Multiple sequence alignment - TraesCS4A01G224600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G224600 chr4A 100.000 2427 0 0 1 2427 532225099 532222673 0.000000e+00 4482.0
1 TraesCS4A01G224600 chr2B 92.155 854 47 9 761 1605 674067215 674066373 0.000000e+00 1188.0
2 TraesCS4A01G224600 chr2B 87.917 720 66 11 3 717 423910637 423911340 0.000000e+00 828.0
3 TraesCS4A01G224600 chr2B 94.817 328 14 1 2101 2425 674066320 674065993 2.150000e-140 508.0
4 TraesCS4A01G224600 chr2B 96.364 55 2 0 1672 1726 674066373 674066319 9.240000e-15 91.6
5 TraesCS4A01G224600 chr3D 89.430 719 62 6 1 719 96641097 96640393 0.000000e+00 894.0
6 TraesCS4A01G224600 chr3D 88.547 716 65 7 3 716 341473566 341474266 0.000000e+00 852.0
7 TraesCS4A01G224600 chr3D 88.162 718 52 15 3 717 16320355 16319668 0.000000e+00 824.0
8 TraesCS4A01G224600 chr4B 89.400 717 59 9 3 717 37869880 37870581 0.000000e+00 887.0
9 TraesCS4A01G224600 chr4B 93.356 587 36 3 1022 1605 563997949 563997363 0.000000e+00 865.0
10 TraesCS4A01G224600 chr4B 92.826 460 33 0 3 462 588581787 588582246 0.000000e+00 667.0
11 TraesCS4A01G224600 chr4B 93.293 328 19 1 2101 2425 563997310 563996983 4.690000e-132 481.0
12 TraesCS4A01G224600 chr4B 96.364 55 2 0 1672 1726 563997363 563997309 9.240000e-15 91.6
13 TraesCS4A01G224600 chr6A 88.509 731 56 7 1 717 612121779 612122495 0.000000e+00 859.0
14 TraesCS4A01G224600 chr3B 90.135 669 42 7 762 1419 543183698 543184353 0.000000e+00 848.0
15 TraesCS4A01G224600 chr3B 88.285 717 66 9 3 717 798552448 798553148 0.000000e+00 843.0
16 TraesCS4A01G224600 chr3B 94.529 329 13 3 2101 2425 543184452 543184779 1.000000e-138 503.0
17 TraesCS4A01G224600 chr3B 94.545 55 3 0 1672 1726 543184399 543184453 4.300000e-13 86.1
18 TraesCS4A01G224600 chr3B 95.652 46 1 1 1560 1605 543184355 543184399 3.350000e-09 73.1
19 TraesCS4A01G224600 chr4D 88.006 717 67 10 3 717 443713278 443712579 0.000000e+00 830.0
20 TraesCS4A01G224600 chr2D 87.344 719 71 13 3 717 650852842 650853544 0.000000e+00 806.0
21 TraesCS4A01G224600 chr2D 88.042 669 60 8 3 671 576888403 576889051 0.000000e+00 774.0
22 TraesCS4A01G224600 chr2D 87.687 601 56 7 3 603 58736786 58736204 0.000000e+00 684.0
23 TraesCS4A01G224600 chr2D 89.340 197 20 1 1418 1613 81952989 81953185 1.860000e-61 246.0
24 TraesCS4A01G224600 chr2D 88.325 197 22 1 1418 1613 412044181 412044377 4.030000e-58 235.0
25 TraesCS4A01G224600 chr5B 86.872 716 75 12 3 715 631454417 631455116 0.000000e+00 784.0
26 TraesCS4A01G224600 chr6B 86.565 722 79 10 3 721 620698839 620698133 0.000000e+00 780.0
27 TraesCS4A01G224600 chr6B 88.563 647 59 5 3 649 641301005 641301636 0.000000e+00 771.0
28 TraesCS4A01G224600 chr6B 83.961 717 87 13 3 716 674037038 674036347 0.000000e+00 662.0
29 TraesCS4A01G224600 chr6D 86.732 716 76 12 3 716 36260787 36260089 0.000000e+00 778.0
30 TraesCS4A01G224600 chr5D 85.475 716 86 11 3 715 466006985 466006285 0.000000e+00 730.0
