Multiple sequence alignment - TraesCS4A01G225200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G225200 chr4A 100.000 6998 0 0 1 6998 533009789 533016786 0.000000e+00 12923.0
1 TraesCS4A01G225200 chr4A 97.337 338 9 0 2507 2844 540259105 540258768 6.090000e-160 575.0
2 TraesCS4A01G225200 chr4A 97.546 326 8 0 2507 2832 537542870 537542545 6.130000e-155 558.0
3 TraesCS4A01G225200 chr3A 98.094 1941 20 3 2507 4430 217717338 217719278 0.000000e+00 3363.0
4 TraesCS4A01G225200 chr1D 97.782 1939 28 2 2507 4430 94050661 94052599 0.000000e+00 3328.0
5 TraesCS4A01G225200 chr7A 97.254 1930 47 4 2507 4430 540664252 540666181 0.000000e+00 3265.0
6 TraesCS4A01G225200 chr7A 96.166 1930 68 2 2507 4430 432350295 432352224 0.000000e+00 3149.0
7 TraesCS4A01G225200 chr7A 96.753 1386 34 5 2507 3885 467853959 467855340 0.000000e+00 2300.0
8 TraesCS4A01G225200 chr5B 97.001 1934 45 8 2507 4430 391231786 391229856 0.000000e+00 3238.0
9 TraesCS4A01G225200 chr3B 96.844 1933 49 8 2507 4430 784932172 784934101 0.000000e+00 3221.0
10 TraesCS4A01G225200 chr3B 89.312 1759 158 12 2682 4430 424127600 424129338 0.000000e+00 2180.0
11 TraesCS4A01G225200 chr4B 89.894 2553 186 32 1 2510 93743739 93741216 0.000000e+00 3219.0
12 TraesCS4A01G225200 chr4B 96.507 1861 54 5 4429 6284 93741234 93739380 0.000000e+00 3066.0
13 TraesCS4A01G225200 chr4B 95.122 287 11 2 6286 6572 93739218 93738935 3.850000e-122 449.0
14 TraesCS4A01G225200 chr4B 89.686 223 11 1 5267 5489 211590750 211590960 2.490000e-69 274.0
15 TraesCS4A01G225200 chr4B 95.000 80 4 0 6625 6704 93738833 93738754 7.370000e-25 126.0
16 TraesCS4A01G225200 chr4B 100.000 33 0 0 5526 5558 211590980 211591012 2.110000e-05 62.1
17 TraesCS4A01G225200 chr2B 93.958 1804 92 8 2519 4314 546949462 546947668 0.000000e+00 2712.0
18 TraesCS4A01G225200 chr4D 89.101 1991 146 32 1 1931 63235675 63233696 0.000000e+00 2409.0
19 TraesCS4A01G225200 chr4D 94.543 1356 50 10 5218 6572 63231527 63230195 0.000000e+00 2073.0
20 TraesCS4A01G225200 chr4D 95.023 663 13 10 4429 5084 63232286 63231637 0.000000e+00 1024.0
21 TraesCS4A01G225200 chr4D 93.955 579 17 9 1948 2510 63232844 63232268 0.000000e+00 859.0
22 TraesCS4A01G225200 chr4D 94.521 73 4 0 5083 5155 63231601 63231529 5.740000e-21 113.0
23 TraesCS4A01G225200 chr4D 88.889 81 7 1 6624 6704 63228656 63228578 1.610000e-16 99.0
24 TraesCS4A01G225200 chr1A 87.584 1933 193 21 2511 4430 77282829 77280931 0.000000e+00 2196.0
25 TraesCS4A01G225200 chr1A 82.407 108 16 3 6830 6936 551153852 551153747 2.690000e-14 91.6
26 TraesCS4A01G225200 chr3D 91.049 1430 109 14 2509 3927 428960990 428959569 0.000000e+00 1914.0
27 TraesCS4A01G225200 chr3D 82.178 101 17 1 6702 6802 543764494 543764593 1.250000e-12 86.1
28 TraesCS4A01G225200 chr1B 82.946 129 13 5 6700 6825 630274551 630274429 2.670000e-19 108.0
29 TraesCS4A01G225200 chr7D 80.328 122 21 2 6830 6949 398047267 398047387 9.670000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G225200 chr4A 533009789 533016786 6997 False 12923.000000 12923 100.00000 1 6998 1 chr4A.!!$F1 6997
1 TraesCS4A01G225200 chr3A 217717338 217719278 1940 False 3363.000000 3363 98.09400 2507 4430 1 chr3A.!!$F1 1923
2 TraesCS4A01G225200 chr1D 94050661 94052599 1938 False 3328.000000 3328 97.78200 2507 4430 1 chr1D.!!$F1 1923
3 TraesCS4A01G225200 chr7A 540664252 540666181 1929 False 3265.000000 3265 97.25400 2507 4430 1 chr7A.!!$F3 1923
4 TraesCS4A01G225200 chr7A 432350295 432352224 1929 False 3149.000000 3149 96.16600 2507 4430 1 chr7A.!!$F1 1923
5 TraesCS4A01G225200 chr7A 467853959 467855340 1381 False 2300.000000 2300 96.75300 2507 3885 1 chr7A.!!$F2 1378
6 TraesCS4A01G225200 chr5B 391229856 391231786 1930 True 3238.000000 3238 97.00100 2507 4430 1 chr5B.!!$R1 1923
7 TraesCS4A01G225200 chr3B 784932172 784934101 1929 False 3221.000000 3221 96.84400 2507 4430 1 chr3B.!!$F2 1923
8 TraesCS4A01G225200 chr3B 424127600 424129338 1738 False 2180.000000 2180 89.31200 2682 4430 1 chr3B.!!$F1 1748
9 TraesCS4A01G225200 chr4B 93738754 93743739 4985 True 1715.000000 3219 94.13075 1 6704 4 chr4B.!!$R1 6703
10 TraesCS4A01G225200 chr2B 546947668 546949462 1794 True 2712.000000 2712 93.95800 2519 4314 1 chr2B.!!$R1 1795
11 TraesCS4A01G225200 chr4D 63228578 63235675 7097 True 1096.166667 2409 92.67200 1 6704 6 chr4D.!!$R1 6703
12 TraesCS4A01G225200 chr1A 77280931 77282829 1898 True 2196.000000 2196 87.58400 2511 4430 1 chr1A.!!$R1 1919
13 TraesCS4A01G225200 chr3D 428959569 428960990 1421 True 1914.000000 1914 91.04900 2509 3927 1 chr3D.!!$R1 1418

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
595 639 0.240145 ACGACTGACGAGCGAATTGA 59.760 50.000 6.52 0.00 45.77 2.57 F
1507 1586 0.165944 GTTGGTTTCAGATGGACGCG 59.834 55.000 3.53 3.53 0.00 6.01 F
1585 1664 0.531532 CAGATGGCACCCTCTTAGCG 60.532 60.000 0.00 0.00 0.00 4.26 F
1675 1757 0.727398 GTAACATGAACTGCTCCCGC 59.273 55.000 0.00 0.00 0.00 6.13 F
1944 2026 1.251251 GGCTCACTTGCTGATTGGTT 58.749 50.000 0.00 0.00 0.00 3.67 F
2989 3936 1.458398 CCATACAACATTGCGGGTCA 58.542 50.000 0.00 0.00 0.00 4.02 F
4615 5627 1.472904 CCTGATCATCAGCTGACGCTT 60.473 52.381 20.97 4.12 46.47 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1921 2003 0.403271 AATCAGCAAGTGAGCCAGGT 59.597 50.000 0.00 0.00 39.07 4.00 R
3146 4096 1.344763 CCTCAGAAGGACACCTTTCGT 59.655 52.381 4.51 0.00 44.82 3.85 R
4615 5627 4.159506 TCGTCACCAGATCAACATATGACA 59.840 41.667 10.38 0.00 41.93 3.58 R
4894 5909 6.370166 ACAAGAGAAAAGTTCAGTAGCATAGC 59.630 38.462 0.00 0.00 0.00 2.97 R
5189 6246 5.641636 TGCTAATTTCAGAAGCAATACGTGA 59.358 36.000 0.00 0.00 42.96 4.35 R
5941 6999 1.687660 TCTGATCTCCTGCATCAGCTC 59.312 52.381 9.02 0.15 44.83 4.09 R
