Multiple sequence alignment - TraesCS4A01G225100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G225100 chr4A 100.000 8160 0 0 1 8160 532999510 533007669 0.000000e+00 15069.0
1 TraesCS4A01G225100 chr4A 100.000 31 0 0 3186 3216 571652541 571652571 3.180000e-04 58.4
2 TraesCS4A01G225100 chr4A 100.000 29 0 0 7563 7591 321925102 321925074 4.000000e-03 54.7
3 TraesCS4A01G225100 chr4D 93.164 3745 144 48 3630 7345 63255190 63251529 0.000000e+00 5395.0
4 TraesCS4A01G225100 chr4D 91.483 1726 86 35 1 1719 63257851 63256180 0.000000e+00 2316.0
5 TraesCS4A01G225100 chr4D 91.549 213 16 2 1794 2006 63256123 63255913 8.010000e-75 292.0
6 TraesCS4A01G225100 chr4D 84.615 65 6 4 3186 3248 31204534 31204472 2.460000e-05 62.1
7 TraesCS4A01G225100 chr4D 100.000 28 0 0 7564 7591 472441813 472441840 1.500000e-02 52.8
8 TraesCS4A01G225100 chr4B 92.992 3596 167 37 3617 7160 93774182 93770620 0.000000e+00 5166.0
9 TraesCS4A01G225100 chr4B 88.397 2034 127 49 1 2006 93777008 93775056 0.000000e+00 2348.0
10 TraesCS4A01G225100 chr4B 89.924 655 53 11 7512 8160 93769917 93769270 0.000000e+00 832.0
11 TraesCS4A01G225100 chr4B 88.793 348 25 5 7189 7530 93770559 93770220 1.640000e-111 414.0
12 TraesCS4A01G225100 chr5A 93.075 982 35 7 2040 3014 579274241 579273286 0.000000e+00 1406.0
13 TraesCS4A01G225100 chr5A 86.848 441 43 11 2585 3014 512586587 512586151 5.730000e-131 479.0
14 TraesCS4A01G225100 chr5A 86.479 355 36 9 2040 2384 512587098 512586746 5.980000e-101 379.0
15 TraesCS4A01G225100 chr5A 85.507 276 26 12 2117 2384 493012681 493012950 8.070000e-70 276.0
16 TraesCS4A01G225100 chr5A 92.683 82 6 0 2040 2121 492949248 492949329 1.440000e-22 119.0
17 TraesCS4A01G225100 chr5A 100.000 29 0 0 7563 7591 1838950 1838922 4.000000e-03 54.7
18 TraesCS4A01G225100 chr5A 100.000 29 0 0 7564 7592 489910647 489910619 4.000000e-03 54.7
19 TraesCS4A01G225100 chr1D 94.789 806 27 6 2222 3013 49426766 49427570 0.000000e+00 1242.0
20 TraesCS4A01G225100 chr1D 89.112 349 27 9 2043 2384 419995270 419995614 2.720000e-114 424.0
21 TraesCS4A01G225100 chr1D 94.215 121 6 1 2034 2153 49426647 49426767 5.030000e-42 183.0
22 TraesCS4A01G225100 chr7D 86.986 438 44 10 2585 3014 620123822 620124254 1.590000e-131 481.0
23 TraesCS4A01G225100 chr7D 82.375 261 37 7 7659 7913 274697483 274697740 1.380000e-52 219.0
24 TraesCS4A01G225100 chr3D 81.958 521 46 29 2040 2521 610371075 610371586 1.650000e-106 398.0
25 TraesCS4A01G225100 chr3D 87.558 217 17 7 2802 3009 610371963 610372178 8.180000e-60 243.0
26 TraesCS4A01G225100 chr5D 84.884 344 37 9 2663 2995 389642695 389643034 4.720000e-87 333.0
27 TraesCS4A01G225100 chr5D 83.462 260 30 9 7659 7909 233038329 233038074 6.370000e-56 230.0
28 TraesCS4A01G225100 chr2B 91.020 245 21 1 2500 2744 181351099 181350856 6.110000e-86 329.0
29 TraesCS4A01G225100 chr2B 86.667 285 25 7 2737 3014 181322313 181322035 3.700000e-78 303.0
30 TraesCS4A01G225100 chr2B 83.401 247 31 9 7668 7909 443157591 443157350 3.830000e-53 220.0
31 TraesCS4A01G225100 chr2B 85.321 218 25 6 7695 7909 494401791 494402004 1.380000e-52 219.0
32 TraesCS4A01G225100 chr5B 84.711 242 35 2 2032 2272 304295685 304295445 2.940000e-59 241.0
33 TraesCS4A01G225100 chr5B 83.333 258 33 7 7659 7909 271950222 271950476 6.370000e-56 230.0
34 TraesCS4A01G225100 chr6B 85.253 217 25 6 7695 7909 638621897 638622108 4.960000e-52 217.0
35 TraesCS4A01G225100 chr7A 82.061 262 37 7 7659 7913 307959944 307960202 1.780000e-51 215.0
36 TraesCS4A01G225100 chr7A 82.500 240 35 6 7672 7907 555432478 555432714 3.860000e-48 204.0
37 TraesCS4A01G225100 chr7A 73.282 393 79 17 2161 2547 725681835 725682207 4.000000e-23 121.0
38 TraesCS4A01G225100 chr1A 83.796 216 34 1 2058 2272 27277972 27278187 3.860000e-48 204.0
39 TraesCS4A01G225100 chr1A 100.000 29 0 0 7563 7591 501018056 501018028 4.000000e-03 54.7
40 TraesCS4A01G225100 chr3B 100.000 29 0 0 7563 7591 822772763 822772735 4.000000e-03 54.7
41 TraesCS4A01G225100 chr2D 100.000 29 0 0 7563 7591 529692982 529693010 4.000000e-03 54.7
42 TraesCS4A01G225100 chr2D 100.000 28 0 0 2183 2210 534403756 534403729 1.500000e-02 52.8
43 TraesCS4A01G225100 chr1B 100.000 29 0 0 7563 7591 364920959 364920987 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G225100 chr4A 532999510 533007669 8159 False 15069.000000 15069 100.000000 1 8160 1 chr4A.!!$F1 8159
1 TraesCS4A01G225100 chr4D 63251529 63257851 6322 True 2667.666667 5395 92.065333 1 7345 3 chr4D.!!$R2 7344
2 TraesCS4A01G225100 chr4B 93769270 93777008 7738 True 2190.000000 5166 90.026500 1 8160 4 chr4B.!!$R1 8159
3 TraesCS4A01G225100 chr5A 579273286 579274241 955 True 1406.000000 1406 93.075000 2040 3014 1 chr5A.!!$R3 974
4 TraesCS4A01G225100 chr5A 512586151 512587098 947 True 429.000000 479 86.663500 2040 3014 2 chr5A.!!$R4 974
5 TraesCS4A01G225100 chr1D 49426647 49427570 923 False 712.500000 1242 94.502000 2034 3013 2 chr1D.!!$F2 979
6 TraesCS4A01G225100 chr3D 610371075 610372178 1103 False 320.500000 398 84.758000 2040 3009 2 chr3D.!!$F1 969

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
269 276 0.091344 CGCTTAGCACAAACGAGACG 59.909 55.000 4.70 0.00 0.00 4.18 F
823 874 0.179045 GCTGGTGCGTTGGAGGATAT 60.179 55.000 0.00 0.00 0.00 1.63 F
1696 1749 0.389025 GTTGGGCTGGGTCACTTTTG 59.611 55.000 0.00 0.00 0.00 2.44 F
1787 1841 0.777446 TGCTTTCTGGCTTTACCCCT 59.223 50.000 0.00 0.00 37.83 4.79 F
3154 3493 0.324943 ACCAGCGATTTGTACCAGCT 59.675 50.000 0.00 0.00 38.90 4.24 F
3954 4803 0.108615 CACCGAGTGGCCTACTTGAG 60.109 60.000 18.84 13.09 42.51 3.02 F
5022 5892 0.323725 CCCCCATTTGGTCAGAGGTG 60.324 60.000 0.00 0.00 0.00 4.00 F
5466 6347 0.853530 GCCATATTTCCCCCTCCACT 59.146 55.000 0.00 0.00 0.00 4.00 F
5611 6492 1.065564 TGGATGCGACATGACCATTCA 60.066 47.619 0.00 1.72 35.73 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1327 1378 0.681887 CACCTGCAATCATCAGCCCA 60.682 55.0 0.00 0.0 0.00 5.36 R
2421 2570 0.249322 CAGAGGTCAACAACGACGGT 60.249 55.0 0.00 0.0 36.73 4.83 R
2769 2927 0.317436 GTCGCCTCTATGCTCACGAG 60.317 60.0 0.00 0.0 0.00 4.18 R
3529 4358 1.004595 GCGTCACTTATTTCCGGACC 58.995 55.0 1.83 0.0 0.00 4.46 R
4143 5013 0.036388 CGTACTTCACCTGCCCATGT 60.036 55.0 0.00 0.0 0.00 3.21 R
5178 6048 0.036858 TGCCGTTCCGATCATCACAA 60.037 50.0 0.00 0.0 0.00 3.33 R
6882 7771 0.184211 CCTGCACATCCATCCATCCA 59.816 55.0 0.00 0.0 0.00 3.41 R
6883 7772 0.184451 ACCTGCACATCCATCCATCC 59.816 55.0 0.00 0.0 0.00 3.51 R
7491 8429 0.109913 ATCGCCCAGACATGCATCAT 59.890 50.0 0.00 0.0 0.00 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.768757 TGGATTGGATTGGCCTAAGTTTG 59.231 43.478 3.32 0.00 37.63 2.93
36 37 1.913419 CCTAAGTTTGGGGAGCCAGTA 59.087 52.381 0.00 0.00 0.00 2.74
75 76 3.282885 CTTGTCAGGGCTTATCTTTCCC 58.717 50.000 0.00 0.00 40.36 3.97
159 160 0.729116 CGCCTTGGATCATGTGTCAC 59.271 55.000 0.00 0.00 0.00 3.67
176 177 1.202758 TCACCCATCACACAACAGTCC 60.203 52.381 0.00 0.00 0.00 3.85
207 214 0.388649 CTATCTACCGTGGCGCCATC 60.389 60.000 35.23 24.05 0.00 3.51
216 223 0.744414 GTGGCGCCATCACAGTACAT 60.744 55.000 35.23 0.00 35.39 2.29
269 276 0.091344 CGCTTAGCACAAACGAGACG 59.909 55.000 4.70 0.00 0.00 4.18
284 292 8.938906 ACAAACGAGACGGTGTAATAATTAATT 58.061 29.630 5.89 5.89 29.97 1.40
316 324 0.512952 GACACGCATCACACAGAACC 59.487 55.000 0.00 0.00 0.00 3.62
354 366 1.343506 ACAAAACGATACGCCGACTC 58.656 50.000 0.00 0.00 0.00 3.36
370 382 2.844804 CGACTCGTGAAAAGATCGTACC 59.155 50.000 0.00 0.00 0.00 3.34
453 467 4.388378 AAAGCACTAGGAGGAACGATAC 57.612 45.455 0.00 0.00 0.00 2.24
496 510 4.961637 TGCTCAGGCATATTGCGT 57.038 50.000 0.00 0.00 46.21 5.24
497 511 2.694065 TGCTCAGGCATATTGCGTC 58.306 52.632 0.00 0.00 46.21 5.19
498 512 1.153597 TGCTCAGGCATATTGCGTCG 61.154 55.000 0.00 0.00 46.21 5.12
499 513 0.875908 GCTCAGGCATATTGCGTCGA 60.876 55.000 0.00 0.00 46.21 4.20
575 589 3.941188 CCACTCGCCGGGCCATAT 61.941 66.667 14.55 0.00 0.00 1.78
576 590 2.357517 CACTCGCCGGGCCATATC 60.358 66.667 14.55 0.00 0.00 1.63
577 591 2.842462 ACTCGCCGGGCCATATCA 60.842 61.111 14.55 0.00 0.00 2.15
656 670 3.244735 GCTTTATTCCTCTCCTCCCATCC 60.245 52.174 0.00 0.00 0.00 3.51
