Multiple sequence alignment - TraesCS4A01G226300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G226300 chr4A 100.000 5189 0 0 1 5189 534527756 534522568 0.000000e+00 9583
1 TraesCS4A01G226300 chr4D 93.096 1941 91 21 2493 4404 62481328 62483254 0.000000e+00 2802
2 TraesCS4A01G226300 chr4D 95.382 996 29 6 717 1707 62479528 62480511 0.000000e+00 1568
3 TraesCS4A01G226300 chr4D 87.765 613 70 5 4564 5174 132241607 132242216 0.000000e+00 712
4 TraesCS4A01G226300 chr4D 87.367 562 68 3 4533 5093 485676662 485676103 4.380000e-180 641
5 TraesCS4A01G226300 chr4B 92.104 1963 86 23 2493 4404 89504189 89502245 0.000000e+00 2702
6 TraesCS4A01G226300 chr4B 92.922 989 38 12 720 1708 89505920 89504964 0.000000e+00 1410
7 TraesCS4A01G226300 chr5A 93.445 656 41 2 1 654 687651445 687650790 0.000000e+00 972
8 TraesCS4A01G226300 chr5D 92.649 653 43 2 4 654 434431851 434431202 0.000000e+00 935
9 TraesCS4A01G226300 chr5D 88.619 659 64 9 6 654 495305497 495306154 0.000000e+00 791
10 TraesCS4A01G226300 chr5D 84.234 685 91 10 4517 5187 495134882 495134201 0.000000e+00 651
11 TraesCS4A01G226300 chr5D 84.591 623 86 9 4518 5136 434291095 434290479 1.240000e-170 610
12 TraesCS4A01G226300 chr5B 91.629 657 49 5 1 654 460672503 460673156 0.000000e+00 904
13 TraesCS4A01G226300 chr5B 89.308 636 62 6 22 654 589800185 589800817 0.000000e+00 793
14 TraesCS4A01G226300 chr6B 90.396 656 57 5 1 654 658661498 658660847 0.000000e+00 857
15 TraesCS4A01G226300 chr7D 89.666 658 56 9 1 654 566565682 566565033 0.000000e+00 828
16 TraesCS4A01G226300 chr7D 88.717 647 67 5 1 645 161454690 161455332 0.000000e+00 785
17 TraesCS4A01G226300 chr7D 88.351 661 68 6 1 654 603121876 603121218 0.000000e+00 785
18 TraesCS4A01G226300 chr3B 85.479 668 82 9 4525 5187 240280343 240281000 0.000000e+00 682
19 TraesCS4A01G226300 chr1A 85.590 576 78 4 4525 5100 290331869 290332439 2.670000e-167 599
20 TraesCS4A01G226300 chr6D 86.137 541 66 6 4525 5064 363245243 363244711 4.510000e-160 575
21 TraesCS4A01G226300 chr1D 84.201 576 88 3 4523 5097 223376693 223377266 1.630000e-154 556
22 TraesCS4A01G226300 chr1D 83.826 575 84 9 4534 5104 223338595 223339164 5.910000e-149 538
23 TraesCS4A01G226300 chr3D 77.005 374 66 12 4407 4778 381003933 381004288 4.100000e-46 196


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G226300 chr4A 534522568 534527756 5188 True 9583 9583 100.000 1 5189 1 chr4A.!!$R1 5188
1 TraesCS4A01G226300 chr4D 62479528 62483254 3726 False 2185 2802 94.239 717 4404 2 chr4D.!!$F2 3687
2 TraesCS4A01G226300 chr4D 132241607 132242216 609 False 712 712 87.765 4564 5174 1 chr4D.!!$F1 610
3 TraesCS4A01G226300 chr4D 485676103 485676662 559 True 641 641 87.367 4533 5093 1 chr4D.!!$R1 560
4 TraesCS4A01G226300 chr4B 89502245 89505920 3675 True 2056 2702 92.513 720 4404 2 chr4B.!!$R1 3684
5 TraesCS4A01G226300 chr5A 687650790 687651445 655 True 972 972 93.445 1 654 1 chr5A.!!$R1 653
6 TraesCS4A01G226300 chr5D 434431202 434431851 649 True 935 935 92.649 4 654 1 chr5D.!!$R2 650
7 TraesCS4A01G226300 chr5D 495305497 495306154 657 False 791 791 88.619 6 654 1 chr5D.!!$F1 648
8 TraesCS4A01G226300 chr5D 495134201 495134882 681 True 651 651 84.234 4517 5187 1 chr5D.!!$R3 670
9 TraesCS4A01G226300 chr5D 434290479 434291095 616 True 610 610 84.591 4518 5136 1 chr5D.!!$R1 618
10 TraesCS4A01G226300 chr5B 460672503 460673156 653 False 904 904 91.629 1 654 1 chr5B.!!$F1 653
11 TraesCS4A01G226300 chr5B 589800185 589800817 632 False 793 793 89.308 22 654 1 chr5B.!!$F2 632
12 TraesCS4A01G226300 chr6B 658660847 658661498 651 True 857 857 90.396 1 654 1 chr6B.!!$R1 653
13 TraesCS4A01G226300 chr7D 566565033 566565682 649 True 828 828 89.666 1 654 1 chr7D.!!$R1 653
14 TraesCS4A01G226300 chr7D 161454690 161455332 642 False 785 785 88.717 1 645 1 chr7D.!!$F1 644
15 TraesCS4A01G226300 chr7D 603121218 603121876 658 True 785 785 88.351 1 654 1 chr7D.!!$R2 653
16 TraesCS4A01G226300 chr3B 240280343 240281000 657 False 682 682 85.479 4525 5187 1 chr3B.!!$F1 662
17 TraesCS4A01G226300 chr1A 290331869 290332439 570 False 599 599 85.590 4525 5100 1 chr1A.!!$F1 575
18 TraesCS4A01G226300 chr6D 363244711 363245243 532 True 575 575 86.137 4525 5064 1 chr6D.!!$R1 539
19 TraesCS4A01G226300 chr1D 223376693 223377266 573 False 556 556 84.201 4523 5097 1 chr1D.!!$F2 574
20 TraesCS4A01G226300 chr1D 223338595 223339164 569 False 538 538 83.826 4534 5104 1 chr1D.!!$F1 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
715 735 0.036732 TGAAGCAAATGAGCCCTCGT 59.963 50.0 0.0 0.0 34.23 4.18 F
1855 1879 0.110486 TTGGGGGCTCACAAAGTCTC 59.890 55.0 0.0 0.0 0.00 3.36 F
2509 2802 0.179018 GGGTGCAAGCAGTATAGGGG 60.179 60.0 0.0 0.0 34.77 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2525 2818 0.034756 TAGTGGCACGTTCAGCACAT 59.965 50.000 12.71 0.0 0.0 3.21 R
3850 4202 1.377856 GAGCTCCTTGAAGCACCCC 60.378 63.158 0.87 0.0 45.0 4.95 R
4469 4827 0.032952 CGGTGAAGGGAAACGTGAGA 59.967 55.000 0.00 0.0 0.0 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 44 1.756950 CGGGCCTAGTGTGCTCCTA 60.757 63.158 0.84 0.00 0.00 2.94
92 100 3.003763 GAGGTTGAGCCCTCCCGT 61.004 66.667 0.00 0.00 44.49 5.28
109 117 2.743538 TGTGCTGACGATGCTGCC 60.744 61.111 0.00 0.00 32.49 4.85
341 350 2.602267 TTCCTGAAGGGCGTCCGA 60.602 61.111 0.00 0.00 38.33 4.55
344 353 3.068691 CTGAAGGGCGTCCGAGGA 61.069 66.667 0.00 0.00 38.33 3.71
398 409 2.979676 CCCTTTGCAGCAGCGTCA 60.980 61.111 0.00 0.00 46.23 4.35
432 443 5.313712 GTCCCTTCTTGAAGGTGTTGATTA 58.686 41.667 23.12 1.48 38.28 1.75
485 496 1.945354 GAGATCTCCGGTGGACGCAA 61.945 60.000 12.00 0.00 42.52 4.85
595 608 2.281484 GTGCTGCTTCCGTCCCAA 60.281 61.111 0.00 0.00 0.00 4.12
617 633 2.034179 CACCTATCGTTGGCTGTATCGA 59.966 50.000 0.00 0.00 36.77 3.59
625 645 2.747446 GTTGGCTGTATCGATTGGTTGT 59.253 45.455 1.71 0.00 0.00 3.32
648 668 4.769859 TTGTAATACAAAGCGGGGAAAC 57.230 40.909 2.97 0.00 34.76 2.78
666 686 2.755952 ACCCTTTCCCATAGGATTGC 57.244 50.000 0.00 0.00 43.54 3.56
667 687 1.929494 ACCCTTTCCCATAGGATTGCA 59.071 47.619 0.00 0.00 43.54 4.08
668 688 2.314549 ACCCTTTCCCATAGGATTGCAA 59.685 45.455 0.00 0.00 43.54 4.08
669 689 3.051880 ACCCTTTCCCATAGGATTGCAAT 60.052 43.478 12.83 12.83 43.54 3.56
670 690 3.969312 CCCTTTCCCATAGGATTGCAATT 59.031 43.478 14.33 0.55 43.54 2.32
671 691 4.039609 CCCTTTCCCATAGGATTGCAATTC 59.960 45.833 14.33 12.11 43.54 2.17
672 692 4.897670 CCTTTCCCATAGGATTGCAATTCT 59.102 41.667 23.59 23.59 43.54 2.40
673 693 5.010415 CCTTTCCCATAGGATTGCAATTCTC 59.990 44.000 23.77 6.75 43.54 2.87
674 694 5.393068 TTCCCATAGGATTGCAATTCTCT 57.607 39.130 23.77 11.71 43.54 3.10
675 695 4.722220 TCCCATAGGATTGCAATTCTCTG 58.278 43.478 23.77 22.16 37.19 3.35
676 696 3.825014 CCCATAGGATTGCAATTCTCTGG 59.175 47.826 31.79 31.79 37.78 3.86
677 697 4.446745 CCCATAGGATTGCAATTCTCTGGA 60.447 45.833 36.73 18.74 39.47 3.86
678 698 5.135383 CCATAGGATTGCAATTCTCTGGAA 58.865 41.667 33.85 15.90 39.47 3.53
679 699 5.595542 CCATAGGATTGCAATTCTCTGGAAA 59.404 40.000 33.85 15.26 39.47 3.13
680 700 6.267014 CCATAGGATTGCAATTCTCTGGAAAT 59.733 38.462 33.85 16.64 39.47 2.17
681 701 7.201974 CCATAGGATTGCAATTCTCTGGAAATT 60.202 37.037 33.85 10.15 39.47 1.82
682 702 6.218108 AGGATTGCAATTCTCTGGAAATTC 57.782 37.500 14.90 0.00 34.90 2.17
683 703 5.956563 AGGATTGCAATTCTCTGGAAATTCT 59.043 36.000 14.90 0.00 34.90 2.40
684 704 7.121382 AGGATTGCAATTCTCTGGAAATTCTA 58.879 34.615 14.90 0.00 34.90 2.10
685 705 7.783596 AGGATTGCAATTCTCTGGAAATTCTAT 59.216 33.333 14.90 0.00 34.90 1.98
686 706 9.071276 GGATTGCAATTCTCTGGAAATTCTATA 57.929 33.333 14.33 0.00 34.90 1.31
688 708 9.857656 ATTGCAATTCTCTGGAAATTCTATAGA 57.142 29.630 5.99 0.00 34.90 1.98
689 709 9.685276 TTGCAATTCTCTGGAAATTCTATAGAA 57.315 29.630 17.32 17.32 34.90 2.10
690 710 9.857656 TGCAATTCTCTGGAAATTCTATAGAAT 57.142 29.630 20.20 20.20 45.91 2.40
707 727 9.685276 TCTATAGAATTCCTTTGAAGCAAATGA 57.315 29.630 0.00 0.00 32.70 2.57
708 728 9.947669 CTATAGAATTCCTTTGAAGCAAATGAG 57.052 33.333 0.65 0.00 31.81 2.90
709 729 5.476614 AGAATTCCTTTGAAGCAAATGAGC 58.523 37.500 0.65 0.00 31.81 4.26
710 730 3.665745 TTCCTTTGAAGCAAATGAGCC 57.334 42.857 0.00 0.00 31.81 4.70
711 731 1.895131 TCCTTTGAAGCAAATGAGCCC 59.105 47.619 0.00 0.00 32.70 5.19
712 732 1.897802 CCTTTGAAGCAAATGAGCCCT 59.102 47.619 0.00 0.00 32.70 5.19
713 733 2.094338 CCTTTGAAGCAAATGAGCCCTC 60.094 50.000 0.00 0.00 32.70 4.30
714 734 1.167851 TTGAAGCAAATGAGCCCTCG 58.832 50.000 0.00 0.00 34.23 4.63