6882 9613 0.039978 CTCTTCGCTCCGCATCGTAT 60.040 55.000 0.00 0.00 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.825085 AGAGAAAACCATTGGCTCGTTTTA 59.175 37.500 1.54 0.00 39.22 1.52
58 64 4.023536 GGCTCGTTTTAACCACTTGAATCA 60.024 41.667 0.00 0.00 0.00 2.57
63 71 5.106869 CGTTTTAACCACTTGAATCATCGGA 60.107 40.000 0.90 0.00 0.00 4.55
88 96 7.552458 TTTAAGCGCTGAGATCAAATATTCA 57.448 32.000 12.58 0.00 0.00 2.57
91 99 4.454847 AGCGCTGAGATCAAATATTCATGG 59.545 41.667 10.39 0.00 0.00 3.66
92 100 4.720090 CGCTGAGATCAAATATTCATGGC 58.280 43.478 0.00 0.00 0.00 4.40
93 101 4.214758 CGCTGAGATCAAATATTCATGGCA 59.785 41.667 0.00 0.00 0.00 4.92
94 102 5.458891 GCTGAGATCAAATATTCATGGCAC 58.541 41.667 0.00 0.00 0.00 5.01
138 155 3.695830 ACGAGGGAGCAGATAAAACAA 57.304 42.857 0.00 0.00 0.00 2.83
154 171 4.406648 AAACAAAAGGAAAAGGAGGCAG 57.593 40.909 0.00 0.00 0.00 4.85
168 185 2.282745 GCAGGGCAGCCTGAACTT 60.283 61.111 12.43 0.00 39.96 2.66
190 207 8.584063 ACTTGGAAACTTAGGTTAGAAAACAA 57.416 30.769 0.00 0.00 37.34 2.83
191 208 9.197306 ACTTGGAAACTTAGGTTAGAAAACAAT 57.803 29.630 0.00 0.00 37.34 2.71
239 256 2.440796 CTCGTGCGGGGTAGGGTA 60.441 66.667 0.00 0.00 0.00 3.69
258 278 1.439543 ACTCAGGAGGCCTTTTCTGT 58.560 50.000 22.58 11.86 0.00 3.41
259 279 1.349357 ACTCAGGAGGCCTTTTCTGTC 59.651 52.381 22.58 4.80 0.00 3.51
260 280 0.321671 TCAGGAGGCCTTTTCTGTCG 59.678 55.000 22.58 6.46 0.00 4.35
290 310 2.813779 GCTTCCAACAGCAAGATACG 57.186 50.000 0.00 0.00 39.83 3.06
301 321 4.201980 ACAGCAAGATACGCGATAACACTA 60.202 41.667 15.93 0.00 0.00 2.74
307 327 4.753610 AGATACGCGATAACACTAGTAGCA 59.246 41.667 15.93 0.00 0.00 3.49
327 347 0.817654 ATGAGCCTTCGACGATGTCA 59.182 50.000 0.00 2.52 32.09 3.58
333 353 1.202582 CCTTCGACGATGTCACCTTCT 59.797 52.381 0.00 0.00 32.09 2.85
355 375 0.941963 TAGCTGGGGGAGGTATCTGT 59.058 55.000 0.00 0.00 33.31 3.41
416 437 0.395586 TGCACCAGGTGAAGCTTTGT 60.396 50.000 24.96 0.00 35.23 2.83
422 443 2.426738 CCAGGTGAAGCTTTGTTTGTCA 59.573 45.455 0.00 0.00 0.00 3.58
431 452 1.476085 CTTTGTTTGTCAGGTGGTGCA 59.524 47.619 0.00 0.00 0.00 4.57
475 518 0.949105 GCCTGACATGTCGGTCGTTT 60.949 55.000 28.57 0.00 40.72 3.60
527 571 4.600111 AGGAGGTTGGTTTTATAGTCCACA 59.400 41.667 0.00 0.00 0.00 4.17
542 586 1.296392 CACAGGATCAAGGCGGTGA 59.704 57.895 0.00 0.00 0.00 4.02
556 600 1.440060 GGTGACACCGGCGATATGA 59.560 57.895 9.30 0.00 0.00 2.15
571 615 3.185188 CGATATGAGTTGATTCCGGCAAG 59.815 47.826 0.00 0.00 0.00 4.01
595 639 0.240145 ACGACTGACGAGCGAATTGA 59.760 50.000 6.52 0.00 45.77 2.57
603 647 2.614057 GACGAGCGAATTGAAATGGGAT 59.386 45.455 0.00 0.00 0.00 3.85
616 660 3.168528 GGGATAGGAGGGCGGCAA 61.169 66.667 12.47 0.00 0.00 4.52
630 674 1.586541 GGCAAAGGCTACAAGGTGC 59.413 57.895 0.00 0.00 40.87 5.01
719 763 0.984230 AAAGAGGCCATCACGAGGAA 59.016 50.000 5.01 0.00 0.00 3.36
840 886 5.694910 GGAGTTAAAAGCTTTTTAAGGGTGC 59.305 40.000 28.21 7.66 0.00 5.01
975 1054 0.944386 TTTGCACAGCGAGGAAGAAC 59.056 50.000 0.00 0.00 0.00 3.01
990 1069 1.213013 GAACCGAGAGAGCGCTGAA 59.787 57.895 18.48 0.00 0.00 3.02
1092 1171 2.759795 GCTGCCACCCTCCTCTTT 59.240 61.111 0.00 0.00 0.00 2.52
1253 1332 2.025155 CGAGATCTCTTCCCCTTTCGA 58.975 52.381 20.26 0.00 0.00 3.71
1267 1346 5.826208 TCCCCTTTCGAAATCTTTTATAGGC 59.174 40.000 11.70 0.00 0.00 3.93
1398 1477 2.983592 CCAAACTCGGTGGGTGGC 60.984 66.667 0.00 0.00 32.03 5.01
1477 1556 4.627284 TCCTTTTTAACCGGAGATGTGA 57.373 40.909 9.46 0.00 0.00 3.58
1507 1586 0.165944 GTTGGTTTCAGATGGACGCG 59.834 55.000 3.53 3.53 0.00 6.01
1585 1664 0.531532 CAGATGGCACCCTCTTAGCG 60.532 60.000 0.00 0.00 0.00 4.26
1639 1721 5.047235 GGCTGTAGTAGTATAATGGACCTGG 60.047 48.000 0.00 0.00 0.00 4.45
1658 1740 4.293662 TGGAACATGCCAGTTATGTGTA 57.706 40.909 0.00 0.00 38.67 2.90
1675 1757 0.727398 GTAACATGAACTGCTCCCGC 59.273 55.000 0.00 0.00 0.00 6.13
1908 1990 8.641498 AGGTTGATCCATCATATACCATTTTC 57.359 34.615 10.28 0.00 37.57 2.29
1921 2003 3.081061 ACCATTTTCTCGTGCATAGCAA 58.919 40.909 0.00 0.00 41.47 3.91
1944 2026 1.251251 GGCTCACTTGCTGATTGGTT 58.749 50.000 0.00 0.00 0.00 3.67
1952 2034 5.700832 TCACTTGCTGATTGGTTACTAACTG 59.299 40.000 0.00 0.00 0.00 3.16
1964 2881 2.704725 ACTAACTGGCAAATGCAACG 57.295 45.000 7.80 0.00 44.36 4.10
2071 2988 5.614324 TTGACATTTCGGAGACCATCTAT 57.386 39.130 0.00 0.00 34.32 1.98
2078 2995 6.724893 TTTCGGAGACCATCTATGTTGATA 57.275 37.500 0.00 0.00 34.32 2.15
2133 3068 6.824305 AATGACATGTAGCTGCTTACTTTT 57.176 33.333 7.79 0.00 0.00 2.27
2208 3143 2.110011 ACCTTCTGGTATTGGCCTGTTT 59.890 45.455 3.32 0.00 46.43 2.83
2347 3282 8.919777 AGCCAAAAATTCTTTAGTACAGTAGT 57.080 30.769 0.00 0.00 0.00 2.73
2361 3296 6.045318 AGTACAGTAGTCTGCATGCTAATTG 58.955 40.000 20.33 10.29 44.77 2.32
2457 3392 2.875296 TCTACAGCAAAAGTTGGCCAT 58.125 42.857 6.09 0.00 0.00 4.40
2488 3423 4.401022 TCATGAGGTGAGCTCATTTTGTT 58.599 39.130 23.16 0.73 39.29 2.83
2489 3424 4.828939 TCATGAGGTGAGCTCATTTTGTTT 59.171 37.500 23.16 0.00 39.29 2.83
2490 3425 5.302568 TCATGAGGTGAGCTCATTTTGTTTT 59.697 36.000 23.16 0.00 39.29 2.43
2491 3426 4.935702 TGAGGTGAGCTCATTTTGTTTTG 58.064 39.130 21.47 0.00 0.00 2.44
2492 3427 4.402155 TGAGGTGAGCTCATTTTGTTTTGT 59.598 37.500 21.47 0.00 0.00 2.83
2493 3428 5.105392 TGAGGTGAGCTCATTTTGTTTTGTT 60.105 36.000 21.47 0.00 0.00 2.83
2494 3429 5.733676 AGGTGAGCTCATTTTGTTTTGTTT 58.266 33.333 21.47 0.00 0.00 2.83
2495 3430 6.872920 AGGTGAGCTCATTTTGTTTTGTTTA 58.127 32.000 21.47 0.00 0.00 2.01
2496 3431 7.327214 AGGTGAGCTCATTTTGTTTTGTTTAA 58.673 30.769 21.47 0.00 0.00 1.52
2497 3432 7.986889 AGGTGAGCTCATTTTGTTTTGTTTAAT 59.013 29.630 21.47 0.00 0.00 1.40
2498 3433 8.275632 GGTGAGCTCATTTTGTTTTGTTTAATC 58.724 33.333 21.47 0.00 0.00 1.75
2499 3434 9.034544 GTGAGCTCATTTTGTTTTGTTTAATCT 57.965 29.630 21.47 0.00 0.00 2.40
