Multiple sequence alignment - TraesCS4A01G224800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G224800 chr4A 100.000 7488 0 0 1 7488 532790942 532798429 0.000000e+00 13828.0
1 TraesCS4A01G224800 chr4A 75.323 620 115 31 3106 3700 54108094 54107488 5.760000e-66 263.0
2 TraesCS4A01G224800 chr4A 78.846 312 58 6 5900 6207 54107187 54106880 3.540000e-48 204.0
3 TraesCS4A01G224800 chr4B 93.178 4119 180 50 217 4282 94214444 94210374 0.000000e+00 5956.0
4 TraesCS4A01G224800 chr4B 91.550 2580 118 46 4778 7324 94209820 94207308 0.000000e+00 3465.0
5 TraesCS4A01G224800 chr4B 85.596 361 13 11 4401 4746 94210256 94209920 7.190000e-90 342.0
6 TraesCS4A01G224800 chr4B 93.820 178 11 0 7311 7488 94207236 94207059 1.240000e-67 268.0
7 TraesCS4A01G224800 chr4B 74.322 627 117 36 3102 3700 489089049 489088439 7.560000e-55 226.0
8 TraesCS4A01G224800 chr4B 78.846 312 58 8 5900 6207 489088139 489087832 3.540000e-48 204.0
9 TraesCS4A01G224800 chr4D 93.864 3781 138 37 399 4127 63590973 63587235 0.000000e+00 5611.0
10 TraesCS4A01G224800 chr4D 92.800 2361 111 29 4978 7324 63586358 63584043 0.000000e+00 3363.0
11 TraesCS4A01G224800 chr4D 89.636 357 17 5 4380 4736 63587019 63586683 3.210000e-118 436.0
12 TraesCS4A01G224800 chr4D 90.323 217 11 5 4778 4994 63586579 63586373 7.400000e-70 276.0
13 TraesCS4A01G224800 chr4D 75.323 620 115 31 3106 3700 397095220 397094614 5.760000e-66 263.0
14 TraesCS4A01G224800 chr4D 80.259 309 49 9 5900 6202 397094315 397094013 9.780000e-54 222.0
15 TraesCS4A01G224800 chr1B 99.384 2597 16 0 1233 3829 222207250 222209846 0.000000e+00 4708.0
16 TraesCS4A01G224800 chr1B 72.247 2234 472 118 1659 3797 687280401 687278221 8.490000e-154 555.0
17 TraesCS4A01G224800 chr1B 97.884 189 4 0 3863 4051 222209839 222210027 2.010000e-85 327.0
18 TraesCS4A01G224800 chr1B 88.119 101 12 0 5900 6000 687276778 687276678 3.670000e-23 121.0
19 TraesCS4A01G224800 chr1B 81.944 144 18 6 10 149 526368013 526368152 1.710000e-21 115.0
20 TraesCS4A01G224800 chrUn 100.000 384 0 0 2249 2632 480914301 480914684 0.000000e+00 710.0
21 TraesCS4A01G224800 chr1D 72.864 2060 417 114 1744 3702 494013599 494011581 1.810000e-160 577.0
22 TraesCS4A01G224800 chr1D 79.375 160 24 7 1 152 335345786 335345628 3.700000e-18 104.0
23 TraesCS4A01G224800 chr7B 77.313 454 63 24 3346 3791 713041724 713042145 1.620000e-56 231.0
24 TraesCS4A01G224800 chr7A 86.466 133 18 0 5903 6035 712180955 712181087 6.050000e-31 147.0
25 TraesCS4A01G224800 chr7D 85.714 133 19 0 5903 6035 618489479 618489611 2.820000e-29 141.0
26 TraesCS4A01G224800 chr6B 83.974 156 16 9 1 150 46358562 46358714 2.820000e-29 141.0
27 TraesCS4A01G224800 chr2A 83.117 154 22 4 1 152 83779279 83779128 3.640000e-28 137.0
28 TraesCS4A01G224800 chr2A 84.034 119 13 5 28 142 621445375 621445259 7.940000e-20 110.0
29 TraesCS4A01G224800 chr3A 82.895 152 23 3 2 151 336932443 336932293 4.710000e-27 134.0
30 TraesCS4A01G224800 chr3A 81.818 154 20 6 1 150 497652920 497653069 1.020000e-23 122.0
31 TraesCS4A01G224800 chr2D 81.529 157 19 6 1 151 48570183 48570335 3.670000e-23 121.0
32 TraesCS4A01G224800 chr1A 88.119 101 12 0 5900 6000 592529385 592529285 3.670000e-23 121.0
33 TraesCS4A01G224800 chr2B 83.459 133 12 7 26 151 596674819 596674948 1.710000e-21 115.0
34 TraesCS4A01G224800 chr5D 100.000 28 0 0 2231 2258 491096612 491096639 1.400000e-02 52.8
35 TraesCS4A01G224800 chr5B 100.000 28 0 0 2231 2258 605823323 605823350 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G224800 chr4A 532790942 532798429 7487 False 13828.00 13828 100.00000 1 7488 1 chr4A.!!$F1 7487
1 TraesCS4A01G224800 chr4A 54106880 54108094 1214 True 233.50 263 77.08450 3106 6207 2 chr4A.!!$R1 3101
2 TraesCS4A01G224800 chr4B 94207059 94214444 7385 True 2507.75 5956 91.03600 217 7488 4 chr4B.!!$R1 7271
3 TraesCS4A01G224800 chr4B 489087832 489089049 1217 True 215.00 226 76.58400 3102 6207 2 chr4B.!!$R2 3105
4 TraesCS4A01G224800 chr4D 63584043 63590973 6930 True 2421.50 5611 91.65575 399 7324 4 chr4D.!!$R1 6925
5 TraesCS4A01G224800 chr4D 397094013 397095220 1207 True 242.50 263 77.79100 3106 6202 2 chr4D.!!$R2 3096
6 TraesCS4A01G224800 chr1B 222207250 222210027 2777 False 2517.50 4708 98.63400 1233 4051 2 chr1B.!!$F2 2818
7 TraesCS4A01G224800 chr1B 687276678 687280401 3723 True 338.00 555 80.18300 1659 6000 2 chr1B.!!$R1 4341
8 TraesCS4A01G224800 chr1D 494011581 494013599 2018 True 577.00 577 72.86400 1744 3702 1 chr1D.!!$R2 1958

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
790 804 0.036022 AGAGACACCCAAAGCAGAGC 59.964 55.000 0.00 0.00 0.00 4.09 F
791 805 0.957888 GAGACACCCAAAGCAGAGCC 60.958 60.000 0.00 0.00 0.00 4.70 F
1022 1036 1.348696 CATCCATCCATCCATCCGTCA 59.651 52.381 0.00 0.00 0.00 4.35 F
1113 1127 1.845809 CTCACCACAGTTCGCAAGCC 61.846 60.000 0.00 0.00 37.18 4.35 F
4044 4204 1.659098 CCTGATTAGGTTTGTCGCGAC 59.341 52.381 31.66 31.66 39.39 5.19 F
5102 5441 0.039074 GGACACACTCACTCACTCCG 60.039 60.000 0.00 0.00 0.00 4.63 F
5635 5995 0.462581 TTCCTAGCATGCCAAGCTCG 60.463 55.000 15.66 0.00 42.32 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
3828 3968 4.027540 GCGATAAGCGACTAGAGACAAAAC 60.028 45.833 0.00 0.00 44.57 2.43 R
3857 3997 4.864334 CCCCTCATCGGCAGGCAC 62.864 72.222 0.00 0.00 0.00 5.01 R
3863 4003 0.533755 CTGATTGACCCCTCATCGGC 60.534 60.000 0.00 0.00 0.00 5.54 R
4164 4336 0.471617 AAACAGTGAGGCAGTGAGCT 59.528 50.000 9.07 0.00 44.79 4.09 R
5735 6095 0.027586 GTGTTCTCAACGTGCACCAC 59.972 55.000 12.15 7.05 0.00 4.16 R
6361 7594 1.005097 TCGGCCCTGAGTACTCTGTAA 59.995 52.381 23.01 2.48 0.00 2.41 R
7371 8689 1.281867 CAAGAGTACTGGGGCATTGGA 59.718 52.381 0.00 0.00 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.741029 GCGTTATGCAGTCTCTCCA 57.259 52.632 0.00 0.00 45.45 3.86
19 20 2.231215 GCGTTATGCAGTCTCTCCAT 57.769 50.000 0.00 0.00 45.45 3.41
20 21 1.863454 GCGTTATGCAGTCTCTCCATG 59.137 52.381 0.00 0.00 45.45 3.66
21 22 2.481969 GCGTTATGCAGTCTCTCCATGA 60.482 50.000 0.00 0.00 45.45 3.07
22 23 3.119291 CGTTATGCAGTCTCTCCATGAC 58.881 50.000 0.00 0.00 34.88 3.06
23 24 3.181482 CGTTATGCAGTCTCTCCATGACT 60.181 47.826 0.00 0.00 44.62 3.41
24 25 4.036852 CGTTATGCAGTCTCTCCATGACTA 59.963 45.833 0.00 0.00 42.21 2.59
25 26 5.285651 GTTATGCAGTCTCTCCATGACTAC 58.714 45.833 0.00 0.00 42.21 2.73