715 735 0.036732 TGAAGCAAATGAGCCCTCGT 59.963 50.000 0.00 0.00 34.23 4.18
741 761 2.193306 AATTAAGCGAGCAATTGCCG 57.807 45.000 26.45 26.61 43.38 5.69
757 777 1.092345 GCCGGAGCTGTCAAATCTCC 61.092 60.000 5.05 0.00 42.19 3.71
1002 1026 1.305633 AGCTAGTGGCAGCCTCTCA 60.306 57.895 19.53 6.00 42.84 3.27
1028 1052 2.975489 TCTCCTCCCAGAATTAGCCATC 59.025 50.000 0.00 0.00 0.00 3.51
1079 1103 2.365635 CCGTCCATCTCCCACCCT 60.366 66.667 0.00 0.00 0.00 4.34
1546 1570 1.609501 GAGGGGGAAGGGTTTTGGC 60.610 63.158 0.00 0.00 0.00 4.52
1609 1633 1.795768 TGGTGTGATCGCTCAGAAAC 58.204 50.000 7.94 0.00 30.18 2.78
1635 1659 2.041620 AGCAGATTCCCAGCTGGTAAAA 59.958 45.455 30.63 21.00 40.68 1.52
1679 1703 2.287977 TCTCTTCAGACTTCGGGTGA 57.712 50.000 0.00 0.00 0.00 4.02
1703 1727 8.139350 TGAATCATCATCATGCCTACATTTTTC 58.861 33.333 0.00 0.00 32.87 2.29
1705 1729 6.131264 TCATCATCATGCCTACATTTTTCCT 58.869 36.000 0.00 0.00 32.87 3.36
1707 1731 6.211587 TCATCATGCCTACATTTTTCCTTG 57.788 37.500 0.00 0.00 32.87 3.61
1709 1733 6.436847 TCATCATGCCTACATTTTTCCTTGAA 59.563 34.615 0.00 0.00 32.87 2.69
1711 1735 7.060383 TCATGCCTACATTTTTCCTTGAAAA 57.940 32.000 0.00 0.00 39.36 2.29
1742 1766 6.627243 ACTAGCAAAACCGATTTTAATTCCC 58.373 36.000 0.00 0.00 35.79 3.97
1743 1767 5.476091 AGCAAAACCGATTTTAATTCCCA 57.524 34.783 0.00 0.00 35.79 4.37
1744 1768 6.048732 AGCAAAACCGATTTTAATTCCCAT 57.951 33.333 0.00 0.00 35.79 4.00
1745 1769 5.874261 AGCAAAACCGATTTTAATTCCCATG 59.126 36.000 0.00 0.00 35.79 3.66
1746 1770 5.641636 GCAAAACCGATTTTAATTCCCATGT 59.358 36.000 0.00 0.00 35.79 3.21
1747 1771 6.183360 GCAAAACCGATTTTAATTCCCATGTC 60.183 38.462 0.00 0.00 35.79 3.06
1748 1772 5.592104 AACCGATTTTAATTCCCATGTCC 57.408 39.130 0.00 0.00 0.00 4.02
1749 1773 4.867086 ACCGATTTTAATTCCCATGTCCT 58.133 39.130 0.00 0.00 0.00 3.85
1750 1774 5.269189 ACCGATTTTAATTCCCATGTCCTT 58.731 37.500 0.00 0.00 0.00 3.36
1751 1775 5.359860 ACCGATTTTAATTCCCATGTCCTTC 59.640 40.000 0.00 0.00 0.00 3.46
1752 1776 5.505654 CCGATTTTAATTCCCATGTCCTTCG 60.506 44.000 0.00 0.00 0.00 3.79
1753 1777 5.065988 CGATTTTAATTCCCATGTCCTTCGT 59.934 40.000 0.00 0.00 0.00 3.85
1754 1778 5.637006 TTTTAATTCCCATGTCCTTCGTG 57.363 39.130 0.00 0.00 0.00 4.35
1755 1779 2.879103 AATTCCCATGTCCTTCGTGT 57.121 45.000 0.00 0.00 0.00 4.49
1756 1780 2.403252 ATTCCCATGTCCTTCGTGTC 57.597 50.000 0.00 0.00 0.00 3.67
1757 1781 1.052617 TTCCCATGTCCTTCGTGTCA 58.947 50.000 0.00 0.00 0.00 3.58
1758 1782 1.275666 TCCCATGTCCTTCGTGTCAT 58.724 50.000 0.00 0.00 0.00 3.06
1759 1783 1.207089 TCCCATGTCCTTCGTGTCATC 59.793 52.381 0.00 0.00 0.00 2.92
1760 1784 1.208052 CCCATGTCCTTCGTGTCATCT 59.792 52.381 0.00 0.00 0.00 2.90
1761 1785 2.430694 CCCATGTCCTTCGTGTCATCTA 59.569 50.000 0.00 0.00 0.00 1.98
1762 1786 3.448686 CCATGTCCTTCGTGTCATCTAC 58.551 50.000 0.00 0.00 0.00 2.59
1763 1787 3.131223 CCATGTCCTTCGTGTCATCTACT 59.869 47.826 0.00 0.00 0.00 2.57
1764 1788 4.355437 CATGTCCTTCGTGTCATCTACTC 58.645 47.826 0.00 0.00 0.00 2.59
1765 1789 3.418047 TGTCCTTCGTGTCATCTACTCA 58.582 45.455 0.00 0.00 0.00 3.41
1766 1790 4.017126 TGTCCTTCGTGTCATCTACTCAT 58.983 43.478 0.00 0.00 0.00 2.90
1767 1791 4.096532 TGTCCTTCGTGTCATCTACTCATC 59.903 45.833 0.00 0.00 0.00 2.92
1768 1792 4.336993 GTCCTTCGTGTCATCTACTCATCT 59.663 45.833 0.00 0.00 0.00 2.90
1769 1793 4.576873 TCCTTCGTGTCATCTACTCATCTC 59.423 45.833 0.00 0.00 0.00 2.75
1770 1794 4.578516 CCTTCGTGTCATCTACTCATCTCT 59.421 45.833 0.00 0.00 0.00 3.10
1771 1795 5.760743 CCTTCGTGTCATCTACTCATCTCTA 59.239 44.000 0.00 0.00 0.00 2.43
1772 1796 6.261158 CCTTCGTGTCATCTACTCATCTCTAA 59.739 42.308 0.00 0.00 0.00 2.10
1773 1797 7.201741 CCTTCGTGTCATCTACTCATCTCTAAA 60.202 40.741 0.00 0.00 0.00 1.85
1774 1798 7.809546 TCGTGTCATCTACTCATCTCTAAAT 57.190 36.000 0.00 0.00 0.00 1.40
1775 1799 7.643579 TCGTGTCATCTACTCATCTCTAAATG 58.356 38.462 0.00 0.00 0.00 2.32
1776 1800 7.499232 TCGTGTCATCTACTCATCTCTAAATGA 59.501 37.037 0.00 0.00 34.55 2.57
1777 1801 7.589587 CGTGTCATCTACTCATCTCTAAATGAC 59.410 40.741 0.00 0.00 41.18 3.06
1778 1802 7.589587 GTGTCATCTACTCATCTCTAAATGACG 59.410 40.741 0.00 0.00 42.80 4.35
1779 1803 7.499232 TGTCATCTACTCATCTCTAAATGACGA 59.501 37.037 0.00 0.00 42.80 4.20
1780 1804 8.511321 GTCATCTACTCATCTCTAAATGACGAT 58.489 37.037 0.00 0.00 34.40 3.73
1781 1805 9.072375 TCATCTACTCATCTCTAAATGACGATT 57.928 33.333 0.00 0.00 32.36 3.34
1782 1806 9.689976 CATCTACTCATCTCTAAATGACGATTT 57.310 33.333 0.00 0.00 35.83 2.17
1784 1808 9.737427 TCTACTCATCTCTAAATGACGATTTTC 57.263 33.333 0.00 0.00 33.63 2.29
1785 1809 9.521503 CTACTCATCTCTAAATGACGATTTTCA 57.478 33.333 0.00 0.00 33.63 2.69
1786 1810 8.777865 ACTCATCTCTAAATGACGATTTTCAA 57.222 30.769 0.00 0.00 33.63 2.69
1787 1811 9.219603 ACTCATCTCTAAATGACGATTTTCAAA 57.780 29.630 0.00 0.00 33.63 2.69
1789 1813 9.992910 TCATCTCTAAATGACGATTTTCAAATG 57.007 29.630 0.00 0.00 33.63 2.32
1790 1814 9.778993 CATCTCTAAATGACGATTTTCAAATGT 57.221 29.630 0.00 0.00 33.63 2.71
1800 1824 9.226606 TGACGATTTTCAAATGTATCCTAAACT 57.773 29.630 0.00 0.00 0.00 2.66
1819 1843 9.372369 CCTAAACTATATATGGTCTTAGCTTGC 57.628 37.037 16.69 0.00 0.00 4.01
1820 1844 9.372369 CTAAACTATATATGGTCTTAGCTTGCC 57.628 37.037 1.78 0.00 0.00 4.52
1821 1845 7.560796 AACTATATATGGTCTTAGCTTGCCT 57.439 36.000 1.78 0.00 0.00 4.75
1822 1846 7.560796 ACTATATATGGTCTTAGCTTGCCTT 57.439 36.000 0.00 0.00 0.00 4.35
1823 1847 7.978925 ACTATATATGGTCTTAGCTTGCCTTT 58.021 34.615 0.00 0.00 0.00 3.11
1824 1848 7.880195 ACTATATATGGTCTTAGCTTGCCTTTG 59.120 37.037 0.00 0.00 0.00 2.77
1825 1849 2.656947 TGGTCTTAGCTTGCCTTTGT 57.343 45.000 0.00 0.00 0.00 2.83
1826 1850 2.504367 TGGTCTTAGCTTGCCTTTGTC 58.496 47.619 0.00 0.00 0.00 3.18
1827 1851 1.813178 GGTCTTAGCTTGCCTTTGTCC 59.187 52.381 0.00 0.00 0.00 4.02
1828 1852 1.813178 GTCTTAGCTTGCCTTTGTCCC 59.187 52.381 0.00 0.00 0.00 4.46
1829 1853 1.705186 TCTTAGCTTGCCTTTGTCCCT 59.295 47.619 0.00 0.00 0.00 4.20
1830 1854 2.108250 TCTTAGCTTGCCTTTGTCCCTT 59.892 45.455 0.00 0.00 0.00 3.95
1831 1855 3.329520 TCTTAGCTTGCCTTTGTCCCTTA 59.670 43.478 0.00 0.00 0.00 2.69
1832 1856 2.907458 AGCTTGCCTTTGTCCCTTAT 57.093 45.000 0.00 0.00 0.00 1.73
1833 1857 3.175438 AGCTTGCCTTTGTCCCTTATT 57.825 42.857 0.00 0.00 0.00 1.40
1834 1858 4.316025 AGCTTGCCTTTGTCCCTTATTA 57.684 40.909 0.00 0.00 0.00 0.98
1835 1859 4.871822 AGCTTGCCTTTGTCCCTTATTAT 58.128 39.130 0.00 0.00 0.00 1.28
1836 1860 5.272402 AGCTTGCCTTTGTCCCTTATTATT 58.728 37.500 0.00 0.00 0.00 1.40
1837 1861 5.721480 AGCTTGCCTTTGTCCCTTATTATTT 59.279 36.000 0.00 0.00 0.00 1.40
1838 1862 5.812127 GCTTGCCTTTGTCCCTTATTATTTG 59.188 40.000 0.00 0.00 0.00 2.32
1839 1863 5.930837 TGCCTTTGTCCCTTATTATTTGG 57.069 39.130 0.00 0.00 0.00 3.28
1840 1864 4.714308 TGCCTTTGTCCCTTATTATTTGGG 59.286 41.667 0.00 0.00 42.20 4.12
1841 1865 4.100963 GCCTTTGTCCCTTATTATTTGGGG 59.899 45.833 0.00 0.00 41.22 4.96
1842 1866 4.653801 CCTTTGTCCCTTATTATTTGGGGG 59.346 45.833 0.00 0.00 41.22 5.40
1843 1867 3.322191 TGTCCCTTATTATTTGGGGGC 57.678 47.619 0.00 0.00 43.36 5.80
1844 1868 2.862597 TGTCCCTTATTATTTGGGGGCT 59.137 45.455 0.00 0.00 43.44 5.19
1845 1869 3.117284 TGTCCCTTATTATTTGGGGGCTC 60.117 47.826 0.00 0.00 43.44 4.70
1846 1870 3.117284 GTCCCTTATTATTTGGGGGCTCA 60.117 47.826 0.00 0.00 40.21 4.26
1847 1871 3.117284 TCCCTTATTATTTGGGGGCTCAC 60.117 47.826 0.00 0.00 41.22 3.51
1848 1872 3.373658 CCCTTATTATTTGGGGGCTCACA 60.374 47.826 0.00 0.00 37.37 3.58
1849 1873 4.285863 CCTTATTATTTGGGGGCTCACAA 58.714 43.478 0.00 0.00 0.00 3.33
1850 1874 4.714308 CCTTATTATTTGGGGGCTCACAAA 59.286 41.667 18.09 18.09 40.44 2.83
1851 1875 5.163416 CCTTATTATTTGGGGGCTCACAAAG 60.163 44.000 20.58 4.32 39.63 2.77
1852 1876 2.990740 TATTTGGGGGCTCACAAAGT 57.009 45.000 20.58 10.39 39.63 2.66
1853 1877 1.632589 ATTTGGGGGCTCACAAAGTC 58.367 50.000 20.58 0.00 39.63 3.01
1854 1878 0.555769 TTTGGGGGCTCACAAAGTCT 59.444 50.000 10.76 0.00 33.14 3.24
1855 1879 0.110486 TTGGGGGCTCACAAAGTCTC 59.890 55.000 0.00 0.00 0.00 3.36
1856 1880 1.002011 GGGGGCTCACAAAGTCTCC 60.002 63.158 0.00 0.00 44.99 3.71
1857 1881 2.070639 GGGGCTCACAAAGTCTCCT 58.929 57.895 0.00 0.00 0.00 3.69
1858 1882 1.276622 GGGGCTCACAAAGTCTCCTA 58.723 55.000 0.00 0.00 0.00 2.94
1859 1883 1.628846 GGGGCTCACAAAGTCTCCTAA 59.371 52.381 0.00 0.00 0.00 2.69
1860 1884 2.039879 GGGGCTCACAAAGTCTCCTAAA 59.960 50.000 0.00 0.00 0.00 1.85
1861 1885 3.308473 GGGGCTCACAAAGTCTCCTAAAT 60.308 47.826 0.00 0.00 0.00 1.40
1862 1886 4.336280 GGGCTCACAAAGTCTCCTAAATT 58.664 43.478 0.00 0.00 0.00 1.82