2502 3437 9.196552 AGCTCATTTTGTTTTGTTTAATCTAGC 57.803 29.630 0.00 0.00 0.00 3.42
2503 3438 9.196552 GCTCATTTTGTTTTGTTTAATCTAGCT 57.803 29.630 0.00 0.00 0.00 3.32
2989 3936 1.458398 CCATACAACATTGCGGGTCA 58.542 50.000 0.00 0.00 0.00 4.02
3003 3950 3.723348 GTCAAACCGCCGTCCTGC 61.723 66.667 0.00 0.00 0.00 4.85
3091 4039 2.173356 TCATCCATCCGGCTTTGATTCT 59.827 45.455 0.00 0.00 0.00 2.40
3146 4096 2.496871 CTGCAGCATTGACCCCAAATAA 59.503 45.455 0.00 0.00 35.67 1.40
3279 4237 3.320826 CCCTTTCGATTCCAAGGTTTGTT 59.679 43.478 11.68 0.00 38.37 2.83
4615 5627 1.472904 CCTGATCATCAGCTGACGCTT 60.473 52.381 20.97 4.12 46.47 4.68
4775 5790 6.211384 AGGTAAGCATTTGCCTAATGAGTTTT 59.789 34.615 11.59 4.24 46.15 2.43
5242 6299 3.066621 TCCATGGCAAAATCGTCTATTGC 59.933 43.478 6.96 1.29 46.60 3.56
5284 6341 9.334693 CTAATTGAACTTGTGCACTTCTTTATC 57.665 33.333 19.41 7.82 0.00 1.75
5456 6513 3.120304 GGCAAAAAGTGACGACATAGGAC 60.120 47.826 0.00 0.00 0.00 3.85
5475 6532 3.862267 GGACGAGATCTGATCAAGTTGTG 59.138 47.826 19.12 3.95 0.00 3.33
5579 6637 1.968017 CGACATGGCTGCAACCACT 60.968 57.895 11.90 0.00 44.17 4.00
5669 6727 2.486982 CACTGGCAGAAGAATGGAGTTG 59.513 50.000 23.66 0.00 0.00 3.16
5941 6999 0.607489 CAACCCTTCACTCCTGCAGG 60.607 60.000 27.87 27.87 0.00 4.85
6036 7094 1.541147 CTGCATTTCCACGGTGATTGT 59.459 47.619 10.28 0.00 0.00 2.71
6183 7242 7.624360 TTACGATTGAAATGAGTTATGCCTT 57.376 32.000 0.00 0.00 0.00 4.35
6191 7255 6.150976 TGAAATGAGTTATGCCTTGGTACTTG 59.849 38.462 0.00 0.00 0.00 3.16
6192 7256 3.343617 TGAGTTATGCCTTGGTACTTGC 58.656 45.455 0.00 0.00 0.00 4.01
6193 7257 2.683362 GAGTTATGCCTTGGTACTTGCC 59.317 50.000 0.00 0.00 0.00 4.52
6194 7258 1.749063 GTTATGCCTTGGTACTTGCCC 59.251 52.381 0.00 0.00 0.00 5.36
6195 7259 0.995803 TATGCCTTGGTACTTGCCCA 59.004 50.000 0.00 0.00 0.00 5.36
6198 7262 0.825840 GCCTTGGTACTTGCCCAACA 60.826 55.000 0.00 0.00 37.05 3.33
6216 7280 4.864247 CCAACAACATAGCCAAATAACAGC 59.136 41.667 0.00 0.00 0.00 4.40
6227 7291 5.716703 AGCCAAATAACAGCAGTTCCTATTT 59.283 36.000 0.00 0.00 39.15 1.40
6282 7506 0.889186 ACCTGTTGTGCCAACCGATC 60.889 55.000 13.35 0.00 0.00 3.69
6284 7508 1.238439 CTGTTGTGCCAACCGATCTT 58.762 50.000 13.35 0.00 0.00 2.40
6301 7525 7.713750 ACCGATCTTCATATCTTCGAAGTTTA 58.286 34.615 23.85 16.71 39.70 2.01
6342 7566 6.719301 ACTGTCATCTTCCTTGAAATGAGAT 58.281 36.000 0.00 0.00 0.00 2.75
6358 7582 3.966979 TGAGATGCCCAAGCTAATCAAA 58.033 40.909 0.00 0.00 40.80 2.69
6365 7589 3.127721 GCCCAAGCTAATCAAAGTCTGAC 59.872 47.826 0.00 0.00 34.32 3.51
6420 7644 4.192317 CACTTTCCAATCTACCACTAGCC 58.808 47.826 0.00 0.00 0.00 3.93
6473 7697 7.002879 ACGTAAGAAGTCCTATAGGAATGCTA 58.997 38.462 26.58 14.01 46.87 3.49
6474 7698 7.670559 ACGTAAGAAGTCCTATAGGAATGCTAT 59.329 37.037 26.58 18.88 46.87 2.97
6490 7714 6.128007 GGAATGCTATAAAATATGGGTGGTCG 60.128 42.308 0.00 0.00 0.00 4.79
6587 9307 0.683179 GTTATCCAAAAGCCGCCCCT 60.683 55.000 0.00 0.00 0.00 4.79
6615 9335 4.640855 CGTGGACGCGGACACACT 62.641 66.667 27.04 0.00 37.45 3.55
6616 9336 2.733593 GTGGACGCGGACACACTC 60.734 66.667 24.35 6.35 37.54 3.51
6649 9380 2.360801 CCACACCAAAAACGTTCTCCAT 59.639 45.455 0.00 0.00 0.00 3.41
6661 9392 4.906618 ACGTTCTCCATAACCATGAAACT 58.093 39.130 0.00 0.00 33.67 2.66
6718 9449 9.851686 ATGCAAATAAAACTACTCATCATAGGA 57.148 29.630 0.00 0.00 0.00 2.94
6719 9450 9.330063 TGCAAATAAAACTACTCATCATAGGAG 57.670 33.333 0.00 0.00 38.36 3.69
6720 9451 8.778358 GCAAATAAAACTACTCATCATAGGAGG 58.222 37.037 0.00 0.00 36.70 4.30
6721 9452 9.838339 CAAATAAAACTACTCATCATAGGAGGT 57.162 33.333 0.00 0.00 36.70 3.85
6725 9456 5.776173 ACTACTCATCATAGGAGGTTTCG 57.224 43.478 0.00 0.00 36.70 3.46
6726 9457 5.446860 ACTACTCATCATAGGAGGTTTCGA 58.553 41.667 0.00 0.00 36.70 3.71
6727 9458 4.657436 ACTCATCATAGGAGGTTTCGAC 57.343 45.455 0.00 0.00 36.70 4.20
6728 9459 3.066900 ACTCATCATAGGAGGTTTCGACG 59.933 47.826 0.00 0.00 36.70 5.12
6729 9460 3.284617 TCATCATAGGAGGTTTCGACGA 58.715 45.455 0.00 0.00 0.00 4.20
6730 9461 3.889538 TCATCATAGGAGGTTTCGACGAT 59.110 43.478 0.00 0.00 0.00 3.73
6731 9462 3.984508 TCATAGGAGGTTTCGACGATC 57.015 47.619 0.00 0.00 0.00 3.69
6732 9463 3.552875 TCATAGGAGGTTTCGACGATCT 58.447 45.455 0.00 0.00 0.00 2.75
6733 9464 3.564644 TCATAGGAGGTTTCGACGATCTC 59.435 47.826 0.00 6.61 0.00 2.75
6734 9465 2.131776 AGGAGGTTTCGACGATCTCT 57.868 50.000 17.06 8.13 0.00 3.10
6735 9466 1.746220 AGGAGGTTTCGACGATCTCTG 59.254 52.381 17.06 0.00 0.00 3.35
6736 9467 1.473278 GGAGGTTTCGACGATCTCTGT 59.527 52.381 17.06 0.00 0.00 3.41
6737 9468 2.520979 GAGGTTTCGACGATCTCTGTG 58.479 52.381 0.00 0.00 0.00 3.66
6738 9469 0.992802 GGTTTCGACGATCTCTGTGC 59.007 55.000 0.00 0.00 0.00 4.57
6739 9470 0.992802 GTTTCGACGATCTCTGTGCC 59.007 55.000 0.00 0.00 0.00 5.01
6740 9471 0.108804 TTTCGACGATCTCTGTGCCC 60.109 55.000 0.00 0.00 0.00 5.36
6741 9472 2.266376 TTCGACGATCTCTGTGCCCG 62.266 60.000 0.00 0.00 0.00 6.13
6742 9473 2.105128 GACGATCTCTGTGCCCGG 59.895 66.667 0.00 0.00 0.00 5.73
6743 9474 4.148825 ACGATCTCTGTGCCCGGC 62.149 66.667 1.04 1.04 0.00 6.13
6762 9493 3.285371 CTCGGTAGACGGGCAAGT 58.715 61.111 0.00 0.00 44.45 3.16
6763 9494 1.153823 CTCGGTAGACGGGCAAGTG 60.154 63.158 0.00 0.00 44.45 3.16
6764 9495 2.813908 CGGTAGACGGGCAAGTGC 60.814 66.667 0.00 0.00 39.42 4.40
6765 9496 2.813908 GGTAGACGGGCAAGTGCG 60.814 66.667 0.00 0.00 43.26 5.34
6766 9497 2.813908 GTAGACGGGCAAGTGCGG 60.814 66.667 0.00 0.00 43.26 5.69
6767 9498 2.992689 TAGACGGGCAAGTGCGGA 60.993 61.111 0.00 0.00 43.26 5.54
6768 9499 2.575893 TAGACGGGCAAGTGCGGAA 61.576 57.895 0.00 0.00 43.26 4.30
6769 9500 2.501223 TAGACGGGCAAGTGCGGAAG 62.501 60.000 0.00 0.00 43.26 3.46
6781 9512 3.571119 CGGAAGCTCCTGCACTTG 58.429 61.111 0.00 0.00 42.74 3.16