657 671 2.310779 TATTCCTCTCCTCCCATCCG 57.689 55.000 0.00 0.00 0.00 4.18
658 672 1.124477 ATTCCTCTCCTCCCATCCGC 61.124 60.000 0.00 0.00 0.00 5.54
659 673 3.237741 CCTCTCCTCCCATCCGCC 61.238 72.222 0.00 0.00 0.00 6.13
697 711 1.602165 CGCATAACCGCCGTAGAATCT 60.602 52.381 0.00 0.00 0.00 2.40
710 761 4.302455 CGTAGAATCTCACACCCATCATC 58.698 47.826 0.00 0.00 0.00 2.92
711 762 4.202151 CGTAGAATCTCACACCCATCATCA 60.202 45.833 0.00 0.00 0.00 3.07
737 788 9.175060 ACACAAAAACAAAACAAAGCAAAATAC 57.825 25.926 0.00 0.00 0.00 1.89
739 790 9.605955 ACAAAAACAAAACAAAGCAAAATACTC 57.394 25.926 0.00 0.00 0.00 2.59
741 792 8.560355 AAAACAAAACAAAGCAAAATACTCCT 57.440 26.923 0.00 0.00 0.00 3.69
743 794 8.642908 AACAAAACAAAGCAAAATACTCCTAC 57.357 30.769 0.00 0.00 0.00 3.18
745 796 8.254508 ACAAAACAAAGCAAAATACTCCTACAA 58.745 29.630 0.00 0.00 0.00 2.41
747 798 9.660180 AAAACAAAGCAAAATACTCCTACAAAA 57.340 25.926 0.00 0.00 0.00 2.44
754 805 9.392259 AGCAAAATACTCCTACAAAATAGTACC 57.608 33.333 0.00 0.00 0.00 3.34
755 806 8.618677 GCAAAATACTCCTACAAAATAGTACCC 58.381 37.037 0.00 0.00 0.00 3.69
823 874 0.179045 GCTGGTGCGTTGGAGGATAT 60.179 55.000 0.00 0.00 0.00 1.63
824 875 1.070134 GCTGGTGCGTTGGAGGATATA 59.930 52.381 0.00 0.00 0.00 0.86
825 876 2.868044 GCTGGTGCGTTGGAGGATATAG 60.868 54.545 0.00 0.00 0.00 1.31
846 897 1.078143 GCACCCGGCTTCATCTCTT 60.078 57.895 0.00 0.00 40.25 2.85
859 910 4.510167 TCATCTCTTTCCATCTTTCCCC 57.490 45.455 0.00 0.00 0.00 4.81
876 927 2.047844 CCTGCACCACACCTCGAG 60.048 66.667 5.13 5.13 0.00 4.04
941 992 2.167861 GCCGATCGTTGTCAGGCTC 61.168 63.158 15.09 0.00 44.06 4.70
961 1012 0.811281 GGATTTTCAGTGAAGGGGCG 59.189 55.000 5.56 0.00 0.00 6.13
976 1027 2.028337 GCGGCAGAGTAGCTAGCC 59.972 66.667 12.13 10.91 43.61 3.93
995 1046 3.134703 TAGCTCGAGGGAGGCCGAT 62.135 63.158 15.58 0.00 40.80 4.18
1218 1269 3.392947 TCCACAAGACATGGACAAAGGTA 59.607 43.478 0.00 0.00 41.47 3.08
1225 1276 7.228706 ACAAGACATGGACAAAGGTAAGTAAAG 59.771 37.037 0.00 0.00 0.00 1.85
1229 1280 7.458397 ACATGGACAAAGGTAAGTAAAGATCA 58.542 34.615 0.00 0.00 0.00 2.92
1233 1284 6.128363 GGACAAAGGTAAGTAAAGATCAACCG 60.128 42.308 0.00 0.00 32.18 4.44
1295 1346 3.126879 TGCTTGCTTGATCGCCGG 61.127 61.111 0.00 0.00 0.00 6.13
1327 1378 1.066858 ACGATGGCTGACGAACAAGAT 60.067 47.619 0.00 0.00 0.00 2.40
1439 1491 1.362406 GGCAGAAGAAGCAGGTACGC 61.362 60.000 0.00 0.00 0.00 4.42
1440 1492 1.687494 GCAGAAGAAGCAGGTACGCG 61.687 60.000 3.53 3.53 36.85 6.01
1449 1501 3.374402 AGGTACGCGCTGCTCTGT 61.374 61.111 5.73 0.00 0.00 3.41
1575 1627 3.202906 GGTTTCCCTTTTGCTTCAAACC 58.797 45.455 0.00 0.00 36.89 3.27
1577 1629 2.060050 TCCCTTTTGCTTCAAACCGA 57.940 45.000 0.00 0.00 32.79 4.69
1611 1663 3.810896 GTTCAATGTCGGCGGCCC 61.811 66.667 14.55 0.09 0.00 5.80
1646 1698 0.909610 TAGGGCACTTGGGAGGTCTG 60.910 60.000 0.00 0.00 0.00 3.51
1669 1722 4.785341 GCCTTAATTGTCCGCGAGTTTATG 60.785 45.833 8.23 1.04 0.00 1.90
1678 1731 4.093850 GTCCGCGAGTTTATGGTAATTTGT 59.906 41.667 8.23 0.00 0.00 2.83
1696 1749 0.389025 GTTGGGCTGGGTCACTTTTG 59.611 55.000 0.00 0.00 0.00 2.44
1786 1840 1.177401 CTGCTTTCTGGCTTTACCCC 58.823 55.000 0.00 0.00 37.83 4.95
1787 1841 0.777446 TGCTTTCTGGCTTTACCCCT 59.223 50.000 0.00 0.00 37.83 4.79
1788 1842 1.989586 TGCTTTCTGGCTTTACCCCTA 59.010 47.619 0.00 0.00 37.83 3.53
1789 1843 2.026262 TGCTTTCTGGCTTTACCCCTAG 60.026 50.000 0.00 0.00 37.83 3.02
1792 1846 4.663334 CTTTCTGGCTTTACCCCTAGTTT 58.337 43.478 0.00 0.00 37.83 2.66
1805 1871 4.195416 CCCCTAGTTTGAGAAATGAGAGC 58.805 47.826 0.00 0.00 0.00 4.09
1809 1875 6.348868 CCCTAGTTTGAGAAATGAGAGCAAAC 60.349 42.308 0.00 0.00 45.10 2.93
1815 1881 4.212004 TGAGAAATGAGAGCAAACTTCACG 59.788 41.667 0.00 0.00 0.00 4.35
1818 1884 5.406780 AGAAATGAGAGCAAACTTCACGTAG 59.593 40.000 0.00 0.00 0.00 3.51
1822 1888 2.404215 GAGCAAACTTCACGTAGCTCA 58.596 47.619 7.29 0.00 45.65 4.26
1870 1936 1.680105 CCGCGACCACACGTATTGTC 61.680 60.000 8.23 0.00 35.67 3.18
1946 2012 3.204827 GCGCATAGGCACACCCTG 61.205 66.667 0.30 0.00 45.91 4.45
1982 2048 7.285788 CAGCATGCACATTTACTTTTCTTTTC 58.714 34.615 21.98 0.00 0.00 2.29
2006 2072 8.974060 TCTTTTGAGAAAACAGGTACACTTAT 57.026 30.769 0.00 0.00 0.00 1.73
2010 2076 9.616156 TTTGAGAAAACAGGTACACTTATAACA 57.384 29.630 0.00 0.00 0.00 2.41
2011 2077 8.597662 TGAGAAAACAGGTACACTTATAACAC 57.402 34.615 0.00 0.00 0.00 3.32
2012 2078 7.383029 TGAGAAAACAGGTACACTTATAACACG 59.617 37.037 0.00 0.00 0.00 4.49
2013 2079 7.212274 AGAAAACAGGTACACTTATAACACGT 58.788 34.615 0.00 0.00 0.00 4.49
2014 2080 7.712205 AGAAAACAGGTACACTTATAACACGTT 59.288 33.333 0.00 0.00 0.00 3.99
2015 2081 6.774354 AACAGGTACACTTATAACACGTTG 57.226 37.500 0.00 0.00 0.00 4.10
2016 2082 5.846203 ACAGGTACACTTATAACACGTTGT 58.154 37.500 0.00 0.00 0.00 3.32
2017 2083 6.282930 ACAGGTACACTTATAACACGTTGTT 58.717 36.000 8.15 8.15 43.88 2.83
2018 2084 6.201425 ACAGGTACACTTATAACACGTTGTTG 59.799 38.462 11.90 0.00 41.30 3.33
2019 2085 6.421501 CAGGTACACTTATAACACGTTGTTGA 59.578 38.462 11.90 0.52 41.30 3.18
2020 2086 6.643770 AGGTACACTTATAACACGTTGTTGAG 59.356 38.462 11.90 9.67 41.30 3.02
2021 2087 6.642131 GGTACACTTATAACACGTTGTTGAGA 59.358 38.462 11.90 0.00 41.30 3.27
2022 2088 7.169645 GGTACACTTATAACACGTTGTTGAGAA 59.830 37.037 11.90 4.67 41.30 2.87
2023 2089 7.542534 ACACTTATAACACGTTGTTGAGAAA 57.457 32.000 11.90 3.08 41.30 2.52
2024 2090 7.976826 ACACTTATAACACGTTGTTGAGAAAA 58.023 30.769 11.90 0.00 41.30 2.29
2025 2091 7.906527 ACACTTATAACACGTTGTTGAGAAAAC 59.093 33.333 11.90 0.00 41.30 2.43
2026 2092 7.906010 CACTTATAACACGTTGTTGAGAAAACA 59.094 33.333 11.90 0.00 41.30 2.83
2027 2093 8.120465 ACTTATAACACGTTGTTGAGAAAACAG 58.880 33.333 11.90 2.61 41.30 3.16
2028 2094 3.757745 ACACGTTGTTGAGAAAACAGG 57.242 42.857 0.00 0.00 0.00 4.00
2029 2095 3.078837 ACACGTTGTTGAGAAAACAGGT 58.921 40.909 0.00 0.00 0.00 4.00
2030 2096 4.255301 ACACGTTGTTGAGAAAACAGGTA 58.745 39.130 0.00 0.00 0.00 3.08
2031 2097 4.093850 ACACGTTGTTGAGAAAACAGGTAC 59.906 41.667 0.00 0.00 0.00 3.34
2032 2098 4.093703 CACGTTGTTGAGAAAACAGGTACA 59.906 41.667 0.00 0.00 0.00 2.90
2033 2099 4.093850 ACGTTGTTGAGAAAACAGGTACAC 59.906 41.667 0.00 0.00 0.00 2.90
2034 2100 4.331717 CGTTGTTGAGAAAACAGGTACACT 59.668 41.667 0.00 0.00 0.00 3.55
2035 2101 5.163794 CGTTGTTGAGAAAACAGGTACACTT 60.164 40.000 0.00 0.00 0.00 3.16
2036 2102 6.036300 CGTTGTTGAGAAAACAGGTACACTTA 59.964 38.462 0.00 0.00 0.00 2.24
2037 2103 7.413219 CGTTGTTGAGAAAACAGGTACACTTAA 60.413 37.037 0.00 0.00 0.00 1.85
2038 2104 7.925043 TGTTGAGAAAACAGGTACACTTAAA 57.075 32.000 0.00 0.00 0.00 1.52
2108 2174 9.109533 CACATGTTTTCGGTTATAACAAACTAC 57.890 33.333 21.30 13.22 35.62 2.73
2137 2203 5.929278 TGTTTGGATAACGTAACAAATCCG 58.071 37.500 9.16 0.00 40.71 4.18
2227 2300 6.128634 ACGTTTTTCTATAAACCAGCTCTTCG 60.129 38.462 0.00 0.00 35.15 3.79
2421 2570 4.108299 ACCATTGCCATCGCCGGA 62.108 61.111 5.05 0.00 0.00 5.14
2651 2807 3.937706 GTGCTAGATGCTTGTCTCAACAT 59.062 43.478 0.00 0.00 43.37 2.71
2672 2828 3.631145 TTTGATCTTGAGTTGTGCAGC 57.369 42.857 0.00 0.00 0.00 5.25
2704 2860 6.994496 CAGATTCCCTGTATGCTAATTCTTGA 59.006 38.462 0.00 0.00 38.10 3.02
2717 2873 8.806429 TGCTAATTCTTGATCTTCAATGGTTA 57.194 30.769 0.00 0.00 35.59 2.85
2793 2951 4.266070 GCATAGAGGCGACGGCGA 62.266 66.667 18.90 5.97 41.24 5.54
2794 2952 2.645567 CATAGAGGCGACGGCGAT 59.354 61.111 18.90 0.00 41.24 4.58
2798 2962 1.452953 TAGAGGCGACGGCGATCATT 61.453 55.000 18.90 0.00 41.24 2.57
3014 3350 5.427036 TTCGTTTATCCAAACAACCACTC 57.573 39.130 1.65 0.00 43.58 3.51
3015 3351 4.710324 TCGTTTATCCAAACAACCACTCT 58.290 39.130 1.65 0.00 43.58 3.24
3016 3352 4.753107 TCGTTTATCCAAACAACCACTCTC 59.247 41.667 1.65 0.00 43.58 3.20
3017 3353 4.755123 CGTTTATCCAAACAACCACTCTCT 59.245 41.667 1.65 0.00 43.58 3.10
3018 3354 5.107065 CGTTTATCCAAACAACCACTCTCTC 60.107 44.000 1.65 0.00 43.58 3.20
3045 3381 5.444744 TTAAGCAAAGGCCTAACTCCATA 57.555 39.130 5.16 0.00 42.56 2.74
3046 3382 4.526438 AAGCAAAGGCCTAACTCCATAT 57.474 40.909 5.16 0.00 42.56 1.78
3077 3413 4.460263 TCCACAAGTCTTTACAAGCACAT 58.540 39.130 0.00 0.00 0.00 3.21
3079 3415 5.359576 TCCACAAGTCTTTACAAGCACATTT 59.640 36.000 0.00 0.00 0.00 2.32