1863 1887 5.497474 GGGCTCACAAAGTCTCCTAAATTA 58.503 41.667 0.00 0.00 0.00 1.40
1864 1888 5.586643 GGGCTCACAAAGTCTCCTAAATTAG 59.413 44.000 0.00 0.00 0.00 1.73
1865 1889 6.174049 GGCTCACAAAGTCTCCTAAATTAGT 58.826 40.000 0.00 0.00 0.00 2.24
1866 1890 7.328737 GGCTCACAAAGTCTCCTAAATTAGTA 58.671 38.462 0.00 0.00 0.00 1.82
1867 1891 7.278203 GGCTCACAAAGTCTCCTAAATTAGTAC 59.722 40.741 0.00 0.00 0.00 2.73
1868 1892 8.035984 GCTCACAAAGTCTCCTAAATTAGTACT 58.964 37.037 0.00 0.00 0.00 2.73
1869 1893 9.360093 CTCACAAAGTCTCCTAAATTAGTACTG 57.640 37.037 5.39 0.00 0.00 2.74
1870 1894 8.867097 TCACAAAGTCTCCTAAATTAGTACTGT 58.133 33.333 5.39 0.00 0.00 3.55
1897 1921 1.874872 GTAAGGCGGTGCACTTTAACA 59.125 47.619 17.98 0.00 0.00 2.41
1902 1926 1.729149 GCGGTGCACTTTAACATGAGC 60.729 52.381 17.98 3.66 0.00 4.26
1904 1928 2.413239 CGGTGCACTTTAACATGAGCTG 60.413 50.000 17.98 0.00 0.00 4.24
1997 2025 7.090319 TGGCCTCAATTATATGGATGTACTT 57.910 36.000 3.32 0.00 0.00 2.24
2162 2197 5.491982 AGAACTCATACTTTAGGGCACTTG 58.508 41.667 0.00 0.00 0.00 3.16
2169 2204 3.347216 ACTTTAGGGCACTTGCATGTAG 58.653 45.455 4.73 0.30 44.36 2.74
2172 2207 2.584835 AGGGCACTTGCATGTAGAAA 57.415 45.000 4.73 0.00 44.36 2.52
2175 2210 3.005791 AGGGCACTTGCATGTAGAAAAAC 59.994 43.478 4.73 0.00 44.36 2.43
2180 2215 5.344128 GCACTTGCATGTAGAAAAACAGATG 59.656 40.000 4.73 0.00 41.59 2.90
2188 2223 8.668353 GCATGTAGAAAAACAGATGAGATAACA 58.332 33.333 0.00 0.00 31.70 2.41
2201 2236 7.331440 CAGATGAGATAACAGTGATCTATTGGC 59.669 40.741 0.00 0.00 33.71 4.52
2203 2238 7.839680 TGAGATAACAGTGATCTATTGGCTA 57.160 36.000 0.00 0.00 33.71 3.93
2206 2241 8.663209 AGATAACAGTGATCTATTGGCTATCT 57.337 34.615 0.00 4.24 31.72 1.98
2254 2302 1.324383 GGTCACCCCAACGTTTTCAT 58.676 50.000 0.00 0.00 0.00 2.57
2257 2305 3.119637 GGTCACCCCAACGTTTTCATATG 60.120 47.826 0.00 0.00 0.00 1.78
2266 2314 7.862372 CCCCAACGTTTTCATATGATCATTTAG 59.138 37.037 14.65 4.53 0.00 1.85
2267 2315 7.379529 CCCAACGTTTTCATATGATCATTTAGC 59.620 37.037 14.65 0.00 0.00 3.09
2268 2316 7.112009 CCAACGTTTTCATATGATCATTTAGCG 59.888 37.037 14.65 11.66 0.00 4.26
2269 2317 7.246674 ACGTTTTCATATGATCATTTAGCGT 57.753 32.000 14.65 12.24 0.00 5.07
2270 2318 7.125755 ACGTTTTCATATGATCATTTAGCGTG 58.874 34.615 14.65 4.38 0.00 5.34
2286 2339 2.228822 AGCGTGAAAAAGTAGCCCATTG 59.771 45.455 0.00 0.00 0.00 2.82
2288 2341 2.556622 CGTGAAAAAGTAGCCCATTGGT 59.443 45.455 1.20 0.00 0.00 3.67
2294 2347 4.335400 AAAGTAGCCCATTGGTTGTTTG 57.665 40.909 1.20 0.00 0.00 2.93
2321 2374 8.523915 TTTTCATAGATCATGCATGGTTAGTT 57.476 30.769 25.97 9.25 34.35 2.24
2322 2375 9.625747 TTTTCATAGATCATGCATGGTTAGTTA 57.374 29.630 25.97 11.03 34.35 2.24
2323 2376 9.797642 TTTCATAGATCATGCATGGTTAGTTAT 57.202 29.630 25.97 10.51 34.35 1.89
2324 2377 8.782339 TCATAGATCATGCATGGTTAGTTATG 57.218 34.615 25.97 21.39 34.35 1.90
2329 2382 4.949238 TCATGCATGGTTAGTTATGCTTGT 59.051 37.500 25.97 2.39 46.73 3.16
2331 2384 6.071447 TCATGCATGGTTAGTTATGCTTGTTT 60.071 34.615 25.97 0.00 46.73 2.83
2332 2385 7.121907 TCATGCATGGTTAGTTATGCTTGTTTA 59.878 33.333 25.97 0.00 46.73 2.01
2334 2387 5.737290 GCATGGTTAGTTATGCTTGTTTACG 59.263 40.000 0.00 0.00 44.70 3.18
2335 2388 6.402766 GCATGGTTAGTTATGCTTGTTTACGA 60.403 38.462 0.00 0.00 44.70 3.43
2337 2390 7.493743 TGGTTAGTTATGCTTGTTTACGAAA 57.506 32.000 0.00 0.00 0.00 3.46
2339 2392 7.856894 TGGTTAGTTATGCTTGTTTACGAAAAC 59.143 33.333 0.00 0.00 44.40 2.43
2340 2393 8.071967 GGTTAGTTATGCTTGTTTACGAAAACT 58.928 33.333 0.00 0.00 44.44 2.66
2341 2394 9.442033 GTTAGTTATGCTTGTTTACGAAAACTT 57.558 29.630 0.00 0.00 44.44 2.66
2349 2402 9.141400 TGCTTGTTTACGAAAACTTAAATTTGT 57.859 25.926 0.00 0.00 44.44 2.83
2350 2403 9.403869 GCTTGTTTACGAAAACTTAAATTTGTG 57.596 29.630 0.00 0.00 44.44 3.33
2357 2410 8.831000 ACGAAAACTTAAATTTGTGTACTCAC 57.169 30.769 0.00 0.00 44.08 3.51
2358 2411 7.911727 ACGAAAACTTAAATTTGTGTACTCACC 59.088 33.333 0.00 0.00 43.26 4.02
2359 2412 7.111041 CGAAAACTTAAATTTGTGTACTCACCG 59.889 37.037 0.00 0.00 43.26 4.94
2360 2413 5.352643 ACTTAAATTTGTGTACTCACCGC 57.647 39.130 0.00 0.00 43.26 5.68
2361 2414 4.817464 ACTTAAATTTGTGTACTCACCGCA 59.183 37.500 0.00 0.00 43.26 5.69
2362 2415 5.297278 ACTTAAATTTGTGTACTCACCGCAA 59.703 36.000 0.00 0.00 43.26 4.85
2363 2416 3.619233 AATTTGTGTACTCACCGCAAC 57.381 42.857 0.00 0.00 43.26 4.17
2364 2417 2.025589 TTTGTGTACTCACCGCAACA 57.974 45.000 0.00 0.00 43.26 3.33
2365 2418 2.248280 TTGTGTACTCACCGCAACAT 57.752 45.000 0.00 0.00 43.26 2.71
2366 2419 3.388345 TTGTGTACTCACCGCAACATA 57.612 42.857 0.00 0.00 43.26 2.29
2367 2420 2.679450 TGTGTACTCACCGCAACATAC 58.321 47.619 0.00 0.00 43.26 2.39
2368 2421 2.036089 TGTGTACTCACCGCAACATACA 59.964 45.455 0.00 0.00 43.26 2.29
2369 2422 3.259064 GTGTACTCACCGCAACATACAT 58.741 45.455 0.00 0.00 38.51 2.29
2370 2423 4.082136 TGTGTACTCACCGCAACATACATA 60.082 41.667 0.00 0.00 43.26 2.29
2371 2424 5.047847 GTGTACTCACCGCAACATACATAT 58.952 41.667 0.00 0.00 38.51 1.78
2372 2425 5.047188 TGTACTCACCGCAACATACATATG 58.953 41.667 0.00 0.00 39.55 1.78
2373 2426 2.872245 ACTCACCGCAACATACATATGC 59.128 45.455 1.58 0.00 37.19 3.14
2374 2427 3.133691 CTCACCGCAACATACATATGCT 58.866 45.455 1.58 0.00 37.92 3.79
2375 2428 3.540617 TCACCGCAACATACATATGCTT 58.459 40.909 1.58 0.00 37.92 3.91
2376 2429 3.312146 TCACCGCAACATACATATGCTTG 59.688 43.478 1.58 3.29 37.92 4.01
2377 2430 3.065233 CACCGCAACATACATATGCTTGT 59.935 43.478 1.58 3.96 37.92 3.16
2441 2496 9.292195 CTTCATAAAAACTGTCTAAGGGGTAAA 57.708 33.333 0.00 0.00 0.00 2.01
2447 2502 4.500452 ACTGTCTAAGGGGTAAAGTTCCT 58.500 43.478 0.00 0.00 0.00 3.36
2490 2650 9.549509 TTCAGGAATAATTTGATCGTTTTTACG 57.450 29.630 0.00 0.00 0.00 3.18
2498 2791 2.224549 TGATCGTTTTTACGGGTGCAAG 59.775 45.455 0.00 0.00 0.00 4.01
2509 2802 0.179018 GGGTGCAAGCAGTATAGGGG 60.179 60.000 0.00 0.00 34.77 4.79
2524 2817 3.509659 GGGGGCGTTGACTTATGC 58.490 61.111 0.00 0.00 0.00 3.14
2525 2818 1.377987 GGGGGCGTTGACTTATGCA 60.378 57.895 0.00 0.00 0.00 3.96
2545 2838 0.179070 TGTGCTGAACGTGCCACTAA 60.179 50.000 4.79 0.00 0.00 2.24
2564 2860 9.683069 GCCACTAATTATGATTTGGAATAAGTG 57.317 33.333 5.36 3.48 28.52 3.16
2588 2884 4.627467 CCCTTATCTTGTTGAACTGACTCG 59.373 45.833 0.00 0.00 0.00 4.18
2662 2962 4.494484 AGGGAATAACAAAATGCTTTCGC 58.506 39.130 0.00 0.00 0.00 4.70
2796 3096 2.347490 GAGGCGCAGGGAACAGAA 59.653 61.111 10.83 0.00 0.00 3.02
2824 3127 2.571757 GGTCGACGGATGCTGTCA 59.428 61.111 9.92 0.00 39.51 3.58
2949 3256 0.612229 CACATGCAGACTCCTCCTGT 59.388 55.000 0.00 0.00 34.29 4.00
3004 3311 3.639672 TCGATGTCCACTACTACTCCA 57.360 47.619 0.00 0.00 0.00 3.86
3151 3480 7.987750 TTGACAGCTATGTTAATGTTACCAA 57.012 32.000 0.00 0.00 40.68 3.67
3203 3532 3.139077 ACGCTGAAAGTAAGGGTCAAAG 58.861 45.455 0.00 0.00 36.15 2.77
3217 3546 3.005791 GGGTCAAAGTGTCTGAATTTGGG 59.994 47.826 9.84 0.00 35.21 4.12
3231 3562 6.556874 TCTGAATTTGGGGTTAAAATGGAACT 59.443 34.615 0.00 0.00 0.00 3.01
3250 3581 5.469084 GGAACTTGTAACTAGGAACAACTGG 59.531 44.000 7.78 3.10 32.43 4.00
3307 3640 5.587388 AATGTTAATGATGAGTTGCAGGG 57.413 39.130 0.00 0.00 0.00 4.45
3565 3917 2.019408 CGCAACGTCACACCGATCA 61.019 57.895 0.00 0.00 0.00 2.92
3567 3919 1.635844 GCAACGTCACACCGATCATA 58.364 50.000 0.00 0.00 0.00 2.15
3586 3938 4.408270 TCATAGAGAAGAAAGGCAGCTGAT 59.592 41.667 20.43 1.05 0.00 2.90
3604 3956 4.549458 CTGATTGACAGCCAAAATTCGTT 58.451 39.130 0.00 0.00 39.86 3.85
3710 4062 1.817099 CTCAAGCGCTGGGTGATCC 60.817 63.158 12.58 0.00 0.00 3.36
3858 4210 3.637273 GGACTCCACGGGGTGCTT 61.637 66.667 2.12 0.00 34.93 3.91
3952 4309 7.896811 TCAAGAGGTTCACGATATAATAGCAT 58.103 34.615 0.00 0.00 0.00 3.79
4155 4513 1.112916 TGCAGAGAAGGGTGTCACGA 61.113 55.000 0.00 0.00 0.00 4.35
4161 4519 2.557490 GAGAAGGGTGTCACGAAGTAGT 59.443 50.000 0.00 0.00 41.61 2.73
4205 4563 1.747552 CGAGGGAGAGATGAAGACGGA 60.748 57.143 0.00 0.00 0.00 4.69
4212 4570 2.955660 AGAGATGAAGACGGAGATGGTC 59.044 50.000 0.00 0.00 34.62 4.02
4331 4689 8.639761 GTCCCTGTATATGTATGTATATCACCC 58.360 40.741 0.00 0.00 0.00 4.61
4342 4700 2.928801 ATATCACCCGCATGCTTGTA 57.071 45.000 17.13 6.00 0.00 2.41
4350 4708 2.486203 CCCGCATGCTTGTACTAAAACA 59.514 45.455 17.13 0.00 0.00 2.83
4359 4717 9.128107 CATGCTTGTACTAAAACAAAATCGATT 57.872 29.630 4.39 4.39 38.81 3.34
4421 4779 5.699097 TTTTTGGGATTTCTAGTTCCGTG 57.301 39.130 0.00 0.00 32.48 4.94
4422 4780 2.396590 TGGGATTTCTAGTTCCGTGC 57.603 50.000 0.00 0.00 32.48 5.34
4423 4781 1.065709 TGGGATTTCTAGTTCCGTGCC 60.066 52.381 0.00 0.00 32.48 5.01