31 TraesCS4A01G224600 chr1B 88.660 194 21 1 1421 1613 3862361 3862168 4.030000e-58 235.0
32 TraesCS4A01G224600 chr1B 95.122 41 2 0 1545 1585 19055263 19055223 5.600000e-07 65.8
33 TraesCS4A01G224600 chr7D 95.122 41 2 0 1545 1585 40706233 40706193 5.600000e-07 65.8
34 TraesCS4A01G224600 chr2A 92.683 41 3 0 1545 1585 701774838 701774798 2.610000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G224600 chr4A 532222673 532225099 2426 True 4482.000000 4482 100.000000 1 2427 1 chr4A.!!$R1 2426
1 TraesCS4A01G224600 chr2B 423910637 423911340 703 False 828.000000 828 87.917000 3 717 1 chr2B.!!$F1 714
2 TraesCS4A01G224600 chr2B 674065993 674067215 1222 True 595.866667 1188 94.445333 761 2425 3 chr2B.!!$R1 1664
3 TraesCS4A01G224600 chr3D 96640393 96641097 704 True 894.000000 894 89.430000 1 719 1 chr3D.!!$R2 718
4 TraesCS4A01G224600 chr3D 341473566 341474266 700 False 852.000000 852 88.547000 3 716 1 chr3D.!!$F1 713
5 TraesCS4A01G224600 chr3D 16319668 16320355 687 True 824.000000 824 88.162000 3 717 1 chr3D.!!$R1 714
6 TraesCS4A01G224600 chr4B 37869880 37870581 701 False 887.000000 887 89.400000 3 717 1 chr4B.!!$F1 714
7 TraesCS4A01G224600 chr4B 563996983 563997949 966 True 479.200000 865 94.337667 1022 2425 3 chr4B.!!$R1 1403
8 TraesCS4A01G224600 chr6A 612121779 612122495 716 False 859.000000 859 88.509000 1 717 1 chr6A.!!$F1 716
9 TraesCS4A01G224600 chr3B 798552448 798553148 700 False 843.000000 843 88.285000 3 717 1 chr3B.!!$F1 714
10 TraesCS4A01G224600 chr3B 543183698 543184779 1081 False 377.550000 848 93.715250 762 2425 4 chr3B.!!$F2 1663
11 TraesCS4A01G224600 chr4D 443712579 443713278 699 True 830.000000 830 88.006000 3 717 1 chr4D.!!$R1 714
12 TraesCS4A01G224600 chr2D 650852842 650853544 702 False 806.000000 806 87.344000 3 717 1 chr2D.!!$F4 714
13 TraesCS4A01G224600 chr2D 576888403 576889051 648 False 774.000000 774 88.042000 3 671 1 chr2D.!!$F3 668
14 TraesCS4A01G224600 chr2D 58736204 58736786 582 True 684.000000 684 87.687000 3 603 1 chr2D.!!$R1 600
15 TraesCS4A01G224600 chr5B 631454417 631455116 699 False 784.000000 784 86.872000 3 715 1 chr5B.!!$F1 712
16 TraesCS4A01G224600 chr6B 620698133 620698839 706 True 780.000000 780 86.565000 3 721 1 chr6B.!!$R1 718
17 TraesCS4A01G224600 chr6B 641301005 641301636 631 False 771.000000 771 88.563000 3 649 1 chr6B.!!$F1 646
18 TraesCS4A01G224600 chr6B 674036347 674037038 691 True 662.000000 662 83.961000 3 716 1 chr6B.!!$R2 713
19 TraesCS4A01G224600 chr6D 36260089 36260787 698 True 778.000000 778 86.732000 3 716 1 chr6D.!!$R1 713
20 TraesCS4A01G224600 chr5D 466006285 466006985 700 True 730.000000 730 85.475000 3 715 1 chr5D.!!$R1 712

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
731 753 0.106918 AAACAACGAGACCCTTGCCA 60.107 50.0 0.0 0.0 0.0 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1642 1676 0.03101 GGAGGAGGTGGGGACAGTAT 60.031 60.0 0.0 0.0 44.46 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 40 1.350019 TGACGACTCACCTCCTCACTA 59.650 52.381 0.00 0.00 0.00 2.74