26 27 3.093057 TGCAGTCTCTCCATGACTACT 57.907 47.619 0.00 0.00 42.21 2.57
27 28 3.435275 TGCAGTCTCTCCATGACTACTT 58.565 45.455 0.00 0.00 42.21 2.24
28 29 3.194329 TGCAGTCTCTCCATGACTACTTG 59.806 47.826 0.00 0.00 42.21 3.16
29 30 3.194542 GCAGTCTCTCCATGACTACTTGT 59.805 47.826 0.00 0.00 42.21 3.16
30 31 4.399618 GCAGTCTCTCCATGACTACTTGTA 59.600 45.833 0.00 0.00 42.21 2.41
31 32 5.068460 GCAGTCTCTCCATGACTACTTGTAT 59.932 44.000 0.00 0.00 42.21 2.29
32 33 6.406400 GCAGTCTCTCCATGACTACTTGTATT 60.406 42.308 0.00 0.00 42.21 1.89
33 34 7.199766 CAGTCTCTCCATGACTACTTGTATTC 58.800 42.308 0.00 0.00 42.21 1.75
34 35 6.322712 AGTCTCTCCATGACTACTTGTATTCC 59.677 42.308 0.00 0.00 42.28 3.01
35 36 6.096987 GTCTCTCCATGACTACTTGTATTCCA 59.903 42.308 0.00 0.00 0.00 3.53
36 37 6.667848 TCTCTCCATGACTACTTGTATTCCAA 59.332 38.462 0.00 0.00 0.00 3.53
37 38 6.640518 TCTCCATGACTACTTGTATTCCAAC 58.359 40.000 0.00 0.00 0.00 3.77
38 39 6.440647 TCTCCATGACTACTTGTATTCCAACT 59.559 38.462 0.00 0.00 0.00 3.16
39 40 7.016153 TCCATGACTACTTGTATTCCAACTT 57.984 36.000 0.00 0.00 0.00 2.66
40 41 7.458397 TCCATGACTACTTGTATTCCAACTTT 58.542 34.615 0.00 0.00 0.00 2.66
41 42 7.942341 TCCATGACTACTTGTATTCCAACTTTT 59.058 33.333 0.00 0.00 0.00 2.27
42 43 8.576442 CCATGACTACTTGTATTCCAACTTTTT 58.424 33.333 0.00 0.00 0.00 1.94
67 68 8.940768 TTTTTAGTTTTTGGATCTTGGACTTG 57.059 30.769 0.00 0.00 0.00 3.16
68 69 7.654022 TTTAGTTTTTGGATCTTGGACTTGT 57.346 32.000 0.00 0.00 0.00 3.16
69 70 7.654022 TTAGTTTTTGGATCTTGGACTTGTT 57.346 32.000 0.00 0.00 0.00 2.83
70 71 6.544928 AGTTTTTGGATCTTGGACTTGTTT 57.455 33.333 0.00 0.00 0.00 2.83
71 72 6.340522 AGTTTTTGGATCTTGGACTTGTTTG 58.659 36.000 0.00 0.00 0.00 2.93
72 73 4.935352 TTTGGATCTTGGACTTGTTTGG 57.065 40.909 0.00 0.00 0.00 3.28
73 74 2.238521 TGGATCTTGGACTTGTTTGGC 58.761 47.619 0.00 0.00 0.00 4.52
74 75 2.158475 TGGATCTTGGACTTGTTTGGCT 60.158 45.455 0.00 0.00 0.00 4.75
75 76 2.229784 GGATCTTGGACTTGTTTGGCTG 59.770 50.000 0.00 0.00 0.00 4.85
76 77 2.435372 TCTTGGACTTGTTTGGCTGT 57.565 45.000 0.00 0.00 0.00 4.40
77 78 2.023673 TCTTGGACTTGTTTGGCTGTG 58.976 47.619 0.00 0.00 0.00 3.66
78 79 1.750778 CTTGGACTTGTTTGGCTGTGT 59.249 47.619 0.00 0.00 0.00 3.72
79 80 1.102154 TGGACTTGTTTGGCTGTGTG 58.898 50.000 0.00 0.00 0.00 3.82
80 81 0.249031 GGACTTGTTTGGCTGTGTGC 60.249 55.000 0.00 0.00 41.94 4.57
81 82 0.455410 GACTTGTTTGGCTGTGTGCA 59.545 50.000 0.00 0.00 45.15 4.57
82 83 1.067516 GACTTGTTTGGCTGTGTGCAT 59.932 47.619 0.00 0.00 45.15 3.96
83 84 1.067516 ACTTGTTTGGCTGTGTGCATC 59.932 47.619 0.00 0.00 45.15 3.91
84 85 1.338973 CTTGTTTGGCTGTGTGCATCT 59.661 47.619 0.00 0.00 45.15 2.90
85 86 0.953727 TGTTTGGCTGTGTGCATCTC 59.046 50.000 0.00 0.00 45.15 2.75
86 87 0.110056 GTTTGGCTGTGTGCATCTCG 60.110 55.000 0.00 0.00 45.15 4.04
87 88 1.236616 TTTGGCTGTGTGCATCTCGG 61.237 55.000 0.00 0.00 45.15 4.63
88 89 2.046892 GGCTGTGTGCATCTCGGT 60.047 61.111 0.00 0.00 45.15 4.69
89 90 1.672356 GGCTGTGTGCATCTCGGTT 60.672 57.895 0.00 0.00 45.15 4.44
90 91 0.391130 GGCTGTGTGCATCTCGGTTA 60.391 55.000 0.00 0.00 45.15 2.85
91 92 0.721718 GCTGTGTGCATCTCGGTTAC 59.278 55.000 0.00 0.00 42.31 2.50
92 93 1.939381 GCTGTGTGCATCTCGGTTACA 60.939 52.381 0.00 0.00 42.31 2.41
93 94 1.726791 CTGTGTGCATCTCGGTTACAC 59.273 52.381 0.00 0.00 41.36 2.90
94 95 1.069358 TGTGTGCATCTCGGTTACACA 59.931 47.619 0.00 0.00 46.42 3.72
95 96 1.726791 GTGTGCATCTCGGTTACACAG 59.273 52.381 0.00 0.00 41.54 3.66
96 97 1.616374 TGTGCATCTCGGTTACACAGA 59.384 47.619 0.00 0.00 36.39 3.41
97 98 2.263077 GTGCATCTCGGTTACACAGAG 58.737 52.381 0.00 0.00 40.95 3.35
98 99 1.204704 TGCATCTCGGTTACACAGAGG 59.795 52.381 4.51 0.00 40.18 3.69
99 100 1.927895 CATCTCGGTTACACAGAGGC 58.072 55.000 4.51 0.00 40.18 4.70
100 101 0.824759 ATCTCGGTTACACAGAGGCC 59.175 55.000 0.00 0.00 40.18 5.19
101 102 1.153823 CTCGGTTACACAGAGGCCG 60.154 63.158 0.00 0.00 43.32 6.13
102 103 2.125673 CGGTTACACAGAGGCCGG 60.126 66.667 0.00 0.00 38.86 6.13
103 104 2.267961 GGTTACACAGAGGCCGGG 59.732 66.667 2.18 0.00 0.00 5.73
104 105 2.590114 GGTTACACAGAGGCCGGGT 61.590 63.158 2.18 0.00 0.00 5.28
105 106 1.375523 GTTACACAGAGGCCGGGTG 60.376 63.158 18.86 18.86 38.47 4.61
106 107 1.839747 TTACACAGAGGCCGGGTGT 60.840 57.895 25.86 25.86 46.57 4.16
107 108 0.542467 TTACACAGAGGCCGGGTGTA 60.542 55.000 24.24 24.24 43.43 2.90
108 109 0.542467 TACACAGAGGCCGGGTGTAA 60.542 55.000 25.21 14.36 42.99 2.41
109 110 1.198759 ACACAGAGGCCGGGTGTAAT 61.199 55.000 22.94 6.77 43.43 1.89
110 111 0.744414 CACAGAGGCCGGGTGTAATG 60.744 60.000 2.18 1.79 0.00 1.90
111 112 1.819632 CAGAGGCCGGGTGTAATGC 60.820 63.158 2.18 0.00 0.00 3.56
112 113 1.995626 AGAGGCCGGGTGTAATGCT 60.996 57.895 2.18 0.00 0.00 3.79
113 114 1.077716 GAGGCCGGGTGTAATGCTT 60.078 57.895 2.18 0.00 0.00 3.91
114 115 0.179468 GAGGCCGGGTGTAATGCTTA 59.821 55.000 2.18 0.00 0.00 3.09
115 116 0.621609 AGGCCGGGTGTAATGCTTAA 59.378 50.000 2.18 0.00 0.00 1.85
116 117 1.004979 AGGCCGGGTGTAATGCTTAAA 59.995 47.619 2.18 0.00 0.00 1.52
117 118 1.133598 GGCCGGGTGTAATGCTTAAAC 59.866 52.381 2.18 0.00 0.00 2.01
118 119 1.133598 GCCGGGTGTAATGCTTAAACC 59.866 52.381 2.18 6.69 41.91 3.27
119 120 2.718563 CCGGGTGTAATGCTTAAACCT 58.281 47.619 12.33 0.00 42.23 3.50
120 121 3.086282 CCGGGTGTAATGCTTAAACCTT 58.914 45.455 12.33 0.00 42.23 3.50
121 122 3.508402 CCGGGTGTAATGCTTAAACCTTT 59.492 43.478 12.33 0.00 42.23 3.11
122 123 4.021807 CCGGGTGTAATGCTTAAACCTTTT 60.022 41.667 12.33 0.00 42.23 2.27
123 124 5.183522 CCGGGTGTAATGCTTAAACCTTTTA 59.816 40.000 12.33 0.00 42.23 1.52
124 125 6.294620 CCGGGTGTAATGCTTAAACCTTTTAA 60.295 38.462 12.33 0.00 42.23 1.52
125 126 6.804783 CGGGTGTAATGCTTAAACCTTTTAAG 59.195 38.462 12.23 12.23 42.23 1.85
138 139 7.905604 AAACCTTTTAAGCAATAAAGCATCC 57.094 32.000 0.00 0.00 35.03 3.51
139 140 6.857437 ACCTTTTAAGCAATAAAGCATCCT 57.143 33.333 0.00 0.00 35.03 3.24
140 141 7.244886 ACCTTTTAAGCAATAAAGCATCCTT 57.755 32.000 0.00 0.00 35.03 3.36
141 142 7.679783 ACCTTTTAAGCAATAAAGCATCCTTT 58.320 30.769 0.00 0.00 43.43 3.11
142 143 8.811994 ACCTTTTAAGCAATAAAGCATCCTTTA 58.188 29.630 0.00 0.00 44.98 1.85
154 155 6.530019 AAGCATCCTTTATCGAAAAATGGT 57.470 33.333 12.61 8.52 33.35 3.55
155 156 5.894807 AGCATCCTTTATCGAAAAATGGTG 58.105 37.500 12.61 11.40 31.95 4.17
156 157 5.043248 GCATCCTTTATCGAAAAATGGTGG 58.957 41.667 12.61 8.90 0.00 4.61