4424 4782 1.209747 GGGATTTCTAGTTCCGTGCCT 59.790 52.381 0.00 0.00 32.48 4.75
4425 4783 2.355818 GGGATTTCTAGTTCCGTGCCTT 60.356 50.000 0.00 0.00 32.48 4.35
4426 4784 2.937149 GGATTTCTAGTTCCGTGCCTTC 59.063 50.000 0.00 0.00 0.00 3.46
4427 4785 3.369576 GGATTTCTAGTTCCGTGCCTTCT 60.370 47.826 0.00 0.00 0.00 2.85
4428 4786 3.764237 TTTCTAGTTCCGTGCCTTCTT 57.236 42.857 0.00 0.00 0.00 2.52
4429 4787 3.314541 TTCTAGTTCCGTGCCTTCTTC 57.685 47.619 0.00 0.00 0.00 2.87
4430 4788 1.201647 TCTAGTTCCGTGCCTTCTTCG 59.798 52.381 0.00 0.00 0.00 3.79
4431 4789 0.963962 TAGTTCCGTGCCTTCTTCGT 59.036 50.000 0.00 0.00 0.00 3.85
4432 4790 0.106149 AGTTCCGTGCCTTCTTCGTT 59.894 50.000 0.00 0.00 0.00 3.85
4433 4791 0.942252 GTTCCGTGCCTTCTTCGTTT 59.058 50.000 0.00 0.00 0.00 3.60
4434 4792 2.137523 GTTCCGTGCCTTCTTCGTTTA 58.862 47.619 0.00 0.00 0.00 2.01
4435 4793 2.074547 TCCGTGCCTTCTTCGTTTAG 57.925 50.000 0.00 0.00 0.00 1.85
4436 4794 1.342174 TCCGTGCCTTCTTCGTTTAGT 59.658 47.619 0.00 0.00 0.00 2.24
4437 4795 2.140717 CCGTGCCTTCTTCGTTTAGTT 58.859 47.619 0.00 0.00 0.00 2.24
4438 4796 2.157085 CCGTGCCTTCTTCGTTTAGTTC 59.843 50.000 0.00 0.00 0.00 3.01
4439 4797 3.057734 CGTGCCTTCTTCGTTTAGTTCT 58.942 45.455 0.00 0.00 0.00 3.01
4440 4798 3.493503 CGTGCCTTCTTCGTTTAGTTCTT 59.506 43.478 0.00 0.00 0.00 2.52
4441 4799 4.376109 CGTGCCTTCTTCGTTTAGTTCTTC 60.376 45.833 0.00 0.00 0.00 2.87
4442 4800 4.750598 GTGCCTTCTTCGTTTAGTTCTTCT 59.249 41.667 0.00 0.00 0.00 2.85
4443 4801 4.989168 TGCCTTCTTCGTTTAGTTCTTCTC 59.011 41.667 0.00 0.00 0.00 2.87
4444 4802 4.989168 GCCTTCTTCGTTTAGTTCTTCTCA 59.011 41.667 0.00 0.00 0.00 3.27
4445 4803 5.119434 GCCTTCTTCGTTTAGTTCTTCTCAG 59.881 44.000 0.00 0.00 0.00 3.35
4446 4804 6.217294 CCTTCTTCGTTTAGTTCTTCTCAGT 58.783 40.000 0.00 0.00 0.00 3.41
4447 4805 6.702282 CCTTCTTCGTTTAGTTCTTCTCAGTT 59.298 38.462 0.00 0.00 0.00 3.16
4448 4806 7.224949 CCTTCTTCGTTTAGTTCTTCTCAGTTT 59.775 37.037 0.00 0.00 0.00 2.66
4449 4807 8.488651 TTCTTCGTTTAGTTCTTCTCAGTTTT 57.511 30.769 0.00 0.00 0.00 2.43
4450 4808 7.906160 TCTTCGTTTAGTTCTTCTCAGTTTTG 58.094 34.615 0.00 0.00 0.00 2.44
4451 4809 6.044512 TCGTTTAGTTCTTCTCAGTTTTGC 57.955 37.500 0.00 0.00 0.00 3.68
4452 4810 5.007332 TCGTTTAGTTCTTCTCAGTTTTGCC 59.993 40.000 0.00 0.00 0.00 4.52
4453 4811 5.520632 GTTTAGTTCTTCTCAGTTTTGCCC 58.479 41.667 0.00 0.00 0.00 5.36
4454 4812 3.297134 AGTTCTTCTCAGTTTTGCCCA 57.703 42.857 0.00 0.00 0.00 5.36
4455 4813 2.952310 AGTTCTTCTCAGTTTTGCCCAC 59.048 45.455 0.00 0.00 0.00 4.61
4456 4814 1.593196 TCTTCTCAGTTTTGCCCACG 58.407 50.000 0.00 0.00 0.00 4.94
4457 4815 0.040067 CTTCTCAGTTTTGCCCACGC 60.040 55.000 0.00 0.00 0.00 5.34
4458 4816 0.465460 TTCTCAGTTTTGCCCACGCT 60.465 50.000 0.00 0.00 35.36 5.07
4459 4817 0.884704 TCTCAGTTTTGCCCACGCTC 60.885 55.000 0.00 0.00 35.36 5.03
4460 4818 0.886490 CTCAGTTTTGCCCACGCTCT 60.886 55.000 0.00 0.00 35.36 4.09
4461 4819 0.394938 TCAGTTTTGCCCACGCTCTA 59.605 50.000 0.00 0.00 35.36 2.43
4462 4820 1.003118 TCAGTTTTGCCCACGCTCTAT 59.997 47.619 0.00 0.00 35.36 1.98
4463 4821 1.131126 CAGTTTTGCCCACGCTCTATG 59.869 52.381 0.00 0.00 35.36 2.23
4464 4822 0.451783 GTTTTGCCCACGCTCTATGG 59.548 55.000 0.00 0.00 36.94 2.74
4465 4823 1.312371 TTTTGCCCACGCTCTATGGC 61.312 55.000 0.00 0.00 44.27 4.40
4467 4825 2.590007 GCCCACGCTCTATGGCAG 60.590 66.667 0.00 0.00 43.46 4.85
4468 4826 2.903357 CCCACGCTCTATGGCAGT 59.097 61.111 0.00 0.00 35.74 4.40
4469 4827 1.221840 CCCACGCTCTATGGCAGTT 59.778 57.895 0.00 0.00 35.74 3.16
4470 4828 0.811616 CCCACGCTCTATGGCAGTTC 60.812 60.000 0.00 0.00 35.74 3.01
4471 4829 0.176680 CCACGCTCTATGGCAGTTCT 59.823 55.000 0.00 0.00 0.00 3.01
4472 4830 1.565305 CACGCTCTATGGCAGTTCTC 58.435 55.000 0.00 0.00 0.00 2.87
4473 4831 1.134995 CACGCTCTATGGCAGTTCTCA 60.135 52.381 0.00 0.00 0.00 3.27
4474 4832 1.134965 ACGCTCTATGGCAGTTCTCAC 60.135 52.381 0.00 0.00 0.00 3.51
4475 4833 1.565305 GCTCTATGGCAGTTCTCACG 58.435 55.000 0.00 0.00 0.00 4.35
4476 4834 1.134965 GCTCTATGGCAGTTCTCACGT 60.135 52.381 0.00 0.00 0.00 4.49
4477 4835 2.675317 GCTCTATGGCAGTTCTCACGTT 60.675 50.000 0.00 0.00 0.00 3.99
4478 4836 3.589988 CTCTATGGCAGTTCTCACGTTT 58.410 45.455 0.00 0.00 0.00 3.60
4479 4837 3.585862 TCTATGGCAGTTCTCACGTTTC 58.414 45.455 0.00 0.00 0.00 2.78
4480 4838 1.523758 ATGGCAGTTCTCACGTTTCC 58.476 50.000 0.00 0.00 0.00 3.13
4481 4839 0.534203 TGGCAGTTCTCACGTTTCCC 60.534 55.000 0.00 0.00 0.00 3.97
4482 4840 0.250338 GGCAGTTCTCACGTTTCCCT 60.250 55.000 0.00 0.00 0.00 4.20
4483 4841 1.594331 GCAGTTCTCACGTTTCCCTT 58.406 50.000 0.00 0.00 0.00 3.95
4484 4842 1.531578 GCAGTTCTCACGTTTCCCTTC 59.468 52.381 0.00 0.00 0.00 3.46
4485 4843 2.833794 CAGTTCTCACGTTTCCCTTCA 58.166 47.619 0.00 0.00 0.00 3.02
4486 4844 2.544267 CAGTTCTCACGTTTCCCTTCAC 59.456 50.000 0.00 0.00 0.00 3.18
4487 4845 1.871676 GTTCTCACGTTTCCCTTCACC 59.128 52.381 0.00 0.00 0.00 4.02
4488 4846 0.032952 TCTCACGTTTCCCTTCACCG 59.967 55.000 0.00 0.00 0.00 4.94
4489 4847 0.249741 CTCACGTTTCCCTTCACCGT 60.250 55.000 0.00 0.00 0.00 4.83
4490 4848 1.000060 CTCACGTTTCCCTTCACCGTA 60.000 52.381 0.00 0.00 0.00 4.02
4491 4849 1.142474 CACGTTTCCCTTCACCGTAC 58.858 55.000 0.00 0.00 0.00 3.67
4492 4850 0.318955 ACGTTTCCCTTCACCGTACG 60.319 55.000 8.69 8.69 0.00 3.67
4493 4851 0.039256 CGTTTCCCTTCACCGTACGA 60.039 55.000 18.76 0.00 0.00 3.43
4494 4852 1.422388 GTTTCCCTTCACCGTACGAC 58.578 55.000 18.76 0.00 0.00 4.34
4495 4853 1.000171 GTTTCCCTTCACCGTACGACT 60.000 52.381 18.76 0.00 0.00 4.18
4496 4854 0.883833 TTCCCTTCACCGTACGACTC 59.116 55.000 18.76 0.00 0.00 3.36
4497 4855 0.250858 TCCCTTCACCGTACGACTCA 60.251 55.000 18.76 0.00 0.00 3.41
4498 4856 0.109412 CCCTTCACCGTACGACTCAC 60.109 60.000 18.76 0.00 0.00 3.51
4499 4857 0.109412 CCTTCACCGTACGACTCACC 60.109 60.000 18.76 0.00 0.00 4.02
4500 4858 0.109412 CTTCACCGTACGACTCACCC 60.109 60.000 18.76 0.00 0.00 4.61
4501 4859 0.538057 TTCACCGTACGACTCACCCT 60.538 55.000 18.76 0.00 0.00 4.34
4502 4860 0.957395 TCACCGTACGACTCACCCTC 60.957 60.000 18.76 0.00 0.00 4.30
4503 4861 2.037136 ACCGTACGACTCACCCTCG 61.037 63.158 18.76 0.00 37.17 4.63
4504 4862 2.099831 CGTACGACTCACCCTCGC 59.900 66.667 10.44 0.00 34.34 5.03
4505 4863 2.683859 CGTACGACTCACCCTCGCA 61.684 63.158 10.44 0.00 34.34 5.10
4506 4864 1.582968 GTACGACTCACCCTCGCAA 59.417 57.895 0.00 0.00 34.34 4.85
4507 4865 0.038892 GTACGACTCACCCTCGCAAA 60.039 55.000 0.00 0.00 34.34 3.68
4508 4866 0.675083 TACGACTCACCCTCGCAAAA 59.325 50.000 0.00 0.00 34.34 2.44
4509 4867 0.600255 ACGACTCACCCTCGCAAAAG 60.600 55.000 0.00 0.00 34.34 2.27
4510 4868 1.869690 GACTCACCCTCGCAAAAGC 59.130 57.895 0.00 0.00 0.00 3.51
4511 4869 1.578206 GACTCACCCTCGCAAAAGCC 61.578 60.000 0.00 0.00 0.00 4.35
4512 4870 2.282180 TCACCCTCGCAAAAGCCC 60.282 61.111 0.00 0.00 0.00 5.19
4513 4871 2.597217 CACCCTCGCAAAAGCCCA 60.597 61.111 0.00 0.00 0.00 5.36
4514 4872 2.197324 ACCCTCGCAAAAGCCCAA 59.803 55.556 0.00 0.00 0.00 4.12
4515 4873 1.456705 ACCCTCGCAAAAGCCCAAA 60.457 52.632 0.00 0.00 0.00 3.28
4523 4881 2.009542 GCAAAAGCCCAAACGTGGTTT 61.010 47.619 0.00 0.00 44.30 3.27
4555 4913 3.168528 ACCCCTGTCAACGGCTGT 61.169 61.111 0.00 0.00 0.00 4.40
4558 4916 2.743718 CCTGTCAACGGCTGTCCT 59.256 61.111 0.00 0.00 0.00 3.85
4569 4927 3.833732 ACGGCTGTCCTCTTATAGATGA 58.166 45.455 0.00 0.00 0.00 2.92
4635 5051 4.201679 TCGTAGATGGTGGGCGCG 62.202 66.667 0.00 0.00 0.00 6.86
4639 5055 0.249741 GTAGATGGTGGGCGCGTATT 60.250 55.000 8.43 0.00 0.00 1.89
4647 5063 0.459585 TGGGCGCGTATTCTGACTTC 60.460 55.000 8.43 0.00 0.00 3.01
4649 5065 1.066605 GGGCGCGTATTCTGACTTCTA 59.933 52.381 8.43 0.00 0.00 2.10
4672 5088 2.142761 ACCTCTGTCAGTGGCTGCA 61.143 57.895 18.85 0.00 32.28 4.41
4691 5107 2.270257 CGGTCGTAGGTGGTGGTCA 61.270 63.158 0.00 0.00 0.00 4.02
4743 5159 0.535335 GGCTTCACGGTCATAGGTGA 59.465 55.000 0.00 0.00 41.13 4.02
4754 5170 0.882042 CATAGGTGATGGGCGCAGTC 60.882 60.000 10.83 4.16 31.20 3.51
4784 5200 2.128535 TGGGACACCTTTGTTAGTGGA 58.871 47.619 0.00 0.00 38.34 4.02
4786 5202 2.370849 GGGACACCTTTGTTAGTGGAGA 59.629 50.000 0.00 0.00 38.34 3.71
4796 5212 2.180159 TTAGTGGAGAGCGCCAACCC 62.180 60.000 2.29 0.56 40.20 4.11
4810 5229 1.687563 CAACCCGAAAAAGAGGTGGT 58.312 50.000 0.00 0.00 33.05 4.16
4825 5244 4.478686 AGAGGTGGTTTATTAAGCCAGGAT 59.521 41.667 11.80 2.18 32.31 3.24
4829 5248 5.437060 GTGGTTTATTAAGCCAGGATGAGA 58.563 41.667 11.80 0.00 39.69 3.27
4837 5256 2.114616 AGCCAGGATGAGAACTCGAAT 58.885 47.619 0.00 0.00 39.69 3.34
