTGTCGAGTT 57.407 33.333 0.00 0.00 38.99 3.01
4614 7559 6.592798 TTTCGATTTTACTGTTTGTCGAGT 57.407 33.333 0.00 0.00 38.99 4.18
4615 7560 7.886191 TTTTTCGATTTTACTGTTTGTCGAG 57.114 32.000 0.00 0.00 38.99 4.04
4656 7601 7.136119 TCGACGCTGTAAAATTTCAGATTTTT 58.864 30.769 10.29 0.00 33.73 1.94
4657 7602 6.664515 TCGACGCTGTAAAATTTCAGATTTT 58.335 32.000 10.29 2.74 35.62 1.82
4658 7603 6.236017 TCGACGCTGTAAAATTTCAGATTT 57.764 33.333 10.29 0.00 34.02 2.17
4659 7604 5.856126 TCGACGCTGTAAAATTTCAGATT 57.144 34.783 10.29 0.00 34.02 2.40
4660 7605 5.637810 TCTTCGACGCTGTAAAATTTCAGAT 59.362 36.000 10.29 0.00 34.02 2.90
4661 7606 4.986034 TCTTCGACGCTGTAAAATTTCAGA 59.014 37.500 10.29 0.00 34.02 3.27
4662 7607 5.264060 TCTTCGACGCTGTAAAATTTCAG 57.736 39.130 3.15 3.15 35.12 3.02
4663 7608 5.660629 TTCTTCGACGCTGTAAAATTTCA 57.339 34.783 0.00 0.00 0.00 2.69
4664 7609 6.134061 AGTTTCTTCGACGCTGTAAAATTTC 58.866 36.000 0.00 0.00 0.00 2.17
4665 7610 6.018180 AGAGTTTCTTCGACGCTGTAAAATTT 60.018 34.615 0.00 0.00 0.00 1.82
4666 7611 5.465724 AGAGTTTCTTCGACGCTGTAAAATT 59.534 36.000 0.00 0.00 0.00 1.82
4667 7612 4.989168 AGAGTTTCTTCGACGCTGTAAAAT 59.011 37.500 0.00 0.00 0.00 1.82
4668 7613 4.208460 CAGAGTTTCTTCGACGCTGTAAAA 59.792 41.667 0.00 0.00 39.24 1.52
4669 7614 3.734231 CAGAGTTTCTTCGACGCTGTAAA 59.266 43.478 0.00 0.00 39.24 2.01
4670 7615 3.305964 CAGAGTTTCTTCGACGCTGTAA 58.694 45.455 0.00 0.00 39.24 2.41
4671 7616 2.351447 CCAGAGTTTCTTCGACGCTGTA 60.351 50.000 7.11 0.00 41.48 2.74
4672 7617 1.603172 CCAGAGTTTCTTCGACGCTGT 60.603 52.381 7.11 0.00 41.48 4.40
4673 7618 1.063806 CCAGAGTTTCTTCGACGCTG 58.936 55.000 1.73 1.73 42.32 5.18
4674 7619 0.674534 ACCAGAGTTTCTTCGACGCT 59.325 50.000 0.00 0.00 0.00 5.07
4675 7620 0.784778 CACCAGAGTTTCTTCGACGC 59.215 55.000 0.00 0.00 0.00 5.19
4676 7621 0.784778 GCACCAGAGTTTCTTCGACG 59.215 55.000 0.00 0.00 0.00 5.12
4677 7622 1.527311 GTGCACCAGAGTTTCTTCGAC 59.473 52.381 5.22 0.00 0.00 4.20
4678 7623 1.138069 TGTGCACCAGAGTTTCTTCGA 59.862 47.619 15.69 0.00 0.00 3.71
4679 7624 1.581934 TGTGCACCAGAGTTTCTTCG 58.418 50.000 15.69 0.00 0.00 3.79
4680 7625 3.058639 GTCATGTGCACCAGAGTTTCTTC 60.059 47.826 15.69 0.00 0.00 2.87
4681 7626 2.880890 GTCATGTGCACCAGAGTTTCTT 59.119 45.455 15.69 0.00 0.00 2.52
4682 7627 2.498167 GTCATGTGCACCAGAGTTTCT 58.502 47.619 15.69 0.00 0.00 2.52
4683 7628 2.977405 GTCATGTGCACCAGAGTTTC 57.023 50.000 15.69 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.