3097 3436 8.664798 AGCACATTTTTACAGAAAAAGAAAACC 58.335 29.630 2.47 0.00 45.33 3.27
3101 3440 9.753669 CATTTTTACAGAAAAAGAAAACCACAC 57.246 29.630 2.47 0.00 45.33 3.82
3107 3446 5.879777 CAGAAAAAGAAAACCACACCCAATT 59.120 36.000 0.00 0.00 0.00 2.32
3111 3450 3.370104 AGAAAACCACACCCAATTCACA 58.630 40.909 0.00 0.00 0.00 3.58
3112 3451 3.132111 AGAAAACCACACCCAATTCACAC 59.868 43.478 0.00 0.00 0.00 3.82
3133 3472 8.085909 TCACACTTACTTTGATGTCTCGATTTA 58.914 33.333 0.00 0.00 0.00 1.40
3143 3482 4.848562 TGTCTCGATTTATACCAGCGAT 57.151 40.909 0.00 0.00 0.00 4.58
3145 3484 5.597806 TGTCTCGATTTATACCAGCGATTT 58.402 37.500 0.00 0.00 0.00 2.17
3146 3485 5.462068 TGTCTCGATTTATACCAGCGATTTG 59.538 40.000 0.00 0.00 0.00 2.32
3150 3489 5.693104 TCGATTTATACCAGCGATTTGTACC 59.307 40.000 0.00 0.00 0.00 3.34
3151 3490 5.464057 CGATTTATACCAGCGATTTGTACCA 59.536 40.000 0.00 0.00 0.00 3.25
3152 3491 6.346598 CGATTTATACCAGCGATTTGTACCAG 60.347 42.308 0.00 0.00 0.00 4.00
3153 3492 2.018542 TACCAGCGATTTGTACCAGC 57.981 50.000 0.00 0.00 0.00 4.85
3154 3493 0.324943 ACCAGCGATTTGTACCAGCT 59.675 50.000 0.00 0.00 38.90 4.24
3155 3494 1.553248 ACCAGCGATTTGTACCAGCTA 59.447 47.619 0.00 0.00 36.28 3.32
3156 3495 1.933853 CCAGCGATTTGTACCAGCTAC 59.066 52.381 0.00 0.00 36.28 3.58
3162 3501 4.442706 CGATTTGTACCAGCTACAAGGAT 58.557 43.478 1.11 0.00 44.50 3.24
3189 3528 1.464608 CTAGTTGCACATGTTGGGACG 59.535 52.381 0.00 0.00 0.00 4.79
3191 3530 1.202710 AGTTGCACATGTTGGGACGTA 60.203 47.619 0.00 0.00 0.00 3.57
3220 3559 1.482278 CTCGCGAGCTCAAATAGTCC 58.518 55.000 25.07 0.00 0.00 3.85
3237 3576 8.792633 CAAATAGTCCTGGATGAACAGTAAAAA 58.207 33.333 0.00 0.00 36.75 1.94
3278 3626 8.977505 TGTAGAAAGCTTTGATAAATGTTTTGC 58.022 29.630 18.30 0.00 0.00 3.68
3283 3631 4.150451 GCTTTGATAAATGTTTTGCGTGCT 59.850 37.500 0.00 0.00 0.00 4.40
3284 3632 5.333263 GCTTTGATAAATGTTTTGCGTGCTT 60.333 36.000 0.00 0.00 0.00 3.91
3285 3633 5.573296 TTGATAAATGTTTTGCGTGCTTG 57.427 34.783 0.00 0.00 0.00 4.01
3286 3634 3.428198 TGATAAATGTTTTGCGTGCTTGC 59.572 39.130 0.00 0.00 0.00 4.01
3304 3652 7.476183 CGTGCTTGCAAAAATTTATCATGAAAG 59.524 33.333 0.00 0.93 31.15 2.62
3331 3679 4.811555 TCATGGAAGTCGTGACAAAAAG 57.188 40.909 2.44 0.00 36.54 2.27
3339 3687 6.183359 GGAAGTCGTGACAAAAAGAACAAAAC 60.183 38.462 2.44 0.00 0.00 2.43
3341 3689 4.918583 GTCGTGACAAAAAGAACAAAACCA 59.081 37.500 0.00 0.00 0.00 3.67
3347 3695 5.304778 ACAAAAAGAACAAAACCAGTGCTT 58.695 33.333 0.00 0.00 36.41 3.91
3348 3696 5.408299 ACAAAAAGAACAAAACCAGTGCTTC 59.592 36.000 0.00 0.00 33.73 3.86
3413 3895 5.892160 TTCTTTGCCATGATTTCAGAGAG 57.108 39.130 0.00 0.00 0.00 3.20
3418 4245 4.132336 TGCCATGATTTCAGAGAGTATGC 58.868 43.478 0.00 0.00 0.00 3.14
3429 4256 2.426738 AGAGAGTATGCAGAGACAGTGC 59.573 50.000 0.00 0.00 41.59 4.40
3446 4273 1.716581 GTGCGTCTCTTCTCACTTTCG 59.283 52.381 0.00 0.00 0.00 3.46
3479 4306 4.846779 TTGTTCCAAACAGGCATTAGTC 57.153 40.909 0.00 0.00 43.27 2.59
3487 4316 5.180492 CCAAACAGGCATTAGTCGTAGAAAA 59.820 40.000 0.00 0.00 39.69 2.29
3488 4317 6.307155 CAAACAGGCATTAGTCGTAGAAAAG 58.693 40.000 0.00 0.00 39.69 2.27
3489 4318 5.401531 ACAGGCATTAGTCGTAGAAAAGA 57.598 39.130 0.00 0.00 39.69 2.52
3490 4319 5.169295 ACAGGCATTAGTCGTAGAAAAGAC 58.831 41.667 0.00 0.00 39.69 3.01
3491 4320 4.265556 CAGGCATTAGTCGTAGAAAAGACG 59.734 45.833 0.00 0.00 41.86 4.18
3492 4321 4.082354 AGGCATTAGTCGTAGAAAAGACGT 60.082 41.667 0.00 0.00 41.86 4.34
3493 4322 4.264849 GGCATTAGTCGTAGAAAAGACGTC 59.735 45.833 7.70 7.70 41.86 4.34
3494 4323 4.855388 GCATTAGTCGTAGAAAAGACGTCA 59.145 41.667 19.50 0.00 41.86 4.35
3546 4375 2.165030 TCTCGGTCCGGAAATAAGTGAC 59.835 50.000 5.23 0.00 0.00 3.67
3547 4376 1.135315 TCGGTCCGGAAATAAGTGACG 60.135 52.381 5.23 0.00 0.00 4.35
3553 4382 2.159707 CCGGAAATAAGTGACGCTGTTG 60.160 50.000 0.00 0.00 0.00 3.33
3568 4397 6.924612 TGACGCTGTTGTAGTTCAAAATACTA 59.075 34.615 2.53 0.00 37.81 1.82
3577 4406 4.813027 AGTTCAAAATACTACGGAAGCGA 58.187 39.130 0.00 0.00 0.00 4.93
3578 4407 5.232463 AGTTCAAAATACTACGGAAGCGAA 58.768 37.500 0.00 0.00 0.00 4.70
3579 4408 5.873164 AGTTCAAAATACTACGGAAGCGAAT 59.127 36.000 0.00 0.00 0.00 3.34
3580 4409 5.961395 TCAAAATACTACGGAAGCGAATC 57.039 39.130 0.00 0.00 0.00 2.52
3581 4410 5.657474 TCAAAATACTACGGAAGCGAATCT 58.343 37.500 0.00 0.00 0.00 2.40
3582 4411 6.103997 TCAAAATACTACGGAAGCGAATCTT 58.896 36.000 0.00 0.00 37.83 2.40
3583 4412 6.592607 TCAAAATACTACGGAAGCGAATCTTT 59.407 34.615 0.00 0.00 34.56 2.52
3584 4413 6.980051 AAATACTACGGAAGCGAATCTTTT 57.020 33.333 0.00 0.00 34.56 2.27
3585 4414 6.980051 AATACTACGGAAGCGAATCTTTTT 57.020 33.333 0.00 0.00 34.56 1.94
3607 4436 6.790285 TTTTTACCGAAGCGAATCTAACTT 57.210 33.333 0.00 0.00 0.00 2.66
3608 4437 5.773239 TTTACCGAAGCGAATCTAACTTG 57.227 39.130 0.00 0.00 0.00 3.16
3609 4438 3.314541 ACCGAAGCGAATCTAACTTGT 57.685 42.857 0.00 0.00 0.00 3.16
3610 4439 3.251571 ACCGAAGCGAATCTAACTTGTC 58.748 45.455 0.00 0.00 0.00 3.18
3611 4440 2.603560 CCGAAGCGAATCTAACTTGTCC 59.396 50.000 0.00 0.00 0.00 4.02
3612 4441 2.603560 CGAAGCGAATCTAACTTGTCCC 59.396 50.000 0.00 0.00 0.00 4.46
3615 4444 4.222124 AGCGAATCTAACTTGTCCCATT 57.778 40.909 0.00 0.00 0.00 3.16
3624 4453 6.542821 TCTAACTTGTCCCATTGATGAACTT 58.457 36.000 0.00 0.00 0.00 2.66
3628 4457 4.371624 TGTCCCATTGATGAACTTCACT 57.628 40.909 0.00 0.00 0.00 3.41
3632 4461 5.922544 GTCCCATTGATGAACTTCACTTTTG 59.077 40.000 0.00 0.00 0.00 2.44
3656 4485 2.919772 TGGATGTGTAGGTGGAGAGA 57.080 50.000 0.00 0.00 0.00 3.10
3770 4599 4.097361 GAGACCGTCCCCAAGCCC 62.097 72.222 0.00 0.00 0.00 5.19
3853 4688 1.596934 GGATCAACTCCGAGGTGCA 59.403 57.895 8.72 0.00 31.59 4.57
3924 4759 0.456824 CGTCCTCATCAGGTGACACG 60.457 60.000 0.00 0.00 41.28 4.49
3926 4761 1.807165 CCTCATCAGGTGACACGCG 60.807 63.158 3.53 3.53 34.60 6.01
3942 4783 2.584970 CGCACACACACACCGAGT 60.585 61.111 0.00 0.00 0.00 4.18
3954 4803 0.108615 CACCGAGTGGCCTACTTGAG 60.109 60.000 18.84 13.09 42.51 3.02
3956 4805 1.115467 CCGAGTGGCCTACTTGAGAT 58.885 55.000 18.84 0.00 42.51 2.75
3957 4806 1.202463 CCGAGTGGCCTACTTGAGATG 60.202 57.143 18.84 4.16 42.51 2.90
3958 4807 1.751351 CGAGTGGCCTACTTGAGATGA 59.249 52.381 14.24 0.00 42.51 2.92
3964 4834 3.582647 TGGCCTACTTGAGATGAACTTGA 59.417 43.478 3.32 0.00 0.00 3.02
3977 4847 6.038985 AGATGAACTTGACACTGATCATACG 58.961 40.000 0.00 0.00 0.00 3.06
4078 4948 2.584391 GGCCAGGTCGGTCAAGTCT 61.584 63.158 0.00 0.00 40.18 3.24
4079 4949 1.255667 GGCCAGGTCGGTCAAGTCTA 61.256 60.000 0.00 0.00 40.18 2.59
4086 4956 2.094649 GGTCGGTCAAGTCTAGTCCAAG 60.095 54.545 0.00 0.00 0.00 3.61
4401 5271 0.622665 ACATTCCCAAGGAGGAGCTG 59.377 55.000 0.00 0.00 41.22 4.24
4992 5862 2.671963 GACCCCGTCAAGGCCAAC 60.672 66.667 5.01 0.00 39.21 3.77
5022 5892 0.323725 CCCCCATTTGGTCAGAGGTG 60.324 60.000 0.00 0.00 0.00 4.00
5059 5929 1.522355 CCGCACAAGCCGATGATCT 60.522 57.895 0.00 0.00 37.52 2.75
5092 5962 1.032114 GCCGGACCCCAAGAAGAATG 61.032 60.000 5.05 0.00 0.00 2.67
5103 5973 1.800805 AGAAGAATGTCACCACGCTG 58.199 50.000 0.00 0.00 0.00 5.18
5162 6032 1.065709 CGCCAACCTGGTAACCTACAT 60.066 52.381 0.00 0.00 40.46 2.29
5181 6051 9.435570 ACCTACATTCTATTATACTCCAGTTGT 57.564 33.333 0.00 0.00 0.00 3.32
5182 6052 9.698309 CCTACATTCTATTATACTCCAGTTGTG 57.302 37.037 0.00 0.00 0.00 3.33
5190 6068 2.680312 ACTCCAGTTGTGATGATCGG 57.320 50.000 0.00 0.00 0.00 4.18
5226 6104 3.490439 TCACTTGTTTGATCCTCTGCA 57.510 42.857 0.00 0.00 0.00 4.41
5434 6315 7.685884 GCCAAGACCAAGGTAGTACAAAATTTT 60.686 37.037 2.06 0.00 0.00 1.82
5435 6316 7.651704 CCAAGACCAAGGTAGTACAAAATTTTG 59.348 37.037 25.73 25.73 43.62 2.44
5436 6317 8.410141 CAAGACCAAGGTAGTACAAAATTTTGA 58.590 33.333 32.20 16.02 40.55 2.69
5447 6328 6.759356 AGTACAAAATTTTGAAAAAGTCCCCG 59.241 34.615 32.20 6.26 40.55 5.73
5448 6329 4.334203 ACAAAATTTTGAAAAAGTCCCCGC 59.666 37.500 32.20 0.00 40.55 6.13
5466 6347 0.853530 GCCATATTTCCCCCTCCACT 59.146 55.000 0.00 0.00 0.00 4.00
5474 6355 2.757124 CCCCCTCCACTATGCCCAC 61.757 68.421 0.00 0.00 0.00 4.61
5476 6357 1.355718 CCCCTCCACTATGCCCACAT 61.356 60.000 0.00 0.00 40.49 3.21
5489 6370 3.966979 TGCCCACATATCTGACATGTTT 58.033 40.909 0.00 0.00 34.39 2.83