6782 9513 1.302033 CGGAAGCTCCTGCACTTGT 60.302 57.895 0.00 0.00 42.74 3.16
6783 9514 1.572085 CGGAAGCTCCTGCACTTGTG 61.572 60.000 0.00 0.00 42.74 3.33
6784 9515 1.239968 GGAAGCTCCTGCACTTGTGG 61.240 60.000 2.81 0.00 42.74 4.17
6785 9516 0.250467 GAAGCTCCTGCACTTGTGGA 60.250 55.000 2.81 0.00 42.74 4.02
6786 9517 0.183492 AAGCTCCTGCACTTGTGGAA 59.817 50.000 2.81 0.00 42.74 3.53
6787 9518 0.250640 AGCTCCTGCACTTGTGGAAG 60.251 55.000 2.81 0.00 42.74 3.46
6788 9519 1.860484 GCTCCTGCACTTGTGGAAGC 61.860 60.000 2.81 3.39 39.41 3.86
6789 9520 0.250640 CTCCTGCACTTGTGGAAGCT 60.251 55.000 2.81 0.00 31.68 3.74
6790 9521 0.250467 TCCTGCACTTGTGGAAGCTC 60.250 55.000 2.81 0.00 31.68 4.09
6791 9522 1.239968 CCTGCACTTGTGGAAGCTCC 61.240 60.000 2.81 0.00 36.96 4.70
6792 9523 1.572085 CTGCACTTGTGGAAGCTCCG 61.572 60.000 2.81 0.00 40.17 4.63
6793 9524 2.328099 GCACTTGTGGAAGCTCCGG 61.328 63.158 0.00 0.00 40.17 5.14
6794 9525 2.032681 ACTTGTGGAAGCTCCGGC 59.967 61.111 0.00 0.00 40.17 6.13
6795 9526 2.032528 CTTGTGGAAGCTCCGGCA 59.967 61.111 0.00 0.00 40.17 5.69
6796 9527 2.281484 TTGTGGAAGCTCCGGCAC 60.281 61.111 0.00 0.00 40.17 5.01
6797 9528 3.842925 TTGTGGAAGCTCCGGCACC 62.843 63.158 0.00 0.00 40.17 5.01
6798 9529 4.021925 GTGGAAGCTCCGGCACCT 62.022 66.667 0.00 0.00 40.17 4.00
6799 9530 3.706373 TGGAAGCTCCGGCACCTC 61.706 66.667 0.00 0.00 40.17 3.85
6800 9531 4.475135 GGAAGCTCCGGCACCTCC 62.475 72.222 0.00 0.00 41.70 4.30
6801 9532 3.394836 GAAGCTCCGGCACCTCCT 61.395 66.667 0.00 0.00 41.70 3.69
6802 9533 2.930562 AAGCTCCGGCACCTCCTT 60.931 61.111 0.00 0.00 41.70 3.36
6803 9534 2.860972 GAAGCTCCGGCACCTCCTTC 62.861 65.000 0.00 0.00 41.70 3.46
6804 9535 4.821589 GCTCCGGCACCTCCTTCG 62.822 72.222 0.00 0.00 38.54 3.79
6805 9536 4.148825 CTCCGGCACCTCCTTCGG 62.149 72.222 0.00 0.00 43.42 4.30
6808 9539 4.821589 CGGCACCTCCTTCGGCTC 62.822 72.222 0.00 0.00 0.00 4.70
6809 9540 4.475135 GGCACCTCCTTCGGCTCC 62.475 72.222 0.00 0.00 0.00 4.70
6810 9541 4.821589 GCACCTCCTTCGGCTCCG 62.822 72.222 1.14 1.14 41.35 4.63
6811 9542 4.821589 CACCTCCTTCGGCTCCGC 62.822 72.222 2.96 0.00 39.59 5.54
6821 9552 4.821589 GGCTCCGCCTCCACTTCG 62.822 72.222 0.00 0.00 46.69 3.79
6822 9553 4.821589 GCTCCGCCTCCACTTCGG 62.822 72.222 0.00 0.00 44.16 4.30
6823 9554 4.821589 CTCCGCCTCCACTTCGGC 62.822 72.222 0.00 0.00 42.65 5.54
6827 9558 2.125106 GCCTCCACTTCGGCGAAT 60.125 61.111 23.96 10.57 36.45 3.34
6828 9559 1.745489 GCCTCCACTTCGGCGAATT 60.745 57.895 23.96 15.30 36.45 2.17
6829 9560 1.982073 GCCTCCACTTCGGCGAATTG 61.982 60.000 26.93 26.93 36.45 2.32
6830 9561 0.673644 CCTCCACTTCGGCGAATTGT 60.674 55.000 29.75 20.44 33.14 2.71
6831 9562 0.721718 CTCCACTTCGGCGAATTGTC 59.278 55.000 29.75 0.00 33.14 3.18
6832 9563 0.672401 TCCACTTCGGCGAATTGTCC 60.672 55.000 29.75 0.00 33.14 4.02
6833 9564 1.419922 CACTTCGGCGAATTGTCCG 59.580 57.895 25.95 15.41 46.52 4.79
6834 9565 1.740296 ACTTCGGCGAATTGTCCGG 60.740 57.895 23.96 11.85 45.31 5.14
6835 9566 3.095898 CTTCGGCGAATTGTCCGGC 62.096 63.158 23.96 8.04 45.31 6.13
6838 9569 2.188469 GGCGAATTGTCCGGCCTA 59.812 61.111 0.00 0.00 45.18 3.93
6839 9570 1.450669 GGCGAATTGTCCGGCCTAA 60.451 57.895 0.00 0.00 45.18 2.69
6840 9571 1.027792 GGCGAATTGTCCGGCCTAAA 61.028 55.000 0.00 0.00 45.18 1.85
6841 9572 1.021968 GCGAATTGTCCGGCCTAAAT 58.978 50.000 0.00 0.00 0.00 1.40
6842 9573 2.215196 GCGAATTGTCCGGCCTAAATA 58.785 47.619 0.00 0.00 0.00 1.40
6843 9574 2.223377 GCGAATTGTCCGGCCTAAATAG 59.777 50.000 0.00 0.00 0.00 1.73
6844 9575 2.223377 CGAATTGTCCGGCCTAAATAGC 59.777 50.000 0.00 0.00 0.00 2.97
6850 9581 4.900815 GGCCTAAATAGCCGGCTT 57.099 55.556 37.74 20.43 43.29 4.35
6851 9582 2.630214 GGCCTAAATAGCCGGCTTC 58.370 57.895 37.74 14.35 43.29 3.86
6852 9583 0.889638 GGCCTAAATAGCCGGCTTCC 60.890 60.000 37.74 19.21 43.29 3.46
6853 9584 0.108774 GCCTAAATAGCCGGCTTCCT 59.891 55.000 37.74 20.96 40.62 3.36
6854 9585 1.878525 GCCTAAATAGCCGGCTTCCTC 60.879 57.143 37.74 13.71 40.62 3.71
6855 9586 1.270893 CCTAAATAGCCGGCTTCCTCC 60.271 57.143 37.74 0.00 0.00 4.30
6856 9587 0.763035 TAAATAGCCGGCTTCCTCCC 59.237 55.000 37.74 0.00 0.00 4.30
6857 9588 1.996070 AAATAGCCGGCTTCCTCCCC 61.996 60.000 37.74 0.00 0.00 4.81
6858 9589 2.916553 AATAGCCGGCTTCCTCCCCT 62.917 60.000 37.74 9.67 0.00 4.79
6859 9590 2.032356 ATAGCCGGCTTCCTCCCCTA 62.032 60.000 37.74 14.15 0.00 3.53
6860 9591 2.658321 TAGCCGGCTTCCTCCCCTAG 62.658 65.000 37.74 0.00 0.00 3.02
6862 9593 3.551407 CGGCTTCCTCCCCTAGGC 61.551 72.222 2.05 0.00 46.10 3.93
6863 9594 3.551407 GGCTTCCTCCCCTAGGCG 61.551 72.222 2.05 0.00 46.10 5.52
6864 9595 3.551407 GCTTCCTCCCCTAGGCGG 61.551 72.222 2.05 6.61 46.10 6.13
6865 9596 3.551407 CTTCCTCCCCTAGGCGGC 61.551 72.222 2.05 0.00 46.10 6.53
6866 9597 4.408396 TTCCTCCCCTAGGCGGCA 62.408 66.667 13.08 0.00 46.10 5.69
6867 9598 3.714078 TTCCTCCCCTAGGCGGCAT 62.714 63.158 13.08 0.00 46.10 4.40
6868 9599 3.946201 CCTCCCCTAGGCGGCATG 61.946 72.222 13.08 2.62 38.97 4.06
6869 9600 4.632974 CTCCCCTAGGCGGCATGC 62.633 72.222 13.08 9.90 45.38 4.06
6951 9682 2.505982 CCGTGTGGGCCCTATCTG 59.494 66.667 25.70 9.01 0.00 2.90
6952 9683 2.203070 CGTGTGGGCCCTATCTGC 60.203 66.667 25.70 6.71 0.00 4.26
6959 9690 4.386413 GCCCTATCTGCCAATCCG 57.614 61.111 0.00 0.00 0.00 4.18
6960 9691 1.754745 GCCCTATCTGCCAATCCGA 59.245 57.895 0.00 0.00 0.00 4.55
6961 9692 0.603975 GCCCTATCTGCCAATCCGAC 60.604 60.000 0.00 0.00 0.00 4.79
6962 9693 0.758734 CCCTATCTGCCAATCCGACA 59.241 55.000 0.00 0.00 0.00 4.35
6963 9694 1.349026 CCCTATCTGCCAATCCGACAT 59.651 52.381 0.00 0.00 0.00 3.06
6964 9695 2.420642 CCTATCTGCCAATCCGACATG 58.579 52.381 0.00 0.00 0.00 3.21
6965 9696 2.420642 CTATCTGCCAATCCGACATGG 58.579 52.381 0.00 0.00 39.80 3.66
6966 9697 0.548031 ATCTGCCAATCCGACATGGT 59.452 50.000 0.00 0.00 39.00 3.55