169 171 3.096852 ACACACCATCGAACTCCAGATA 58.903 45.455 0.00 0.00 0.00 1.98
178 180 0.469917 AACTCCAGATATGGCACCCG 59.530 55.000 0.00 0.00 0.00 5.28
180 182 0.319728 CTCCAGATATGGCACCCGAG 59.680 60.000 0.00 0.00 0.00 4.63
317 319 1.229082 TACCTCCCAAGCTCCGTGT 60.229 57.895 0.00 0.00 0.00 4.49
465 467 1.067142 CCGATGGTCTCGTCAGGAAAA 60.067 52.381 0.00 0.00 46.18 2.29
466 468 1.993370 CGATGGTCTCGTCAGGAAAAC 59.007 52.381 0.00 0.00 42.56 2.43
467 469 1.993370 GATGGTCTCGTCAGGAAAACG 59.007 52.381 0.00 0.00 41.39 3.60
468 470 0.599204 TGGTCTCGTCAGGAAAACGC 60.599 55.000 0.00 0.00 39.90 4.84
469 471 0.319641 GGTCTCGTCAGGAAAACGCT 60.320 55.000 0.00 0.00 39.90 5.07
470 472 0.784778 GTCTCGTCAGGAAAACGCTG 59.215 55.000 0.00 0.00 39.90 5.18
471 473 0.387929 TCTCGTCAGGAAAACGCTGT 59.612 50.000 0.00 0.00 39.90 4.40
472 474 1.202486 TCTCGTCAGGAAAACGCTGTT 60.202 47.619 0.00 0.00 39.90 3.16
473 475 2.034939 TCTCGTCAGGAAAACGCTGTTA 59.965 45.455 0.00 0.00 39.90 2.41
474 476 2.993899 CTCGTCAGGAAAACGCTGTTAT 59.006 45.455 0.00 0.00 39.90 1.89
475 477 2.991190 TCGTCAGGAAAACGCTGTTATC 59.009 45.455 0.00 0.00 39.90 1.75
476 478 2.093783 CGTCAGGAAAACGCTGTTATCC 59.906 50.000 0.00 0.00 32.84 2.59
477 479 2.418976 GTCAGGAAAACGCTGTTATCCC 59.581 50.000 0.00 0.00 0.00 3.85
478 480 1.743394 CAGGAAAACGCTGTTATCCCC 59.257 52.381 0.00 0.00 0.00 4.81
662 680 1.957186 CGGAGAACGGCGTTGGAAA 60.957 57.895 31.90 0.00 39.42 3.13
704 726 2.892425 GATTCCAGCCGCACGGAG 60.892 66.667 14.43 4.05 37.50 4.63
721 743 2.689646 GGAGGAGAGGAAAACAACGAG 58.310 52.381 0.00 0.00 0.00 4.18
722 744 2.299297 GGAGGAGAGGAAAACAACGAGA 59.701 50.000 0.00 0.00 0.00 4.04
723 745 3.318886 GAGGAGAGGAAAACAACGAGAC 58.681 50.000 0.00 0.00 0.00 3.36
724 746 2.037381 AGGAGAGGAAAACAACGAGACC 59.963 50.000 0.00 0.00 0.00 3.85
725 747 2.414806 GAGAGGAAAACAACGAGACCC 58.585 52.381 0.00 0.00 0.00 4.46
726 748 2.037381 GAGAGGAAAACAACGAGACCCT 59.963 50.000 0.00 0.00 0.00 4.34
727 749 2.438392 AGAGGAAAACAACGAGACCCTT 59.562 45.455 0.00 0.00 0.00 3.95
728 750 2.548480 GAGGAAAACAACGAGACCCTTG 59.452 50.000 0.00 0.00 0.00 3.61
729 751 1.001706 GGAAAACAACGAGACCCTTGC 60.002 52.381 0.00 0.00 0.00 4.01
730 752 1.001706 GAAAACAACGAGACCCTTGCC 60.002 52.381 0.00 0.00 0.00 4.52
731 753 0.106918 AAACAACGAGACCCTTGCCA 60.107 50.000 0.00 0.00 0.00 4.92
732 754 0.106918 AACAACGAGACCCTTGCCAA 60.107 50.000 0.00 0.00 0.00 4.52
733 755 0.110486 ACAACGAGACCCTTGCCAAT 59.890 50.000 0.00 0.00 0.00 3.16
734 756 0.804989 CAACGAGACCCTTGCCAATC 59.195 55.000 0.00 0.00 0.00 2.67
735 757 0.673644 AACGAGACCCTTGCCAATCG 60.674 55.000 0.00 0.00 36.32 3.34
736 758 2.464459 CGAGACCCTTGCCAATCGC 61.464 63.158 0.00 0.00 38.31 4.58
737 759 1.078143 GAGACCCTTGCCAATCGCT 60.078 57.895 0.00 0.00 38.78 4.93
738 760 1.078143 AGACCCTTGCCAATCGCTC 60.078 57.895 0.00 0.00 38.78 5.03