157 158 5.163561 GCATCCTTTATCGAAAAATGGTGGA 60.164 40.000 12.61 7.55 0.00 4.02
158 159 6.498304 CATCCTTTATCGAAAAATGGTGGAG 58.502 40.000 12.61 0.00 0.00 3.86
159 160 4.398044 TCCTTTATCGAAAAATGGTGGAGC 59.602 41.667 12.61 0.00 0.00 4.70
160 161 4.440112 CCTTTATCGAAAAATGGTGGAGCC 60.440 45.833 0.00 0.00 37.90 4.70
168 169 2.525075 TGGTGGAGCCATTTGCCA 59.475 55.556 0.00 0.00 43.61 4.92
169 170 1.078891 TGGTGGAGCCATTTGCCAT 59.921 52.632 0.00 0.00 43.61 4.40
170 171 0.544833 TGGTGGAGCCATTTGCCATT 60.545 50.000 0.00 0.00 43.61 3.16
171 172 0.614812 GGTGGAGCCATTTGCCATTT 59.385 50.000 0.00 0.00 42.71 2.32
172 173 1.405933 GGTGGAGCCATTTGCCATTTC 60.406 52.381 0.00 0.00 42.71 2.17
173 174 1.551883 GTGGAGCCATTTGCCATTTCT 59.448 47.619 0.00 0.00 42.71 2.52
174 175 2.760092 GTGGAGCCATTTGCCATTTCTA 59.240 45.455 0.00 0.00 42.71 2.10
175 176 3.385755 GTGGAGCCATTTGCCATTTCTAT 59.614 43.478 0.00 0.00 42.71 1.98
176 177 4.584325 GTGGAGCCATTTGCCATTTCTATA 59.416 41.667 0.00 0.00 42.71 1.31
177 178 4.828939 TGGAGCCATTTGCCATTTCTATAG 59.171 41.667 0.00 0.00 42.71 1.31
178 179 5.072741 GGAGCCATTTGCCATTTCTATAGA 58.927 41.667 0.00 0.00 42.71 1.98
179 180 5.536161 GGAGCCATTTGCCATTTCTATAGAA 59.464 40.000 11.24 11.24 42.71 2.10
180 181 6.040842 GGAGCCATTTGCCATTTCTATAGAAA 59.959 38.462 26.04 26.04 43.83 2.52
181 182 7.256083 GGAGCCATTTGCCATTTCTATAGAAAT 60.256 37.037 27.75 27.75 45.13 2.17
182 183 8.026396 AGCCATTTGCCATTTCTATAGAAATT 57.974 30.769 29.88 16.63 45.27 1.82
183 184 9.146586 AGCCATTTGCCATTTCTATAGAAATTA 57.853 29.630 29.88 19.43 45.27 1.40
206 207 9.976511 ATTATTGAAGTTGCAATTATCAGGATG 57.023 29.630 0.59 0.00 39.15 3.51
207 208 5.840243 TGAAGTTGCAATTATCAGGATGG 57.160 39.130 0.59 0.00 36.16 3.51
208 209 5.263599 TGAAGTTGCAATTATCAGGATGGT 58.736 37.500 0.59 0.00 36.16 3.55
209 210 5.716228 TGAAGTTGCAATTATCAGGATGGTT 59.284 36.000 0.59 0.00 36.16 3.67
210 211 6.211184 TGAAGTTGCAATTATCAGGATGGTTT 59.789 34.615 0.59 0.00 36.16 3.27
211 212 7.395772 TGAAGTTGCAATTATCAGGATGGTTTA 59.604 33.333 0.59 0.00 36.16 2.01
212 213 7.338800 AGTTGCAATTATCAGGATGGTTTAG 57.661 36.000 0.59 0.00 36.16 1.85
213 214 7.118723 AGTTGCAATTATCAGGATGGTTTAGA 58.881 34.615 0.59 0.00 36.16 2.10
214 215 7.781693 AGTTGCAATTATCAGGATGGTTTAGAT 59.218 33.333 0.59 0.00 36.16 1.98
215 216 8.416329 GTTGCAATTATCAGGATGGTTTAGATT 58.584 33.333 0.59 0.00 36.16 2.40
229 230 7.880160 TGGTTTAGATTTCACCCTCATAATG 57.120 36.000 0.00 0.00 0.00 1.90
250 251 3.651904 TGCCTAGGGTTTTGTAGGTGTTA 59.348 43.478 11.72 0.00 38.52 2.41
265 266 6.993902 TGTAGGTGTTAAACTTTAAGAGTGGG 59.006 38.462 0.00 0.00 39.00 4.61
283 284 3.039743 TGGGTTTTGGGGGTTAAGTTTC 58.960 45.455 0.00 0.00 0.00 2.78
290 291 1.897133 GGGGGTTAAGTTTCGGCAATT 59.103 47.619 0.00 0.00 0.00 2.32
306 307 6.167685 TCGGCAATTAGTTAAGAGTTGCTTA 58.832 36.000 13.79 0.00 43.36 3.09
320 321 4.692228 AGTTGCTTACCAAAAACCACATG 58.308 39.130 0.00 0.00 34.68 3.21
322 323 2.224161 TGCTTACCAAAAACCACATGGC 60.224 45.455 0.00 0.00 37.77 4.40
336 337 3.133691 CACATGGCATACGATGTAAGCT 58.866 45.455 0.00 0.00 31.46 3.74
337 338 3.059393 CACATGGCATACGATGTAAGCTG 60.059 47.826 0.00 0.00 31.46 4.24
338 339 3.181466 ACATGGCATACGATGTAAGCTGA 60.181 43.478 0.00 0.00 30.86 4.26
339 340 3.097877 TGGCATACGATGTAAGCTGAG 57.902 47.619 4.47 0.00 0.00 3.35
396 397 5.241728 CCAAAACCTTCTTTCCTCCTTGTAG 59.758 44.000 0.00 0.00 0.00 2.74
397 398 3.704800 ACCTTCTTTCCTCCTTGTAGC 57.295 47.619 0.00 0.00 0.00 3.58
433 434 3.810310 TGGCACACATACACATATCGA 57.190 42.857 0.00 0.00 0.00 3.59
528 529 2.489722 GACCAGAGTGCATTTCCCTTTC 59.510 50.000 0.00 0.00 0.00 2.62
584 585 4.645136 CCTTTCTAAATACTCCCCAAAGCC 59.355 45.833 0.00 0.00 0.00 4.35
719 729 9.201127 GAAAGATAAAGCAAAAAGAGAAGCAAT 57.799 29.630 0.00 0.00 0.00 3.56
720 730 8.530269 AAGATAAAGCAAAAAGAGAAGCAATG 57.470 30.769 0.00 0.00 0.00 2.82
728 742 5.495926 AAAAGAGAAGCAATGGAGAGAGA 57.504 39.130 0.00 0.00 0.00 3.10
733 747 4.288398 AGAAGCAATGGAGAGAGAGATGA 58.712 43.478 0.00 0.00 0.00 2.92
735 749 4.675976 AGCAATGGAGAGAGAGATGAAG 57.324 45.455 0.00 0.00 0.00 3.02
749 763 3.885297 GAGATGAAGAGGACCAGAGAGAG 59.115 52.174 0.00 0.00 0.00 3.20
750 764 2.523325 TGAAGAGGACCAGAGAGAGG 57.477 55.000 0.00 0.00 0.00 3.69
751 765 1.996291 TGAAGAGGACCAGAGAGAGGA 59.004 52.381 0.00 0.00 0.00 3.71
752 766 2.025416 TGAAGAGGACCAGAGAGAGGAG 60.025 54.545 0.00 0.00 0.00 3.69
790 804 0.036022 AGAGACACCCAAAGCAGAGC 59.964 55.000 0.00 0.00 0.00 4.09
791 805 0.957888 GAGACACCCAAAGCAGAGCC 60.958 60.000 0.00 0.00 0.00 4.70
792 806 1.973812 GACACCCAAAGCAGAGCCC 60.974 63.158 0.00 0.00 0.00 5.19
793 807 3.058160 CACCCAAAGCAGAGCCCG 61.058 66.667 0.00 0.00 0.00 6.13
858 872 5.594926 CTCAAAAGACAAAGCCATTCTTGT 58.405 37.500 0.00 0.00 34.67 3.16
885 899 2.254023 AGAGAACATATTCCCCTCCCCT 59.746 50.000 0.00 0.00 35.18 4.79
886 900 3.056832 GAGAACATATTCCCCTCCCCTT 58.943 50.000 0.00 0.00 35.18 3.95
887 901 3.056832 AGAACATATTCCCCTCCCCTTC 58.943 50.000 0.00 0.00 35.18 3.46
888 902 2.605825 ACATATTCCCCTCCCCTTCA 57.394 50.000 0.00 0.00 0.00 3.02
889 903 2.136026 ACATATTCCCCTCCCCTTCAC 58.864 52.381 0.00 0.00 0.00 3.18
890 904 1.425448 CATATTCCCCTCCCCTTCACC 59.575 57.143 0.00 0.00 0.00 4.02
1022 1036 1.348696 CATCCATCCATCCATCCGTCA 59.651 52.381 0.00 0.00 0.00 4.35
1113 1127 1.845809 CTCACCACAGTTCGCAAGCC 61.846 60.000 0.00 0.00 37.18 4.35
1154 1168 2.376518 TGAAGGCTCTCCATCCTTTTGT 59.623 45.455 0.00 0.00 42.37 2.83
1167 1181 3.480470 TCCTTTTGTCTTGCTCTCCTTG 58.520 45.455 0.00 0.00 0.00 3.61
1168 1182 3.136443 TCCTTTTGTCTTGCTCTCCTTGA 59.864 43.478 0.00 0.00 0.00 3.02
1170 1184 4.522022 CCTTTTGTCTTGCTCTCCTTGATT 59.478 41.667 0.00 0.00 0.00 2.57
1171 1185 5.010415 CCTTTTGTCTTGCTCTCCTTGATTT 59.990 40.000 0.00 0.00 0.00 2.17
1174 1188 5.695851 TGTCTTGCTCTCCTTGATTTTTC 57.304 39.130 0.00 0.00 0.00 2.29
1179 1193 7.389053 GTCTTGCTCTCCTTGATTTTTCTTCTA 59.611 37.037 0.00 0.00 0.00 2.10
1181 1195 5.940470 TGCTCTCCTTGATTTTTCTTCTACC 59.060 40.000 0.00 0.00 0.00 3.18
1190 1204 9.401058 CTTGATTTTTCTTCTACCACTATCCAT 57.599 33.333 0.00 0.00 0.00 3.41
1193 1207 5.531122 TTTCTTCTACCACTATCCATCGG 57.469 43.478 0.00 0.00 0.00 4.18
1201 1215 2.031069 CCACTATCCATCGGTAGTGTCG 60.031 54.545 9.53 0.00 43.88 4.35
1202 1216 2.876550 CACTATCCATCGGTAGTGTCGA 59.123 50.000 2.81 0.00 41.67 4.20