6967 9698 1.199615 TCTGCCAATCCGACATGGTA 58.800 50.000 0.00 0.00 39.00 3.25
6968 9699 1.557371 TCTGCCAATCCGACATGGTAA 59.443 47.619 0.00 0.00 39.00 2.85
6969 9700 1.942657 CTGCCAATCCGACATGGTAAG 59.057 52.381 0.00 0.42 39.00 2.34
6970 9701 0.663153 GCCAATCCGACATGGTAAGC 59.337 55.000 0.00 0.00 39.00 3.09
6971 9702 0.937304 CCAATCCGACATGGTAAGCG 59.063 55.000 0.00 0.00 39.52 4.68
6972 9703 1.651987 CAATCCGACATGGTAAGCGT 58.348 50.000 0.00 0.00 39.52 5.07
6973 9704 1.327460 CAATCCGACATGGTAAGCGTG 59.673 52.381 0.00 0.00 39.52 5.34
6974 9705 0.179084 ATCCGACATGGTAAGCGTGG 60.179 55.000 0.00 0.00 39.52 4.94
6975 9706 2.461110 CCGACATGGTAAGCGTGGC 61.461 63.158 0.00 0.00 0.00 5.01
6976 9707 2.461110 CGACATGGTAAGCGTGGCC 61.461 63.158 0.00 0.00 0.00 5.36
6977 9708 1.376683 GACATGGTAAGCGTGGCCA 60.377 57.895 0.00 0.00 36.64 5.36
6978 9709 1.369091 GACATGGTAAGCGTGGCCAG 61.369 60.000 5.11 0.84 35.56 4.85
6979 9710 2.114670 CATGGTAAGCGTGGCCAGG 61.115 63.158 21.22 21.22 35.56 4.45
6980 9711 2.602676 ATGGTAAGCGTGGCCAGGT 61.603 57.895 25.40 13.46 35.56 4.00
6981 9712 2.746277 GGTAAGCGTGGCCAGGTG 60.746 66.667 25.40 11.05 0.00 4.00
6982 9713 3.431725 GTAAGCGTGGCCAGGTGC 61.432 66.667 25.40 20.06 40.16 5.01
6983 9714 3.947459 TAAGCGTGGCCAGGTGCA 61.947 61.111 25.40 8.85 43.89 4.57
6984 9715 3.266686 TAAGCGTGGCCAGGTGCAT 62.267 57.895 25.40 15.91 43.89 3.96
6985 9716 2.762969 TAAGCGTGGCCAGGTGCATT 62.763 55.000 25.40 16.85 43.89 3.56
6986 9717 4.120331 GCGTGGCCAGGTGCATTC 62.120 66.667 25.40 5.07 43.89 2.67
6987 9718 3.803082 CGTGGCCAGGTGCATTCG 61.803 66.667 17.47 5.46 43.89 3.34
6988 9719 3.443045 GTGGCCAGGTGCATTCGG 61.443 66.667 5.11 0.00 43.89 4.30
6989 9720 4.738998 TGGCCAGGTGCATTCGGG 62.739 66.667 0.00 0.00 43.89 5.14
6992 9723 4.431131 CCAGGTGCATTCGGGCCT 62.431 66.667 0.84 0.00 0.00 5.19
6993 9724 2.825836 CAGGTGCATTCGGGCCTC 60.826 66.667 0.84 0.00 0.00 4.70
6994 9725 4.115199 AGGTGCATTCGGGCCTCC 62.115 66.667 0.84 0.00 0.00 4.30
6996 9727 4.115199 GTGCATTCGGGCCTCCCT 62.115 66.667 0.84 0.00 42.67 4.20
6997 9728 2.366301 TGCATTCGGGCCTCCCTA 60.366 61.111 0.84 0.00 42.67 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.448537 TTCTCTCTAGTTCAAGCAGAGC 57.551 45.455 0.00 0.00 36.55 4.09
45 46 6.404734 GCTTAAATCCGATGATTCAAGTGGTT 60.405 38.462 0.00 0.00 38.16 3.67
58 64 2.890808 TCTCAGCGCTTAAATCCGAT 57.109 45.000 7.50 0.00 0.00 4.18
63 71 8.158169 TGAATATTTGATCTCAGCGCTTAAAT 57.842 30.769 7.50 10.42 0.00 1.40
88 96 2.445492 CTTTGGGAGGGGTGTGCCAT 62.445 60.000 0.00 0.00 37.83 4.40
91 99 2.283173 CCTTTGGGAGGGGTGTGC 60.283 66.667 0.00 0.00 42.26 4.57
121 138 4.998051 TCCTTTTGTTTTATCTGCTCCCT 58.002 39.130 0.00 0.00 0.00 4.20
138 155 0.542938 GCCCTGCCTCCTTTTCCTTT 60.543 55.000 0.00 0.00 0.00 3.11
154 171 0.827507 TTTCCAAGTTCAGGCTGCCC 60.828 55.000 16.57 2.10 0.00 5.36
161 178 8.446599 TTTCTAACCTAAGTTTCCAAGTTCAG 57.553 34.615 0.00 0.00 37.42 3.02
168 185 7.068839 TGCATTGTTTTCTAACCTAAGTTTCCA 59.931 33.333 0.00 0.00 37.42 3.53
190 207 1.286553 TCCCGGGTATCCTTTTTGCAT 59.713 47.619 22.86 0.00 0.00 3.96
191 208 0.699399 TCCCGGGTATCCTTTTTGCA 59.301 50.000 22.86 0.00 0.00 4.08
239 256 1.349357 GACAGAAAAGGCCTCCTGAGT 59.651 52.381 26.75 15.67 32.13 3.41
258 278 3.064207 GTTGGAAGCATGTGAGTAACGA 58.936 45.455 0.00 0.00 0.00 3.85
259 279 2.805671 TGTTGGAAGCATGTGAGTAACG 59.194 45.455 0.00 0.00 0.00 3.18
260 280 3.365364 GCTGTTGGAAGCATGTGAGTAAC 60.365 47.826 0.00 0.00 43.01 2.50
287 307 4.880886 TTGCTACTAGTGTTATCGCGTA 57.119 40.909 5.77 0.00 0.00 4.42
290 310 4.149046 GCTCATTGCTACTAGTGTTATCGC 59.851 45.833 5.39 0.00 38.95 4.58
301 321 1.469940 CGTCGAAGGCTCATTGCTACT 60.470 52.381 0.00 0.00 42.39 2.57
307 327 1.204704 TGACATCGTCGAAGGCTCATT 59.795 47.619 4.76 0.00 34.95 2.57
320 340 3.443037 CAGCTAGAAGAAGGTGACATCG 58.557 50.000 0.00 0.00 45.70 3.84
327 347 0.417841 TCCCCCAGCTAGAAGAAGGT 59.582 55.000 0.00 0.00 0.00 3.50
333 353 1.866943 AGATACCTCCCCCAGCTAGAA 59.133 52.381 0.00 0.00 0.00 2.10
416 437 2.186160 CGCTGCACCACCTGACAAA 61.186 57.895 0.00 0.00 0.00 2.83
479 522 1.128200 GGTTTGGGCCAAAAGGAGTT 58.872 50.000 31.94 0.00 35.03 3.01
518 562 1.414181 CGCCTTGATCCTGTGGACTAT 59.586 52.381 0.00 0.00 32.98 2.12
520 564 1.599047 CGCCTTGATCCTGTGGACT 59.401 57.895 0.00 0.00 32.98 3.85
527 571 1.296715 GTGTCACCGCCTTGATCCT 59.703 57.895 0.00 0.00 0.00 3.24
542 586 0.821517 TCAACTCATATCGCCGGTGT 59.178 50.000 16.01 5.10 0.00 4.16
556 600 1.678970 GCCCTTGCCGGAATCAACT 60.679 57.895 5.05 0.00 33.16 3.16
581 625 1.737236 CCCATTTCAATTCGCTCGTCA 59.263 47.619 0.00 0.00 0.00 4.35
595 639 2.069165 GCCGCCCTCCTATCCCATTT 62.069 60.000 0.00 0.00 0.00 2.32
603 647 4.109675 GCCTTTGCCGCCCTCCTA 62.110 66.667 0.00 0.00 0.00 2.94
630 674 4.778415 CTGTCGTCGTCCCGCTGG 62.778 72.222 0.00 0.00 0.00 4.85
673 717 0.246360 TCACTCGCATCAATGTCGGT 59.754 50.000 6.87 2.97 0.00 4.69
811 857 7.371159 CCTTAAAAAGCTTTTAACTCCTCAGG 58.629 38.462 24.11 13.42 0.00 3.86
822 868 3.814842 GCATGCACCCTTAAAAAGCTTTT 59.185 39.130 18.74 18.74 0.00 2.27
840 886 4.691685 GCATCTCCTCAGAATAAGAGCATG 59.308 45.833 0.00 0.00 30.24 4.06
927 986 6.964934 GGCACTCGTTTGTATATTTACCTTTG 59.035 38.462 0.00 0.00 0.00 2.77
928 987 6.882678 AGGCACTCGTTTGTATATTTACCTTT 59.117 34.615 0.00 0.00 0.00 3.11
929 988 6.412214 AGGCACTCGTTTGTATATTTACCTT 58.588 36.000 0.00 0.00 0.00 3.50
957 1016 0.884704 GGTTCTTCCTCGCTGTGCAA 60.885 55.000 0.00 0.00 0.00 4.08
962 1021 0.179150 CTCTCGGTTCTTCCTCGCTG 60.179 60.000 0.00 0.00 0.00 5.18
975 1054 1.518133 CCTTTCAGCGCTCTCTCGG 60.518 63.158 7.13 0.13 0.00 4.63
990 1069 1.913722 CCCTCTCATGCTCTGCCTT 59.086 57.895 0.00 0.00 0.00 4.35
1113 1192 2.047274 CGAAAGAGGCGGCTGGAA 60.047 61.111 19.63 0.00 0.00 3.53