739 761 1.377202 GACCCTTGCCAATCGCTCA 60.377 57.895 0.00 0.00 38.78 4.26
740 762 1.648467 GACCCTTGCCAATCGCTCAC 61.648 60.000 0.00 0.00 38.78 3.51
741 763 2.409870 CCCTTGCCAATCGCTCACC 61.410 63.158 0.00 0.00 38.78 4.02
742 764 2.409870 CCTTGCCAATCGCTCACCC 61.410 63.158 0.00 0.00 38.78 4.61
743 765 2.361104 TTGCCAATCGCTCACCCC 60.361 61.111 0.00 0.00 38.78 4.95
744 766 3.936772 TTGCCAATCGCTCACCCCC 62.937 63.158 0.00 0.00 38.78 5.40
759 781 3.243128 CCCCCTCAACGGTTTGTAG 57.757 57.895 0.00 0.00 34.02 2.74
775 797 5.331902 GTTTGTAGCATCGCACACATTTAT 58.668 37.500 0.00 0.00 0.00 1.40
776 798 4.794248 TGTAGCATCGCACACATTTATC 57.206 40.909 0.00 0.00 0.00 1.75
820 842 1.066787 TGATGGCCACGTCGATTTACA 60.067 47.619 8.16 0.00 35.31 2.41
827 849 1.343821 CGTCGATTTACAGTGCCGC 59.656 57.895 0.00 0.00 0.00 6.53
834 856 1.302383 TTTACAGTGCCGCGGGAATG 61.302 55.000 39.32 39.32 37.54 2.67
839 861 2.125147 TGCCGCGGGAATGAAGAG 60.125 61.111 29.38 0.00 0.00 2.85
886 908 3.551259 ACGAATTGCGGGATTGACT 57.449 47.368 0.00 0.00 46.49 3.41
907 929 1.153745 CGACTCTTTCGCCCCTCAG 60.154 63.158 0.00 0.00 41.87 3.35
908 930 1.219393 GACTCTTTCGCCCCTCAGG 59.781 63.158 0.00 0.00 39.47 3.86
921 943 3.249189 TCAGGCCCTCACACCCAC 61.249 66.667 0.00 0.00 0.00 4.61
927 949 2.516888 CCCTCACACCCACCGTCTT 61.517 63.158 0.00 0.00 0.00 3.01
990 1021 2.202492 CCACTTCGCTCGAGGTCG 60.202 66.667 15.58 10.39 41.45 4.79
1007 1038 3.493303 GCCCCTCTCCATGTCCCC 61.493 72.222 0.00 0.00 0.00 4.81
1101 1132 0.317269 CTGAACTGCCACAAACTGCG 60.317 55.000 0.00 0.00 0.00 5.18
1161 1192 4.179579 GCCGCGGATTTGCTCACC 62.180 66.667 33.48 2.06 0.00 4.02
1171 1202 2.835701 TTTGCTCACCGCTAGCTCCG 62.836 60.000 13.93 2.38 40.73 4.63
1185 1216 2.537143 AGCTCCGGGTCTTTTCTTCTA 58.463 47.619 0.00 0.00 0.00 2.10
1195 1226 5.870433 GGGTCTTTTCTTCTACTTAGTGCTC 59.130 44.000 0.00 0.00 0.00 4.26
1220 1251 5.195960 TCTTATCTCCTCTTCCCTAACCTCA 59.804 44.000 0.00 0.00 0.00 3.86
1221 1252 4.567987 ATCTCCTCTTCCCTAACCTCAT 57.432 45.455 0.00 0.00 0.00 2.90
1232 1263 4.093011 CCCTAACCTCATCTATGCTAGCT 58.907 47.826 17.23 4.07 0.00 3.32
1314 1347 1.310216 GCAACCGGCCCGTCTTATTT 61.310 55.000 0.00 0.00 36.11 1.40
1360 1393 1.199558 AGCTACTCAACTCGTCGAACC 59.800 52.381 0.00 0.00 0.00 3.62
1390 1423 2.684881 CCATGTTCGGGAAGAAGGATTG 59.315 50.000 0.00 0.00 39.95 2.67
1419 1452 1.809869 CGTCTCCTCTGCCGAATGA 59.190 57.895 0.00 0.00 0.00 2.57
1605 1639 1.074405 TGATGCTTCAGGCCTTCAGTT 59.926 47.619 0.00 0.00 40.92 3.16
1606 1640 2.305635 TGATGCTTCAGGCCTTCAGTTA 59.694 45.455 0.00 0.00 40.92 2.24
1607 1641 2.185004 TGCTTCAGGCCTTCAGTTAC 57.815 50.000 0.00 0.00 40.92 2.50
1608 1642 1.419762 TGCTTCAGGCCTTCAGTTACA 59.580 47.619 0.00 0.00 40.92 2.41
1609 1643 2.040278 TGCTTCAGGCCTTCAGTTACAT 59.960 45.455 0.00 0.00 40.92 2.29
1610 1644 3.084786 GCTTCAGGCCTTCAGTTACATT 58.915 45.455 0.00 0.00 34.27 2.71
1611 1645 3.507622 GCTTCAGGCCTTCAGTTACATTT 59.492 43.478 0.00 0.00 34.27 2.32