1905 1919 3.241530 TCCAACTGCGGCCTCACT 61.242 61.111 0.00 0.00 0.00 3.41
3828 3968 3.181521 CGTTACATACACATGTGCTGGTG 60.182 47.826 25.68 19.22 45.17 4.17
4044 4204 1.659098 CCTGATTAGGTTTGTCGCGAC 59.341 52.381 31.66 31.66 39.39 5.19
4051 4211 5.731599 TTAGGTTTGTCGCGACTTAAAAA 57.268 34.783 36.27 25.56 0.00 1.94
4097 4261 3.738281 GCACGCAGATAGTGATAGTGGTT 60.738 47.826 0.07 0.00 41.83 3.67
4098 4262 4.499188 GCACGCAGATAGTGATAGTGGTTA 60.499 45.833 0.07 0.00 41.83 2.85
4099 4263 5.215903 CACGCAGATAGTGATAGTGGTTAG 58.784 45.833 0.00 0.00 41.83 2.34
4166 4338 3.495670 CACAGTGAGTGTAGGAGTAGC 57.504 52.381 0.00 0.00 43.40 3.58
4167 4339 3.085533 CACAGTGAGTGTAGGAGTAGCT 58.914 50.000 0.00 0.00 43.40 3.32
4168 4340 3.127895 CACAGTGAGTGTAGGAGTAGCTC 59.872 52.174 0.00 0.00 43.40 4.09
4169 4341 3.244946 ACAGTGAGTGTAGGAGTAGCTCA 60.245 47.826 0.00 0.00 37.75 4.26
4170 4342 3.768468 GTGAGTGTAGGAGTAGCTCAC 57.232 52.381 7.15 7.15 45.70 3.51
4171 4343 3.722908 TGAGTGTAGGAGTAGCTCACT 57.277 47.619 1.90 1.90 41.18 3.41
4172 4344 3.348119 TGAGTGTAGGAGTAGCTCACTG 58.652 50.000 6.70 0.00 39.08 3.66
4173 4345 2.096248 AGTGTAGGAGTAGCTCACTGC 58.904 52.381 1.50 4.40 45.52 4.40
4214 4387 1.687563 CACGGAAACTTTTGGTCCCT 58.312 50.000 0.00 0.00 0.00 4.20
4215 4388 1.607148 CACGGAAACTTTTGGTCCCTC 59.393 52.381 0.00 0.00 0.00 4.30
4216 4389 1.244816 CGGAAACTTTTGGTCCCTCC 58.755 55.000 0.00 0.00 0.00 4.30
4217 4390 1.629043 GGAAACTTTTGGTCCCTCCC 58.371 55.000 0.00 0.00 34.77 4.30
4231 4404 1.066645 CCCTCCCAGTACGTTTACACC 60.067 57.143 0.00 0.00 0.00 4.16
4239 4412 4.325472 CCAGTACGTTTACACCTCGAAATC 59.675 45.833 0.00 0.00 0.00 2.17
4265 4438 9.378551 CAAGCTGTATACTAGGATGTTTTTACA 57.621 33.333 4.17 0.00 0.00 2.41
4328 4538 3.006430 GGTGTGTAGTTTTGAAATGGGGG 59.994 47.826 0.00 0.00 0.00 5.40
4357 4567 1.224592 CATGGCGGAGGGCTACTTT 59.775 57.895 0.00 0.00 42.94 2.66
4358 4568 1.097547 CATGGCGGAGGGCTACTTTG 61.098 60.000 0.00 0.00 42.94 2.77
4359 4569 1.271840 ATGGCGGAGGGCTACTTTGA 61.272 55.000 0.00 0.00 42.94 2.69
4360 4570 1.153349 GGCGGAGGGCTACTTTGAG 60.153 63.158 0.00 0.00 42.94 3.02
4361 4571 1.815840 GCGGAGGGCTACTTTGAGC 60.816 63.158 0.00 0.00 42.05 4.26
4362 4572 1.519455 CGGAGGGCTACTTTGAGCG 60.519 63.158 0.00 0.00 43.83 5.03
4365 4575 3.195698 GGGCTACTTTGAGCGCCG 61.196 66.667 2.29 0.00 46.70 6.46
4366 4576 2.125673 GGCTACTTTGAGCGCCGA 60.126 61.111 2.29 0.00 43.83 5.54
4367 4577 2.453638 GGCTACTTTGAGCGCCGAC 61.454 63.158 2.29 0.00 43.83 4.79
4368 4578 2.453638 GCTACTTTGAGCGCCGACC 61.454 63.158 2.29 0.00 31.57 4.79
4369 4579 1.810030 CTACTTTGAGCGCCGACCC 60.810 63.158 2.29 0.00 0.00 4.46
4370 4580 3.636313 TACTTTGAGCGCCGACCCG 62.636 63.158 2.29 0.00 0.00 5.28
4371 4581 4.735132 CTTTGAGCGCCGACCCGA 62.735 66.667 2.29 0.00 0.00 5.14
4497 4707 3.506096 CACATCAGCAGCGGCCAG 61.506 66.667 4.82 0.00 42.56 4.85
4587 4797 3.694566 ACTCGAGCACCCAATTATTTTCC 59.305 43.478 13.61 0.00 0.00 3.13
4594 4804 0.249280 CCAATTATTTTCCCGCGGGC 60.249 55.000 39.89 0.00 34.68 6.13
4680 4905 3.240606 CTGGCCAACACAAGTCGCG 62.241 63.158 7.01 0.00 0.00 5.87
4697 4922 3.124921 GAACCCGACACGGCCATG 61.125 66.667 2.24 0.00 46.86 3.66
4752 4977 2.435410 TGCAGTGCATGAGCCGAG 60.435 61.111 15.37 0.00 41.13 4.63
4753 4978 2.125391 GCAGTGCATGAGCCGAGA 60.125 61.111 11.09 0.00 41.13 4.04
4754 4979 2.459442 GCAGTGCATGAGCCGAGAC 61.459 63.158 11.09 0.00 41.13 3.36
4778 5059 4.293648 TGTACCACAGCGCGCAGT 62.294 61.111 35.10 29.72 0.00 4.40
4848 5150 3.773404 CGGGCATGGCAAAAGGGG 61.773 66.667 22.06 0.00 0.00 4.79
4859 5161 2.484770 GGCAAAAGGGGGTTTGAGTTTC 60.485 50.000 1.96 0.00 40.29 2.78
4917 5219 5.396484 TGACTCGGTAATTTTCTCGTAGTG 58.604 41.667 0.00 0.00 0.00 2.74
4921 5223 5.883661 TCGGTAATTTTCTCGTAGTGGTAG 58.116 41.667 0.00 0.00 0.00 3.18
4922 5224 5.415701 TCGGTAATTTTCTCGTAGTGGTAGT 59.584 40.000 0.00 0.00 0.00 2.73
4924 5226 6.688813 CGGTAATTTTCTCGTAGTGGTAGTAC 59.311 42.308 0.00 0.00 0.00 2.73
4925 5227 6.688813 GGTAATTTTCTCGTAGTGGTAGTACG 59.311 42.308 9.32 9.32 45.95 3.67
4952 5254 1.152247 TCAGCCTGGTGAGGTCTGT 60.152 57.895 0.00 0.00 42.15 3.41
4971 5273 5.974676 TCTGTAGCAGTAGGATACGGACCT 61.975 50.000 0.00 0.00 46.07 3.85
4972 5274 7.713147 TCTGTAGCAGTAGGATACGGACCTC 62.713 52.000 0.00 0.00 46.07 3.85
5052 5391 2.362717 CCCTTTAGGTCAGGATCGACTC 59.637 54.545 0.00 0.00 36.12 3.36
5099 5438 3.223946 TGGGACACACTCACTCACT 57.776 52.632 0.00 0.00 0.00 3.41
5100 5439 1.040646 TGGGACACACTCACTCACTC 58.959 55.000 0.00 0.00 0.00 3.51
5101 5440 0.318762 GGGACACACTCACTCACTCC 59.681 60.000 0.00 0.00 0.00 3.85
5102 5441 0.039074 GGACACACTCACTCACTCCG 60.039 60.000 0.00 0.00 0.00 4.63
5103 5442 0.039074 GACACACTCACTCACTCCGG 60.039 60.000 0.00 0.00 0.00 5.14
5104 5443 0.755698 ACACACTCACTCACTCCGGT 60.756 55.000 0.00 0.00 0.00 5.28
5105 5444 1.244816 CACACTCACTCACTCCGGTA 58.755 55.000 0.00 0.00 0.00 4.02
5136 5476 1.448922 CGTCATCCTCCTCCTCCGTC 61.449 65.000 0.00 0.00 0.00 4.79
5137 5477 1.110518 GTCATCCTCCTCCTCCGTCC 61.111 65.000 0.00 0.00 0.00 4.79
5138 5478 1.834822 CATCCTCCTCCTCCGTCCC 60.835 68.421 0.00 0.00 0.00 4.46
5205 5545 4.377708 GCCAAAGCCAAAGCCGGG 62.378 66.667 2.18 0.00 41.25 5.73
5322 5681 4.252878 CCTCTCTCTCTGCTTTTCCTTTC 58.747 47.826 0.00 0.00 0.00 2.62
5387 5746 2.237143 TGGGCTGGATTAACTGACAGAG 59.763 50.000 10.08 0.00 32.86 3.35
5442 5801 2.224090 TGGATTTGACGAACTTGGTCGA 60.224 45.455 15.26 0.00 43.86 4.20
5546 5905 1.201812 CGCAGAATGTTGTACGCACTC 60.202 52.381 0.00 0.00 39.31 3.51
5597 5957 7.959651 CAGTTTCTGTACTATTCAAATCAGCAC 59.040 37.037 0.00 0.00 0.00 4.40
5630 5990 0.810648 CGCTTTTCCTAGCATGCCAA 59.189 50.000 15.66 1.50 41.28 4.52
5635 5995 0.462581 TTCCTAGCATGCCAAGCTCG 60.463 55.000 15.66 0.00 42.32 5.03
5700 6060 2.474359 CGCGCTTAGATTTGAGATCAGG 59.526 50.000 5.56 0.00 0.00 3.86
5735 6095 9.809096 ATTATTATCTTATACTGATCAGTGCGG 57.191 33.333 33.76 21.08 42.52 5.69
5772 6508 3.087781 ACACTCCTCCTAGGTTTACGTC 58.912 50.000 9.08 0.00 36.53 4.34
5790 6526 7.823149 TTACGTCCATAGCTTTCTCTTTTAC 57.177 36.000 0.00 0.00 0.00 2.01
5890 6968 1.141019 CAGGCATGCTGATTGTGGC 59.859 57.895 18.92 0.00 38.56 5.01
6340 7573 2.496899 AGTCCGGCAGAACAAATCAT 57.503 45.000 0.00 0.00 0.00 2.45
6390 7623 0.107703 CTCAGGGCCGAATTACAGCA 60.108 55.000 0.00 0.00 0.00 4.41
6391 7624 0.392461 TCAGGGCCGAATTACAGCAC 60.392 55.000 0.00 0.00 0.00 4.40