1221 1300 1.268352 GAGATCTCGAAGGATGGACGG 59.732 57.143 7.04 0.00 0.00 4.79
1253 1332 3.192466 ACGCGTCGCCTATAAAAGATTT 58.808 40.909 5.58 0.00 0.00 2.17
1267 1346 3.736061 CGTTAGAATCAACGCGTCG 57.264 52.632 14.44 0.00 44.05 5.12
1398 1477 4.738198 CGGGATGACGGTGATCTG 57.262 61.111 7.51 0.00 0.00 2.90
1477 1556 5.913137 TCTGAAACCAACAACTCACAAAT 57.087 34.783 0.00 0.00 0.00 2.32
1507 1586 1.964552 CATCCAGAGCCATCCTGAAC 58.035 55.000 0.00 0.00 33.65 3.18
1585 1664 3.065925 GCTTCAATTACCTGTCATGGAGC 59.934 47.826 0.00 0.00 35.64 4.70
1639 1721 5.621197 TGTTACACATAACTGGCATGTTC 57.379 39.130 5.75 0.00 41.24 3.18
1649 1731 5.163754 GGGAGCAGTTCATGTTACACATAAC 60.164 44.000 0.00 0.00 36.53 1.89
1670 1752 2.023414 AACAGTCAACAGTCGCGGGA 62.023 55.000 6.13 0.00 0.00 5.14
1671 1753 1.557443 GAACAGTCAACAGTCGCGGG 61.557 60.000 6.13 0.00 0.00 6.13
1672 1754 0.874175 TGAACAGTCAACAGTCGCGG 60.874 55.000 6.13 0.00 0.00 6.46
1675 1757 3.243434 ACCTAGTGAACAGTCAACAGTCG 60.243 47.826 0.00 0.00 34.87 4.18
1724 1806 5.523552 TCACGGATAGATACAACAAATGCAG 59.476 40.000 0.00 0.00 0.00 4.41
1789 1871 9.686683 AATCCACAGCCCATTAGTATTATAATC 57.313 33.333 0.00 0.00 0.00 1.75
1809 1891 4.806775 GGTACACAACAAAAACCAATCCAC 59.193 41.667 0.00 0.00 0.00 4.02
1908 1990 1.709147 GCCAGGTTGCTATGCACGAG 61.709 60.000 0.00 0.00 38.71 4.18
1921 2003 0.403271 AATCAGCAAGTGAGCCAGGT 59.597 50.000 0.00 0.00 39.07 4.00
1944 2026 2.095466 GCGTTGCATTTGCCAGTTAGTA 60.095 45.455 0.00 0.00 41.18 1.82
1952 2034 4.173256 ACTTATTTAGCGTTGCATTTGCC 58.827 39.130 0.00 0.00 41.18 4.52
1964 2881 8.204836 TCCAATAGACAGGAGAACTTATTTAGC 58.795 37.037 0.00 0.00 0.00 3.09
2118 3053 9.535878 ACTATCATTAGAAAAGTAAGCAGCTAC 57.464 33.333 0.00 0.00 0.00 3.58
2208 3143 4.431809 CCACACTTTCTTCAAACAATGCA 58.568 39.130 0.00 0.00 0.00 3.96
2457 3392 1.351076 TCACCTCATGAGTGCTCCAA 58.649 50.000 21.11 1.70 31.91 3.53
2486 3421 8.743099 GTTGTTGACAGCTAGATTAAACAAAAC 58.257 33.333 11.92 2.14 37.67 2.43
2488 3423 7.990917 TGTTGTTGACAGCTAGATTAAACAAA 58.009 30.769 11.92 3.95 37.67 2.83
2489 3424 7.561021 TGTTGTTGACAGCTAGATTAAACAA 57.439 32.000 7.99 7.99 34.62 2.83
2490 3425 7.066404 TGTTGTTGTTGACAGCTAGATTAAACA 59.934 33.333 0.00 0.00 39.88 2.83
2491 3426 7.414436 TGTTGTTGTTGACAGCTAGATTAAAC 58.586 34.615 0.00 0.00 39.88 2.01
2492 3427 7.561021 TGTTGTTGTTGACAGCTAGATTAAA 57.439 32.000 0.00 0.00 39.88 1.52
2493 3428 7.066404 TGTTGTTGTTGTTGACAGCTAGATTAA 59.934 33.333 0.00 0.00 39.88 1.40
2494 3429 6.540551 TGTTGTTGTTGTTGACAGCTAGATTA 59.459 34.615 0.00 0.00 39.88 1.75
2495 3430 5.356751 TGTTGTTGTTGTTGACAGCTAGATT 59.643 36.000 0.00 0.00 39.88 2.40
2496 3431 4.881273 TGTTGTTGTTGTTGACAGCTAGAT 59.119 37.500 0.00 0.00 39.88 1.98
2497 3432 4.257731 TGTTGTTGTTGTTGACAGCTAGA 58.742 39.130 0.00 0.00 39.88 2.43
2498 3433 4.614555 TGTTGTTGTTGTTGACAGCTAG 57.385 40.909 0.00 0.00 39.88 3.42
2499 3434 5.378292 TTTGTTGTTGTTGTTGACAGCTA 57.622 34.783 0.00 0.00 39.88 3.32
2500 3435 3.932545 TTGTTGTTGTTGTTGACAGCT 57.067 38.095 0.00 0.00 39.88 4.24
2501 3436 3.181531 GCTTTGTTGTTGTTGTTGACAGC 60.182 43.478 0.00 0.00 39.94 4.40
2502 3437 3.367630 GGCTTTGTTGTTGTTGTTGACAG 59.632 43.478 0.00 0.00 39.94 3.51
2503 3438 3.006323 AGGCTTTGTTGTTGTTGTTGACA 59.994 39.130 0.00 0.00 36.19 3.58
2504 3439 3.584834 AGGCTTTGTTGTTGTTGTTGAC 58.415 40.909 0.00 0.00 0.00 3.18
2505 3440 3.951775 AGGCTTTGTTGTTGTTGTTGA 57.048 38.095 0.00 0.00 0.00 3.18
2989 3936 3.469863 TTCTGCAGGACGGCGGTTT 62.470 57.895 15.13 0.00 41.03 3.27
3003 3950 5.232838 CACAAAAGCTAAAAGGCAAGTTCTG 59.767 40.000 0.00 0.00 34.17 3.02
3091 4039 6.998074 GGGTATTGATGAAGATGTGAACCATA 59.002 38.462 0.00 0.00 32.56 2.74
3146 4096 1.344763 CCTCAGAAGGACACCTTTCGT 59.655 52.381 4.51 0.00 44.82 3.85
4615 5627 4.159506 TCGTCACCAGATCAACATATGACA 59.840 41.667 10.38 0.00 41.93 3.58
4894 5909 6.370166 ACAAGAGAAAAGTTCAGTAGCATAGC 59.630 38.462 0.00 0.00 0.00 2.97
5189 6246 5.641636 TGCTAATTTCAGAAGCAATACGTGA 59.358 36.000 0.00 0.00 42.96 4.35
5242 6299 8.095792 AGTTCAATTAGATGCAGATGGATAGAG 58.904 37.037 0.00 0.00 0.00 2.43
5284 6341 6.498304 ACAAATGACAGAAACTAACAAGCAG 58.502 36.000 0.00 0.00 0.00 4.24
5331 6388 6.642131 TCAAATCTGCTCAAAAACTGCAATAC 59.358 34.615 0.00 0.00 36.22 1.89
5456 6513 6.808704 TCTTTACACAACTTGATCAGATCTCG 59.191 38.462 11.83 5.18 0.00 4.04
5571 6629 5.468746 TGAGTTACATTACAGAAGTGGTTGC 59.531 40.000 0.00 0.00 0.00 4.17
5579 6637 7.503521 TGCATGTTTGAGTTACATTACAGAA 57.496 32.000 0.00 0.00 34.11 3.02
5669 6727 3.140814 GCCCCTTCAATCCGCACC 61.141 66.667 0.00 0.00 0.00 5.01
5941 6999 1.687660 TCTGATCTCCTGCATCAGCTC 59.312 52.381 9.02 0.15 44.83 4.09
6036 7094 7.065085 GCTTCTCTCTTATAATGCAGACACAAA 59.935 37.037 0.00 0.00 0.00 2.83
6108 7166 8.921353 ATCTCCATGAAGAGGAAATATCAAAG 57.079 34.615 0.00 0.00 34.08 2.77
6110 7168 8.496916 TCAATCTCCATGAAGAGGAAATATCAA 58.503 33.333 0.00 0.00 34.08 2.57
6112 7170 7.390162 GGTCAATCTCCATGAAGAGGAAATATC 59.610 40.741 0.00 0.00 34.08 1.63
6122 7181 5.491070 TGTTACTGGTCAATCTCCATGAAG 58.509 41.667 0.00 0.00 34.26 3.02
6124 7183 5.698741 ATGTTACTGGTCAATCTCCATGA 57.301 39.130 0.00 0.00 34.26 3.07
6183 7242 2.373335 ATGTTGTTGGGCAAGTACCA 57.627 45.000 0.00 0.00 37.83 3.25
6191 7255 4.180817 GTTATTTGGCTATGTTGTTGGGC 58.819 43.478 0.00 0.00 0.00 5.36
6192 7256 5.398603 TGTTATTTGGCTATGTTGTTGGG 57.601 39.130 0.00 0.00 0.00 4.12
6193 7257 4.864247 GCTGTTATTTGGCTATGTTGTTGG 59.136 41.667 0.00 0.00 0.00 3.77
6194 7258 5.468592 TGCTGTTATTTGGCTATGTTGTTG 58.531 37.500 0.00 0.00 0.00 3.33
6195 7259 5.243730 ACTGCTGTTATTTGGCTATGTTGTT 59.756 36.000 0.00 0.00 0.00 2.83
6198 7262 5.105756 GGAACTGCTGTTATTTGGCTATGTT 60.106 40.000 9.14 0.00 36.39 2.71
6216 7280 8.668510 ACTGTATGCTGAATAAATAGGAACTG 57.331 34.615 0.00 0.00 41.52 3.16