1612 1646 4.021981 GCTTCAGGCCTTCAGTTACATTTT 60.022 41.667 0.00 0.00 34.27 1.82
1613 1647 5.509670 GCTTCAGGCCTTCAGTTACATTTTT 60.510 40.000 0.00 0.00 34.27 1.94
1632 1666 5.350504 TTTTTGTCTTTGCCATCCAAGAA 57.649 34.783 0.00 0.00 34.34 2.52
1633 1667 4.589216 TTTGTCTTTGCCATCCAAGAAG 57.411 40.909 0.00 0.00 34.34 2.85
1634 1668 3.507162 TGTCTTTGCCATCCAAGAAGA 57.493 42.857 0.00 0.00 34.34 2.87
1635 1669 3.831323 TGTCTTTGCCATCCAAGAAGAA 58.169 40.909 0.00 0.00 34.34 2.52
1636 1670 4.214310 TGTCTTTGCCATCCAAGAAGAAA 58.786 39.130 0.00 0.00 34.34 2.52
1637 1671 4.279169 TGTCTTTGCCATCCAAGAAGAAAG 59.721 41.667 0.00 0.00 34.34 2.62
1638 1672 4.279420 GTCTTTGCCATCCAAGAAGAAAGT 59.721 41.667 0.00 0.00 34.34 2.66
1639 1673 4.895297 TCTTTGCCATCCAAGAAGAAAGTT 59.105 37.500 0.00 0.00 34.34 2.66
1640 1674 6.016276 GTCTTTGCCATCCAAGAAGAAAGTTA 60.016 38.462 0.00 0.00 34.34 2.24
1641 1675 5.705609 TTGCCATCCAAGAAGAAAGTTAC 57.294 39.130 0.00 0.00 0.00 2.50
1642 1676 4.724399 TGCCATCCAAGAAGAAAGTTACA 58.276 39.130 0.00 0.00 0.00 2.41
1643 1677 5.324409 TGCCATCCAAGAAGAAAGTTACAT 58.676 37.500 0.00 0.00 0.00 2.29
1644 1678 6.480763 TGCCATCCAAGAAGAAAGTTACATA 58.519 36.000 0.00 0.00 0.00 2.29
1645 1679 6.374333 TGCCATCCAAGAAGAAAGTTACATAC 59.626 38.462 0.00 0.00 0.00 2.39
1646 1680 6.599638 GCCATCCAAGAAGAAAGTTACATACT 59.400 38.462 0.00 0.00 39.32 2.12
1647 1681 7.414540 GCCATCCAAGAAGAAAGTTACATACTG 60.415 40.741 0.00 0.00 37.12 2.74
1648 1682 7.607991 CCATCCAAGAAGAAAGTTACATACTGT 59.392 37.037 0.00 0.00 37.12 3.55
1649 1683 8.660373 CATCCAAGAAGAAAGTTACATACTGTC 58.340 37.037 0.00 0.00 40.85 3.51
1650 1684 7.159372 TCCAAGAAGAAAGTTACATACTGTCC 58.841 38.462 0.00 0.00 41.38 4.02
1651 1685 6.371825 CCAAGAAGAAAGTTACATACTGTCCC 59.628 42.308 0.00 0.00 41.38 4.46
1652 1686 6.051179 AGAAGAAAGTTACATACTGTCCCC 57.949 41.667 0.00 0.00 41.38 4.81
1653 1687 5.546499 AGAAGAAAGTTACATACTGTCCCCA 59.454 40.000 0.00 0.00 41.38 4.96
1654 1688 5.161943 AGAAAGTTACATACTGTCCCCAC 57.838 43.478 0.00 0.00 41.38 4.61
1655 1689 3.994931 AAGTTACATACTGTCCCCACC 57.005 47.619 0.00 0.00 37.12 4.61
1656 1690 3.200958 AGTTACATACTGTCCCCACCT 57.799 47.619 0.00 0.00 35.19 4.00
1657 1691 3.105283 AGTTACATACTGTCCCCACCTC 58.895 50.000 0.00 0.00 35.19 3.85
1658 1692 2.169978 GTTACATACTGTCCCCACCTCC 59.830 54.545 0.00 0.00 0.00 4.30
1659 1693 0.417841 ACATACTGTCCCCACCTCCT 59.582 55.000 0.00 0.00 0.00 3.69
1660 1694 1.123928 CATACTGTCCCCACCTCCTC 58.876 60.000 0.00 0.00 0.00 3.71
1661 1695 0.031010 ATACTGTCCCCACCTCCTCC 60.031 60.000 0.00 0.00 0.00 4.30
1662 1696 1.153695 TACTGTCCCCACCTCCTCCT 61.154 60.000 0.00 0.00 0.00 3.69
1663 1697 1.229658 CTGTCCCCACCTCCTCCTT 60.230 63.158 0.00 0.00 0.00 3.36
1664 1698 0.042731 CTGTCCCCACCTCCTCCTTA 59.957 60.000 0.00 0.00 0.00 2.69
1665 1699 0.722676 TGTCCCCACCTCCTCCTTAT 59.277 55.000 0.00 0.00 0.00 1.73
1666 1700 1.941682 TGTCCCCACCTCCTCCTTATA 59.058 52.381 0.00 0.00 0.00 0.98