4897 5317 3.863424 CCGACCAAGTATGTGTACATGAC 59.137 47.826 0.00 0.00 37.15 3.06
4901 5321 6.183360 CGACCAAGTATGTGTACATGACTTTC 60.183 42.308 14.06 10.76 37.15 2.62
4905 5325 7.064609 CCAAGTATGTGTACATGACTTTCGAAT 59.935 37.037 14.06 0.00 37.15 3.34
4950 5370 7.254227 ACTAAACGAAGTGAAGCATAAAACA 57.746 32.000 0.00 0.00 45.00 2.83
4971 5391 6.657836 ACAAACCGTTTACTCACTATATGC 57.342 37.500 0.00 0.00 0.00 3.14
5019 5441 2.382882 TGTTCAAGCCATTTGGTGTGA 58.617 42.857 0.00 0.00 37.39 3.58
5120 5542 6.303839 ACAAAAGTAGGCCACAGAAATTAGA 58.696 36.000 5.01 0.00 0.00 2.10
5129 5551 5.760743 GGCCACAGAAATTAGATTAGTCCTC 59.239 44.000 0.00 0.00 0.00 3.71
5174 5608 8.371571 AGGAAGAGCCTCAAATAATTTTGAAT 57.628 30.769 0.00 0.00 46.97 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 44 2.493030 CCGACCGGACGCAATAGT 59.507 61.111 21.02 0.00 37.50 2.12
92 100 2.743538 GGCAGCATCGTCAGCACA 60.744 61.111 0.00 0.00 0.00 4.57
200 209 1.539388 GAAACCGACAACCATCATGCA 59.461 47.619 0.00 0.00 0.00 3.96
339 348 2.888414 GGAGAGAAGAAGGGTATCCTCG 59.112 54.545 0.00 0.00 44.07 4.63
344 353 3.558033 GACGAGGAGAGAAGAAGGGTAT 58.442 50.000 0.00 0.00 0.00 2.73
398 409 3.701604 GAAGGGACGCGACGATGCT 62.702 63.158 15.93 0.00 0.00 3.79
432 443 1.935327 GACTCTGAAGCGCCGGTACT 61.935 60.000 2.29 0.00 0.00 2.73
485 496 3.682292 GAAGAAGCCCCGCGACCAT 62.682 63.158 8.23 0.00 0.00 3.55
617 633 6.422400 CCGCTTTGTATTACAAAACAACCAAT 59.578 34.615 19.56 0.00 46.15 3.16
625 645 5.509332 GGTTTCCCCGCTTTGTATTACAAAA 60.509 40.000 19.56 4.68 46.15 2.44
645 665 3.245948 TGCAATCCTATGGGAAAGGGTTT 60.246 43.478 0.22 0.00 45.78 3.27
648 668 2.754012 TGCAATCCTATGGGAAAGGG 57.246 50.000 0.22 0.00 45.78 3.95
651 671 5.595542 CAGAGAATTGCAATCCTATGGGAAA 59.404 40.000 12.06 0.00 45.78 3.13
654 674 3.825014 CCAGAGAATTGCAATCCTATGGG 59.175 47.826 26.67 12.24 35.13 4.00
655 675 4.722220 TCCAGAGAATTGCAATCCTATGG 58.278 43.478 27.97 27.97 38.86 2.74
656 676 6.704289 TTTCCAGAGAATTGCAATCCTATG 57.296 37.500 12.85 12.85 0.00 2.23
657 677 7.783596 AGAATTTCCAGAGAATTGCAATCCTAT 59.216 33.333 13.38 0.00 0.00 2.57
658 678 7.121382 AGAATTTCCAGAGAATTGCAATCCTA 58.879 34.615 13.38 0.00 0.00 2.94
659 679 5.956563 AGAATTTCCAGAGAATTGCAATCCT 59.043 36.000 13.38 4.73 0.00 3.24
660 680 6.218108 AGAATTTCCAGAGAATTGCAATCC 57.782 37.500 13.38 0.00 0.00 3.01
662 682 9.857656 TCTATAGAATTTCCAGAGAATTGCAAT 57.142 29.630 5.99 5.99 0.00 3.56
663 683 9.685276 TTCTATAGAATTTCCAGAGAATTGCAA 57.315 29.630 11.24 0.00 0.00 4.08
664 684 9.857656 ATTCTATAGAATTTCCAGAGAATTGCA 57.142 29.630 20.20 0.00 41.64 4.08
681 701 9.685276 TCATTTGCTTCAAAGGAATTCTATAGA 57.315 29.630 5.23 0.00 40.36 1.98
682 702 9.947669 CTCATTTGCTTCAAAGGAATTCTATAG 57.052 33.333 5.23 0.00 42.17 1.31
683 703 8.408601 GCTCATTTGCTTCAAAGGAATTCTATA 58.591 33.333 5.23 0.00 42.17 1.31
684 704 7.263496 GCTCATTTGCTTCAAAGGAATTCTAT 58.737 34.615 5.23 0.00 42.17 1.98
685 705 6.350445 GGCTCATTTGCTTCAAAGGAATTCTA 60.350 38.462 5.23 0.00 42.17 2.10
686 706 5.476614 GCTCATTTGCTTCAAAGGAATTCT 58.523 37.500 5.23 0.00 42.17 2.40
687 707 4.628766 GGCTCATTTGCTTCAAAGGAATTC 59.371 41.667 7.81 0.00 42.17 2.17
688 708 4.564199 GGGCTCATTTGCTTCAAAGGAATT 60.564 41.667 7.81 0.00 42.17 2.17
689 709 3.055602 GGGCTCATTTGCTTCAAAGGAAT 60.056 43.478 7.81 0.00 42.17 3.01
690 710 2.299867 GGGCTCATTTGCTTCAAAGGAA 59.700 45.455 7.81 0.00 42.17 3.36
691 711 1.895131 GGGCTCATTTGCTTCAAAGGA 59.105 47.619 6.50 6.50 40.89 3.36
692 712 1.897802 AGGGCTCATTTGCTTCAAAGG 59.102 47.619 0.00 0.00 36.76 3.11
693 713 2.415090 CGAGGGCTCATTTGCTTCAAAG 60.415 50.000 0.00 0.00 36.76 2.77
694 714 1.541147 CGAGGGCTCATTTGCTTCAAA 59.459 47.619 0.00 0.00 37.75 2.69
695 715 1.167851 CGAGGGCTCATTTGCTTCAA 58.832 50.000 0.00 0.00 0.00 2.69
696 716 0.036732 ACGAGGGCTCATTTGCTTCA 59.963 50.000 0.00 0.00 0.00 3.02
697 717 0.729690 GACGAGGGCTCATTTGCTTC 59.270 55.000 0.00 0.00 0.00 3.86
698 718 0.326264 AGACGAGGGCTCATTTGCTT 59.674 50.000 0.00 0.00 0.00 3.91
699 719 0.326264 AAGACGAGGGCTCATTTGCT 59.674 50.000 0.00 0.00 0.00 3.91
700 720 0.449388 CAAGACGAGGGCTCATTTGC 59.551 55.000 0.00 0.00 0.00 3.68
701 721 1.813513 ACAAGACGAGGGCTCATTTG 58.186 50.000 0.00 0.00 0.00 2.32
702 722 3.695830 TTACAAGACGAGGGCTCATTT 57.304 42.857 0.00 0.00 0.00 2.32
703 723 3.695830 TTTACAAGACGAGGGCTCATT 57.304 42.857 0.00 0.00 0.00 2.57
704 724 3.914426 ATTTACAAGACGAGGGCTCAT 57.086 42.857 0.00 0.00 0.00 2.90
705 725 3.695830 AATTTACAAGACGAGGGCTCA 57.304 42.857 0.00 0.00 0.00 4.26
706 726 4.034163 GCTTAATTTACAAGACGAGGGCTC 59.966 45.833 0.00 0.00 0.00 4.70
707 727 3.939592 GCTTAATTTACAAGACGAGGGCT 59.060 43.478 0.00 0.00 0.00 5.19
708 728 3.242316 CGCTTAATTTACAAGACGAGGGC 60.242 47.826 0.00 0.00 0.00 5.19
709 729 4.178540 TCGCTTAATTTACAAGACGAGGG 58.821 43.478 0.00 0.00 32.15 4.30
710 730 4.259850 GCTCGCTTAATTTACAAGACGAGG 60.260 45.833 21.31 11.84 42.79 4.63
711 731 4.326278 TGCTCGCTTAATTTACAAGACGAG 59.674 41.667 18.58 18.58 43.92 4.18
712 732 4.239304 TGCTCGCTTAATTTACAAGACGA 58.761 39.130 0.00 0.00 33.63 4.20
713 733 4.577687 TGCTCGCTTAATTTACAAGACG 57.422 40.909 0.00 0.00 0.00 4.18
714 734 6.237306 GCAATTGCTCGCTTAATTTACAAGAC 60.237 38.462 23.21 0.00 38.21 3.01
715 735 5.799936 GCAATTGCTCGCTTAATTTACAAGA 59.200 36.000 23.21 0.00 38.21 3.02
741 761 0.462759 CCCGGAGATTTGACAGCTCC 60.463 60.000 0.73 9.75 43.73 4.70
768 788 1.133407 GTTGACTAGTGAGGAGCCGAG 59.867 57.143 0.00 0.00 0.00 4.63
1002 1026 3.513515 GCTAATTCTGGGAGGAGATCGAT 59.486 47.826 0.00 0.00 0.00 3.59
1028 1052 3.449227 TGGACGGACCAGCTAGCG 61.449 66.667 9.55 4.28 44.64 4.26
1064 1088 2.592308 GCAGGGTGGGAGATGGAC 59.408 66.667 0.00 0.00 0.00 4.02
1079 1103 3.597675 TACAACAGCATCGCCGGCA 62.598 57.895 28.98 14.46 0.00 5.69
1419 1443 4.516195 GACGGCCTCTTCCTCGCC 62.516 72.222 0.00 0.00 39.41 5.54
1546 1570 3.847602 CCCTCTCCTGCTCGCCAG 61.848 72.222 0.00 0.00 41.41 4.85
1566 1590 0.673985 CATCCTCCATTGCATGCCTG 59.326 55.000 16.68 12.62 0.00 4.85
1593 1617 2.037121 TCCAAGTTTCTGAGCGATCACA 59.963 45.455 0.00 0.00 0.00 3.58
1609 1633 0.255318 AGCTGGGAATCTGCTCCAAG 59.745 55.000 0.00 0.00 45.71 3.61
1616 1640 4.952335 AGAATTTTACCAGCTGGGAATCTG 59.048 41.667 35.42 10.03 37.97 2.90
1679 1703 7.289317 AGGAAAAATGTAGGCATGATGATGATT 59.711 33.333 0.00 0.00 35.15 2.57
1716 1740 8.410912 GGGAATTAAAATCGGTTTTGCTAGTAT 58.589 33.333 16.59 0.00 38.01 2.12
1719 1743 6.626302 TGGGAATTAAAATCGGTTTTGCTAG 58.374 36.000 16.59 0.00 38.01 3.42
1720 1744 6.591750 TGGGAATTAAAATCGGTTTTGCTA 57.408 33.333 16.59 2.48 38.01 3.49
1721 1745 5.476091 TGGGAATTAAAATCGGTTTTGCT 57.524 34.783 16.59 0.60 38.01 3.91
1722 1746 5.641636 ACATGGGAATTAAAATCGGTTTTGC 59.358 36.000 16.59 3.44 38.01 3.68
1723 1747 6.312672 GGACATGGGAATTAAAATCGGTTTTG 59.687 38.462 16.59 0.00 38.01 2.44
1724 1748 6.212589 AGGACATGGGAATTAAAATCGGTTTT 59.787 34.615 11.75 11.75 40.48 2.43
1725 1749 5.719563 AGGACATGGGAATTAAAATCGGTTT 59.280 36.000 0.00 0.00 0.00 3.27
1726 1750 5.269189 AGGACATGGGAATTAAAATCGGTT 58.731 37.500 0.00 0.00 0.00 4.44
1727 1751 4.867086 AGGACATGGGAATTAAAATCGGT 58.133 39.130 0.00 0.00 0.00 4.69
1728 1752 5.505654 CGAAGGACATGGGAATTAAAATCGG 60.506 44.000 0.00 0.00 0.00 4.18
1729 1753 5.065988 ACGAAGGACATGGGAATTAAAATCG 59.934 40.000 0.00 0.00 0.00 3.34
1730 1754 6.127730 ACACGAAGGACATGGGAATTAAAATC 60.128 38.462 0.00 0.00 0.00 2.17
1731 1755 5.714806 ACACGAAGGACATGGGAATTAAAAT 59.285 36.000 0.00 0.00 0.00 1.82
1732 1756 5.074115 ACACGAAGGACATGGGAATTAAAA 58.926 37.500 0.00 0.00 0.00 1.52
1733 1757 4.658063 ACACGAAGGACATGGGAATTAAA 58.342 39.130 0.00 0.00 0.00 1.52
1734 1758 4.258543 GACACGAAGGACATGGGAATTAA 58.741 43.478 0.00 0.00 0.00 1.40
1735 1759 3.262151 TGACACGAAGGACATGGGAATTA 59.738 43.478 0.00 0.00 0.00 1.40
1736 1760 2.039746 TGACACGAAGGACATGGGAATT 59.960 45.455 0.00 0.00 0.00 2.17
1737 1761 1.628340 TGACACGAAGGACATGGGAAT 59.372 47.619 0.00 0.00 0.00 3.01
1738 1762 1.052617 TGACACGAAGGACATGGGAA 58.947 50.000 0.00 0.00 0.00 3.97
1739 1763 1.207089 GATGACACGAAGGACATGGGA 59.793 52.381 0.00 0.00 0.00 4.37
1740 1764 1.208052 AGATGACACGAAGGACATGGG 59.792 52.381 0.00 0.00 0.00 4.00
1741 1765 2.680312 AGATGACACGAAGGACATGG 57.320 50.000 0.00 0.00 0.00 3.66
1742 1766 4.142381 TGAGTAGATGACACGAAGGACATG 60.142 45.833 0.00 0.00 0.00 3.21
1743 1767 4.017126 TGAGTAGATGACACGAAGGACAT 58.983 43.478 0.00 0.00 0.00 3.06
1744 1768 3.418047 TGAGTAGATGACACGAAGGACA 58.582 45.455 0.00 0.00 0.00 4.02
1745 1769 4.336993 AGATGAGTAGATGACACGAAGGAC 59.663 45.833 0.00 0.00 0.00 3.85