6284 7508 9.309516 ACGCTTATTTAAACTTCGAAGATATGA 57.690 29.630 31.08 13.78 35.04 2.15
6301 7525 6.854496 TGACAGTAAAACAGACGCTTATTT 57.146 33.333 0.00 0.00 0.00 1.40
6342 7566 3.084039 CAGACTTTGATTAGCTTGGGCA 58.916 45.455 0.00 0.00 41.70 5.36
6358 7582 1.228894 TCCCAGCGAAGGTCAGACT 60.229 57.895 0.00 0.00 33.74 3.24
6365 7589 3.382832 ACGACCTCCCAGCGAAGG 61.383 66.667 0.00 0.00 0.00 3.46
6472 7696 5.037383 TGCACGACCACCCATATTTTATA 57.963 39.130 0.00 0.00 0.00 0.98
6473 7697 3.892284 TGCACGACCACCCATATTTTAT 58.108 40.909 0.00 0.00 0.00 1.40
6474 7698 3.351794 TGCACGACCACCCATATTTTA 57.648 42.857 0.00 0.00 0.00 1.52
6572 7796 4.360405 GGAGGGGCGGCTTTTGGA 62.360 66.667 9.56 0.00 0.00 3.53
6621 9341 3.127352 TTTTTGGTGTGGCGTCCGC 62.127 57.895 2.45 2.45 41.06 5.54
6622 9342 1.298788 GTTTTTGGTGTGGCGTCCG 60.299 57.895 0.00 0.00 0.00 4.79
6627 9358 1.535226 GGAGAACGTTTTTGGTGTGGC 60.535 52.381 0.46 0.00 0.00 5.01
6649 9380 6.183360 GGTGTGAAGTTTGAGTTTCATGGTTA 60.183 38.462 0.00 0.00 35.91 2.85
6661 9392 4.531854 TGGATTTGAGGTGTGAAGTTTGA 58.468 39.130 0.00 0.00 0.00 2.69
6704 9435 5.561145 CGTCGAAACCTCCTATGATGAGTAG 60.561 48.000 0.00 0.00 0.00 2.57
6705 9436 4.275196 CGTCGAAACCTCCTATGATGAGTA 59.725 45.833 0.00 0.00 0.00 2.59
6706 9437 3.066900 CGTCGAAACCTCCTATGATGAGT 59.933 47.826 0.00 0.00 0.00 3.41
6707 9438 3.315470 TCGTCGAAACCTCCTATGATGAG 59.685 47.826 0.00 0.00 0.00 2.90
6708 9439 3.284617 TCGTCGAAACCTCCTATGATGA 58.715 45.455 0.00 0.00 0.00 2.92
6709 9440 3.710326 TCGTCGAAACCTCCTATGATG 57.290 47.619 0.00 0.00 0.00 3.07
6710 9441 4.145807 AGATCGTCGAAACCTCCTATGAT 58.854 43.478 0.00 0.00 0.00 2.45
6711 9442 3.552875 AGATCGTCGAAACCTCCTATGA 58.447 45.455 0.00 0.00 0.00 2.15
6712 9443 3.566322 AGAGATCGTCGAAACCTCCTATG 59.434 47.826 14.85 0.00 0.00 2.23
6713 9444 3.566322 CAGAGATCGTCGAAACCTCCTAT 59.434 47.826 14.85 0.60 0.00 2.57
6714 9445 2.943690 CAGAGATCGTCGAAACCTCCTA 59.056 50.000 14.85 0.00 0.00 2.94
6715 9446 1.746220 CAGAGATCGTCGAAACCTCCT 59.254 52.381 14.85 1.45 0.00 3.69
6716 9447 1.473278 ACAGAGATCGTCGAAACCTCC 59.527 52.381 14.85 0.00 0.00 4.30
6717 9448 2.520979 CACAGAGATCGTCGAAACCTC 58.479 52.381 0.00 6.78 0.00 3.85
6718 9449 1.402984 GCACAGAGATCGTCGAAACCT 60.403 52.381 0.00 0.00 0.00 3.50
6719 9450 0.992802 GCACAGAGATCGTCGAAACC 59.007 55.000 0.00 0.00 0.00 3.27
6720 9451 0.992802 GGCACAGAGATCGTCGAAAC 59.007 55.000 0.00 0.00 0.00 2.78
6721 9452 0.108804 GGGCACAGAGATCGTCGAAA 60.109 55.000 0.00 0.00 0.00 3.46
6722 9453 1.511305 GGGCACAGAGATCGTCGAA 59.489 57.895 0.00 0.00 0.00 3.71
6723 9454 2.761195 CGGGCACAGAGATCGTCGA 61.761 63.158 0.00 0.00 0.00 4.20
6724 9455 2.278206 CGGGCACAGAGATCGTCG 60.278 66.667 0.00 0.00 0.00 5.12
6725 9456 2.105128 CCGGGCACAGAGATCGTC 59.895 66.667 0.00 0.00 0.00 4.20
6726 9457 4.148825 GCCGGGCACAGAGATCGT 62.149 66.667 15.62 0.00 0.00 3.73
6743 9474 4.124351 TTGCCCGTCTACCGAGCG 62.124 66.667 0.00 0.00 44.18 5.03
6744 9475 2.202756 CTTGCCCGTCTACCGAGC 60.203 66.667 0.00 0.00 41.22 5.03
6745 9476 1.153823 CACTTGCCCGTCTACCGAG 60.154 63.158 0.00 0.00 39.56 4.63
6746 9477 2.967397 CACTTGCCCGTCTACCGA 59.033 61.111 0.00 0.00 39.56 4.69
6747 9478 2.813908 GCACTTGCCCGTCTACCG 60.814 66.667 0.00 0.00 34.31 4.02
6748 9479 2.813908 CGCACTTGCCCGTCTACC 60.814 66.667 0.00 0.00 37.91 3.18
6749 9480 2.775032 TTCCGCACTTGCCCGTCTAC 62.775 60.000 0.00 0.00 37.91 2.59
6750 9481 2.501223 CTTCCGCACTTGCCCGTCTA 62.501 60.000 0.00 0.00 37.91 2.59
6751 9482 3.883744 CTTCCGCACTTGCCCGTCT 62.884 63.158 0.00 0.00 37.91 4.18
6752 9483 3.423154 CTTCCGCACTTGCCCGTC 61.423 66.667 0.00 0.00 37.91 4.79
6755 9486 3.435186 GAGCTTCCGCACTTGCCC 61.435 66.667 0.00 0.00 39.10 5.36
6756 9487 3.435186 GGAGCTTCCGCACTTGCC 61.435 66.667 0.00 0.00 39.10 4.52
6757 9488 2.359230 AGGAGCTTCCGCACTTGC 60.359 61.111 0.00 0.00 42.75 4.01
6758 9489 2.684843 GCAGGAGCTTCCGCACTTG 61.685 63.158 0.00 0.00 42.75 3.16
6759 9490 2.359230 GCAGGAGCTTCCGCACTT 60.359 61.111 0.00 0.00 42.75 3.16
6760 9491 3.630013 TGCAGGAGCTTCCGCACT 61.630 61.111 0.00 0.00 42.75 4.40
6762 9493 3.182590 AAGTGCAGGAGCTTCCGCA 62.183 57.895 0.00 0.00 42.75 5.69
6763 9494 2.359230 AAGTGCAGGAGCTTCCGC 60.359 61.111 0.00 0.00 42.75 5.54
6764 9495 1.302033 ACAAGTGCAGGAGCTTCCG 60.302 57.895 0.00 0.00 42.75 4.30
6765 9496 1.239968 CCACAAGTGCAGGAGCTTCC 61.240 60.000 0.00 0.00 42.74 3.46
6766 9497 0.250467 TCCACAAGTGCAGGAGCTTC 60.250 55.000 0.00 0.00 42.74 3.86
6767 9498 0.183492 TTCCACAAGTGCAGGAGCTT 59.817 50.000 0.00 0.00 42.74 3.74
6768 9499 0.250640 CTTCCACAAGTGCAGGAGCT 60.251 55.000 0.00 0.00 42.74 4.09
6769 9500 1.860484 GCTTCCACAAGTGCAGGAGC 61.860 60.000 0.00 0.00 42.57 4.70
6770 9501 0.250640 AGCTTCCACAAGTGCAGGAG 60.251 55.000 0.00 0.00 32.11 3.69
6771 9502 0.250467 GAGCTTCCACAAGTGCAGGA 60.250 55.000 0.00 0.00 31.45 3.86
6772 9503 1.239968 GGAGCTTCCACAAGTGCAGG 61.240 60.000 0.00 0.00 36.28 4.85
6773 9504 1.572085 CGGAGCTTCCACAAGTGCAG 61.572 60.000 0.00 0.00 35.91 4.41
6774 9505 1.597854 CGGAGCTTCCACAAGTGCA 60.598 57.895 0.00 0.00 35.91 4.57
6775 9506 2.328099 CCGGAGCTTCCACAAGTGC 61.328 63.158 0.00 0.00 35.91 4.40
6776 9507 2.328099 GCCGGAGCTTCCACAAGTG 61.328 63.158 5.05 0.00 35.91 3.16
6777 9508 2.032681 GCCGGAGCTTCCACAAGT 59.967 61.111 5.05 0.00 35.91 3.16
6778 9509 2.032528 TGCCGGAGCTTCCACAAG 59.967 61.111 5.05 0.00 40.80 3.16
6779 9510 2.281484 GTGCCGGAGCTTCCACAA 60.281 61.111 5.05 0.00 40.80 3.33
6780 9511 4.329545 GGTGCCGGAGCTTCCACA 62.330 66.667 5.05 0.00 40.80 4.17
6781 9512 3.959991 GAGGTGCCGGAGCTTCCAC 62.960 68.421 5.05 1.55 40.80 4.02
6782 9513 3.706373 GAGGTGCCGGAGCTTCCA 61.706 66.667 5.05 0.00 40.80 3.53
6783 9514 4.475135 GGAGGTGCCGGAGCTTCC 62.475 72.222 5.05 8.50 40.80 3.46