6392 7625 0.392998 CAGGGCCGAATTACAGCACT 60.393 55.000 0.00 0.00 42.18 4.40
6423 7656 2.576191 TGGGGCTAGCATTCTACAGTTT 59.424 45.455 18.24 0.00 0.00 2.66
6496 7729 7.663043 AACATGTAACTTTGTTTTTCCCCTA 57.337 32.000 0.00 0.00 32.28 3.53
6497 7730 7.663043 ACATGTAACTTTGTTTTTCCCCTAA 57.337 32.000 0.00 0.00 0.00 2.69
6498 7731 8.257602 ACATGTAACTTTGTTTTTCCCCTAAT 57.742 30.769 0.00 0.00 0.00 1.73
6572 7805 5.784177 AGGGTTTGATCATATGCTACTACG 58.216 41.667 0.00 0.00 0.00 3.51
6573 7806 5.304614 AGGGTTTGATCATATGCTACTACGT 59.695 40.000 0.00 0.00 0.00 3.57
6574 7807 6.492429 AGGGTTTGATCATATGCTACTACGTA 59.508 38.462 0.00 0.00 0.00 3.57
6575 7808 6.585322 GGGTTTGATCATATGCTACTACGTAC 59.415 42.308 0.00 0.00 0.00 3.67
6576 7809 6.585322 GGTTTGATCATATGCTACTACGTACC 59.415 42.308 0.00 0.00 0.00 3.34
6577 7810 6.887626 TTGATCATATGCTACTACGTACCA 57.112 37.500 0.00 0.00 0.00 3.25
6578 7811 7.462571 TTGATCATATGCTACTACGTACCAT 57.537 36.000 0.00 0.00 0.00 3.55
6604 7837 1.047801 GGGGTTTGTGCTGTCCAATT 58.952 50.000 0.00 0.00 0.00 2.32
6699 7932 8.088981 TCATCTCCTTTACACTAGTTCTTGTTC 58.911 37.037 0.00 0.00 0.00 3.18
6718 7951 6.726258 TGTTCATGCTGAAATGTGTACTAG 57.274 37.500 0.00 0.00 38.22 2.57
6906 8139 3.505386 TCCCAAAGCTTAAAGCATCCAA 58.495 40.909 0.00 0.00 45.56 3.53
6921 8154 5.522641 AGCATCCAAATAGGGACTTGAATT 58.477 37.500 0.00 0.00 40.44 2.17
6924 8157 3.694072 TCCAAATAGGGACTTGAATTGCG 59.306 43.478 0.00 0.00 41.75 4.85
6945 8178 3.882888 CGCAGCTTTATGGGAATAAAGGA 59.117 43.478 16.12 0.00 41.82 3.36
6959 8192 7.563556 TGGGAATAAAGGAGGGTCAAAAATATC 59.436 37.037 0.00 0.00 0.00 1.63
7029 8262 1.550976 GGGCTTACAGTGTCAGTAGCT 59.449 52.381 0.00 0.00 0.00 3.32
7030 8263 2.028020 GGGCTTACAGTGTCAGTAGCTT 60.028 50.000 0.00 0.00 0.00 3.74
7048 8281 3.503748 AGCTTGAAGTCATGCAAGTAACC 59.496 43.478 18.17 0.00 45.90 2.85
7068 8301 6.872628 AACCATTGCACTGATCACATATAG 57.127 37.500 5.49 0.00 0.00 1.31
7101 8334 4.265893 TCAGAACACAGTACAAGGCAAAA 58.734 39.130 0.00 0.00 0.00 2.44
7194 8427 5.411083 GCTGCATTTAGCTAAGAAGTACC 57.589 43.478 6.24 0.00 45.94 3.34
7254 8487 5.768317 TGTTTGTCCATTTAAAGTAGCAGC 58.232 37.500 0.00 0.00 0.00 5.25
7256 8489 6.183360 TGTTTGTCCATTTAAAGTAGCAGCAA 60.183 34.615 0.00 0.00 0.00 3.91
7277 8510 6.150809 AGCAACAGTAGGAGTAGTAGTTGTAC 59.849 42.308 0.00 0.00 37.69 2.90
7278 8511 6.072286 GCAACAGTAGGAGTAGTAGTTGTACA 60.072 42.308 0.00 0.00 37.69 2.90
7371 8689 5.269991 TCCTGGAGTATAGTGCAAGTTACT 58.730 41.667 3.18 0.00 0.00 2.24
7377 8695 7.470289 GAGTATAGTGCAAGTTACTCCAATG 57.530 40.000 15.37 0.00 36.25 2.82
7383 8701 2.094675 CAAGTTACTCCAATGCCCCAG 58.905 52.381 0.00 0.00 0.00 4.45
7386 8704 2.238898 AGTTACTCCAATGCCCCAGTAC 59.761 50.000 0.00 0.00 0.00 2.73
7464 8782 5.039920 AGTGCAATATCTGATGTGGCTTA 57.960 39.130 13.90 0.00 0.00 3.09
7476 8794 2.862541 TGTGGCTTAACTTGCACAGAT 58.137 42.857 0.00 0.00 0.00 2.90
7477 8795 4.014569 TGTGGCTTAACTTGCACAGATA 57.985 40.909 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.863454 CATGGAGAGACTGCATAACGC 59.137 52.381 5.54 0.00 40.43 4.84
1 2 3.119291 GTCATGGAGAGACTGCATAACG 58.881 50.000 5.54 0.00 40.43 3.18
2 3 4.399004 AGTCATGGAGAGACTGCATAAC 57.601 45.455 5.54 2.44 44.23 1.89
3 4 5.204292 AGTAGTCATGGAGAGACTGCATAA 58.796 41.667 12.60 0.00 46.81 1.90
4 5 4.797743 AGTAGTCATGGAGAGACTGCATA 58.202 43.478 12.60 0.00 46.81 3.14
5 6 3.641046 AGTAGTCATGGAGAGACTGCAT 58.359 45.455 12.60 0.00 46.81 3.96
6 7 3.093057 AGTAGTCATGGAGAGACTGCA 57.907 47.619 12.60 0.00 46.81 4.41
7 8 3.194542 ACAAGTAGTCATGGAGAGACTGC 59.805 47.826 6.13 4.87 45.38 4.40
8 9 6.707440 ATACAAGTAGTCATGGAGAGACTG 57.293 41.667 6.13 0.00 45.38 3.51
10 11 6.096987 TGGAATACAAGTAGTCATGGAGAGAC 59.903 42.308 9.51 0.00 32.33 3.36
11 12 6.194967 TGGAATACAAGTAGTCATGGAGAGA 58.805 40.000 9.51 0.00 32.33 3.10
12 13 6.471233 TGGAATACAAGTAGTCATGGAGAG 57.529 41.667 9.51 0.00 32.33 3.20
13 14 6.440647 AGTTGGAATACAAGTAGTCATGGAGA 59.559 38.462 9.51 0.00 40.89 3.71
14 15 6.644347 AGTTGGAATACAAGTAGTCATGGAG 58.356 40.000 9.51 0.00 40.89 3.86
15 16 6.620877 AGTTGGAATACAAGTAGTCATGGA 57.379 37.500 9.51 0.00 40.89 3.41
16 17 7.687941 AAAGTTGGAATACAAGTAGTCATGG 57.312 36.000 9.51 0.00 41.82 3.66
42 43 8.536175 ACAAGTCCAAGATCCAAAAACTAAAAA 58.464 29.630 0.00 0.00 0.00 1.94
43 44 8.073467 ACAAGTCCAAGATCCAAAAACTAAAA 57.927 30.769 0.00 0.00 0.00 1.52
44 45 7.654022 ACAAGTCCAAGATCCAAAAACTAAA 57.346 32.000 0.00 0.00 0.00 1.85
45 46 7.654022 AACAAGTCCAAGATCCAAAAACTAA 57.346 32.000 0.00 0.00 0.00 2.24
46 47 7.417342 CCAAACAAGTCCAAGATCCAAAAACTA 60.417 37.037 0.00 0.00 0.00 2.24
47 48 6.340522 CAAACAAGTCCAAGATCCAAAAACT 58.659 36.000 0.00 0.00 0.00 2.66
48 49 5.523552 CCAAACAAGTCCAAGATCCAAAAAC 59.476 40.000 0.00 0.00 0.00 2.43
49 50 5.669477 CCAAACAAGTCCAAGATCCAAAAA 58.331 37.500 0.00 0.00 0.00 1.94
50 51 4.442753 GCCAAACAAGTCCAAGATCCAAAA 60.443 41.667 0.00 0.00 0.00 2.44
51 52 3.069443 GCCAAACAAGTCCAAGATCCAAA 59.931 43.478 0.00 0.00 0.00 3.28
52 53 2.627699 GCCAAACAAGTCCAAGATCCAA 59.372 45.455 0.00 0.00 0.00 3.53
53 54 2.158475 AGCCAAACAAGTCCAAGATCCA 60.158 45.455 0.00 0.00 0.00 3.41
54 55 2.229784 CAGCCAAACAAGTCCAAGATCC 59.770 50.000 0.00 0.00 0.00 3.36
55 56 2.887152 ACAGCCAAACAAGTCCAAGATC 59.113 45.455 0.00 0.00 0.00 2.75
56 57 2.624838 CACAGCCAAACAAGTCCAAGAT 59.375 45.455 0.00 0.00 0.00 2.40
57 58 2.023673 CACAGCCAAACAAGTCCAAGA 58.976 47.619 0.00 0.00 0.00 3.02
58 59 1.750778 ACACAGCCAAACAAGTCCAAG 59.249 47.619 0.00 0.00 0.00 3.61
59 60 1.476085 CACACAGCCAAACAAGTCCAA 59.524 47.619 0.00 0.00 0.00 3.53
60 61 1.102154 CACACAGCCAAACAAGTCCA 58.898 50.000 0.00 0.00 0.00 4.02
61 62 0.249031 GCACACAGCCAAACAAGTCC 60.249 55.000 0.00 0.00 37.23 3.85
62 63 0.455410 TGCACACAGCCAAACAAGTC 59.545 50.000 0.00 0.00 44.83 3.01
63 64 1.067516 GATGCACACAGCCAAACAAGT 59.932 47.619 0.00 0.00 44.83 3.16
64 65 1.338973 AGATGCACACAGCCAAACAAG 59.661 47.619 0.00 0.00 44.83 3.16
65 66 1.337703 GAGATGCACACAGCCAAACAA 59.662 47.619 0.00 0.00 44.83 2.83
66 67 0.953727 GAGATGCACACAGCCAAACA 59.046 50.000 0.00 0.00 44.83 2.83
67 68 0.110056 CGAGATGCACACAGCCAAAC 60.110 55.000 0.00 0.00 44.83 2.93
68 69 1.236616 CCGAGATGCACACAGCCAAA 61.237 55.000 0.00 0.00 44.83 3.28
69 70 1.672030 CCGAGATGCACACAGCCAA 60.672 57.895 0.00 0.00 44.83 4.52