1746 1770 4.527944 AGATGAGTAGATGACACGAAGGA 58.472 43.478 0.00 0.00 0.00 3.36
1747 1771 4.578516 AGAGATGAGTAGATGACACGAAGG 59.421 45.833 0.00 0.00 0.00 3.46
1748 1772 5.749596 AGAGATGAGTAGATGACACGAAG 57.250 43.478 0.00 0.00 0.00 3.79
1749 1773 7.625828 TTTAGAGATGAGTAGATGACACGAA 57.374 36.000 0.00 0.00 0.00 3.85
1750 1774 7.499232 TCATTTAGAGATGAGTAGATGACACGA 59.501 37.037 0.00 0.00 32.50 4.35
1751 1775 7.589587 GTCATTTAGAGATGAGTAGATGACACG 59.410 40.741 7.93 0.00 39.15 4.49
1752 1776 7.589587 CGTCATTTAGAGATGAGTAGATGACAC 59.410 40.741 12.02 0.00 39.23 3.67
1753 1777 7.499232 TCGTCATTTAGAGATGAGTAGATGACA 59.501 37.037 12.02 0.00 39.23 3.58
1754 1778 7.866729 TCGTCATTTAGAGATGAGTAGATGAC 58.133 38.462 0.00 0.00 37.39 3.06
1755 1779 8.628630 ATCGTCATTTAGAGATGAGTAGATGA 57.371 34.615 0.00 0.00 36.76 2.92
1756 1780 9.689976 AAATCGTCATTTAGAGATGAGTAGATG 57.310 33.333 0.00 0.00 36.76 2.90
1758 1782 9.737427 GAAAATCGTCATTTAGAGATGAGTAGA 57.263 33.333 0.00 0.00 36.76 2.59
1759 1783 9.521503 TGAAAATCGTCATTTAGAGATGAGTAG 57.478 33.333 0.00 0.00 36.76 2.57
1760 1784 9.869757 TTGAAAATCGTCATTTAGAGATGAGTA 57.130 29.630 0.00 0.00 36.76 2.59
1761 1785 8.777865 TTGAAAATCGTCATTTAGAGATGAGT 57.222 30.769 0.00 0.00 36.76 3.41
1763 1787 9.992910 CATTTGAAAATCGTCATTTAGAGATGA 57.007 29.630 0.00 0.00 35.66 2.92
1764 1788 9.778993 ACATTTGAAAATCGTCATTTAGAGATG 57.221 29.630 0.00 0.00 31.51 2.90
1774 1798 9.226606 AGTTTAGGATACATTTGAAAATCGTCA 57.773 29.630 0.00 0.00 41.41 4.35
1793 1817 9.372369 GCAAGCTAAGACCATATATAGTTTAGG 57.628 37.037 0.00 0.00 0.00 2.69
1794 1818 9.372369 GGCAAGCTAAGACCATATATAGTTTAG 57.628 37.037 0.00 7.90 0.00 1.85
1795 1819 9.101325 AGGCAAGCTAAGACCATATATAGTTTA 57.899 33.333 0.00 0.00 0.00 2.01
1796 1820 7.978925 AGGCAAGCTAAGACCATATATAGTTT 58.021 34.615 0.00 0.00 0.00 2.66
1797 1821 7.560796 AGGCAAGCTAAGACCATATATAGTT 57.439 36.000 0.00 0.00 0.00 2.24
1798 1822 7.560796 AAGGCAAGCTAAGACCATATATAGT 57.439 36.000 0.00 0.00 0.00 2.12
1799 1823 7.880195 ACAAAGGCAAGCTAAGACCATATATAG 59.120 37.037 0.00 0.00 0.00 1.31
1800 1824 7.745717 ACAAAGGCAAGCTAAGACCATATATA 58.254 34.615 0.00 0.00 0.00 0.86
1801 1825 6.605119 ACAAAGGCAAGCTAAGACCATATAT 58.395 36.000 0.00 0.00 0.00 0.86
1802 1826 6.001449 ACAAAGGCAAGCTAAGACCATATA 57.999 37.500 0.00 0.00 0.00 0.86
1803 1827 4.860022 ACAAAGGCAAGCTAAGACCATAT 58.140 39.130 0.00 0.00 0.00 1.78
1804 1828 4.261801 GACAAAGGCAAGCTAAGACCATA 58.738 43.478 0.00 0.00 0.00 2.74
1805 1829 3.084786 GACAAAGGCAAGCTAAGACCAT 58.915 45.455 0.00 0.00 0.00 3.55
1806 1830 2.504367 GACAAAGGCAAGCTAAGACCA 58.496 47.619 0.00 0.00 0.00 4.02
1807 1831 1.813178 GGACAAAGGCAAGCTAAGACC 59.187 52.381 0.00 0.00 0.00 3.85
1808 1832 1.813178 GGGACAAAGGCAAGCTAAGAC 59.187 52.381 0.00 0.00 0.00 3.01
1809 1833 1.705186 AGGGACAAAGGCAAGCTAAGA 59.295 47.619 0.00 0.00 0.00 2.10
1810 1834 2.206576 AGGGACAAAGGCAAGCTAAG 57.793 50.000 0.00 0.00 0.00 2.18
1811 1835 2.675658 AAGGGACAAAGGCAAGCTAA 57.324 45.000 0.00 0.00 0.00 3.09
1812 1836 4.316025 AATAAGGGACAAAGGCAAGCTA 57.684 40.909 0.00 0.00 0.00 3.32
1813 1837 2.907458 ATAAGGGACAAAGGCAAGCT 57.093 45.000 0.00 0.00 0.00 3.74
1814 1838 5.598416 AATAATAAGGGACAAAGGCAAGC 57.402 39.130 0.00 0.00 0.00 4.01
1815 1839 6.340522 CCAAATAATAAGGGACAAAGGCAAG 58.659 40.000 0.00 0.00 0.00 4.01
1816 1840 5.188751 CCCAAATAATAAGGGACAAAGGCAA 59.811 40.000 0.00 0.00 45.80 4.52
1817 1841 4.714308 CCCAAATAATAAGGGACAAAGGCA 59.286 41.667 0.00 0.00 45.80 4.75
1818 1842 4.100963 CCCCAAATAATAAGGGACAAAGGC 59.899 45.833 0.00 0.00 45.80 4.35
1819 1843 4.653801 CCCCCAAATAATAAGGGACAAAGG 59.346 45.833 0.00 0.00 45.80 3.11
1820 1844 4.100963 GCCCCCAAATAATAAGGGACAAAG 59.899 45.833 0.00 0.00 45.80 2.77
1821 1845 4.034410 GCCCCCAAATAATAAGGGACAAA 58.966 43.478 0.00 0.00 45.80 2.83
1822 1846 3.273618 AGCCCCCAAATAATAAGGGACAA 59.726 43.478 0.00 0.00 45.80 3.18
1823 1847 2.862597 AGCCCCCAAATAATAAGGGACA 59.137 45.455 0.00 0.00 45.80 4.02
1824 1848 3.117284 TGAGCCCCCAAATAATAAGGGAC 60.117 47.826 0.00 0.00 45.80 4.46
1825 1849 3.117284 GTGAGCCCCCAAATAATAAGGGA 60.117 47.826 0.00 0.00 45.80 4.20
1826 1850 3.230976 GTGAGCCCCCAAATAATAAGGG 58.769 50.000 0.00 0.00 42.44 3.95
1827 1851 3.909732 TGTGAGCCCCCAAATAATAAGG 58.090 45.455 0.00 0.00 0.00 2.69
1828 1852 5.422012 ACTTTGTGAGCCCCCAAATAATAAG 59.578 40.000 0.00 0.00 30.76 1.73
1829 1853 5.337788 ACTTTGTGAGCCCCCAAATAATAA 58.662 37.500 0.00 0.00 30.76 1.40
1830 1854 4.941713 ACTTTGTGAGCCCCCAAATAATA 58.058 39.130 0.00 0.00 30.76 0.98
1831 1855 3.769300 GACTTTGTGAGCCCCCAAATAAT 59.231 43.478 0.00 0.00 30.76 1.28
1832 1856 3.161866 GACTTTGTGAGCCCCCAAATAA 58.838 45.455 0.00 0.00 30.76 1.40
1833 1857 2.378547 AGACTTTGTGAGCCCCCAAATA 59.621 45.455 0.00 0.00 30.76 1.40
1834 1858 1.147817 AGACTTTGTGAGCCCCCAAAT 59.852 47.619 0.00 0.00 30.76 2.32
1835 1859 0.555769 AGACTTTGTGAGCCCCCAAA 59.444 50.000 0.00 0.00 0.00 3.28
1836 1860 0.110486 GAGACTTTGTGAGCCCCCAA 59.890 55.000 0.00 0.00 0.00 4.12
1837 1861 1.761174 GAGACTTTGTGAGCCCCCA 59.239 57.895 0.00 0.00 0.00 4.96
1838 1862 1.002011 GGAGACTTTGTGAGCCCCC 60.002 63.158 0.00 0.00 0.00 5.40
1839 1863 1.276622 TAGGAGACTTTGTGAGCCCC 58.723 55.000 0.00 0.00 43.67 5.80
1840 1864 3.418684 TTTAGGAGACTTTGTGAGCCC 57.581 47.619 0.00 0.00 43.67 5.19
1841 1865 6.174049 ACTAATTTAGGAGACTTTGTGAGCC 58.826 40.000 8.26 0.00 43.67 4.70
1842 1866 8.035984 AGTACTAATTTAGGAGACTTTGTGAGC 58.964 37.037 8.26 0.00 43.67 4.26
1843 1867 9.360093 CAGTACTAATTTAGGAGACTTTGTGAG 57.640 37.037 8.26 0.00 43.67 3.51
1844 1868 8.867097 ACAGTACTAATTTAGGAGACTTTGTGA 58.133 33.333 8.26 0.00 43.67 3.58
1858 1882 9.909644 CGCCTTACTATGATACAGTACTAATTT 57.090 33.333 0.00 0.00 0.00 1.82
1859 1883 8.521176 CCGCCTTACTATGATACAGTACTAATT 58.479 37.037 0.00 0.00 0.00 1.40
1860 1884 7.668886 ACCGCCTTACTATGATACAGTACTAAT 59.331 37.037 0.00 0.00 0.00 1.73
1861 1885 7.000472 ACCGCCTTACTATGATACAGTACTAA 59.000 38.462 0.00 0.00 0.00 2.24
1862 1886 6.429078 CACCGCCTTACTATGATACAGTACTA 59.571 42.308 0.00 0.00 0.00 1.82
1863 1887 5.241064 CACCGCCTTACTATGATACAGTACT 59.759 44.000 0.00 0.00 0.00 2.73
1864 1888 5.458891 CACCGCCTTACTATGATACAGTAC 58.541 45.833 0.00 0.00 0.00 2.73
1865 1889 4.022589 GCACCGCCTTACTATGATACAGTA 60.023 45.833 0.00 0.00 0.00 2.74
1866 1890 3.243771 GCACCGCCTTACTATGATACAGT 60.244 47.826 0.00 0.00 0.00 3.55
1867 1891 3.243737 TGCACCGCCTTACTATGATACAG 60.244 47.826 0.00 0.00 0.00 2.74
1868 1892 2.696187 TGCACCGCCTTACTATGATACA 59.304 45.455 0.00 0.00 0.00 2.29
1869 1893 3.057734 GTGCACCGCCTTACTATGATAC 58.942 50.000 5.22 0.00 0.00 2.24
1870 1894 2.963101 AGTGCACCGCCTTACTATGATA 59.037 45.455 14.63 0.00 0.00 2.15
1871 1895 1.762957 AGTGCACCGCCTTACTATGAT 59.237 47.619 14.63 0.00 0.00 2.45
1872 1896 1.191535 AGTGCACCGCCTTACTATGA 58.808 50.000 14.63 0.00 0.00 2.15
1873 1897 2.024176 AAGTGCACCGCCTTACTATG 57.976 50.000 14.63 0.00 0.00 2.23
1874 1898 2.781681 AAAGTGCACCGCCTTACTAT 57.218 45.000 14.63 0.00 0.00 2.12
1875 1899 3.244146 TGTTAAAGTGCACCGCCTTACTA 60.244 43.478 14.63 0.00 0.00 1.82
1876 1900 2.148768 GTTAAAGTGCACCGCCTTACT 58.851 47.619 14.63 0.00 0.00 2.24
1877 1901 1.874872 TGTTAAAGTGCACCGCCTTAC 59.125 47.619 14.63 5.41 0.00 2.34
1878 1902 2.257691 TGTTAAAGTGCACCGCCTTA 57.742 45.000 14.63 3.78 0.00 2.69
1897 1921 3.181440 TGTCCTTCCAAAACTCAGCTCAT 60.181 43.478 0.00 0.00 0.00 2.90
1902 1926 6.264067 AGAGATTTTGTCCTTCCAAAACTCAG 59.736 38.462 19.16 0.00 44.51 3.35
1904 1928 6.641169 AGAGATTTTGTCCTTCCAAAACTC 57.359 37.500 14.26 14.26 44.51 3.01
1951 1975 9.976511 GGCCATAACTAGCATATACGATATTTA 57.023 33.333 0.00 0.00 0.00 1.40
1955 1979 6.831868 TGAGGCCATAACTAGCATATACGATA 59.168 38.462 5.01 0.00 0.00 2.92
1956 1980 5.656859 TGAGGCCATAACTAGCATATACGAT 59.343 40.000 5.01 0.00 0.00 3.73
1957 1981 5.014202 TGAGGCCATAACTAGCATATACGA 58.986 41.667 5.01 0.00 0.00 3.43
1958 1982 5.324784 TGAGGCCATAACTAGCATATACG 57.675 43.478 5.01 0.00 0.00 3.06
1962 1990 9.836864 CATATAATTGAGGCCATAACTAGCATA 57.163 33.333 5.01 0.00 0.00 3.14
1970 1998 8.835734 AGTACATCCATATAATTGAGGCCATAA 58.164 33.333 5.01 0.00 0.00 1.90
2033 2061 9.493206 GGTCGTATTTTCTTAATTTATTTCGCA 57.507 29.630 0.00 0.00 0.00 5.10
2034 2062 9.493206 TGGTCGTATTTTCTTAATTTATTTCGC 57.507 29.630 0.00 0.00 0.00 4.70
2041 2069 9.801873 CCATGAATGGTCGTATTTTCTTAATTT 57.198 29.630 0.82 0.00 43.05 1.82
2086 2114 6.656270 TCGTTGCCGGAGATATAGAATAACTA 59.344 38.462 5.05 0.00 33.30 2.24
2091 2119 4.079970 TCTCGTTGCCGGAGATATAGAAT 58.920 43.478 5.05 0.00 33.95 2.40