6784 9515 2.860972 GAAGGAGGTGCCGGAGCTTC 62.861 65.000 5.05 4.28 43.43 3.86
6785 9516 2.930562 AAGGAGGTGCCGGAGCTT 60.931 61.111 5.05 0.00 43.43 3.74
6786 9517 3.394836 GAAGGAGGTGCCGGAGCT 61.395 66.667 5.05 5.32 43.43 4.09
6787 9518 4.821589 CGAAGGAGGTGCCGGAGC 62.822 72.222 5.05 0.00 43.43 4.70
6811 9542 0.673644 ACAATTCGCCGAAGTGGAGG 60.674 55.000 27.78 6.53 41.14 4.30
6812 9543 0.721718 GACAATTCGCCGAAGTGGAG 59.278 55.000 27.78 6.88 41.14 3.86
6813 9544 0.672401 GGACAATTCGCCGAAGTGGA 60.672 55.000 27.78 0.00 41.14 4.02
6814 9545 1.794222 GGACAATTCGCCGAAGTGG 59.206 57.895 27.78 12.44 41.14 4.00
6820 9551 3.726595 TAGGCCGGACAATTCGCCG 62.727 63.158 11.69 8.23 46.80 6.46
6821 9552 1.027792 TTTAGGCCGGACAATTCGCC 61.028 55.000 11.69 0.00 0.00 5.54
6822 9553 1.021968 ATTTAGGCCGGACAATTCGC 58.978 50.000 11.69 0.00 0.00 4.70
6823 9554 2.223377 GCTATTTAGGCCGGACAATTCG 59.777 50.000 11.69 0.00 0.00 3.34
6824 9555 2.552743 GGCTATTTAGGCCGGACAATTC 59.447 50.000 11.69 0.00 42.48 2.17
6825 9556 2.583143 GGCTATTTAGGCCGGACAATT 58.417 47.619 11.69 0.92 42.48 2.32
6826 9557 2.271944 GGCTATTTAGGCCGGACAAT 57.728 50.000 11.69 3.55 42.48 2.71
6827 9558 3.792712 GGCTATTTAGGCCGGACAA 57.207 52.632 11.69 0.00 42.48 3.18
6835 9566 1.270893 GGAGGAAGCCGGCTATTTAGG 60.271 57.143 33.07 0.00 0.00 2.69
6836 9567 1.270893 GGGAGGAAGCCGGCTATTTAG 60.271 57.143 33.07 0.00 0.00 1.85
6837 9568 0.763035 GGGAGGAAGCCGGCTATTTA 59.237 55.000 33.07 0.00 0.00 1.40
6838 9569 1.532238 GGGAGGAAGCCGGCTATTT 59.468 57.895 33.07 15.67 0.00 1.40
6839 9570 2.452937 GGGGAGGAAGCCGGCTATT 61.453 63.158 33.07 16.62 0.00 1.73
6840 9571 2.032356 TAGGGGAGGAAGCCGGCTAT 62.032 60.000 33.07 19.53 0.00 2.97
6841 9572 2.658321 CTAGGGGAGGAAGCCGGCTA 62.658 65.000 33.07 9.85 0.00 3.93
6842 9573 4.089757 TAGGGGAGGAAGCCGGCT 62.090 66.667 27.08 27.08 0.00 5.52
6843 9574 3.551407 CTAGGGGAGGAAGCCGGC 61.551 72.222 21.89 21.89 0.00 6.13
6852 9583 4.632974 GCATGCCGCCTAGGGGAG 62.633 72.222 26.66 16.94 41.48 4.30
6870 9601 3.848347 ATCGTATGGCGCCGCTCTG 62.848 63.158 23.90 10.63 41.07 3.35
6871 9602 3.606662 ATCGTATGGCGCCGCTCT 61.607 61.111 23.90 8.97 41.07 4.09
6872 9603 3.406361 CATCGTATGGCGCCGCTC 61.406 66.667 23.90 13.05 41.07 5.03
6879 9610 3.406361 CGCTCCGCATCGTATGGC 61.406 66.667 0.00 0.00 0.00 4.40
6880 9611 1.278172 CTTCGCTCCGCATCGTATGG 61.278 60.000 0.00 0.00 0.00 2.74
6881 9612 0.317854 TCTTCGCTCCGCATCGTATG 60.318 55.000 0.00 0.00 0.00 2.39
6882 9613 0.039978 CTCTTCGCTCCGCATCGTAT 60.040 55.000 0.00 0.00 0.00 3.06
6883 9614 1.355563 CTCTTCGCTCCGCATCGTA 59.644 57.895 0.00 0.00 0.00 3.43
6884 9615 2.103143 CTCTTCGCTCCGCATCGT 59.897 61.111 0.00 0.00 0.00 3.73
6885 9616 2.656651 CCTCTTCGCTCCGCATCG 60.657 66.667 0.00 0.00 0.00 3.84
6886 9617 2.964389 GCCTCTTCGCTCCGCATC 60.964 66.667 0.00 0.00 0.00 3.91
6887 9618 4.880537 CGCCTCTTCGCTCCGCAT 62.881 66.667 0.00 0.00 0.00 4.73
6934 9665 2.505982 CAGATAGGGCCCACACGG 59.494 66.667 27.56 11.13 0.00 4.94
6935 9666 2.203070 GCAGATAGGGCCCACACG 60.203 66.667 27.56 9.35 0.00 4.49
6936 9667 2.193248 GGCAGATAGGGCCCACAC 59.807 66.667 27.56 14.35 45.87 3.82
6942 9673 0.603975 GTCGGATTGGCAGATAGGGC 60.604 60.000 0.00 0.00 0.00 5.19
6943 9674 0.758734 TGTCGGATTGGCAGATAGGG 59.241 55.000 0.00 0.00 0.00 3.53
6944 9675 2.420642 CATGTCGGATTGGCAGATAGG 58.579 52.381 0.00 0.00 0.00 2.57
6945 9676 2.224378 ACCATGTCGGATTGGCAGATAG 60.224 50.000 9.19 0.00 38.63 2.08
6946 9677 1.768275 ACCATGTCGGATTGGCAGATA 59.232 47.619 9.19 0.00 38.63 1.98
6947 9678 0.548031 ACCATGTCGGATTGGCAGAT 59.452 50.000 9.19 0.00 38.63 2.90
6948 9679 1.199615 TACCATGTCGGATTGGCAGA 58.800 50.000 9.19 0.00 38.63 4.26
6949 9680 1.942657 CTTACCATGTCGGATTGGCAG 59.057 52.381 9.19 3.66 38.63 4.85
6950 9681 2.016604 GCTTACCATGTCGGATTGGCA 61.017 52.381 9.19 0.00 38.63 4.92
6951 9682 0.663153 GCTTACCATGTCGGATTGGC 59.337 55.000 9.19 0.00 38.63 4.52
6952 9683 0.937304 CGCTTACCATGTCGGATTGG 59.063 55.000 8.03 8.03 38.63 3.16
6953 9684 1.327460 CACGCTTACCATGTCGGATTG 59.673 52.381 0.00 0.00 38.63 2.67
6954 9685 1.651987 CACGCTTACCATGTCGGATT 58.348 50.000 0.00 0.00 38.63 3.01
6955 9686 0.179084 CCACGCTTACCATGTCGGAT 60.179 55.000 0.00 0.00 38.63 4.18
6956 9687 1.216977 CCACGCTTACCATGTCGGA 59.783 57.895 0.00 0.00 38.63 4.55
6957 9688 2.461110 GCCACGCTTACCATGTCGG 61.461 63.158 0.00 0.00 42.50 4.79
6958 9689 2.461110 GGCCACGCTTACCATGTCG 61.461 63.158 0.00 0.00 0.00 4.35
6959 9690 1.369091 CTGGCCACGCTTACCATGTC 61.369 60.000 0.00 0.00 31.79 3.06
6960 9691 1.377202 CTGGCCACGCTTACCATGT 60.377 57.895 0.00 0.00 31.79 3.21
6961 9692 2.114670 CCTGGCCACGCTTACCATG 61.115 63.158 0.00 0.00 31.79 3.66
6962 9693 2.272146 CCTGGCCACGCTTACCAT 59.728 61.111 0.00 0.00 31.79 3.55
6963 9694 3.246112 ACCTGGCCACGCTTACCA 61.246 61.111 0.00 0.00 0.00 3.25
6964 9695 2.746277 CACCTGGCCACGCTTACC 60.746 66.667 0.00 0.00 0.00 2.85
6965 9696 3.431725 GCACCTGGCCACGCTTAC 61.432 66.667 0.00 0.00 36.11 2.34
6966 9697 2.762969 AATGCACCTGGCCACGCTTA 62.763 55.000 0.00 0.00 43.89 3.09
6967 9698 4.666253 ATGCACCTGGCCACGCTT 62.666 61.111 0.00 0.00 43.89 4.68
6968 9699 4.666253 AATGCACCTGGCCACGCT 62.666 61.111 0.00 0.00 43.89 5.07
6969 9700 4.120331 GAATGCACCTGGCCACGC 62.120 66.667 0.00 5.60 43.89 5.34
6970 9701 3.803082 CGAATGCACCTGGCCACG 61.803 66.667 0.00 0.00 43.89 4.94
6971 9702 3.443045 CCGAATGCACCTGGCCAC 61.443 66.667 0.00 0.00 43.89 5.01
6972 9703 4.738998 CCCGAATGCACCTGGCCA 62.739 66.667 4.71 4.71 43.89 5.36
6975 9706 4.431131 AGGCCCGAATGCACCTGG 62.431 66.667 0.00 0.00 0.00 4.45
6976 9707 2.825836 GAGGCCCGAATGCACCTG 60.826 66.667 0.00 0.00 30.95 4.00
6977 9708 4.115199 GGAGGCCCGAATGCACCT 62.115 66.667 0.00 0.00 34.43 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.