1667 1701 2.527057 TGTCCCCACCTCCTCCTTATAT 59.473 50.000 0.00 0.00 0.00 0.86
1668 1702 3.050564 TGTCCCCACCTCCTCCTTATATT 60.051 47.826 0.00 0.00 0.00 1.28
1669 1703 4.173244 TGTCCCCACCTCCTCCTTATATTA 59.827 45.833 0.00 0.00 0.00 0.98
1670 1704 5.162648 TGTCCCCACCTCCTCCTTATATTAT 60.163 44.000 0.00 0.00 0.00 1.28
1671 1705 5.791141 GTCCCCACCTCCTCCTTATATTATT 59.209 44.000 0.00 0.00 0.00 1.40
1726 1760 5.416952 GCATCAATGGGAAGGATACATTAGG 59.583 44.000 0.00 0.00 41.41 2.69
1727 1761 6.546484 CATCAATGGGAAGGATACATTAGGT 58.454 40.000 0.00 0.00 41.41 3.08
1728 1762 7.689299 CATCAATGGGAAGGATACATTAGGTA 58.311 38.462 0.00 0.00 41.41 3.08
1729 1763 7.074653 TCAATGGGAAGGATACATTAGGTAC 57.925 40.000 0.00 0.00 41.41 3.34
1730 1764 6.043938 TCAATGGGAAGGATACATTAGGTACC 59.956 42.308 2.73 2.73 41.41 3.34
1731 1765 3.899360 TGGGAAGGATACATTAGGTACCG 59.101 47.826 6.18 0.00 41.41 4.02
1732 1766 3.899980 GGGAAGGATACATTAGGTACCGT 59.100 47.826 6.18 0.37 41.41 4.83
1733 1767 4.262335 GGGAAGGATACATTAGGTACCGTG 60.262 50.000 6.18 9.66 41.41 4.94
1734 1768 4.343239 GGAAGGATACATTAGGTACCGTGT 59.657 45.833 19.66 19.66 41.41 4.49
1735 1769 5.536161 GGAAGGATACATTAGGTACCGTGTA 59.464 44.000 21.83 21.83 41.41 2.90
1736 1770 6.294397 GGAAGGATACATTAGGTACCGTGTAG 60.294 46.154 23.03 11.44 41.41 2.74
1737 1771 5.945310 AGGATACATTAGGTACCGTGTAGA 58.055 41.667 23.03 11.21 41.41 2.59
1738 1772 5.767168 AGGATACATTAGGTACCGTGTAGAC 59.233 44.000 23.03 19.14 41.41 2.59
1739 1773 5.767168 GGATACATTAGGTACCGTGTAGACT 59.233 44.000 23.03 13.03 34.07 3.24
1740 1774 6.072783 GGATACATTAGGTACCGTGTAGACTC 60.073 46.154 23.03 17.95 34.07 3.36
1741 1775 4.853007 ACATTAGGTACCGTGTAGACTCT 58.147 43.478 15.93 0.00 0.00 3.24
1742 1776 5.994250 ACATTAGGTACCGTGTAGACTCTA 58.006 41.667 15.93 0.00 0.00 2.43
1743 1777 6.599445 ACATTAGGTACCGTGTAGACTCTAT 58.401 40.000 15.93 0.00 0.00 1.98
1744 1778 6.485984 ACATTAGGTACCGTGTAGACTCTATG 59.514 42.308 15.93 3.19 0.00 2.23
1745 1779 4.500499 AGGTACCGTGTAGACTCTATGT 57.500 45.455 6.18 0.00 0.00 2.29
1746 1780 4.853007 AGGTACCGTGTAGACTCTATGTT 58.147 43.478 6.18 0.00 0.00 2.71
1747 1781 4.880696 AGGTACCGTGTAGACTCTATGTTC 59.119 45.833 6.18 0.00 0.00 3.18
1748 1782 4.637534 GGTACCGTGTAGACTCTATGTTCA 59.362 45.833 0.00 0.00 0.00 3.18
1749 1783 5.124457 GGTACCGTGTAGACTCTATGTTCAA 59.876 44.000 0.00 0.00 0.00 2.69
1750 1784 5.312120 ACCGTGTAGACTCTATGTTCAAG 57.688 43.478 0.00 0.00 0.00 3.02
1751 1785 4.158025 ACCGTGTAGACTCTATGTTCAAGG 59.842 45.833 5.40 5.40 33.81 3.61
1752 1786 4.398358 CCGTGTAGACTCTATGTTCAAGGA 59.602 45.833 2.14 0.00 31.60 3.36
1753 1787 5.067936 CCGTGTAGACTCTATGTTCAAGGAT 59.932 44.000 2.14 0.00 31.60 3.24
1754 1788 6.405953 CCGTGTAGACTCTATGTTCAAGGATT 60.406 42.308 2.14 0.00 31.60 3.01
1755 1789 7.036220 CGTGTAGACTCTATGTTCAAGGATTT 58.964 38.462 0.00 0.00 0.00 2.17
1756 1790 7.221067 CGTGTAGACTCTATGTTCAAGGATTTC 59.779 40.741 0.00 0.00 0.00 2.17