5490 6371 4.343231 TGCCCACATATCTGACATGTTTT 58.657 39.130 0.00 0.00 34.39 2.43
5571 6452 5.263968 TCGAGGTAAGAACAAGATCCATC 57.736 43.478 0.00 0.00 0.00 3.51
5572 6453 4.045104 CGAGGTAAGAACAAGATCCATCG 58.955 47.826 0.00 0.00 0.00 3.84
5573 6454 4.372656 GAGGTAAGAACAAGATCCATCGG 58.627 47.826 0.00 0.00 0.00 4.18
5574 6455 3.134804 AGGTAAGAACAAGATCCATCGGG 59.865 47.826 0.00 0.00 0.00 5.14
5575 6456 3.118371 GGTAAGAACAAGATCCATCGGGT 60.118 47.826 0.00 0.00 34.93 5.28
5576 6457 3.721087 AAGAACAAGATCCATCGGGTT 57.279 42.857 0.00 0.32 34.93 4.11
5577 6458 4.837093 AAGAACAAGATCCATCGGGTTA 57.163 40.909 0.00 0.00 34.93 2.85
5578 6459 5.373812 AAGAACAAGATCCATCGGGTTAT 57.626 39.130 0.00 0.00 34.93 1.89
5579 6460 6.494666 AAGAACAAGATCCATCGGGTTATA 57.505 37.500 0.00 0.00 34.93 0.98
5583 6464 7.661847 AGAACAAGATCCATCGGGTTATATTTC 59.338 37.037 0.00 0.00 34.93 2.17
5584 6465 7.079451 ACAAGATCCATCGGGTTATATTTCT 57.921 36.000 0.00 0.00 34.93 2.52
5585 6466 6.936900 ACAAGATCCATCGGGTTATATTTCTG 59.063 38.462 0.00 0.00 34.93 3.02
5586 6467 6.688073 AGATCCATCGGGTTATATTTCTGT 57.312 37.500 0.00 0.00 34.93 3.41
5587 6468 6.467677 AGATCCATCGGGTTATATTTCTGTG 58.532 40.000 0.00 0.00 34.93 3.66
5588 6469 5.880164 TCCATCGGGTTATATTTCTGTGA 57.120 39.130 0.00 0.00 34.93 3.58
5589 6470 5.853936 TCCATCGGGTTATATTTCTGTGAG 58.146 41.667 0.00 0.00 34.93 3.51
5590 6471 5.600898 TCCATCGGGTTATATTTCTGTGAGA 59.399 40.000 0.00 0.00 34.93 3.27
5591 6472 6.270000 TCCATCGGGTTATATTTCTGTGAGAT 59.730 38.462 0.00 0.00 34.93 2.75
5592 6473 6.369890 CCATCGGGTTATATTTCTGTGAGATG 59.630 42.308 0.00 0.00 0.00 2.90
5593 6474 5.853936 TCGGGTTATATTTCTGTGAGATGG 58.146 41.667 0.00 0.00 0.00 3.51
5594 6475 5.600898 TCGGGTTATATTTCTGTGAGATGGA 59.399 40.000 0.00 0.00 0.00 3.41
5595 6476 6.270000 TCGGGTTATATTTCTGTGAGATGGAT 59.730 38.462 0.00 0.00 0.00 3.41
5596 6477 6.369890 CGGGTTATATTTCTGTGAGATGGATG 59.630 42.308 0.00 0.00 0.00 3.51
5597 6478 6.150140 GGGTTATATTTCTGTGAGATGGATGC 59.850 42.308 0.00 0.00 0.00 3.91
5598 6479 6.128445 GGTTATATTTCTGTGAGATGGATGCG 60.128 42.308 0.00 0.00 0.00 4.73
5602 6483 1.758862 TCTGTGAGATGGATGCGACAT 59.241 47.619 0.00 0.00 0.00 3.06
5605 6486 1.863454 GTGAGATGGATGCGACATGAC 59.137 52.381 0.00 0.00 0.00 3.06
5611 6492 1.065564 TGGATGCGACATGACCATTCA 60.066 47.619 0.00 1.72 35.73 2.57
5616 6497 2.819019 TGCGACATGACCATTCACAAAT 59.181 40.909 0.00 0.00 33.38 2.32
5618 6499 3.853671 GCGACATGACCATTCACAAATTC 59.146 43.478 0.00 0.00 33.38 2.17
5619 6500 4.090729 CGACATGACCATTCACAAATTCG 58.909 43.478 0.00 0.00 33.38 3.34
5623 6504 3.637432 TGACCATTCACAAATTCGTTGC 58.363 40.909 0.00 0.00 41.31 4.17
5624 6505 2.986479 GACCATTCACAAATTCGTTGCC 59.014 45.455 0.00 0.00 41.31 4.52
5625 6506 1.984990 CCATTCACAAATTCGTTGCCG 59.015 47.619 0.00 0.00 41.31 5.69
5635 6516 3.951979 ATTCGTTGCCGATGAGAATTC 57.048 42.857 0.00 0.00 43.80 2.17
5644 6525 3.431486 GCCGATGAGAATTCTCTGGTCTT 60.431 47.826 30.45 12.35 43.25 3.01
5645 6526 4.118410 CCGATGAGAATTCTCTGGTCTTG 58.882 47.826 30.45 16.89 43.25 3.02
5646 6527 3.555139 CGATGAGAATTCTCTGGTCTTGC 59.445 47.826 30.45 13.02 43.25 4.01
5647 6528 4.680172 CGATGAGAATTCTCTGGTCTTGCT 60.680 45.833 30.45 8.70 43.25 3.91
5648 6529 3.935315 TGAGAATTCTCTGGTCTTGCTG 58.065 45.455 30.45 0.00 43.25 4.41
5649 6530 2.677337 GAGAATTCTCTGGTCTTGCTGC 59.323 50.000 25.26 0.00 39.81 5.25
5650 6531 2.305343 AGAATTCTCTGGTCTTGCTGCT 59.695 45.455 0.88 0.00 0.00 4.24
5651 6532 2.875094 ATTCTCTGGTCTTGCTGCTT 57.125 45.000 0.00 0.00 0.00 3.91
5652 6533 2.645838 TTCTCTGGTCTTGCTGCTTT 57.354 45.000 0.00 0.00 0.00 3.51
5653 6534 1.888215 TCTCTGGTCTTGCTGCTTTG 58.112 50.000 0.00 0.00 0.00 2.77
5654 6535 1.417517 TCTCTGGTCTTGCTGCTTTGA 59.582 47.619 0.00 0.00 0.00 2.69
5655 6536 2.039480 TCTCTGGTCTTGCTGCTTTGAT 59.961 45.455 0.00 0.00 0.00 2.57
6212 7093 4.421479 AAGCCCGACGTCGAGCAG 62.421 66.667 39.15 24.68 45.77 4.24
6215 7096 4.838486 CCCGACGTCGAGCAGCTC 62.838 72.222 37.65 12.94 43.02 4.09
6581 7462 4.353437 ACCGACGCGTCCAAGGTC 62.353 66.667 31.84 7.76 0.00 3.85
6609 7490 3.075005 TGCCAGAGTAGACCGGCC 61.075 66.667 0.00 0.00 44.22 6.13
6610 7491 4.208686 GCCAGAGTAGACCGGCCG 62.209 72.222 21.04 21.04 38.67 6.13
6874 7763 6.073548 ACAGTTTCGTCTCTGATCAATCAAAC 60.074 38.462 0.00 1.24 36.18 2.93
6875 7764 5.409826 AGTTTCGTCTCTGATCAATCAAACC 59.590 40.000 0.00 0.00 36.18 3.27
6876 7765 4.535526 TCGTCTCTGATCAATCAAACCA 57.464 40.909 0.00 0.00 36.18 3.67
6877 7766 4.893608 TCGTCTCTGATCAATCAAACCAA 58.106 39.130 0.00 0.00 36.18 3.67
6878 7767 5.491070 TCGTCTCTGATCAATCAAACCAAT 58.509 37.500 0.00 0.00 36.18 3.16
6879 7768 5.939883 TCGTCTCTGATCAATCAAACCAATT 59.060 36.000 0.00 0.00 36.18 2.32
6880 7769 6.430925 TCGTCTCTGATCAATCAAACCAATTT 59.569 34.615 0.00 0.00 36.18 1.82
6881 7770 6.744537 CGTCTCTGATCAATCAAACCAATTTC 59.255 38.462 0.00 0.00 36.18 2.17
6882 7771 7.361542 CGTCTCTGATCAATCAAACCAATTTCT 60.362 37.037 0.00 0.00 36.18 2.52
6883 7772 7.754027 GTCTCTGATCAATCAAACCAATTTCTG 59.246 37.037 0.00 0.00 36.18 3.02
6884 7773 6.927416 TCTGATCAATCAAACCAATTTCTGG 58.073 36.000 0.00 0.00 43.08 3.86
6885 7774 6.720748 TCTGATCAATCAAACCAATTTCTGGA 59.279 34.615 0.00 0.00 41.28 3.86
6928 7817 0.597637 CGATACAGTGGGGCATCGAC 60.598 60.000 11.11 0.00 42.11 4.20
7030 7919 4.227134 CTGCCGGGGATGGTCTCG 62.227 72.222 2.18 0.00 0.00 4.04
7151 8040 0.882474 CGTCTCCGACCTTCTCAAGT 59.118 55.000 0.00 0.00 35.63 3.16
7196 8125 1.580704 CGGTCGTACGCACTGTAATTC 59.419 52.381 11.24 0.00 34.07 2.17
7232 8170 9.162764 GATGACTGCAGAAAAGGTAGTATAAAA 57.837 33.333 23.35 0.00 31.11 1.52
7233 8171 9.686683 ATGACTGCAGAAAAGGTAGTATAAAAT 57.313 29.630 23.35 0.00 31.11 1.82
7302 8240 0.543749 GTCTTAGCATGCCTCCCTGT 59.456 55.000 15.66 0.00 0.00 4.00
7303 8241 0.833287 TCTTAGCATGCCTCCCTGTC 59.167 55.000 15.66 0.00 0.00 3.51
7304 8242 0.179034 CTTAGCATGCCTCCCTGTCC 60.179 60.000 15.66 0.00 0.00 4.02
7305 8243 1.635817 TTAGCATGCCTCCCTGTCCC 61.636 60.000 15.66 0.00 0.00 4.46
7306 8244 2.551856 TAGCATGCCTCCCTGTCCCT 62.552 60.000 15.66 0.00 0.00 4.20
7307 8245 2.593978 CATGCCTCCCTGTCCCTG 59.406 66.667 0.00 0.00 0.00 4.45
7376 8314 6.045072 AGAAATTGCATGTGGAAATGATGT 57.955 33.333 0.00 0.00 0.00 3.06
7379 8317 8.095792 AGAAATTGCATGTGGAAATGATGTTTA 58.904 29.630 0.00 0.00 0.00 2.01
7419 8357 5.421056 ACTTGGATATGAACCGAGACAAGTA 59.579 40.000 0.00 0.00 43.61 2.24
7423 8361 6.127168 TGGATATGAACCGAGACAAGTATGTT 60.127 38.462 0.00 0.00 40.74 2.71
7457 8395 7.874940 TGGATATTGCATTCGAGGATAAAAAG 58.125 34.615 0.00 0.00 0.00 2.27
7458 8396 7.719193 TGGATATTGCATTCGAGGATAAAAAGA 59.281 33.333 0.00 0.00 0.00 2.52
7465 8403 8.150296 TGCATTCGAGGATAAAAAGATATCTCA 58.850 33.333 5.51 0.00 33.63 3.27
7523 8782 1.754745 GGCGATAGGATGAAGCCCA 59.245 57.895 0.00 0.00 41.81 5.36
7537 8796 2.033602 CCCACAACCGAACCTCCC 59.966 66.667 0.00 0.00 0.00 4.30
7551 8810 0.107654 CCTCCCGAGCCGAATTTTCT 60.108 55.000 0.00 0.00 0.00 2.52
7552 8811 1.291132 CTCCCGAGCCGAATTTTCTC 58.709 55.000 0.00 0.00 0.00 2.87
7553 8812 0.107848 TCCCGAGCCGAATTTTCTCC 60.108 55.000 0.00 0.00 0.00 3.71
7556 8815 0.924090 CGAGCCGAATTTTCTCCGAG 59.076 55.000 0.00 0.00 0.00 4.63
7563 8822 2.677836 CGAATTTTCTCCGAGCATCCAA 59.322 45.455 0.00 0.00 0.00 3.53
7580 8839 1.703411 CAAGGCCTCCTTTGGTTTGA 58.297 50.000 5.23 0.00 41.69 2.69
7582 8841 2.001076 AGGCCTCCTTTGGTTTGAAG 57.999 50.000 0.00 0.00 0.00 3.02
7592 8851 5.669477 CCTTTGGTTTGAAGGAATTTCACA 58.331 37.500 0.00 0.00 45.22 3.58
7701 8961 7.881775 AGTTCTTTAAAGTCATCTGGTTTGT 57.118 32.000 14.74 0.00 0.00 2.83
7719 8979 6.321181 TGGTTTGTAGGCATGGATTTCTATTC 59.679 38.462 0.00 0.00 0.00 1.75
7720 8980 6.239036 GGTTTGTAGGCATGGATTTCTATTCC 60.239 42.308 0.00 0.00 0.00 3.01
7722 8982 7.387265 TTGTAGGCATGGATTTCTATTCCTA 57.613 36.000 0.00 0.00 33.17 2.94
7723 8983 6.769512 TGTAGGCATGGATTTCTATTCCTAC 58.230 40.000 18.97 18.97 46.15 3.18
7724 8984 4.899502 AGGCATGGATTTCTATTCCTACG 58.100 43.478 0.00 0.00 29.62 3.51
7725 8985 4.348168 AGGCATGGATTTCTATTCCTACGT 59.652 41.667 0.00 0.00 29.62 3.57
7726 8986 5.542635 AGGCATGGATTTCTATTCCTACGTA 59.457 40.000 0.00 0.00 29.62 3.57