70 71 2.046988 CCGAGATGCACACAGCCA 60.047 61.111 0.00 0.00 44.83 4.75
71 72 0.391130 TAACCGAGATGCACACAGCC 60.391 55.000 0.00 0.00 44.83 4.85
72 73 0.721718 GTAACCGAGATGCACACAGC 59.278 55.000 0.00 0.00 45.96 4.40
73 74 1.726791 GTGTAACCGAGATGCACACAG 59.273 52.381 0.00 0.00 39.39 3.66
74 75 1.069358 TGTGTAACCGAGATGCACACA 59.931 47.619 1.95 1.95 45.20 3.72
75 76 1.726791 CTGTGTAACCGAGATGCACAC 59.273 52.381 0.00 0.00 39.89 3.82
76 77 1.616374 TCTGTGTAACCGAGATGCACA 59.384 47.619 0.00 0.00 38.23 4.57
77 78 2.363788 TCTGTGTAACCGAGATGCAC 57.636 50.000 0.00 0.00 34.36 4.57
83 84 1.153823 CGGCCTCTGTGTAACCGAG 60.154 63.158 0.00 0.00 46.25 4.63
84 85 2.642254 CCGGCCTCTGTGTAACCGA 61.642 63.158 0.00 0.00 46.71 4.69
85 86 2.125673 CCGGCCTCTGTGTAACCG 60.126 66.667 0.00 0.00 43.44 4.44
86 87 2.267961 CCCGGCCTCTGTGTAACC 59.732 66.667 0.00 0.00 34.36 2.85
87 88 1.375523 CACCCGGCCTCTGTGTAAC 60.376 63.158 0.00 0.00 37.35 2.50
88 89 0.542467 TACACCCGGCCTCTGTGTAA 60.542 55.000 20.23 9.15 41.19 2.41
89 90 0.542467 TTACACCCGGCCTCTGTGTA 60.542 55.000 19.19 19.19 42.75 2.90
90 91 1.198759 ATTACACCCGGCCTCTGTGT 61.199 55.000 20.81 20.81 44.76 3.72
91 92 0.744414 CATTACACCCGGCCTCTGTG 60.744 60.000 12.88 12.88 36.11 3.66
92 93 1.602237 CATTACACCCGGCCTCTGT 59.398 57.895 0.00 1.25 0.00 3.41
93 94 1.819632 GCATTACACCCGGCCTCTG 60.820 63.158 0.00 0.00 0.00 3.35
94 95 1.562672 AAGCATTACACCCGGCCTCT 61.563 55.000 0.00 0.00 0.00 3.69
95 96 0.179468 TAAGCATTACACCCGGCCTC 59.821 55.000 0.00 0.00 0.00 4.70
96 97 0.621609 TTAAGCATTACACCCGGCCT 59.378 50.000 0.00 0.00 0.00 5.19
97 98 1.133598 GTTTAAGCATTACACCCGGCC 59.866 52.381 0.00 0.00 0.00 6.13
98 99 1.133598 GGTTTAAGCATTACACCCGGC 59.866 52.381 0.00 0.00 43.82 6.13
112 113 9.430623 GGATGCTTTATTGCTTAAAAGGTTTAA 57.569 29.630 7.16 0.00 34.07 1.52
113 114 8.811994 AGGATGCTTTATTGCTTAAAAGGTTTA 58.188 29.630 7.16 0.00 34.07 2.01
114 115 7.679783 AGGATGCTTTATTGCTTAAAAGGTTT 58.320 30.769 7.16 0.00 34.07 3.27
115 116 7.244886 AGGATGCTTTATTGCTTAAAAGGTT 57.755 32.000 7.16 0.00 34.07 3.50
116 117 6.857437 AGGATGCTTTATTGCTTAAAAGGT 57.143 33.333 7.16 0.00 34.07 3.50
117 118 9.822185 ATAAAGGATGCTTTATTGCTTAAAAGG 57.178 29.630 22.40 0.00 36.45 3.11
119 120 9.515020 CGATAAAGGATGCTTTATTGCTTAAAA 57.485 29.630 26.87 4.17 38.98 1.52
120 121 8.898761 TCGATAAAGGATGCTTTATTGCTTAAA 58.101 29.630 29.12 16.58 38.98 1.52
121 122 8.445275 TCGATAAAGGATGCTTTATTGCTTAA 57.555 30.769 29.12 16.85 38.98 1.85
122 123 8.445275 TTCGATAAAGGATGCTTTATTGCTTA 57.555 30.769 29.12 19.08 38.98 3.09
123 124 6.942532 TCGATAAAGGATGCTTTATTGCTT 57.057 33.333 29.12 13.55 38.98 3.91
124 125 6.942532 TTCGATAAAGGATGCTTTATTGCT 57.057 33.333 29.12 13.86 38.98 3.91
125 126 7.985634 TTTTCGATAAAGGATGCTTTATTGC 57.014 32.000 29.12 18.95 38.98 3.56
127 128 9.533253 CCATTTTTCGATAAAGGATGCTTTATT 57.467 29.630 26.87 14.66 38.98 1.40
128 129 8.695456 ACCATTTTTCGATAAAGGATGCTTTAT 58.305 29.630 26.60 26.60 40.84 1.40
129 130 7.973388 CACCATTTTTCGATAAAGGATGCTTTA 59.027 33.333 20.02 20.02 33.92 1.85
130 131 6.813152 CACCATTTTTCGATAAAGGATGCTTT 59.187 34.615 16.85 16.85 0.00 3.51
131 132 6.332630 CACCATTTTTCGATAAAGGATGCTT 58.667 36.000 13.41 0.00 0.00 3.91
132 133 5.163519 CCACCATTTTTCGATAAAGGATGCT 60.164 40.000 13.41 0.00 0.00 3.79
133 134 5.043248 CCACCATTTTTCGATAAAGGATGC 58.957 41.667 13.41 0.00 0.00 3.91
134 135 6.449635 TCCACCATTTTTCGATAAAGGATG 57.550 37.500 13.41 7.37 0.00 3.51
135 136 5.067805 GCTCCACCATTTTTCGATAAAGGAT 59.932 40.000 13.41 0.00 0.00 3.24
136 137 4.398044 GCTCCACCATTTTTCGATAAAGGA 59.602 41.667 13.41 9.76 0.00 3.36
137 138 4.440112 GGCTCCACCATTTTTCGATAAAGG 60.440 45.833 7.13 6.60 38.86 3.11
138 139 4.157656 TGGCTCCACCATTTTTCGATAAAG 59.842 41.667 7.13 0.00 46.36 1.85
139 140 4.082845 TGGCTCCACCATTTTTCGATAAA 58.917 39.130 3.47 3.47 46.36 1.40
140 141 3.691575 TGGCTCCACCATTTTTCGATAA 58.308 40.909 0.00 0.00 46.36 1.75
141 142 3.358111 TGGCTCCACCATTTTTCGATA 57.642 42.857 0.00 0.00 46.36 2.92
142 143 2.214376 TGGCTCCACCATTTTTCGAT 57.786 45.000 0.00 0.00 46.36 3.59
143 144 3.735704 TGGCTCCACCATTTTTCGA 57.264 47.368 0.00 0.00 46.36 3.71
152 153 0.614812 AAATGGCAAATGGCTCCACC 59.385 50.000 8.50 0.00 44.01 4.61
153 154 1.551883 AGAAATGGCAAATGGCTCCAC 59.448 47.619 8.50 0.00 44.01 4.02
154 155 1.941377 AGAAATGGCAAATGGCTCCA 58.059 45.000 8.50 0.00 44.01 3.86
155 156 5.072741 TCTATAGAAATGGCAAATGGCTCC 58.927 41.667 0.00 0.00 44.01 4.70
156 157 6.639632 TTCTATAGAAATGGCAAATGGCTC 57.360 37.500 12.87 0.00 44.01 4.70
180 181 9.976511 CATCCTGATAATTGCAACTTCAATAAT 57.023 29.630 0.00 0.00 35.77 1.28
181 182 8.415553 CCATCCTGATAATTGCAACTTCAATAA 58.584 33.333 0.00 0.00 35.77 1.40
182 183 7.560991 ACCATCCTGATAATTGCAACTTCAATA 59.439 33.333 0.00 0.00 35.77 1.90
183 184 6.381994 ACCATCCTGATAATTGCAACTTCAAT 59.618 34.615 0.00 0.00 38.23 2.57
184 185 5.716228 ACCATCCTGATAATTGCAACTTCAA 59.284 36.000 0.00 0.00 0.00 2.69
185 186 5.263599 ACCATCCTGATAATTGCAACTTCA 58.736 37.500 0.00 4.43 0.00 3.02
186 187 5.841957 ACCATCCTGATAATTGCAACTTC 57.158 39.130 0.00 0.00 0.00 3.01
187 188 6.610075 AAACCATCCTGATAATTGCAACTT 57.390 33.333 0.00 0.05 0.00 2.66
188 189 7.118723 TCTAAACCATCCTGATAATTGCAACT 58.881 34.615 0.00 0.00 0.00 3.16
189 190 7.333528 TCTAAACCATCCTGATAATTGCAAC 57.666 36.000 0.00 0.00 0.00 4.17
190 191 8.537728 AATCTAAACCATCCTGATAATTGCAA 57.462 30.769 0.00 0.00 0.00 4.08
191 192 8.537728 AAATCTAAACCATCCTGATAATTGCA 57.462 30.769 0.00 0.00 0.00 4.08
192 193 8.632679 TGAAATCTAAACCATCCTGATAATTGC 58.367 33.333 0.00 0.00 0.00 3.56
193 194 9.956720 GTGAAATCTAAACCATCCTGATAATTG 57.043 33.333 0.00 0.00 0.00 2.32
194 195 9.136323 GGTGAAATCTAAACCATCCTGATAATT 57.864 33.333 0.00 0.00 33.94 1.40
195 196 7.725844 GGGTGAAATCTAAACCATCCTGATAAT 59.274 37.037 0.00 0.00 35.56 1.28
196 197 7.060421 GGGTGAAATCTAAACCATCCTGATAA 58.940 38.462 0.00 0.00 35.56 1.75
197 198 6.389869 AGGGTGAAATCTAAACCATCCTGATA 59.610 38.462 0.00 0.00 38.61 2.15
198 199 5.194537 AGGGTGAAATCTAAACCATCCTGAT 59.805 40.000 0.00 0.00 38.61 2.90
199 200 4.540099 AGGGTGAAATCTAAACCATCCTGA 59.460 41.667 0.00 0.00 38.61 3.86
200 201 4.860022 AGGGTGAAATCTAAACCATCCTG 58.140 43.478 0.00 0.00 38.61 3.86
201 202 4.540099 TGAGGGTGAAATCTAAACCATCCT 59.460 41.667 3.56 0.00 42.65 3.24
202 203 4.855340 TGAGGGTGAAATCTAAACCATCC 58.145 43.478 3.56 0.00 42.65 3.51