2098 2126 3.118738 AGTTATTTCTCGTTGCCGGAGAT 60.119 43.478 5.05 0.00 33.95 2.75
2156 2191 4.858935 TCTGTTTTTCTACATGCAAGTGC 58.141 39.130 4.51 0.00 42.50 4.40
2162 2197 8.668353 TGTTATCTCATCTGTTTTTCTACATGC 58.332 33.333 0.00 0.00 0.00 4.06
2169 2204 9.160496 AGATCACTGTTATCTCATCTGTTTTTC 57.840 33.333 0.00 0.00 0.00 2.29
2175 2210 7.331440 GCCAATAGATCACTGTTATCTCATCTG 59.669 40.741 7.71 2.85 35.36 2.90
2180 2215 8.748412 AGATAGCCAATAGATCACTGTTATCTC 58.252 37.037 7.71 0.00 35.36 2.75
2213 2261 6.856757 ACCCATGGCTCAATCTTAGAAATAT 58.143 36.000 6.09 0.00 0.00 1.28
2246 2294 7.344441 TCACGCTAAATGATCATATGAAAACG 58.656 34.615 9.99 9.28 0.00 3.60
2250 2298 9.720667 CTTTTTCACGCTAAATGATCATATGAA 57.279 29.630 9.99 9.36 0.00 2.57
2251 2299 8.892723 ACTTTTTCACGCTAAATGATCATATGA 58.107 29.630 9.04 8.10 0.00 2.15
2254 2302 8.335356 GCTACTTTTTCACGCTAAATGATCATA 58.665 33.333 9.04 0.00 0.00 2.15
2257 2305 5.965918 GGCTACTTTTTCACGCTAAATGATC 59.034 40.000 0.00 0.00 0.00 2.92
2266 2314 2.595386 CAATGGGCTACTTTTTCACGC 58.405 47.619 0.00 0.00 0.00 5.34
2267 2315 2.556622 ACCAATGGGCTACTTTTTCACG 59.443 45.455 3.55 0.00 37.90 4.35
2268 2316 4.202212 ACAACCAATGGGCTACTTTTTCAC 60.202 41.667 3.55 0.00 37.90 3.18
2269 2317 3.964031 ACAACCAATGGGCTACTTTTTCA 59.036 39.130 3.55 0.00 37.90 2.69
2270 2318 4.600692 ACAACCAATGGGCTACTTTTTC 57.399 40.909 3.55 0.00 37.90 2.29
2286 2339 7.760794 TGCATGATCTATGAAAATCAAACAACC 59.239 33.333 0.00 0.00 39.21 3.77
2288 2341 9.308318 CATGCATGATCTATGAAAATCAAACAA 57.692 29.630 22.59 0.00 39.21 2.83
2294 2347 8.790718 ACTAACCATGCATGATCTATGAAAATC 58.209 33.333 28.31 0.00 39.21 2.17
2323 2376 9.141400 ACAAATTTAAGTTTTCGTAAACAAGCA 57.859 25.926 18.20 2.15 44.88 3.91
2324 2377 9.403869 CACAAATTTAAGTTTTCGTAAACAAGC 57.596 29.630 18.20 0.00 44.88 4.01
2331 2384 9.919348 GTGAGTACACAAATTTAAGTTTTCGTA 57.081 29.630 0.00 0.00 45.32 3.43
2332 2385 8.831000 GTGAGTACACAAATTTAAGTTTTCGT 57.169 30.769 0.00 0.00 45.32 3.85
2349 2402 3.603158 ATGTATGTTGCGGTGAGTACA 57.397 42.857 0.00 0.00 0.00 2.90
2350 2403 4.084537 GCATATGTATGTTGCGGTGAGTAC 60.085 45.833 4.29 0.00 36.11 2.73
2351 2404 4.055360 GCATATGTATGTTGCGGTGAGTA 58.945 43.478 4.29 0.00 36.11 2.59
2352 2405 2.872245 GCATATGTATGTTGCGGTGAGT 59.128 45.455 4.29 0.00 36.11 3.41
2353 2406 3.133691 AGCATATGTATGTTGCGGTGAG 58.866 45.455 4.29 0.00 41.22 3.51
2354 2407 3.192541 AGCATATGTATGTTGCGGTGA 57.807 42.857 4.29 0.00 41.22 4.02
2355 2408 3.065233 ACAAGCATATGTATGTTGCGGTG 59.935 43.478 4.29 0.00 41.22 4.94
2356 2409 3.278574 ACAAGCATATGTATGTTGCGGT 58.721 40.909 4.29 0.00 41.22 5.68
2357 2410 3.969117 ACAAGCATATGTATGTTGCGG 57.031 42.857 4.29 0.00 41.22 5.69
2358 2411 6.630676 AAAAACAAGCATATGTATGTTGCG 57.369 33.333 21.25 1.14 41.22 4.85
2412 2465 6.374613 CCCCTTAGACAGTTTTTATGAAGGAC 59.625 42.308 0.00 0.00 35.27 3.85
2419 2472 9.293404 GAACTTTACCCCTTAGACAGTTTTTAT 57.707 33.333 0.00 0.00 0.00 1.40
2426 2479 4.530946 TGAGGAACTTTACCCCTTAGACAG 59.469 45.833 0.00 0.00 41.55 3.51
2427 2480 4.495565 TGAGGAACTTTACCCCTTAGACA 58.504 43.478 0.00 0.00 41.55 3.41
2468 2523 7.219344 CACCCGTAAAAACGATCAAATTATTCC 59.781 37.037 0.00 0.00 34.64 3.01
2469 2524 7.253519 GCACCCGTAAAAACGATCAAATTATTC 60.254 37.037 0.00 0.00 34.64 1.75
2472 2632 5.048921 TGCACCCGTAAAAACGATCAAATTA 60.049 36.000 0.00 0.00 34.64 1.40
2483 2643 1.394618 ACTGCTTGCACCCGTAAAAA 58.605 45.000 0.00 0.00 0.00 1.94
2484 2644 2.257691 TACTGCTTGCACCCGTAAAA 57.742 45.000 0.00 0.00 0.00 1.52
2487 2647 1.411246 CCTATACTGCTTGCACCCGTA 59.589 52.381 0.00 0.00 0.00 4.02
2488 2648 0.178068 CCTATACTGCTTGCACCCGT 59.822 55.000 0.00 0.00 0.00 5.28
2489 2649 0.532862 CCCTATACTGCTTGCACCCG 60.533 60.000 0.00 0.00 0.00 5.28
2490 2650 0.179018 CCCCTATACTGCTTGCACCC 60.179 60.000 0.00 0.00 0.00 4.61
2509 2802 1.094785 ACATGCATAAGTCAACGCCC 58.905 50.000 0.00 0.00 0.00 6.13
2511 2804 1.131126 AGCACATGCATAAGTCAACGC 59.869 47.619 6.64 0.00 45.16 4.84
2521 2814 1.210931 GCACGTTCAGCACATGCAT 59.789 52.632 6.64 0.00 45.16 3.96
2522 2815 2.638719 GCACGTTCAGCACATGCA 59.361 55.556 6.64 0.00 45.16 3.96
2523 2816 2.126734 GGCACGTTCAGCACATGC 60.127 61.111 0.00 0.00 42.49 4.06
2524 2817 1.081906 GTGGCACGTTCAGCACATG 60.082 57.895 0.00 0.00 0.00 3.21
2525 2818 0.034756 TAGTGGCACGTTCAGCACAT 59.965 50.000 12.71 0.00 0.00 3.21
2545 2838 7.919385 AAGGGCACTTATTCCAAATCATAAT 57.081 32.000 0.00 0.00 34.49 1.28
2564 2860 4.327680 AGTCAGTTCAACAAGATAAGGGC 58.672 43.478 0.00 0.00 0.00 5.19
2588 2884 3.987404 GTCATGTGTGCCCTGACC 58.013 61.111 0.00 0.00 34.55 4.02
2594 2890 0.322456 TTGCCTAGGTCATGTGTGCC 60.322 55.000 11.31 0.00 0.00 5.01
2596 2892 5.185454 TCTTTATTGCCTAGGTCATGTGTG 58.815 41.667 11.31 1.32 0.00 3.82
2606 2906 3.120991 GCGCGTACATCTTTATTGCCTAG 60.121 47.826 8.43 0.00 0.00 3.02
2662 2962 1.745087 ACCGTAGAATGCCTGCAAATG 59.255 47.619 0.00 0.00 0.00 2.32
2663 2963 1.745087 CACCGTAGAATGCCTGCAAAT 59.255 47.619 0.00 0.00 0.00 2.32
2806 3106 2.202756 GACAGCATCCGTCGACCC 60.203 66.667 10.58 0.00 0.00 4.46
2949 3256 1.656875 GCAACACGCATCGCACAAA 60.657 52.632 0.00 0.00 41.79 2.83
2983 3290 4.166246 TGGAGTAGTAGTGGACATCGAT 57.834 45.455 0.00 0.00 0.00 3.59
2984 3291 3.639672 TGGAGTAGTAGTGGACATCGA 57.360 47.619 0.00 0.00 0.00 3.59
3004 3311 5.250200 TCATAGCAACGAACAAACCCTAAT 58.750 37.500 0.00 0.00 0.00 1.73
3151 3480 7.428826 GGATTTGAACTCTGAACTGAAAACAT 58.571 34.615 0.00 0.00 0.00 2.71
3183 3512 3.058914 CACTTTGACCCTTACTTTCAGCG 60.059 47.826 0.00 0.00 0.00 5.18
3203 3532 5.931724 CCATTTTAACCCCAAATTCAGACAC 59.068 40.000 0.00 0.00 0.00 3.67
3217 3546 8.625786 TCCTAGTTACAAGTTCCATTTTAACC 57.374 34.615 0.00 0.00 0.00 2.85
3231 3562 4.041198 CCTCCCAGTTGTTCCTAGTTACAA 59.959 45.833 3.51 3.51 32.21 2.41
3250 3581 6.555812 AAAGAAGATACGTTTTTGTCCTCC 57.444 37.500 0.00 0.00 0.00 4.30
3297 3630 5.241728 ACAAAGAGTTAAATCCCTGCAACTC 59.758 40.000 0.00 3.25 44.62 3.01
3298 3631 5.140454 ACAAAGAGTTAAATCCCTGCAACT 58.860 37.500 0.00 0.00 34.03 3.16
3307 3640 6.017357 ACGAGGGACAAACAAAGAGTTAAATC 60.017 38.462 0.00 0.00 40.26 2.17
3565 3917 5.104610 TCAATCAGCTGCCTTTCTTCTCTAT 60.105 40.000 9.47 0.00 0.00 1.98
3567 3919 3.008813 TCAATCAGCTGCCTTTCTTCTCT 59.991 43.478 9.47 0.00 0.00 3.10
3586 3938 3.243367 CCTGAACGAATTTTGGCTGTCAA 60.243 43.478 0.00 0.00 0.00 3.18
3604 3956 2.646175 GCTCACGTAGCCACCCTGA 61.646 63.158 5.92 0.00 46.25 3.86
3841 4193 3.607370 GAAGCACCCCGTGGAGTCC 62.607 68.421 0.73 0.73 33.64 3.85
3850 4202 1.377856 GAGCTCCTTGAAGCACCCC 60.378 63.158 0.87 0.00 45.00 4.95
3858 4210 0.247460 CATGTCCACGAGCTCCTTGA 59.753 55.000 8.47 0.00 0.00 3.02
3952 4309 0.963225 TCCGTCTGGTTCATTCGTCA 59.037 50.000 0.00 0.00 36.30 4.35
4117 4475 2.158696 GCATACTCTGCCCCAAAGATCT 60.159 50.000 0.00 0.00 45.66 2.75
4155 4513 8.135529 GCTTTGATTTGTTAGTCCAAACTACTT 58.864 33.333 0.00 0.00 37.72 2.24
4158 4516 7.500892 TCAGCTTTGATTTGTTAGTCCAAACTA 59.499 33.333 0.00 0.00 37.16 2.24
4161 4519 6.503524 GTCAGCTTTGATTTGTTAGTCCAAA 58.496 36.000 0.00 0.00 38.58 3.28
4205 4563 3.699038 GAGCTCTCTACAGTTGACCATCT 59.301 47.826 6.43 0.00 0.00 2.90
4212 4570 9.255304 GATAAATTTAGGAGCTCTCTACAGTTG 57.745 37.037 14.64 0.00 0.00 3.16
4274 4632 7.300658 AGACATTGGAGATATAAAATTGCCCT 58.699 34.615 0.00 0.00 0.00 5.19
4304 4662 9.197306 GGTGATATACATACATATACAGGGACA 57.803 37.037 0.00 0.00 0.00 4.02
4331 4689 6.451054 CGATTTTGTTTTAGTACAAGCATGCG 60.451 38.462 13.01 0.84 39.06 4.73
4342 4700 6.915843 GTCCACACAATCGATTTTGTTTTAGT 59.084 34.615 23.70 7.34 37.73 2.24
4377 4735 6.861065 AAAGTTACTCGAAATCTTCTGCAA 57.139 33.333 0.00 0.00 0.00 4.08
4404 4762 1.209747 AGGCACGGAACTAGAAATCCC 59.790 52.381 0.00 0.00 31.73 3.85
4405 4763 2.693267 AGGCACGGAACTAGAAATCC 57.307 50.000 0.00 0.11 0.00 3.01
4406 4764 3.863041 AGAAGGCACGGAACTAGAAATC 58.137 45.455 0.00 0.00 0.00 2.17
4407 4765 3.983044 AGAAGGCACGGAACTAGAAAT 57.017 42.857 0.00 0.00 0.00 2.17
4408 4766 3.660865 GAAGAAGGCACGGAACTAGAAA 58.339 45.455 0.00 0.00 0.00 2.52
4409 4767 2.352421 CGAAGAAGGCACGGAACTAGAA 60.352 50.000 0.00 0.00 0.00 2.10
4410 4768 1.201647 CGAAGAAGGCACGGAACTAGA 59.798 52.381 0.00 0.00 0.00 2.43
4411 4769 1.067776 ACGAAGAAGGCACGGAACTAG 60.068 52.381 0.00 0.00 0.00 2.57
4412 4770 0.963962 ACGAAGAAGGCACGGAACTA 59.036 50.000 0.00 0.00 0.00 2.24
4413 4771 0.106149 AACGAAGAAGGCACGGAACT 59.894 50.000 0.00 0.00 0.00 3.01
4414 4772 0.942252 AAACGAAGAAGGCACGGAAC 59.058 50.000 0.00 0.00 0.00 3.62
4415 4773 2.224113 ACTAAACGAAGAAGGCACGGAA 60.224 45.455 0.00 0.00 0.00 4.30