7727 8987 5.869888 GGCATGGATTTCTATTCCTACGTAG 59.130 44.000 15.92 15.92 34.17 3.51
7728 8988 6.295123 GGCATGGATTTCTATTCCTACGTAGA 60.295 42.308 24.15 5.23 34.17 2.59
7729 8989 7.152645 GCATGGATTTCTATTCCTACGTAGAA 58.847 38.462 24.15 15.44 35.69 2.10
7730 8990 7.329717 GCATGGATTTCTATTCCTACGTAGAAG 59.670 40.741 24.15 14.30 37.98 2.85
7828 9092 7.210174 TCAAATGACATCTCTTTCCCTATACG 58.790 38.462 0.00 0.00 0.00 3.06
7839 9103 6.223852 TCTTTCCCTATACGAATTCAGATGC 58.776 40.000 6.22 0.00 0.00 3.91
7840 9104 5.545063 TTCCCTATACGAATTCAGATGCA 57.455 39.130 6.22 0.00 0.00 3.96
7843 9107 5.012046 TCCCTATACGAATTCAGATGCATGT 59.988 40.000 2.46 0.00 0.00 3.21
7899 9164 9.973880 ATGATATTTCTATATCCTATGGGACCA 57.026 33.333 0.00 0.00 45.43 4.02
7910 9175 1.442886 ATGGGACCAAAGGAGGCCAA 61.443 55.000 5.01 0.00 0.00 4.52
7916 9181 0.681175 CCAAAGGAGGCCAAAGGTTG 59.319 55.000 5.01 2.18 0.00 3.77
7933 9198 7.121168 CCAAAGGTTGGTATATATGGCTGTATG 59.879 40.741 0.00 0.00 45.93 2.39
7939 9204 9.367444 GTTGGTATATATGGCTGTATGTAAGAC 57.633 37.037 0.00 0.00 0.00 3.01
7963 9228 8.056407 ACTTGGAGGATAAAAAGTTATCTTGC 57.944 34.615 6.46 5.20 43.56 4.01
8000 9265 1.024271 AACATACATGATGCGGTGGC 58.976 50.000 0.00 0.00 39.39 5.01
8053 9318 3.299340 TTGAGTTCTTAGCGTGTCCTC 57.701 47.619 0.00 0.00 0.00 3.71
8054 9319 1.544691 TGAGTTCTTAGCGTGTCCTCC 59.455 52.381 0.00 0.00 0.00 4.30
8055 9320 0.896226 AGTTCTTAGCGTGTCCTCCC 59.104 55.000 0.00 0.00 0.00 4.30
8056 9321 0.108281 GTTCTTAGCGTGTCCTCCCC 60.108 60.000 0.00 0.00 0.00 4.81
8086 9351 1.575922 CGATGCAGTGGTGGTGTTG 59.424 57.895 0.00 0.00 0.00 3.33
8090 9355 2.542907 GCAGTGGTGGTGTTGACCG 61.543 63.158 0.00 0.00 46.62 4.79
8093 9358 2.107343 TGGTGGTGTTGACCGTCG 59.893 61.111 0.00 0.00 46.62 5.12
8113 9378 4.083862 GCGGCCTTCGAGGTCCTT 62.084 66.667 0.00 0.00 36.37 3.36
8134 9399 0.111061 ACTCCACCATCAGCTGCAAA 59.889 50.000 9.47 0.00 0.00 3.68
8152 9417 4.229876 GCAAACAGAAGTTTAGATGGCAC 58.770 43.478 0.00 0.00 45.80 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.351350 GTCTACTGGCTCCCCAAACTT 59.649 52.381 0.00 0.00 41.58 2.66
25 26 2.128507 CGGAGTCTACTGGCTCCCC 61.129 68.421 10.60 0.00 46.35 4.81
36 37 3.661745 GTGACAACACACGGAGTCT 57.338 52.632 0.00 0.00 41.61 3.24
130 131 2.410322 ATCCAAGGCGCTGTCAACCA 62.410 55.000 7.64 0.00 0.00 3.67
159 160 0.401738 AGGGACTGTTGTGTGATGGG 59.598 55.000 0.00 0.00 37.18 4.00
176 177 3.093057 CGGTAGATAGATTCCCAGGAGG 58.907 54.545 0.00 0.00 0.00 4.30
196 203 2.125713 TACTGTGATGGCGCCACG 60.126 61.111 35.50 19.59 37.34 4.94
207 214 3.165058 AGCGATGTGGTATGTACTGTG 57.835 47.619 0.00 0.00 0.00 3.66
216 223 2.852449 TGGTTTGAAAGCGATGTGGTA 58.148 42.857 2.47 0.00 0.00 3.25
269 276 8.456471 GGAGGGCGATTAATTAATTATTACACC 58.544 37.037 11.92 8.99 0.00 4.16
284 292 1.813859 CGTGTCAGGAGGGCGATTA 59.186 57.895 0.00 0.00 0.00 1.75
285 293 2.579201 CGTGTCAGGAGGGCGATT 59.421 61.111 0.00 0.00 0.00 3.34
286 294 4.148825 GCGTGTCAGGAGGGCGAT 62.149 66.667 0.00 0.00 0.00 4.58
316 324 3.551496 TTGGTGGGAGAAGCTGCCG 62.551 63.158 0.00 0.00 45.25 5.69
354 366 3.314553 ACAGTGGTACGATCTTTTCACG 58.685 45.455 0.00 0.00 0.00 4.35
370 382 4.704833 CCGGCCACCTGGACAGTG 62.705 72.222 2.24 0.00 46.09 3.66
435 447 1.001597 CGGTATCGTTCCTCCTAGTGC 60.002 57.143 0.00 0.00 0.00 4.40
436 448 1.607628 CCGGTATCGTTCCTCCTAGTG 59.392 57.143 0.00 0.00 33.95 2.74
571 585 6.927936 GCTGGCTAGGTATGATATGTGATATG 59.072 42.308 0.00 0.00 0.00 1.78
572 586 6.042552 GGCTGGCTAGGTATGATATGTGATAT 59.957 42.308 0.00 0.00 0.00 1.63
573 587 5.363868 GGCTGGCTAGGTATGATATGTGATA 59.636 44.000 0.00 0.00 0.00 2.15
574 588 4.163078 GGCTGGCTAGGTATGATATGTGAT 59.837 45.833 0.00 0.00 0.00 3.06
575 589 3.515502 GGCTGGCTAGGTATGATATGTGA 59.484 47.826 0.00 0.00 0.00 3.58
576 590 3.261643 TGGCTGGCTAGGTATGATATGTG 59.738 47.826 0.00 0.00 0.00 3.21
577 591 3.261897 GTGGCTGGCTAGGTATGATATGT 59.738 47.826 0.00 0.00 0.00 2.29
656 670 0.387367 CGATCTATCTCGTTGGGGCG 60.387 60.000 0.00 0.00 34.00 6.13
657 671 0.959553 TCGATCTATCTCGTTGGGGC 59.040 55.000 0.00 0.00 39.62 5.80
658 672 1.069159 CGTCGATCTATCTCGTTGGGG 60.069 57.143 0.00 0.00 39.62 4.96
659 673 1.663445 GCGTCGATCTATCTCGTTGGG 60.663 57.143 0.00 0.00 39.62 4.12
697 711 2.947127 TTGTGTGATGATGGGTGTGA 57.053 45.000 0.00 0.00 0.00 3.58
710 761 7.441878 TTTTGCTTTGTTTTGTTTTTGTGTG 57.558 28.000 0.00 0.00 0.00 3.82
711 762 9.175060 GTATTTTGCTTTGTTTTGTTTTTGTGT 57.825 25.926 0.00 0.00 0.00 3.72
759 810 7.989416 TCTTGAACTGTATTCGGGTATTTTT 57.011 32.000 0.00 0.00 0.00 1.94
760 811 7.989416 TTCTTGAACTGTATTCGGGTATTTT 57.011 32.000 0.00 0.00 0.00 1.82
761 812 7.989416 TTTCTTGAACTGTATTCGGGTATTT 57.011 32.000 0.00 0.00 0.00 1.40
762 813 7.361799 GCTTTTCTTGAACTGTATTCGGGTATT 60.362 37.037 0.00 0.00 0.00 1.89
763 814 6.093633 GCTTTTCTTGAACTGTATTCGGGTAT 59.906 38.462 0.00 0.00 0.00 2.73
764 815 5.410439 GCTTTTCTTGAACTGTATTCGGGTA 59.590 40.000 0.00 0.00 0.00 3.69
765 816 4.215613 GCTTTTCTTGAACTGTATTCGGGT 59.784 41.667 0.00 0.00 0.00 5.28
766 817 4.215399 TGCTTTTCTTGAACTGTATTCGGG 59.785 41.667 0.00 0.00 0.00 5.14
767 818 5.147162 GTGCTTTTCTTGAACTGTATTCGG 58.853 41.667 0.00 0.00 0.00 4.30
768 819 5.147162 GGTGCTTTTCTTGAACTGTATTCG 58.853 41.667 0.00 0.00 0.00 3.34
769 820 5.049680 TCGGTGCTTTTCTTGAACTGTATTC 60.050 40.000 0.00 0.00 0.00 1.75
770 821 4.819630 TCGGTGCTTTTCTTGAACTGTATT 59.180 37.500 0.00 0.00 0.00 1.89
771 822 4.385825 TCGGTGCTTTTCTTGAACTGTAT 58.614 39.130 0.00 0.00 0.00 2.29
772 823 3.799366 TCGGTGCTTTTCTTGAACTGTA 58.201 40.909 0.00 0.00 0.00 2.74
773 824 2.639065 TCGGTGCTTTTCTTGAACTGT 58.361 42.857 0.00 0.00 0.00 3.55
774 825 3.691049 TTCGGTGCTTTTCTTGAACTG 57.309 42.857 0.00 0.00 0.00 3.16
808 859 3.005472 TGCTACTATATCCTCCAACGCAC 59.995 47.826 0.00 0.00 0.00 5.34
810 861 3.576648 GTGCTACTATATCCTCCAACGC 58.423 50.000 0.00 0.00 0.00 4.84
840 891 3.203934 CAGGGGGAAAGATGGAAAGAGAT 59.796 47.826 0.00 0.00 0.00 2.75
843 894 1.005924 GCAGGGGGAAAGATGGAAAGA 59.994 52.381 0.00 0.00 0.00 2.52
846 897 0.039618 GTGCAGGGGGAAAGATGGAA 59.960 55.000 0.00 0.00 0.00 3.53
859 910 2.047844 CTCGAGGTGTGGTGCAGG 60.048 66.667 3.91 0.00 0.00 4.85
906 957 1.335233 CGGCTTATATACGTGTGCGGA 60.335 52.381 0.00 0.00 43.45 5.54
907 958 1.057636 CGGCTTATATACGTGTGCGG 58.942 55.000 0.00 0.00 43.45 5.69
941 992 0.811281 GCCCCTTCACTGAAAATCCG 59.189 55.000 0.00 0.00 0.00 4.18
976 1027 3.291383 CGGCCTCCCTCGAGCTAG 61.291 72.222 6.99 6.09 34.49 3.42
995 1046 4.770362 TCCCCACCGCCATCTCGA 62.770 66.667 0.00 0.00 0.00 4.04
1218 1269 4.261801 CCATGGTCGGTTGATCTTTACTT 58.738 43.478 2.57 0.00 0.00 2.24
1225 1276 2.180204 CGGCCATGGTCGGTTGATC 61.180 63.158 31.05 0.79 39.82 2.92
1245 1296 2.835431 GCTAGGCTGAGAGGGCGA 60.835 66.667 0.00 0.00 36.85 5.54
1247 1298 1.123928 TTAAGCTAGGCTGAGAGGGC 58.876 55.000 0.00 0.00 39.62 5.19
1248 1299 2.968574 TGATTAAGCTAGGCTGAGAGGG 59.031 50.000 0.00 0.00 39.62 4.30
1249 1300 4.376146 GTTGATTAAGCTAGGCTGAGAGG 58.624 47.826 0.00 0.00 39.62 3.69
1251 1302 3.181475 CGGTTGATTAAGCTAGGCTGAGA 60.181 47.826 0.00 0.00 39.62 3.27
1252 1303 3.126831 CGGTTGATTAAGCTAGGCTGAG 58.873 50.000 0.00 0.00 39.62 3.35
1253 1304 2.764010 TCGGTTGATTAAGCTAGGCTGA 59.236 45.455 0.00 0.00 39.62 4.26
1259 1310 3.120792 GCACGATCGGTTGATTAAGCTA 58.879 45.455 20.98 0.00 34.09 3.32
1327 1378 0.681887 CACCTGCAATCATCAGCCCA 60.682 55.000 0.00 0.00 0.00 5.36
1439 1491 3.793144 GCCGGAAACAGAGCAGCG 61.793 66.667 5.05 0.00 0.00 5.18
1440 1492 3.435186 GGCCGGAAACAGAGCAGC 61.435 66.667 5.05 0.00 0.00 5.25
1646 1698 1.084289 AACTCGCGGACAATTAAGGC 58.916 50.000 6.13 0.00 0.00 4.35
1669 1722 1.548719 GACCCAGCCCAACAAATTACC 59.451 52.381 0.00 0.00 0.00 2.85
1678 1731 0.758685 CCAAAAGTGACCCAGCCCAA 60.759 55.000 0.00 0.00 0.00 4.12
1746 1800 1.059006 GCTCACTCCCTCCCATGGAT 61.059 60.000 15.22 0.00 0.00 3.41
1747 1801 1.690633 GCTCACTCCCTCCCATGGA 60.691 63.158 15.22 0.00 0.00 3.41
1748 1802 1.997311 TGCTCACTCCCTCCCATGG 60.997 63.158 4.14 4.14 0.00 3.66
1758 1812 1.155042 CCAGAAAGCAGTGCTCACTC 58.845 55.000 20.03 15.05 40.20 3.51
1789 1843 6.416161 GTGAAGTTTGCTCTCATTTCTCAAAC 59.584 38.462 7.76 7.76 43.84 2.93