203 204 8.571336 CATTATGAGGGTGAAATCTAAACCATC 58.429 37.037 0.00 0.00 43.40 3.51
204 205 7.014615 GCATTATGAGGGTGAAATCTAAACCAT 59.985 37.037 0.00 0.00 35.56 3.55
205 206 6.321181 GCATTATGAGGGTGAAATCTAAACCA 59.679 38.462 0.00 0.00 35.56 3.67
206 207 6.239036 GGCATTATGAGGGTGAAATCTAAACC 60.239 42.308 0.00 0.00 0.00 3.27
207 208 6.547510 AGGCATTATGAGGGTGAAATCTAAAC 59.452 38.462 0.00 0.00 0.00 2.01
208 209 6.672593 AGGCATTATGAGGGTGAAATCTAAA 58.327 36.000 0.00 0.00 0.00 1.85
209 210 6.266131 AGGCATTATGAGGGTGAAATCTAA 57.734 37.500 0.00 0.00 0.00 2.10
210 211 5.912149 AGGCATTATGAGGGTGAAATCTA 57.088 39.130 0.00 0.00 0.00 1.98
211 212 4.803329 AGGCATTATGAGGGTGAAATCT 57.197 40.909 0.00 0.00 0.00 2.40
212 213 5.006386 CCTAGGCATTATGAGGGTGAAATC 58.994 45.833 0.00 0.00 0.00 2.17
213 214 4.202609 CCCTAGGCATTATGAGGGTGAAAT 60.203 45.833 2.05 0.00 43.32 2.17
214 215 3.138283 CCCTAGGCATTATGAGGGTGAAA 59.862 47.826 2.05 0.00 43.32 2.69
215 216 2.711009 CCCTAGGCATTATGAGGGTGAA 59.289 50.000 2.05 0.00 43.32 3.18
229 230 2.873094 ACACCTACAAAACCCTAGGC 57.127 50.000 2.05 0.00 33.89 3.93
250 251 4.407621 CCCCAAAACCCACTCTTAAAGTTT 59.592 41.667 0.00 0.00 35.45 2.66
265 266 2.546373 GCCGAAACTTAACCCCCAAAAC 60.546 50.000 0.00 0.00 0.00 2.43
283 284 4.946784 AGCAACTCTTAACTAATTGCCG 57.053 40.909 3.77 0.00 45.36 5.69
290 291 7.556996 TGGTTTTTGGTAAGCAACTCTTAACTA 59.443 33.333 2.04 0.00 43.71 2.24
306 307 2.029470 CGTATGCCATGTGGTTTTTGGT 60.029 45.455 0.35 0.00 37.57 3.67
320 321 3.099267 ACTCAGCTTACATCGTATGCC 57.901 47.619 8.03 0.00 0.00 4.40
322 323 6.529477 CCATGATACTCAGCTTACATCGTATG 59.471 42.308 0.00 0.00 0.00 2.39
336 337 5.512942 TTTGGGTTCTTCCATGATACTCA 57.487 39.130 0.00 0.00 36.58 3.41
337 338 6.834168 TTTTTGGGTTCTTCCATGATACTC 57.166 37.500 0.00 0.00 36.58 2.59
420 421 5.348164 TCCAGTGTGTTCGATATGTGTATG 58.652 41.667 0.00 0.00 0.00 2.39
431 432 3.713288 TCAAACTACTCCAGTGTGTTCG 58.287 45.455 0.00 0.00 42.42 3.95
433 434 4.275936 GCAATCAAACTACTCCAGTGTGTT 59.724 41.667 0.00 0.00 42.42 3.32
719 729 3.372566 GGTCCTCTTCATCTCTCTCTCCA 60.373 52.174 0.00 0.00 0.00 3.86
720 730 3.222603 GGTCCTCTTCATCTCTCTCTCC 58.777 54.545 0.00 0.00 0.00 3.71
728 742 3.373001 CCTCTCTCTGGTCCTCTTCATCT 60.373 52.174 0.00 0.00 0.00 2.90
733 747 1.287739 CCTCCTCTCTCTGGTCCTCTT 59.712 57.143 0.00 0.00 0.00 2.85
735 749 0.923358 TCCTCCTCTCTCTGGTCCTC 59.077 60.000 0.00 0.00 0.00 3.71
749 763 4.282496 TGTGTTCTATCTTCTCCTCCTCC 58.718 47.826 0.00 0.00 0.00 4.30
750 764 5.197451 TCTGTGTTCTATCTTCTCCTCCTC 58.803 45.833 0.00 0.00 0.00 3.71
751 765 5.044476 TCTCTGTGTTCTATCTTCTCCTCCT 60.044 44.000 0.00 0.00 0.00 3.69
752 766 5.067283 GTCTCTGTGTTCTATCTTCTCCTCC 59.933 48.000 0.00 0.00 0.00 4.30
804 818 1.764571 TTGTGGGAGAAGGGTGTCCG 61.765 60.000 0.00 0.00 38.12 4.79
858 872 4.104086 AGGGGAATATGTTCTCTGTGTGA 58.896 43.478 1.78 0.00 35.09 3.58
918 932 4.171754 GAGAAGCTTCACATGAAAATGGC 58.828 43.478 27.57 0.00 33.07 4.40
1022 1036 5.020132 AGTGAGCTTATAGACACTTGGAGT 58.980 41.667 0.00 0.00 40.03 3.85
1031 1045 5.171476 TGCTGTTTCAGTGAGCTTATAGAC 58.829 41.667 4.02 0.00 33.43 2.59
1113 1127 1.737838 TCTGGCCTACAATTCTTGCG 58.262 50.000 3.32 0.00 0.00 4.85
1143 1157 2.751806 GGAGAGCAAGACAAAAGGATGG 59.248 50.000 0.00 0.00 0.00 3.51
1154 1168 6.302269 AGAAGAAAAATCAAGGAGAGCAAGA 58.698 36.000 0.00 0.00 0.00 3.02
1167 1181 7.171678 CCGATGGATAGTGGTAGAAGAAAAATC 59.828 40.741 0.00 0.00 0.00 2.17
1168 1182 6.992715 CCGATGGATAGTGGTAGAAGAAAAAT 59.007 38.462 0.00 0.00 0.00 1.82
1170 1184 5.424252 ACCGATGGATAGTGGTAGAAGAAAA 59.576 40.000 0.00 0.00 31.60 2.29
1171 1185 4.960469 ACCGATGGATAGTGGTAGAAGAAA 59.040 41.667 0.00 0.00 31.60 2.52
1190 1204 1.607148 CATAGCCATCGACACTACCGA 59.393 52.381 0.00 0.00 40.53 4.69
1193 1207 2.361119 TGTCCATAGCCATCGACACTAC 59.639 50.000 0.00 0.00 28.67 2.73
1196 1210 1.571919 GTGTCCATAGCCATCGACAC 58.428 55.000 7.20 7.20 43.14 3.67
1201 1215 1.956170 CGCCGTGTCCATAGCCATC 60.956 63.158 0.00 0.00 0.00 3.51
1202 1216 2.108976 CGCCGTGTCCATAGCCAT 59.891 61.111 0.00 0.00 0.00 4.40
3828 3968 4.027540 GCGATAAGCGACTAGAGACAAAAC 60.028 45.833 0.00 0.00 44.57 2.43
3857 3997 4.864334 CCCCTCATCGGCAGGCAC 62.864 72.222 0.00 0.00 0.00 5.01
3863 4003 0.533755 CTGATTGACCCCTCATCGGC 60.534 60.000 0.00 0.00 0.00 5.54
3864 4004 1.123077 TCTGATTGACCCCTCATCGG 58.877 55.000 0.00 0.00 0.00 4.18
3865 4005 3.482156 AATCTGATTGACCCCTCATCG 57.518 47.619 1.31 0.00 0.00 3.84
3866 4006 3.887716 CCAAATCTGATTGACCCCTCATC 59.112 47.826 3.22 0.00 31.84 2.92
3963 4123 4.452733 CGGAAGAGCGGGTCCCAC 62.453 72.222 9.12 0.00 0.00 4.61
4044 4204 6.788930 GTCAATCGTACGTGAAGGTTTTTAAG 59.211 38.462 16.05 0.00 0.00 1.85
4051 4211 1.614903 TGGTCAATCGTACGTGAAGGT 59.385 47.619 16.05 0.00 0.00 3.50
4099 4263 8.071368 GCAGACAATGAGACATAGTAGTACTAC 58.929 40.741 23.03 23.03 32.84 2.73
4160 4332 1.135141 CAGTGAGGCAGTGAGCTACTC 60.135 57.143 0.00 0.00 44.79 2.59
4161 4333 0.894141 CAGTGAGGCAGTGAGCTACT 59.106 55.000 0.00 0.00 44.79 2.57
4162 4334 0.605589 ACAGTGAGGCAGTGAGCTAC 59.394 55.000 9.07 0.00 44.79 3.58
4163 4335 1.342074 AACAGTGAGGCAGTGAGCTA 58.658 50.000 9.07 0.00 44.79 3.32
4164 4336 0.471617 AAACAGTGAGGCAGTGAGCT 59.528 50.000 9.07 0.00 44.79 4.09
4165 4337 0.871057 GAAACAGTGAGGCAGTGAGC 59.129 55.000 9.07 0.00 38.11 4.26
4166 4338 2.141517 CTGAAACAGTGAGGCAGTGAG 58.858 52.381 9.07 0.00 38.11 3.51
4167 4339 1.762370 TCTGAAACAGTGAGGCAGTGA 59.238 47.619 9.07 0.00 38.11 3.41
4168 4340 2.245159 TCTGAAACAGTGAGGCAGTG 57.755 50.000 0.00 0.00 40.31 3.66
4169 4341 2.369860 TGATCTGAAACAGTGAGGCAGT 59.630 45.455 0.00 0.00 32.61 4.40
4170 4342 3.049708 TGATCTGAAACAGTGAGGCAG 57.950 47.619 0.00 0.78 32.61 4.85
4171 4343 3.490439 TTGATCTGAAACAGTGAGGCA 57.510 42.857 0.00 0.00 32.61 4.75
4172 4344 3.063180 CGATTGATCTGAAACAGTGAGGC 59.937 47.826 0.00 0.00 32.61 4.70
4173 4345 3.063180 GCGATTGATCTGAAACAGTGAGG 59.937 47.826 0.00 0.00 32.61 3.86
4214 4387 1.541147 CGAGGTGTAAACGTACTGGGA 59.459 52.381 0.00 0.00 0.00 4.37
4215 4388 1.541147 TCGAGGTGTAAACGTACTGGG 59.459 52.381 0.00 0.00 0.00 4.45
4216 4389 2.995466 TCGAGGTGTAAACGTACTGG 57.005 50.000 0.00 0.00 0.00 4.00
4217 4390 4.919168 TGATTTCGAGGTGTAAACGTACTG 59.081 41.667 0.00 0.00 0.00 2.74
4231 4404 6.971602 TCCTAGTATACAGCTTGATTTCGAG 58.028 40.000 5.50 0.00 0.00 4.04