1757 1791 8.035394 GTGTAGACTCTATGTTCAAGGATTTCA 58.965 37.037 0.00 0.00 0.00 2.69
1758 1792 8.253810 TGTAGACTCTATGTTCAAGGATTTCAG 58.746 37.037 0.00 0.00 0.00 3.02
1759 1793 7.251321 AGACTCTATGTTCAAGGATTTCAGT 57.749 36.000 0.00 0.00 0.00 3.41
1760 1794 8.367660 AGACTCTATGTTCAAGGATTTCAGTA 57.632 34.615 0.00 0.00 0.00 2.74
1761 1795 8.816894 AGACTCTATGTTCAAGGATTTCAGTAA 58.183 33.333 0.00 0.00 0.00 2.24
1762 1796 9.092876 GACTCTATGTTCAAGGATTTCAGTAAG 57.907 37.037 0.00 0.00 0.00 2.34
1763 1797 8.043710 ACTCTATGTTCAAGGATTTCAGTAAGG 58.956 37.037 0.00 0.00 0.00 2.69
1764 1798 8.146053 TCTATGTTCAAGGATTTCAGTAAGGA 57.854 34.615 0.00 0.00 0.00 3.36
1765 1799 8.602424 TCTATGTTCAAGGATTTCAGTAAGGAA 58.398 33.333 0.00 0.00 0.00 3.36
1766 1800 9.231297 CTATGTTCAAGGATTTCAGTAAGGAAA 57.769 33.333 0.00 0.00 40.72 3.13
1767 1801 7.510549 TGTTCAAGGATTTCAGTAAGGAAAG 57.489 36.000 0.00 0.00 39.88 2.62
1768 1802 6.016276 TGTTCAAGGATTTCAGTAAGGAAAGC 60.016 38.462 0.00 0.00 41.23 3.51
1769 1803 5.880901 TCAAGGATTTCAGTAAGGAAAGCT 58.119 37.500 4.25 0.00 41.57 3.74
1770 1804 7.016153 TCAAGGATTTCAGTAAGGAAAGCTA 57.984 36.000 4.25 0.00 41.57 3.32
1771 1805 6.879458 TCAAGGATTTCAGTAAGGAAAGCTAC 59.121 38.462 4.25 0.00 41.57 3.58
1772 1806 5.746284 AGGATTTCAGTAAGGAAAGCTACC 58.254 41.667 4.25 2.08 41.57 3.18
1773 1807 5.250774 AGGATTTCAGTAAGGAAAGCTACCA 59.749 40.000 11.59 0.00 41.57 3.25
1774 1808 6.069381 AGGATTTCAGTAAGGAAAGCTACCAT 60.069 38.462 11.59 3.30 41.57 3.55
1775 1809 6.038714 GGATTTCAGTAAGGAAAGCTACCATG 59.961 42.308 11.59 5.70 41.57 3.66
1776 1810 5.755409 TTCAGTAAGGAAAGCTACCATGA 57.245 39.130 11.59 7.47 0.00 3.07
1777 1811 5.957771 TCAGTAAGGAAAGCTACCATGAT 57.042 39.130 11.59 0.00 0.00 2.45
1778 1812 5.918608 TCAGTAAGGAAAGCTACCATGATC 58.081 41.667 11.59 0.00 0.00 2.92
1779 1813 5.663106 TCAGTAAGGAAAGCTACCATGATCT 59.337 40.000 11.59 1.75 0.00 2.75
1780 1814 5.757320 CAGTAAGGAAAGCTACCATGATCTG 59.243 44.000 11.59 8.47 0.00 2.90
1811 1845 7.936496 TGGAACAATGTTGATATGTGTGTAT 57.064 32.000 2.20 0.00 31.92 2.29
1812 1846 7.760437 TGGAACAATGTTGATATGTGTGTATG 58.240 34.615 2.20 0.00 31.92 2.39
1813 1847 7.609532 TGGAACAATGTTGATATGTGTGTATGA 59.390 33.333 2.20 0.00 31.92 2.15
1814 1848 8.623903 GGAACAATGTTGATATGTGTGTATGAT 58.376 33.333 2.20 0.00 0.00 2.45
1817 1851 8.623903 ACAATGTTGATATGTGTGTATGATTCC 58.376 33.333 0.00 0.00 0.00 3.01
1818 1852 8.623030 CAATGTTGATATGTGTGTATGATTCCA 58.377 33.333 0.00 0.00 0.00 3.53
1819 1853 8.750515 ATGTTGATATGTGTGTATGATTCCAA 57.249 30.769 0.00 0.00 0.00 3.53
1820 1854 8.572855 TGTTGATATGTGTGTATGATTCCAAA 57.427 30.769 0.00 0.00 0.00 3.28
1821 1855 9.187996 TGTTGATATGTGTGTATGATTCCAAAT 57.812 29.630 0.00 0.00 0.00 2.32
1822 1856 9.454585 GTTGATATGTGTGTATGATTCCAAATG 57.545 33.333 0.00 0.00 0.00 2.32
1823 1857 8.168790 TGATATGTGTGTATGATTCCAAATGG 57.831 34.615 0.00 0.00 0.00 3.16
1824 1858 4.717233 TGTGTGTATGATTCCAAATGGC 57.283 40.909 0.00 0.00 34.44 4.40