1792 1846 4.212004 CGTGAAGTTTGCTCTCATTTCTCA 59.788 41.667 0.00 0.00 0.00 3.27
1805 1871 3.123804 AGTGTGAGCTACGTGAAGTTTG 58.876 45.455 0.00 0.00 0.00 2.93
1809 1875 3.123804 ACAAAGTGTGAGCTACGTGAAG 58.876 45.455 0.00 0.00 0.00 3.02
1815 1881 3.691049 TTGCAACAAAGTGTGAGCTAC 57.309 42.857 0.00 0.00 34.56 3.58
1818 1884 3.481789 CGTTTTTGCAACAAAGTGTGAGC 60.482 43.478 0.00 0.00 34.20 4.26
1822 1888 1.729517 GCCGTTTTTGCAACAAAGTGT 59.270 42.857 0.00 0.00 0.00 3.55
1853 1919 0.713883 CAGACAATACGTGTGGTCGC 59.286 55.000 13.46 0.00 41.96 5.19
1987 2053 7.383300 ACGTGTTATAAGTGTACCTGTTTTCTC 59.617 37.037 0.00 0.00 0.00 2.87
2006 2072 4.696402 ACCTGTTTTCTCAACAACGTGTTA 59.304 37.500 0.00 0.00 38.77 2.41
2007 2073 3.504520 ACCTGTTTTCTCAACAACGTGTT 59.495 39.130 0.00 0.00 42.08 3.32
2008 2074 3.078837 ACCTGTTTTCTCAACAACGTGT 58.921 40.909 0.00 0.00 0.00 4.49
2009 2075 3.757745 ACCTGTTTTCTCAACAACGTG 57.242 42.857 0.00 0.00 0.00 4.49
2010 2076 4.093850 GTGTACCTGTTTTCTCAACAACGT 59.906 41.667 0.00 0.00 0.00 3.99
2011 2077 4.331717 AGTGTACCTGTTTTCTCAACAACG 59.668 41.667 0.00 0.00 0.00 4.10
2012 2078 5.813080 AGTGTACCTGTTTTCTCAACAAC 57.187 39.130 0.00 0.00 0.00 3.32
2013 2079 7.925043 TTAAGTGTACCTGTTTTCTCAACAA 57.075 32.000 0.00 0.00 0.00 2.83
2014 2080 7.066525 CCTTTAAGTGTACCTGTTTTCTCAACA 59.933 37.037 0.00 0.00 0.00 3.33
2015 2081 7.415229 CCTTTAAGTGTACCTGTTTTCTCAAC 58.585 38.462 0.00 0.00 0.00 3.18
2016 2082 6.544564 CCCTTTAAGTGTACCTGTTTTCTCAA 59.455 38.462 0.00 0.00 0.00 3.02
2017 2083 6.059484 CCCTTTAAGTGTACCTGTTTTCTCA 58.941 40.000 0.00 0.00 0.00 3.27
2018 2084 6.060136 ACCCTTTAAGTGTACCTGTTTTCTC 58.940 40.000 0.00 0.00 0.00 2.87
2019 2085 6.009908 ACCCTTTAAGTGTACCTGTTTTCT 57.990 37.500 0.00 0.00 0.00 2.52
2020 2086 6.095860 ACAACCCTTTAAGTGTACCTGTTTTC 59.904 38.462 0.00 0.00 0.00 2.29
2021 2087 5.953548 ACAACCCTTTAAGTGTACCTGTTTT 59.046 36.000 0.00 0.00 0.00 2.43
2022 2088 5.512298 ACAACCCTTTAAGTGTACCTGTTT 58.488 37.500 0.00 0.00 0.00 2.83
2023 2089 5.120054 ACAACCCTTTAAGTGTACCTGTT 57.880 39.130 0.00 0.00 0.00 3.16
2024 2090 4.783560 ACAACCCTTTAAGTGTACCTGT 57.216 40.909 0.00 0.00 0.00 4.00
2025 2091 5.221165 CCAAACAACCCTTTAAGTGTACCTG 60.221 44.000 0.00 0.00 0.00 4.00
2026 2092 4.891168 CCAAACAACCCTTTAAGTGTACCT 59.109 41.667 0.00 0.00 0.00 3.08
2027 2093 4.888823 TCCAAACAACCCTTTAAGTGTACC 59.111 41.667 0.00 0.00 0.00 3.34
2028 2094 6.644248 ATCCAAACAACCCTTTAAGTGTAC 57.356 37.500 0.00 0.00 0.00 2.90
2029 2095 6.427547 CGTATCCAAACAACCCTTTAAGTGTA 59.572 38.462 0.00 0.00 0.00 2.90
2030 2096 5.239963 CGTATCCAAACAACCCTTTAAGTGT 59.760 40.000 0.00 0.00 0.00 3.55
2031 2097 5.335348 CCGTATCCAAACAACCCTTTAAGTG 60.335 44.000 0.00 0.00 0.00 3.16
2032 2098 4.763279 CCGTATCCAAACAACCCTTTAAGT 59.237 41.667 0.00 0.00 0.00 2.24
2033 2099 4.763279 ACCGTATCCAAACAACCCTTTAAG 59.237 41.667 0.00 0.00 0.00 1.85
2034 2100 4.519730 CACCGTATCCAAACAACCCTTTAA 59.480 41.667 0.00 0.00 0.00 1.52
2035 2101 4.073549 CACCGTATCCAAACAACCCTTTA 58.926 43.478 0.00 0.00 0.00 1.85
2036 2102 2.888414 CACCGTATCCAAACAACCCTTT 59.112 45.455 0.00 0.00 0.00 3.11
2037 2103 2.106857 TCACCGTATCCAAACAACCCTT 59.893 45.455 0.00 0.00 0.00 3.95
2038 2104 1.700739 TCACCGTATCCAAACAACCCT 59.299 47.619 0.00 0.00 0.00 4.34
2108 2174 8.789881 TTTGTTACGTTATCCAAACAGAATTG 57.210 30.769 0.00 0.00 33.70 2.32
2121 2187 6.480981 CCTTATCCACGGATTTGTTACGTTAT 59.519 38.462 3.41 0.00 44.50 1.89
2421 2570 0.249322 CAGAGGTCAACAACGACGGT 60.249 55.000 0.00 0.00 36.73 4.83
2478 2633 2.125912 GACTGTGATGCGACGGCT 60.126 61.111 0.00 0.00 40.82 5.52
2651 2807 3.243501 GGCTGCACAACTCAAGATCAAAA 60.244 43.478 0.50 0.00 0.00 2.44
2672 2828 2.515523 CAGGGAATCTGCTGCGGG 60.516 66.667 8.89 0.00 36.60 6.13
2687 2843 9.880064 CATTGAAGATCAAGAATTAGCATACAG 57.120 33.333 0.00 0.00 40.05 2.74
2704 2860 6.839124 TGCAAATGACTAACCATTGAAGAT 57.161 33.333 0.00 0.00 36.90 2.40
2717 2873 3.251729 GTGTGACAGACATGCAAATGACT 59.748 43.478 0.00 0.00 36.78 3.41
2769 2927 0.317436 GTCGCCTCTATGCTCACGAG 60.317 60.000 0.00 0.00 0.00 4.18
2780 2938 2.685387 GAATGATCGCCGTCGCCTCT 62.685 60.000 0.00 0.00 35.26 3.69
2793 2951 2.696989 TCGTGTCCAGCATGAATGAT 57.303 45.000 0.00 0.00 39.93 2.45
2794 2952 2.093553 TGATCGTGTCCAGCATGAATGA 60.094 45.455 0.00 0.00 45.24 2.57
2798 2962 1.758862 AGATGATCGTGTCCAGCATGA 59.241 47.619 0.00 0.00 46.05 3.07
3025 3361 2.907458 ATGGAGTTAGGCCTTTGCTT 57.093 45.000 12.58 0.00 37.74 3.91
3028 3364 9.349713 TGTTTAATATATGGAGTTAGGCCTTTG 57.650 33.333 12.58 0.00 0.00 2.77
3039 3375 9.784531 AGACTTGTGGATGTTTAATATATGGAG 57.215 33.333 0.00 0.00 0.00 3.86
3077 3413 7.388224 GGGTGTGGTTTTCTTTTTCTGTAAAAA 59.612 33.333 0.00 0.00 41.21 1.94
3079 3415 6.014499 TGGGTGTGGTTTTCTTTTTCTGTAAA 60.014 34.615 0.00 0.00 0.00 2.01
3096 3435 3.486383 AGTAAGTGTGAATTGGGTGTGG 58.514 45.455 0.00 0.00 0.00 4.17
3097 3436 5.067153 TCAAAGTAAGTGTGAATTGGGTGTG 59.933 40.000 0.00 0.00 0.00 3.82
3101 3440 6.207417 AGACATCAAAGTAAGTGTGAATTGGG 59.793 38.462 0.00 0.00 0.00 4.12
3107 3446 5.447624 TCGAGACATCAAAGTAAGTGTGA 57.552 39.130 0.00 0.00 0.00 3.58
3111 3450 9.530633 GGTATAAATCGAGACATCAAAGTAAGT 57.469 33.333 0.00 0.00 0.00 2.24
3112 3451 9.529325 TGGTATAAATCGAGACATCAAAGTAAG 57.471 33.333 0.00 0.00 0.00 2.34
3133 3472 2.170607 AGCTGGTACAAATCGCTGGTAT 59.829 45.455 0.00 0.00 38.70 2.73
3145 3484 4.259933 TCCTATCCTTGTAGCTGGTACA 57.740 45.455 15.14 15.14 40.06 2.90
3146 3485 5.128991 AGTTTCCTATCCTTGTAGCTGGTAC 59.871 44.000 9.96 9.96 0.00 3.34
3150 3489 6.472686 ACTAGTTTCCTATCCTTGTAGCTG 57.527 41.667 0.00 0.00 0.00 4.24
3151 3490 6.630638 GCAACTAGTTTCCTATCCTTGTAGCT 60.631 42.308 5.07 0.00 0.00 3.32
3152 3491 5.524281 GCAACTAGTTTCCTATCCTTGTAGC 59.476 44.000 5.07 0.00 0.00 3.58
3153 3492 6.535508 GTGCAACTAGTTTCCTATCCTTGTAG 59.464 42.308 5.07 0.00 0.00 2.74
3154 3493 6.014070 TGTGCAACTAGTTTCCTATCCTTGTA 60.014 38.462 5.07 0.00 38.04 2.41
3155 3494 5.221843 TGTGCAACTAGTTTCCTATCCTTGT 60.222 40.000 5.07 0.00 38.04 3.16
3156 3495 5.245531 TGTGCAACTAGTTTCCTATCCTTG 58.754 41.667 5.07 0.00 38.04 3.61
3162 3501 4.759693 CCAACATGTGCAACTAGTTTCCTA 59.240 41.667 5.07 0.00 38.04 2.94
3179 3518 3.068307 GCAGATACTCTACGTCCCAACAT 59.932 47.826 0.00 0.00 0.00 2.71
3189 3528 2.587612 CTCGCGAGCAGATACTCTAC 57.412 55.000 25.07 0.00 34.35 2.59
3205 3544 3.068732 TCATCCAGGACTATTTGAGCTCG 59.931 47.826 9.64 0.00 0.00 5.03
3237 3576 9.822185 AAGCTTTCTACACAAATTCTGAATTTT 57.178 25.926 22.21 12.90 38.97 1.82
3238 3577 9.822185 AAAGCTTTCTACACAAATTCTGAATTT 57.178 25.926 19.79 19.79 41.57 1.82
3240 3579 8.632679 TCAAAGCTTTCTACACAAATTCTGAAT 58.367 29.630 9.23 0.00 0.00 2.57
3241 3580 7.995289 TCAAAGCTTTCTACACAAATTCTGAA 58.005 30.769 9.23 0.00 0.00 3.02
3242 3581 7.566760 TCAAAGCTTTCTACACAAATTCTGA 57.433 32.000 9.23 0.00 0.00 3.27
3243 3582 9.897744 TTATCAAAGCTTTCTACACAAATTCTG 57.102 29.630 9.23 0.00 0.00 3.02
3257 3605 6.648502 CACGCAAAACATTTATCAAAGCTTT 58.351 32.000 5.69 5.69 0.00 3.51
3260 3608 4.150451 AGCACGCAAAACATTTATCAAAGC 59.850 37.500 0.00 0.00 0.00 3.51
3278 3626 6.392353 TCATGATAAATTTTTGCAAGCACG 57.608 33.333 0.00 0.00 0.00 5.34
3304 3652 6.662414 TTGTCACGACTTCCATGAATATTC 57.338 37.500 8.60 8.60 0.00 1.75
3307 3655 6.708502 TCTTTTTGTCACGACTTCCATGAATA 59.291 34.615 0.00 0.00 0.00 1.75
3318 3666 4.918583 TGGTTTTGTTCTTTTTGTCACGAC 59.081 37.500 0.00 0.00 0.00 4.34
3331 3679 5.854431 TTTTTGAAGCACTGGTTTTGTTC 57.146 34.783 0.00 0.00 0.00 3.18
3339 3687 6.790285 AAAATAGCATTTTTGAAGCACTGG 57.210 33.333 0.00 0.00 0.00 4.00
3392 3874 4.914983 ACTCTCTGAAATCATGGCAAAGA 58.085 39.130 0.00 0.00 0.00 2.52
3404 3886 4.769488 ACTGTCTCTGCATACTCTCTGAAA 59.231 41.667 0.00 0.00 0.00 2.69
3410 3892 1.133982 CGCACTGTCTCTGCATACTCT 59.866 52.381 0.00 0.00 34.00 3.24
3411 3893 1.135257 ACGCACTGTCTCTGCATACTC 60.135 52.381 0.00 0.00 34.00 2.59
3413 3895 1.272781 GACGCACTGTCTCTGCATAC 58.727 55.000 0.00 0.00 44.58 2.39
3429 4256 2.586900 GTCCGAAAGTGAGAAGAGACG 58.413 52.381 0.00 0.00 0.00 4.18
3434 4261 2.802816 CTGTTGGTCCGAAAGTGAGAAG 59.197 50.000 0.00 0.00 0.00 2.85
3479 4306 4.974275 TCAGAGTTTGACGTCTTTTCTACG 59.026 41.667 17.92 4.51 45.64 3.51