4239 4412 9.378551 TGTAAAAACATCCTAGTATACAGCTTG 57.621 33.333 5.50 0.00 0.00 4.01
4287 4489 2.982488 ACCTTGTTTCTCCTCCTGACAT 59.018 45.455 0.00 0.00 0.00 3.06
4339 4549 1.097547 CAAAGTAGCCCTCCGCCATG 61.098 60.000 0.00 0.00 38.78 3.66
4345 4555 1.815840 GCGCTCAAAGTAGCCCTCC 60.816 63.158 0.00 0.00 39.43 4.30
4365 4575 3.827898 CTCAGCTCGGGTCGGGTC 61.828 72.222 0.00 0.00 0.00 4.46
4368 4578 4.504916 CAGCTCAGCTCGGGTCGG 62.505 72.222 0.00 0.00 36.40 4.79
4548 4758 4.447989 TGCGAGCCTGAGCAGAGC 62.448 66.667 0.00 1.30 43.56 4.09
4692 4917 4.541482 CACGACGCATGGCATGGC 62.541 66.667 27.48 18.31 0.00 4.40
4697 4922 2.324477 GCATACACGACGCATGGC 59.676 61.111 0.00 0.00 0.00 4.40
4704 4929 4.356289 AGTTTTTGTTTGGCATACACGAC 58.644 39.130 10.38 9.26 0.00 4.34
4746 4971 3.278072 TACACGGGAGGTCTCGGCT 62.278 63.158 3.95 0.00 0.00 5.52
4747 4972 2.753043 TACACGGGAGGTCTCGGC 60.753 66.667 3.95 0.00 0.00 5.54
4748 4973 2.413142 GGTACACGGGAGGTCTCGG 61.413 68.421 3.95 0.00 0.00 4.63
4749 4974 1.676635 TGGTACACGGGAGGTCTCG 60.677 63.158 0.00 0.00 0.00 4.04
4750 4975 4.428845 TGGTACACGGGAGGTCTC 57.571 61.111 0.00 0.00 0.00 3.36
4822 5124 3.592814 CCATGCCCGATGCTGCTG 61.593 66.667 0.00 0.00 42.00 4.41
4848 5150 1.285950 GCGGGCTGAAACTCAAACC 59.714 57.895 0.00 0.00 0.00 3.27
4859 5161 3.798954 GAGAAGATCGGGCGGGCTG 62.799 68.421 3.59 3.59 0.00 4.85
4952 5254 2.224719 GGAGGTCCGTATCCTACTGCTA 60.225 54.545 0.00 0.00 35.20 3.49
5052 5391 1.361668 AAGATACAGCAGCGCAACCG 61.362 55.000 11.47 0.00 37.57 4.44
5179 5519 1.833434 TTGGCTTTGGCGACGTAACG 61.833 55.000 0.00 0.00 39.81 3.18
5230 5583 3.419759 CCCGTGCCGTTCGAAAGG 61.420 66.667 23.82 23.82 0.00 3.11
5322 5681 1.675641 CCCAAACCCGGAAGAGCAG 60.676 63.158 0.73 0.00 0.00 4.24
5387 5746 0.105778 CCGGGATCAAGAAGAGGAGC 59.894 60.000 0.00 0.00 0.00 4.70
5442 5801 9.827411 CATACATACGCGCATAGTATATTCTAT 57.173 33.333 5.73 0.00 33.85 1.98
5457 5816 3.432252 GGAATCTTTCCCATACATACGCG 59.568 47.826 3.53 3.53 44.30 6.01
5612 5972 1.470458 GCTTGGCATGCTAGGAAAAGC 60.470 52.381 17.55 12.76 43.08 3.51
5715 6075 4.262207 CCACCGCACTGATCAGTATAAGAT 60.262 45.833 27.44 9.07 40.20 2.40
5717 6077 3.181475 ACCACCGCACTGATCAGTATAAG 60.181 47.826 27.44 16.24 40.20 1.73
5719 6079 2.100749 CACCACCGCACTGATCAGTATA 59.899 50.000 27.44 0.00 40.20 1.47
5722 6082 1.004560 CACCACCGCACTGATCAGT 60.005 57.895 22.89 22.89 43.61 3.41
5723 6083 2.393768 GCACCACCGCACTGATCAG 61.394 63.158 21.37 21.37 0.00 2.90
5735 6095 0.027586 GTGTTCTCAACGTGCACCAC 59.972 55.000 12.15 7.05 0.00 4.16
5772 6508 6.650120 TGGGTAGTAAAAGAGAAAGCTATGG 58.350 40.000 0.00 0.00 0.00 2.74
5882 6960 1.857837 CAAACAAACACGGCCACAATC 59.142 47.619 2.24 0.00 0.00 2.67
5889 6967 0.100503 ACTCTGCAAACAAACACGGC 59.899 50.000 0.00 0.00 0.00 5.68
5890 6968 2.598907 CGTACTCTGCAAACAAACACGG 60.599 50.000 0.00 0.00 0.00 4.94
6009 7242 1.078426 CACGATGTCCACCCCTTCC 60.078 63.158 0.00 0.00 0.00 3.46
6177 7410 1.077930 CTGCACCACCTCCCTCATG 60.078 63.158 0.00 0.00 0.00 3.07
6281 7514 1.303643 AGCTTGTAGCAGTTGGGCC 60.304 57.895 0.00 0.00 45.56 5.80
6340 7573 2.884146 GCAACGTCAATTTGCTGCA 58.116 47.368 0.00 0.00 44.96 4.41
6361 7594 1.005097 TCGGCCCTGAGTACTCTGTAA 59.995 52.381 23.01 2.48 0.00 2.41
6390 7623 4.553678 TGCTAGCCCCAATTAGTAGTAGT 58.446 43.478 13.29 0.00 0.00 2.73
6391 7624 5.746990 ATGCTAGCCCCAATTAGTAGTAG 57.253 43.478 13.29 0.00 0.00 2.57
6392 7625 5.844516 AGAATGCTAGCCCCAATTAGTAGTA 59.155 40.000 13.29 0.00 0.00 1.82
6423 7656 3.017442 CTCACTGTCGATCTACCCAAGA 58.983 50.000 0.00 0.00 39.02 3.02
6572 7805 4.451900 CACAAACCCCTAGATGATGGTAC 58.548 47.826 0.00 0.00 0.00 3.34
6573 7806 3.118038 GCACAAACCCCTAGATGATGGTA 60.118 47.826 0.00 0.00 0.00 3.25
6574 7807 2.357154 GCACAAACCCCTAGATGATGGT 60.357 50.000 0.00 0.00 0.00 3.55
6575 7808 2.092212 AGCACAAACCCCTAGATGATGG 60.092 50.000 0.00 0.00 0.00 3.51
6576 7809 2.947652 CAGCACAAACCCCTAGATGATG 59.052 50.000 0.00 0.00 0.00 3.07
6577 7810 2.578021 ACAGCACAAACCCCTAGATGAT 59.422 45.455 0.00 0.00 0.00 2.45
6578 7811 1.985159 ACAGCACAAACCCCTAGATGA 59.015 47.619 0.00 0.00 0.00 2.92
6604 7837 6.692849 AGCCATGATGGAGATGACTATTAA 57.307 37.500 17.22 0.00 40.96 1.40
6699 7932 4.633126 ACTGCTAGTACACATTTCAGCATG 59.367 41.667 0.00 0.00 38.27 4.06
6718 7951 5.465724 ACAAAAAGCTGTGTAGTAGTACTGC 59.534 40.000 13.29 12.16 40.63 4.40
6729 7962 6.515035 GCCTCAAGTAATACAAAAAGCTGTGT 60.515 38.462 0.00 0.00 0.00 3.72
6849 8082 7.658179 TTCAAAGACTGTCAAGCTACTATTG 57.342 36.000 10.88 1.90 0.00 1.90
6850 8083 8.560374 GTTTTCAAAGACTGTCAAGCTACTATT 58.440 33.333 10.88 0.00 0.00 1.73
6906 8139 2.684881 CTGCGCAATTCAAGTCCCTATT 59.315 45.455 13.05 0.00 0.00 1.73
6921 8154 2.340210 TATTCCCATAAAGCTGCGCA 57.660 45.000 10.98 10.98 0.00 6.09
6924 8157 4.279420 CCTCCTTTATTCCCATAAAGCTGC 59.721 45.833 8.60 0.00 45.93 5.25
6936 8169 7.255486 CCCGATATTTTTGACCCTCCTTTATTC 60.255 40.741 0.00 0.00 0.00 1.75
6945 8178 6.014012 TCTTTTTCCCGATATTTTTGACCCT 58.986 36.000 0.00 0.00 0.00 4.34
6959 8192 7.814107 TGATGATCTTGAAAATTCTTTTTCCCG 59.186 33.333 8.30 1.39 46.70 5.14
7029 8262 5.771469 CAATGGTTACTTGCATGACTTCAA 58.229 37.500 6.60 0.00 0.00 2.69
7030 8263 4.321156 GCAATGGTTACTTGCATGACTTCA 60.321 41.667 6.60 0.57 46.44 3.02
7048 8281 6.555812 AAGCTATATGTGATCAGTGCAATG 57.444 37.500 8.08 8.08 0.00 2.82
7068 8301 7.806690 TGTACTGTGTTCTGAATGATTAAAGC 58.193 34.615 0.00 0.00 0.00 3.51
7087 8320 8.876275 ATATTATGCATTTTTGCCTTGTACTG 57.124 30.769 3.54 0.00 0.00 2.74
7254 8487 7.444629 TGTACAACTACTACTCCTACTGTTG 57.555 40.000 0.00 0.00 39.11 3.33
7256 8489 7.230027 ACTTGTACAACTACTACTCCTACTGT 58.770 38.462 3.59 0.00 0.00 3.55
7323 8641 4.610605 TGCACTTACAGTAAAGCCACTA 57.389 40.909 12.53 0.00 0.00 2.74
7371 8689 1.281867 CAAGAGTACTGGGGCATTGGA 59.718 52.381 0.00 0.00 0.00 3.53
7377 8695 2.458620 ACTACTCAAGAGTACTGGGGC 58.541 52.381 0.00 0.00 42.54 5.80
7383 8701 9.127006 GCAGTTAAAGTAACTACTCAAGAGTAC 57.873 37.037 5.86 0.00 46.66 2.73
7386 8704 8.589335 TTGCAGTTAAAGTAACTACTCAAGAG 57.411 34.615 0.51 0.00 46.66 2.85
7445 8763 6.204359 CAAGTTAAGCCACATCAGATATTGC 58.796 40.000 0.00 0.00 0.00 3.56
7455 8773 2.862541 TCTGTGCAAGTTAAGCCACAT 58.137 42.857 0.00 0.00 0.00 3.21
7464 8782 5.365021 AGCTAGGAATATCTGTGCAAGTT 57.635 39.130 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.