4416 4774 1.342174 ACTAAACGAAGAAGGCACGGA 59.658 47.619 0.00 0.00 0.00 4.69
4417 4775 1.792006 ACTAAACGAAGAAGGCACGG 58.208 50.000 0.00 0.00 0.00 4.94
4418 4776 3.057734 AGAACTAAACGAAGAAGGCACG 58.942 45.455 0.00 0.00 0.00 5.34
4419 4777 4.750598 AGAAGAACTAAACGAAGAAGGCAC 59.249 41.667 0.00 0.00 0.00 5.01
4420 4778 4.957296 AGAAGAACTAAACGAAGAAGGCA 58.043 39.130 0.00 0.00 0.00 4.75
4421 4779 4.989168 TGAGAAGAACTAAACGAAGAAGGC 59.011 41.667 0.00 0.00 0.00 4.35
4422 4780 6.217294 ACTGAGAAGAACTAAACGAAGAAGG 58.783 40.000 0.00 0.00 0.00 3.46
4423 4781 7.701809 AACTGAGAAGAACTAAACGAAGAAG 57.298 36.000 0.00 0.00 0.00 2.85
4424 4782 8.388103 CAAAACTGAGAAGAACTAAACGAAGAA 58.612 33.333 0.00 0.00 0.00 2.52
4425 4783 7.465513 GCAAAACTGAGAAGAACTAAACGAAGA 60.466 37.037 0.00 0.00 0.00 2.87
4426 4784 6.629252 GCAAAACTGAGAAGAACTAAACGAAG 59.371 38.462 0.00 0.00 0.00 3.79
4427 4785 6.457799 GGCAAAACTGAGAAGAACTAAACGAA 60.458 38.462 0.00 0.00 0.00 3.85
4428 4786 5.007332 GGCAAAACTGAGAAGAACTAAACGA 59.993 40.000 0.00 0.00 0.00 3.85
4429 4787 5.205565 GGCAAAACTGAGAAGAACTAAACG 58.794 41.667 0.00 0.00 0.00 3.60
4430 4788 5.067283 TGGGCAAAACTGAGAAGAACTAAAC 59.933 40.000 0.00 0.00 0.00 2.01
4431 4789 5.067283 GTGGGCAAAACTGAGAAGAACTAAA 59.933 40.000 0.00 0.00 0.00 1.85
4432 4790 4.578928 GTGGGCAAAACTGAGAAGAACTAA 59.421 41.667 0.00 0.00 0.00 2.24
4433 4791 4.134563 GTGGGCAAAACTGAGAAGAACTA 58.865 43.478 0.00 0.00 0.00 2.24
4434 4792 2.952310 GTGGGCAAAACTGAGAAGAACT 59.048 45.455 0.00 0.00 0.00 3.01
4435 4793 2.287009 CGTGGGCAAAACTGAGAAGAAC 60.287 50.000 0.00 0.00 0.00 3.01
4436 4794 1.946768 CGTGGGCAAAACTGAGAAGAA 59.053 47.619 0.00 0.00 0.00 2.52
4437 4795 1.593196 CGTGGGCAAAACTGAGAAGA 58.407 50.000 0.00 0.00 0.00 2.87
4438 4796 0.040067 GCGTGGGCAAAACTGAGAAG 60.040 55.000 0.00 0.00 39.62 2.85
4439 4797 0.465460 AGCGTGGGCAAAACTGAGAA 60.465 50.000 0.00 0.00 43.41 2.87
4440 4798 0.884704 GAGCGTGGGCAAAACTGAGA 60.885 55.000 0.00 0.00 43.41 3.27
4441 4799 0.886490 AGAGCGTGGGCAAAACTGAG 60.886 55.000 0.00 0.00 43.41 3.35
4442 4800 0.394938 TAGAGCGTGGGCAAAACTGA 59.605 50.000 0.00 0.00 43.41 3.41
4443 4801 1.131126 CATAGAGCGTGGGCAAAACTG 59.869 52.381 0.00 0.00 43.41 3.16
4444 4802 1.453155 CATAGAGCGTGGGCAAAACT 58.547 50.000 0.00 0.00 43.41 2.66
4445 4803 0.451783 CCATAGAGCGTGGGCAAAAC 59.548 55.000 0.00 0.00 43.41 2.43
4446 4804 1.312371 GCCATAGAGCGTGGGCAAAA 61.312 55.000 0.00 0.00 45.70 2.44
4447 4805 1.748879 GCCATAGAGCGTGGGCAAA 60.749 57.895 0.00 0.00 45.70 3.68
4448 4806 2.124736 GCCATAGAGCGTGGGCAA 60.125 61.111 0.00 0.00 45.70 4.52
4450 4808 2.590007 CTGCCATAGAGCGTGGGC 60.590 66.667 0.00 0.00 46.58 5.36
4451 4809 0.811616 GAACTGCCATAGAGCGTGGG 60.812 60.000 0.00 0.00 37.22 4.61
4452 4810 0.176680 AGAACTGCCATAGAGCGTGG 59.823 55.000 0.00 0.00 39.80 4.94
4453 4811 1.134995 TGAGAACTGCCATAGAGCGTG 60.135 52.381 0.00 0.00 34.65 5.34
4454 4812 1.134965 GTGAGAACTGCCATAGAGCGT 60.135 52.381 0.00 0.00 34.65 5.07
4455 4813 1.565305 GTGAGAACTGCCATAGAGCG 58.435 55.000 0.00 0.00 34.65 5.03
4456 4814 1.134965 ACGTGAGAACTGCCATAGAGC 60.135 52.381 0.00 0.00 0.00 4.09
4457 4815 2.949451 ACGTGAGAACTGCCATAGAG 57.051 50.000 0.00 0.00 0.00 2.43
4458 4816 3.585862 GAAACGTGAGAACTGCCATAGA 58.414 45.455 0.00 0.00 0.00 1.98
4459 4817 2.673368 GGAAACGTGAGAACTGCCATAG 59.327 50.000 0.00 0.00 0.00 2.23
4460 4818 2.614481 GGGAAACGTGAGAACTGCCATA 60.614 50.000 0.00 0.00 0.00 2.74
4461 4819 1.523758 GGAAACGTGAGAACTGCCAT 58.476 50.000 0.00 0.00 0.00 4.40
4462 4820 0.534203 GGGAAACGTGAGAACTGCCA 60.534 55.000 0.00 0.00 0.00 4.92
4463 4821 0.250338 AGGGAAACGTGAGAACTGCC 60.250 55.000 0.00 0.00 0.00 4.85
4464 4822 1.531578 GAAGGGAAACGTGAGAACTGC 59.468 52.381 0.00 0.00 0.00 4.40
4465 4823 2.544267 GTGAAGGGAAACGTGAGAACTG 59.456 50.000 0.00 0.00 0.00 3.16
4466 4824 2.484947 GGTGAAGGGAAACGTGAGAACT 60.485 50.000 0.00 0.00 0.00 3.01
4467 4825 1.871676 GGTGAAGGGAAACGTGAGAAC 59.128 52.381 0.00 0.00 0.00 3.01
4468 4826 1.539496 CGGTGAAGGGAAACGTGAGAA 60.539 52.381 0.00 0.00 0.00 2.87
4469 4827 0.032952 CGGTGAAGGGAAACGTGAGA 59.967 55.000 0.00 0.00 0.00 3.27
4470 4828 0.249741 ACGGTGAAGGGAAACGTGAG 60.250 55.000 0.00 0.00 36.32 3.51
4471 4829 1.039068 TACGGTGAAGGGAAACGTGA 58.961 50.000 0.00 0.00 38.34 4.35
4472 4830 1.142474 GTACGGTGAAGGGAAACGTG 58.858 55.000 0.00 0.00 38.34 4.49
4473 4831 0.318955 CGTACGGTGAAGGGAAACGT 60.319 55.000 7.57 0.00 41.10 3.99
4474 4832 0.039256 TCGTACGGTGAAGGGAAACG 60.039 55.000 16.52 0.00 0.00 3.60
4475 4833 1.000171 AGTCGTACGGTGAAGGGAAAC 60.000 52.381 16.52 1.71 0.00 2.78
4476 4834 1.270550 GAGTCGTACGGTGAAGGGAAA 59.729 52.381 16.52 0.00 0.00 3.13
4477 4835 0.883833 GAGTCGTACGGTGAAGGGAA 59.116 55.000 16.52 0.00 0.00 3.97
4478 4836 0.250858 TGAGTCGTACGGTGAAGGGA 60.251 55.000 16.52 0.00 0.00 4.20
4479 4837 0.109412 GTGAGTCGTACGGTGAAGGG 60.109 60.000 16.52 0.00 0.00 3.95
4480 4838 0.109412 GGTGAGTCGTACGGTGAAGG 60.109 60.000 16.52 0.00 0.00 3.46
4481 4839 0.109412 GGGTGAGTCGTACGGTGAAG 60.109 60.000 16.52 0.00 0.00 3.02
4482 4840 0.538057 AGGGTGAGTCGTACGGTGAA 60.538 55.000 16.52 0.00 0.00 3.18
4483 4841 0.957395 GAGGGTGAGTCGTACGGTGA 60.957 60.000 16.52 0.00 0.00 4.02
4484 4842 1.505353 GAGGGTGAGTCGTACGGTG 59.495 63.158 16.52 0.00 0.00 4.94
4485 4843 2.037136 CGAGGGTGAGTCGTACGGT 61.037 63.158 16.52 2.70 32.62 4.83
4486 4844 2.789917 CGAGGGTGAGTCGTACGG 59.210 66.667 16.52 0.00 32.62 4.02
4487 4845 2.099831 GCGAGGGTGAGTCGTACG 59.900 66.667 9.53 9.53 39.69 3.67
4488 4846 0.038892 TTTGCGAGGGTGAGTCGTAC 60.039 55.000 0.00 0.00 39.69 3.67
4489 4847 0.675083 TTTTGCGAGGGTGAGTCGTA 59.325 50.000 0.00 0.00 39.69 3.43
4490 4848 0.600255 CTTTTGCGAGGGTGAGTCGT 60.600 55.000 0.00 0.00 39.69 4.34
4491 4849 1.901650 GCTTTTGCGAGGGTGAGTCG 61.902 60.000 0.00 0.00 40.50 4.18
4492 4850 1.869690 GCTTTTGCGAGGGTGAGTC 59.130 57.895 0.00 0.00 34.86 3.36
4493 4851 4.065110 GCTTTTGCGAGGGTGAGT 57.935 55.556 0.00 0.00 34.86 3.41
4503 4861 4.026226 CCACGTTTGGGCTTTTGC 57.974 55.556 0.00 0.00 46.64 3.68
4512 4870 0.653323 CGCGTCAGAAACCACGTTTG 60.653 55.000 0.00 0.00 35.77 2.93
4513 4871 1.085501 ACGCGTCAGAAACCACGTTT 61.086 50.000 5.58 0.00 38.54 3.60
4514 4872 1.519898 ACGCGTCAGAAACCACGTT 60.520 52.632 5.58 0.00 38.32 3.99
4515 4873 2.105528 ACGCGTCAGAAACCACGT 59.894 55.556 5.58 0.00 38.32 4.49
4523 4881 3.986006 GGTGTCCCACGCGTCAGA 61.986 66.667 9.86 6.13 34.83 3.27
4555 4913 2.497675 GCGCCCATCATCTATAAGAGGA 59.502 50.000 0.00 0.00 39.52 3.71
4558 4916 5.876651 ATATGCGCCCATCATCTATAAGA 57.123 39.130 4.18 0.00 32.85 2.10
4569 4927 2.104792 ACAAGTCAGTATATGCGCCCAT 59.895 45.455 4.18 0.00 35.44 4.00
4635 5051 5.889289 AGAGGTGTCCTAGAAGTCAGAATAC 59.111 44.000 0.00 0.00 31.76 1.89
4639 5055 3.074687 ACAGAGGTGTCCTAGAAGTCAGA 59.925 47.826 0.00 0.00 31.76 3.27
4664 5080 2.809601 CTACGACCGTGCAGCCAC 60.810 66.667 5.20 0.00 38.62 5.01
4665 5081 4.063967 CCTACGACCGTGCAGCCA 62.064 66.667 5.20 0.00 0.00 4.75
4672 5088 2.203538 ACCACCACCTACGACCGT 60.204 61.111 0.00 0.00 0.00 4.83
4691 5107 2.038269 CCCACGCGCCAATAACTGT 61.038 57.895 5.73 0.00 0.00 3.55
4754 5170 1.898574 GGTGTCCCACAAGCCAGTG 60.899 63.158 0.00 0.00 35.86 3.66
4778 5194 2.656069 GGGTTGGCGCTCTCCACTA 61.656 63.158 7.64 0.00 35.50 2.74
4784 5200 1.515521 CTTTTTCGGGTTGGCGCTCT 61.516 55.000 7.64 0.00 0.00 4.09
4786 5202 1.515521 CTCTTTTTCGGGTTGGCGCT 61.516 55.000 7.64 0.00 0.00 5.92
4796 5212 6.090783 GGCTTAATAAACCACCTCTTTTTCG 58.909 40.000 0.00 0.00 0.00 3.46
4810 5229 6.049149 CGAGTTCTCATCCTGGCTTAATAAA 58.951 40.000 0.79 0.00 0.00 1.40
4837 5256 1.738350 CTTTGAGCGTCTAGTCTCGGA 59.262 52.381 0.00 0.00 32.20 4.55
4845 5264 0.452184 CGCCTCTCTTTGAGCGTCTA 59.548 55.000 0.00 0.00 41.35 2.59
4847 5266 2.448705 GCGCCTCTCTTTGAGCGTC 61.449 63.158 0.00 0.00 41.15 5.19
4897 5317 3.319137 TGGTGAGGACTGATTCGAAAG 57.681 47.619 0.00 0.00 0.00 2.62
4901 5321 5.504665 GCATAAAATGGTGAGGACTGATTCG 60.505 44.000 0.00 0.00 0.00 3.34
4905 5325 4.009675 GTGCATAAAATGGTGAGGACTGA 58.990 43.478 0.00 0.00 0.00 3.41
4948 5368 6.167685 TGCATATAGTGAGTAAACGGTTTGT 58.832 36.000 16.05 3.34 0.00 2.83
4950 5370 6.403878 ACTGCATATAGTGAGTAAACGGTTT 58.596 36.000 11.33 11.33 0.00 3.27
5019 5441 2.224426 TGGTTGACTAAAGTGCATCCGT 60.224 45.455 0.00 0.00 0.00 4.69
5056 5478 7.661027 CCAAGTTCATTCACCAAACCAATATTT 59.339 33.333 0.00 0.00 0.00 1.40
5129 5551 9.695526 TCTTCCTTCACAAACAAATGATTATTG 57.304 29.630 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.