3487 4316 7.787725 ACTTAAAATTCAGAGTTTGACGTCT 57.212 32.000 17.92 0.00 34.94 4.18
3488 4317 8.120465 TGAACTTAAAATTCAGAGTTTGACGTC 58.880 33.333 9.11 9.11 34.94 4.34
3489 4318 7.981142 TGAACTTAAAATTCAGAGTTTGACGT 58.019 30.769 0.00 0.00 34.94 4.34
3522 4351 2.094338 ACTTATTTCCGGACCGAGACAC 60.094 50.000 17.49 0.00 0.00 3.67
3529 4358 1.004595 GCGTCACTTATTTCCGGACC 58.995 55.000 1.83 0.00 0.00 4.46
3546 4375 6.231365 CGTAGTATTTTGAACTACAACAGCG 58.769 40.000 12.41 0.00 46.32 5.18
3547 4376 6.366877 TCCGTAGTATTTTGAACTACAACAGC 59.633 38.462 12.41 0.00 46.32 4.40
3553 4382 5.801947 TCGCTTCCGTAGTATTTTGAACTAC 59.198 40.000 3.80 3.80 43.81 2.73
3584 4413 6.203338 ACAAGTTAGATTCGCTTCGGTAAAAA 59.797 34.615 0.00 0.00 0.00 1.94
3585 4414 5.697633 ACAAGTTAGATTCGCTTCGGTAAAA 59.302 36.000 0.00 0.00 0.00 1.52
3586 4415 5.232463 ACAAGTTAGATTCGCTTCGGTAAA 58.768 37.500 0.00 0.00 0.00 2.01
3587 4416 4.813027 ACAAGTTAGATTCGCTTCGGTAA 58.187 39.130 0.00 0.00 0.00 2.85
3588 4417 4.418392 GACAAGTTAGATTCGCTTCGGTA 58.582 43.478 0.00 0.00 0.00 4.02
3589 4418 3.251571 GACAAGTTAGATTCGCTTCGGT 58.748 45.455 0.00 0.00 0.00 4.69
3590 4419 2.603560 GGACAAGTTAGATTCGCTTCGG 59.396 50.000 0.00 0.00 0.00 4.30
3591 4420 2.603560 GGGACAAGTTAGATTCGCTTCG 59.396 50.000 0.00 0.00 0.00 3.79
3592 4421 3.596214 TGGGACAAGTTAGATTCGCTTC 58.404 45.455 0.00 0.00 31.92 3.86
3593 4422 3.695830 TGGGACAAGTTAGATTCGCTT 57.304 42.857 0.00 0.00 31.92 4.68
3608 4437 5.712152 AAAGTGAAGTTCATCAATGGGAC 57.288 39.130 9.18 0.00 0.00 4.46
3609 4438 5.598005 ACAAAAGTGAAGTTCATCAATGGGA 59.402 36.000 9.18 0.00 0.00 4.37
3610 4439 5.693104 CACAAAAGTGAAGTTCATCAATGGG 59.307 40.000 9.18 4.40 0.00 4.00
3611 4440 5.693104 CCACAAAAGTGAAGTTCATCAATGG 59.307 40.000 9.18 8.77 0.00 3.16
3612 4441 6.506147 TCCACAAAAGTGAAGTTCATCAATG 58.494 36.000 9.18 9.07 0.00 2.82
3615 4444 5.009911 CCATCCACAAAAGTGAAGTTCATCA 59.990 40.000 9.18 0.00 0.00 3.07
3624 4453 3.831323 ACACATCCATCCACAAAAGTGA 58.169 40.909 0.00 0.00 0.00 3.41
3628 4457 4.078537 CACCTACACATCCATCCACAAAA 58.921 43.478 0.00 0.00 0.00 2.44
3632 4461 1.837439 TCCACCTACACATCCATCCAC 59.163 52.381 0.00 0.00 0.00 4.02
3637 4466 2.311841 TCTCTCTCCACCTACACATCCA 59.688 50.000 0.00 0.00 0.00 3.41
3656 4485 1.115467 CCACCTCCTGCGAGTAATCT 58.885 55.000 0.00 0.00 33.93 2.40
3924 4759 4.000557 CTCGGTGTGTGTGTGCGC 62.001 66.667 0.00 0.00 0.00 6.09
3926 4761 2.534019 CCACTCGGTGTGTGTGTGC 61.534 63.158 9.12 0.00 44.81 4.57
3942 4783 3.582647 TCAAGTTCATCTCAAGTAGGCCA 59.417 43.478 5.01 0.00 0.00 5.36
3954 4803 6.036470 TCGTATGATCAGTGTCAAGTTCATC 58.964 40.000 0.09 0.00 0.00 2.92
3956 4805 5.385509 TCGTATGATCAGTGTCAAGTTCA 57.614 39.130 0.09 0.00 0.00 3.18
3957 4806 5.807520 ACATCGTATGATCAGTGTCAAGTTC 59.192 40.000 0.09 0.00 30.49 3.01
3958 4807 5.724328 ACATCGTATGATCAGTGTCAAGTT 58.276 37.500 0.09 0.00 30.49 2.66
3990 4860 2.626743 CCCATGGATGCTGAAGAATTCC 59.373 50.000 15.22 0.00 46.93 3.01
4023 4893 1.144936 CCCGAGCTCCATGTTCTCC 59.855 63.158 8.47 0.00 0.00 3.71
4059 4929 3.934391 GACTTGACCGACCTGGCCG 62.934 68.421 0.00 0.00 43.94 6.13
4127 4997 4.400251 GCCCATGTCATCAATCAAGAAAGA 59.600 41.667 0.00 0.00 0.00 2.52
4128 4998 4.158949 TGCCCATGTCATCAATCAAGAAAG 59.841 41.667 0.00 0.00 0.00 2.62
4132 5002 2.361119 CCTGCCCATGTCATCAATCAAG 59.639 50.000 0.00 0.00 0.00 3.02
4133 5003 2.291735 ACCTGCCCATGTCATCAATCAA 60.292 45.455 0.00 0.00 0.00 2.57
4135 5005 1.679680 CACCTGCCCATGTCATCAATC 59.320 52.381 0.00 0.00 0.00 2.67
4136 5006 1.285667 TCACCTGCCCATGTCATCAAT 59.714 47.619 0.00 0.00 0.00 2.57
4137 5007 0.697658 TCACCTGCCCATGTCATCAA 59.302 50.000 0.00 0.00 0.00 2.57
4139 5009 1.340405 ACTTCACCTGCCCATGTCATC 60.340 52.381 0.00 0.00 0.00 2.92
4140 5010 0.700564 ACTTCACCTGCCCATGTCAT 59.299 50.000 0.00 0.00 0.00 3.06
4141 5011 1.003118 GTACTTCACCTGCCCATGTCA 59.997 52.381 0.00 0.00 0.00 3.58
4142 5012 1.739067 GTACTTCACCTGCCCATGTC 58.261 55.000 0.00 0.00 0.00 3.06
4143 5013 0.036388 CGTACTTCACCTGCCCATGT 60.036 55.000 0.00 0.00 0.00 3.21
4215 5085 2.755876 ATCTGCCGCGTCAGGAGA 60.756 61.111 18.07 12.32 34.91 3.71
4605 5475 2.114670 GTGGCCCGTCATCACCATG 61.115 63.158 0.00 0.00 34.04 3.66
5004 5874 0.967380 GCACCTCTGACCAAATGGGG 60.967 60.000 4.17 0.00 42.91 4.96
5037 5907 3.055719 ATCGGCTTGTGCGGGTTG 61.056 61.111 0.00 0.00 40.82 3.77
5092 5962 2.320587 CCTTGAGCAGCGTGGTGAC 61.321 63.158 2.76 0.00 0.00 3.67
5103 5973 4.789075 TCGCCGTACGCCTTGAGC 62.789 66.667 10.49 5.77 43.23 4.26
5172 6042 2.932614 GTTCCGATCATCACAACTGGAG 59.067 50.000 0.00 0.00 0.00 3.86
5174 6044 1.660607 CGTTCCGATCATCACAACTGG 59.339 52.381 0.00 0.00 0.00 4.00
5175 6045 1.660607 CCGTTCCGATCATCACAACTG 59.339 52.381 0.00 0.00 0.00 3.16
5177 6047 0.373716 GCCGTTCCGATCATCACAAC 59.626 55.000 0.00 0.00 0.00 3.32
5178 6048 0.036858 TGCCGTTCCGATCATCACAA 60.037 50.000 0.00 0.00 0.00 3.33
5179 6049 0.460109 CTGCCGTTCCGATCATCACA 60.460 55.000 0.00 0.00 0.00 3.58
5180 6050 0.179111 TCTGCCGTTCCGATCATCAC 60.179 55.000 0.00 0.00 0.00 3.06
5181 6051 0.103026 CTCTGCCGTTCCGATCATCA 59.897 55.000 0.00 0.00 0.00 3.07
5182 6052 1.218230 GCTCTGCCGTTCCGATCATC 61.218 60.000 0.00 0.00 0.00 2.92
5190 6068 0.095417 GTGAATTCGCTCTGCCGTTC 59.905 55.000 11.80 0.00 0.00 3.95
5195 6073 2.975851 CAAACAAGTGAATTCGCTCTGC 59.024 45.455 21.29 0.00 35.32 4.26
5197 6075 4.154918 GGATCAAACAAGTGAATTCGCTCT 59.845 41.667 21.29 9.45 35.32 4.09
5226 6104 1.406539 GCGTCTGCATCCATTTCCATT 59.593 47.619 0.00 0.00 42.15 3.16
5266 6144 2.230940 GGCCATGTCGTCGATGTCG 61.231 63.158 4.21 0.00 41.45 4.35
5434 6315 2.818751 ATATGGCGGGGACTTTTTCA 57.181 45.000 0.00 0.00 0.00 2.69
5435 6316 3.181479 GGAAATATGGCGGGGACTTTTTC 60.181 47.826 0.00 0.00 0.00 2.29
5436 6317 2.764010 GGAAATATGGCGGGGACTTTTT 59.236 45.455 0.00 0.00 0.00 1.94
5447 6328 0.853530 AGTGGAGGGGGAAATATGGC 59.146 55.000 0.00 0.00 0.00 4.40
5448 6329 3.562176 GCATAGTGGAGGGGGAAATATGG 60.562 52.174 0.00 0.00 0.00 2.74
5466 6347 4.980339 ACATGTCAGATATGTGGGCATA 57.020 40.909 11.77 0.00 41.31 3.14
5474 6355 7.003939 TGCGAGTTAAAACATGTCAGATATG 57.996 36.000 0.00 5.63 0.00 1.78
5476 6357 5.580691 CCTGCGAGTTAAAACATGTCAGATA 59.419 40.000 0.00 0.00 0.00 1.98
5571 6452 5.853936 TCCATCTCACAGAAATATAACCCG 58.146 41.667 0.00 0.00 0.00 5.28
5572 6453 6.150140 GCATCCATCTCACAGAAATATAACCC 59.850 42.308 0.00 0.00 0.00 4.11
5573 6454 6.128445 CGCATCCATCTCACAGAAATATAACC 60.128 42.308 0.00 0.00 0.00 2.85
5574 6455 6.646653 TCGCATCCATCTCACAGAAATATAAC 59.353 38.462 0.00 0.00 0.00 1.89
5575 6456 6.646653 GTCGCATCCATCTCACAGAAATATAA 59.353 38.462 0.00 0.00 0.00 0.98
5576 6457 6.159293 GTCGCATCCATCTCACAGAAATATA 58.841 40.000 0.00 0.00 0.00 0.86
5577 6458 4.993584 GTCGCATCCATCTCACAGAAATAT 59.006 41.667 0.00 0.00 0.00 1.28
5578 6459 4.141959 TGTCGCATCCATCTCACAGAAATA 60.142 41.667 0.00 0.00 0.00 1.40
5579 6460 3.201290 GTCGCATCCATCTCACAGAAAT 58.799 45.455 0.00 0.00 0.00 2.17
5583 6464 1.865340 CATGTCGCATCCATCTCACAG 59.135 52.381 0.00 0.00 0.00 3.66
5584 6465 1.481772 TCATGTCGCATCCATCTCACA 59.518 47.619 0.00 0.00 0.00 3.58
5585 6466 1.863454 GTCATGTCGCATCCATCTCAC 59.137 52.381 0.00 0.00 0.00 3.51
5586 6467 1.202568 GGTCATGTCGCATCCATCTCA 60.203 52.381 0.00 0.00 0.00 3.27
5587 6468 1.202568 TGGTCATGTCGCATCCATCTC 60.203 52.381 0.00 0.00 0.00 2.75
5588 6469 0.832626 TGGTCATGTCGCATCCATCT 59.167 50.000 0.00 0.00 0.00 2.90
5589 6470 1.888215 ATGGTCATGTCGCATCCATC 58.112 50.000 0.00 0.00 34.30 3.51
5590 6471 2.224606 GAATGGTCATGTCGCATCCAT 58.775 47.619 0.00 7.02 40.10 3.41
5591 6472 1.065564 TGAATGGTCATGTCGCATCCA 60.066 47.619 0.00 3.82 0.00 3.41
5592 6473 1.331756 GTGAATGGTCATGTCGCATCC 59.668 52.381 0.00 0.00 35.80 3.51
5593 6474 2.009051 TGTGAATGGTCATGTCGCATC 58.991 47.619 0.00 0.00 35.80 3.91
5594 6475 2.112380 TGTGAATGGTCATGTCGCAT 57.888 45.000 0.00 0.00 35.80 4.73
5595 6476 1.889545 TTGTGAATGGTCATGTCGCA 58.110 45.000 0.00 0.00 35.80 5.10
5596 6477 2.987413 TTTGTGAATGGTCATGTCGC 57.013 45.000 0.00 0.00 35.80 5.19
5597 6478 4.090729 CGAATTTGTGAATGGTCATGTCG 58.909 43.478 0.00 0.00 35.80 4.35
5598 6479 5.046910 ACGAATTTGTGAATGGTCATGTC 57.953 39.130 0.00 0.00 35.80 3.06
5602 6483 3.551863 GGCAACGAATTTGTGAATGGTCA 60.552 43.478 0.00 0.00 37.54 4.02
5619 6500 2.611292 CCAGAGAATTCTCATCGGCAAC 59.389 50.000 31.79 7.46 45.21 4.17
5623 6504 4.118410 CAAGACCAGAGAATTCTCATCGG 58.882 47.826 31.79 28.25 45.21 4.18
5624 6505 3.555139 GCAAGACCAGAGAATTCTCATCG 59.445 47.826 31.79 21.45 45.21 3.84
5625 6506 4.571580 CAGCAAGACCAGAGAATTCTCATC 59.428 45.833 31.79 24.87 45.21 2.92
5635 6516 1.888215 TCAAAGCAGCAAGACCAGAG 58.112 50.000 0.00 0.00 0.00 3.35
5644 6525 4.223800 CGGCCTATCAAAGCAGCA 57.776 55.556 0.00 0.00 0.00 4.41
5645 6526 2.718107 GCGGCCTATCAAAGCAGC 59.282 61.111 0.00 0.00 42.67 5.25
5646 6527 2.537560 CGGCGGCCTATCAAAGCAG 61.538 63.158 18.34 0.00 0.00 4.24
5647 6528 2.513666 CGGCGGCCTATCAAAGCA 60.514 61.111 18.34 0.00 0.00 3.91
5648 6529 3.953887 GCGGCGGCCTATCAAAGC 61.954 66.667 18.34 7.27 0.00 3.51
5649 6530 0.531974 TAAGCGGCGGCCTATCAAAG 60.532 55.000 18.34 0.00 41.24 2.77
5650 6531 0.107831 ATAAGCGGCGGCCTATCAAA 59.892 50.000 18.34 0.00 41.24 2.69
5651 6532 0.602638 CATAAGCGGCGGCCTATCAA 60.603 55.000 18.34 0.00 41.24 2.57
5652 6533 1.005037 CATAAGCGGCGGCCTATCA 60.005 57.895 18.34 0.00 41.24 2.15
5653 6534 1.741770 CCATAAGCGGCGGCCTATC 60.742 63.158 18.34 6.08 41.24 2.08
5654 6535 2.347490 CCATAAGCGGCGGCCTAT 59.653 61.111 18.34 7.11 41.24 2.57
5655 6536 3.158648 ACCATAAGCGGCGGCCTA 61.159 61.111 18.34 4.68 41.24 3.93
5999 6880 3.206211 GATCTGGAGCGAGAGGCCG 62.206 68.421 0.00 0.00 45.17 6.13
6212 7093 0.371645 CGTCGATGGCTTTCTTGAGC 59.628 55.000 0.00 0.00 41.96 4.26
6215 7096 1.059369 CGCGTCGATGGCTTTCTTG 59.941 57.895 6.79 0.00 0.00 3.02
6540 7421 3.121030 GTAGGCGTGGCAGTGCAG 61.121 66.667 18.61 8.75 0.00 4.41
6631 7520 2.071540 TGCACGAAAAGCTCATCAGAG 58.928 47.619 0.00 0.00 44.96 3.35
6770 7659 0.321122 CTTCTTCACCTCAAGGCGCT 60.321 55.000 7.64 0.00 39.32 5.92
6852 7741 5.179368 TGGTTTGATTGATCAGAGACGAAAC 59.821 40.000 0.00 1.67 38.19 2.78
6855 7744 4.535526 TGGTTTGATTGATCAGAGACGA 57.464 40.909 0.00 0.00 38.19 4.20
6875 7764 4.500887 GCACATCCATCCATCCAGAAATTG 60.501 45.833 0.00 0.00 0.00 2.32
6876 7765 3.640029 GCACATCCATCCATCCAGAAATT 59.360 43.478 0.00 0.00 0.00 1.82
6877 7766 3.228453 GCACATCCATCCATCCAGAAAT 58.772 45.455 0.00 0.00 0.00 2.17
6878 7767 2.025131 TGCACATCCATCCATCCAGAAA 60.025 45.455 0.00 0.00 0.00 2.52
6879 7768 1.565288 TGCACATCCATCCATCCAGAA 59.435 47.619 0.00 0.00 0.00 3.02
6880 7769 1.142262 CTGCACATCCATCCATCCAGA 59.858 52.381 0.00 0.00 0.00 3.86
6881 7770 1.605753 CTGCACATCCATCCATCCAG 58.394 55.000 0.00 0.00 0.00 3.86
6882 7771 0.184211 CCTGCACATCCATCCATCCA 59.816 55.000 0.00 0.00 0.00 3.41
6883 7772 0.184451 ACCTGCACATCCATCCATCC 59.816 55.000 0.00 0.00 0.00 3.51
6884 7773 2.498167 GTACCTGCACATCCATCCATC 58.502 52.381 0.00 0.00 0.00 3.51
6885 7774 1.143684 GGTACCTGCACATCCATCCAT 59.856 52.381 4.06 0.00 0.00 3.41
7151 8040 0.248565 GCTGTGCTCTCTCACATGGA 59.751 55.000 0.00 0.00 44.88 3.41
7173 8094 0.442310 TACAGTGCGTACGACCGTAC 59.558 55.000 21.65 19.33 45.29 3.67
7174 8095 1.152510 TTACAGTGCGTACGACCGTA 58.847 50.000 21.65 13.43 0.00 4.02
7175 8096 0.523072 ATTACAGTGCGTACGACCGT 59.477 50.000 21.65 14.38 0.00 4.83
7176 8097 1.580704 GAATTACAGTGCGTACGACCG 59.419 52.381 21.65 9.26 0.00 4.79
7177 8098 2.597305 CAGAATTACAGTGCGTACGACC 59.403 50.000 21.65 8.04 0.00 4.79
7178 8099 2.597305 CCAGAATTACAGTGCGTACGAC 59.403 50.000 21.65 14.08 0.00 4.34
7186 8107 3.942829 TCTTCCTGCCAGAATTACAGTG 58.057 45.455 0.00 0.00 0.00 3.66
7196 8125 2.777969 GCAGTCATCTTCCTGCCAG 58.222 57.895 0.24 0.00 46.55 4.85
7232 8170 5.979993 TCATGCTTGCACATCCATAAAAAT 58.020 33.333 0.00 0.00 0.00 1.82
7233 8171 5.402997 TCATGCTTGCACATCCATAAAAA 57.597 34.783 0.00 0.00 0.00 1.94
7302 8240 2.391926 TGTACAACAGACCTCAGGGA 57.608 50.000 0.00 0.00 36.25 4.20
7303 8241 6.672266 ATATATGTACAACAGACCTCAGGG 57.328 41.667 0.00 0.00 38.88 4.45
7390 8328 7.162761 TGTCTCGGTTCATATCCAAGTAAAAA 58.837 34.615 0.00 0.00 0.00 1.94
7398 8336 5.362717 ACATACTTGTCTCGGTTCATATCCA 59.637 40.000 0.00 0.00 0.00 3.41
7407 8345 7.739498 ACAAATTTAACATACTTGTCTCGGT 57.261 32.000 0.00 0.00 34.06 4.69
7408 8346 7.537306 CCAACAAATTTAACATACTTGTCTCGG 59.463 37.037 0.00 0.00 34.06 4.63
7423 8361 7.920151 CCTCGAATGCAATATCCAACAAATTTA 59.080 33.333 0.00 0.00 0.00 1.40
7445 8383 9.757227 AGAGTTTGAGATATCTTTTTATCCTCG 57.243 33.333 6.70 0.00 30.29 4.63
7491 8429 0.109913 ATCGCCCAGACATGCATCAT 59.890 50.000 0.00 0.00 0.00 2.45
7504 8442 4.703703 GGCTTCATCCTATCGCCC 57.296 61.111 0.00 0.00 34.75 6.13
7523 8782 3.057337 CTCGGGAGGTTCGGTTGT 58.943 61.111 0.00 0.00 0.00 3.32
7537 8796 0.924090 CTCGGAGAAAATTCGGCTCG 59.076 55.000 0.00 0.00 34.09 5.03
7543 8802 3.065925 CCTTGGATGCTCGGAGAAAATTC 59.934 47.826 9.69 0.00 34.09 2.17
7544 8803 3.019564 CCTTGGATGCTCGGAGAAAATT 58.980 45.455 9.69 0.00 34.09 1.82
7551 8810 2.688666 AGGCCTTGGATGCTCGGA 60.689 61.111 0.00 0.00 0.00 4.55
7552 8811 2.203126 GAGGCCTTGGATGCTCGG 60.203 66.667 6.77 0.00 0.00 4.63
7553 8812 2.203126 GGAGGCCTTGGATGCTCG 60.203 66.667 6.77 0.00 0.00 5.03
7556 8815 1.325476 CCAAAGGAGGCCTTGGATGC 61.325 60.000 15.16 0.00 43.92 3.91
7563 8822 1.481242 CCTTCAAACCAAAGGAGGCCT 60.481 52.381 3.86 3.86 45.15 5.19
7582 8841 8.787852 GGGTAGAAAGATCATATGTGAAATTCC 58.212 37.037 1.90 0.00 38.01 3.01
7634 8894 6.494666 AGAATTCCTATGGTTTATCCGTCA 57.505 37.500 0.65 0.00 39.52 4.35
7671 8931 9.190317 ACCAGATGACTTTAAAGAACTTTTTCT 57.810 29.630 21.92 9.98 44.53 2.52
7677 8937 7.881775 ACAAACCAGATGACTTTAAAGAACT 57.118 32.000 21.92 11.15 0.00 3.01
7678 8938 8.290325 CCTACAAACCAGATGACTTTAAAGAAC 58.710 37.037 21.92 14.42 0.00 3.01
7679 8939 7.040686 GCCTACAAACCAGATGACTTTAAAGAA 60.041 37.037 21.92 9.70 0.00 2.52
7680 8940 6.430000 GCCTACAAACCAGATGACTTTAAAGA 59.570 38.462 21.92 0.30 0.00 2.52
7701 8961 5.542635 ACGTAGGAATAGAAATCCATGCCTA 59.457 40.000 0.00 0.00 39.55 3.93
7719 8979 4.683832 CATTGGTTCCTCTTCTACGTAGG 58.316 47.826 22.01 8.90 0.00 3.18
7720 8980 4.113354 GCATTGGTTCCTCTTCTACGTAG 58.887 47.826 16.73 16.73 0.00 3.51
7722 8982 2.567615 AGCATTGGTTCCTCTTCTACGT 59.432 45.455 0.00 0.00 0.00 3.57
7723 8983 3.252974 AGCATTGGTTCCTCTTCTACG 57.747 47.619 0.00 0.00 0.00 3.51
7724 8984 4.393371 GTGAAGCATTGGTTCCTCTTCTAC 59.607 45.833 22.14 10.54 39.02 2.59
7725 8985 4.041567 TGTGAAGCATTGGTTCCTCTTCTA 59.958 41.667 22.14 2.89 39.02 2.10
7726 8986 3.181440 TGTGAAGCATTGGTTCCTCTTCT 60.181 43.478 22.14 0.00 39.02 2.85
7727 8987 3.149196 TGTGAAGCATTGGTTCCTCTTC 58.851 45.455 22.14 8.76 39.02 2.87
7728 8988 3.228188 TGTGAAGCATTGGTTCCTCTT 57.772 42.857 22.14 0.00 39.02 2.85
7729 8989 2.957402 TGTGAAGCATTGGTTCCTCT 57.043 45.000 22.14 0.00 39.02 3.69
7730 8990 4.022068 TGAAATGTGAAGCATTGGTTCCTC 60.022 41.667 22.14 16.20 46.29 3.71
7791 9055 7.724506 AGAGATGTCATTTGATGCATAGGAAAT 59.275 33.333 0.00 2.07 30.80 2.17
7881 9146 6.241223 TCCTTTGGTCCCATAGGATATAGA 57.759 41.667 18.27 0.00 44.97 1.98
7895 9160 0.178961 ACCTTTGGCCTCCTTTGGTC 60.179 55.000 3.32 0.00 0.00 4.02
7896 9161 0.264657 AACCTTTGGCCTCCTTTGGT 59.735 50.000 3.32 0.72 0.00 3.67
7898 9163 0.681175 CCAACCTTTGGCCTCCTTTG 59.319 55.000 3.32 0.90 45.17 2.77
7899 9164 3.147826 CCAACCTTTGGCCTCCTTT 57.852 52.632 3.32 0.00 45.17 3.11
7910 9175 7.329746 ACATACAGCCATATATACCAACCTT 57.670 36.000 0.00 0.00 0.00 3.50
7916 9181 9.587772 CAAGTCTTACATACAGCCATATATACC 57.412 37.037 0.00 0.00 0.00 2.73
7927 9192 9.667107 TTTTTATCCTCCAAGTCTTACATACAG 57.333 33.333 0.00 0.00 0.00 2.74
7939 9204 8.055279 TGCAAGATAACTTTTTATCCTCCAAG 57.945 34.615 0.00 0.00 43.34 3.61
7976 9241 4.097714 CACCGCATCATGTATGTTTTGTC 58.902 43.478 0.00 0.00 37.93 3.18
7979 9244 2.159254 GCCACCGCATCATGTATGTTTT 60.159 45.455 0.00 0.00 37.93 2.43
8014 9279 2.753043 CCAGCACATGAGGCCACC 60.753 66.667 5.01 0.00 0.00 4.61
8019 9284 1.901591 ACTCAAACCAGCACATGAGG 58.098 50.000 0.00 0.00 42.76 3.86
8066 9331 3.792047 CACCACCACTGCATCGCG 61.792 66.667 0.00 0.00 0.00 5.87
8113 9378 1.297689 GCAGCTGATGGTGGAGTCA 59.702 57.895 20.43 0.00 41.57 3.41
8134 9399 3.327757 TCCTGTGCCATCTAAACTTCTGT 59.672 43.478 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.