1825 1859 3.446873 TGTGTGTATGATTCCAAATGGCC 59.553 43.478 0.00 0.00 34.44 5.36
1826 1860 3.701040 GTGTGTATGATTCCAAATGGCCT 59.299 43.478 3.32 0.00 34.44 5.19
1827 1861 4.160252 GTGTGTATGATTCCAAATGGCCTT 59.840 41.667 3.32 0.00 34.44 4.35
1828 1862 4.776837 TGTGTATGATTCCAAATGGCCTTT 59.223 37.500 3.32 0.00 34.44 3.11
1829 1863 5.111293 GTGTATGATTCCAAATGGCCTTTG 58.889 41.667 16.37 16.37 43.27 2.77
1830 1864 2.766345 TGATTCCAAATGGCCTTTGC 57.234 45.000 17.37 8.28 42.46 3.68
1831 1865 1.976404 TGATTCCAAATGGCCTTTGCA 59.024 42.857 17.37 10.11 42.46 4.08
1832 1866 2.572556 TGATTCCAAATGGCCTTTGCAT 59.427 40.909 17.37 12.78 42.46 3.96
1833 1867 2.476126 TTCCAAATGGCCTTTGCATG 57.524 45.000 17.37 7.95 42.46 4.06
1834 1868 1.350071 TCCAAATGGCCTTTGCATGT 58.650 45.000 17.37 0.00 42.46 3.21
1835 1869 1.698532 TCCAAATGGCCTTTGCATGTT 59.301 42.857 17.37 0.00 42.46 2.71
1836 1870 2.106166 TCCAAATGGCCTTTGCATGTTT 59.894 40.909 17.37 0.00 42.46 2.83
1837 1871 2.885894 CCAAATGGCCTTTGCATGTTTT 59.114 40.909 17.37 0.00 42.46 2.43
1838 1872 3.058085 CCAAATGGCCTTTGCATGTTTTC 60.058 43.478 17.37 0.00 42.46 2.29
1839 1873 3.488778 AATGGCCTTTGCATGTTTTCA 57.511 38.095 3.32 0.00 40.13 2.69
1840 1874 2.529780 TGGCCTTTGCATGTTTTCAG 57.470 45.000 3.32 0.00 40.13 3.02
1841 1875 2.037901 TGGCCTTTGCATGTTTTCAGA 58.962 42.857 3.32 0.00 40.13 3.27
1842 1876 2.433604 TGGCCTTTGCATGTTTTCAGAA 59.566 40.909 3.32 0.00 40.13 3.02
1843 1877 3.118482 TGGCCTTTGCATGTTTTCAGAAA 60.118 39.130 3.32 0.00 40.13 2.52
1844 1878 4.067192 GGCCTTTGCATGTTTTCAGAAAT 58.933 39.130 0.00 0.00 40.13 2.17
1845 1879 4.516321 GGCCTTTGCATGTTTTCAGAAATT 59.484 37.500 0.00 0.00 40.13 1.82
1846 1880 5.445845 GCCTTTGCATGTTTTCAGAAATTG 58.554 37.500 0.00 0.00 37.47 2.32
1847 1881 5.561339 GCCTTTGCATGTTTTCAGAAATTGG 60.561 40.000 0.00 0.00 37.47 3.16
1848 1882 5.049267 CCTTTGCATGTTTTCAGAAATTGGG 60.049 40.000 0.00 0.00 0.00 4.12
1849 1883 4.952071 TGCATGTTTTCAGAAATTGGGA 57.048 36.364 0.00 0.00 0.00 4.37
1850 1884 5.486735 TGCATGTTTTCAGAAATTGGGAT 57.513 34.783 0.00 0.00 0.00 3.85
1851 1885 5.481105 TGCATGTTTTCAGAAATTGGGATC 58.519 37.500 0.00 0.00 0.00 3.36
1852 1886 5.011840 TGCATGTTTTCAGAAATTGGGATCA 59.988 36.000 0.00 0.00 0.00 2.92
1853 1887 6.110707 GCATGTTTTCAGAAATTGGGATCAT 58.889 36.000 0.00 0.00 0.00 2.45
1854 1888 7.093421 TGCATGTTTTCAGAAATTGGGATCATA 60.093 33.333 0.00 0.00 0.00 2.15
1855 1889 7.765360 GCATGTTTTCAGAAATTGGGATCATAA 59.235 33.333 0.00 0.00 0.00 1.90
1856 1890 9.656040 CATGTTTTCAGAAATTGGGATCATAAA 57.344 29.630 0.00 0.00 0.00 1.40
1867 1901 9.617523 AAATTGGGATCATAAATTTTCATCACC 57.382 29.630 0.00 1.40 31.18 4.02
1868 1902 7.976414 TTGGGATCATAAATTTTCATCACCT 57.024 32.000 0.00 0.00 0.00 4.00
1869 1903 7.976414 TGGGATCATAAATTTTCATCACCTT 57.024 32.000 0.00 0.00 0.00 3.50
1870 1904 8.010733 TGGGATCATAAATTTTCATCACCTTC 57.989 34.615 0.00 0.00 0.00 3.46
1871 1905 7.840716 TGGGATCATAAATTTTCATCACCTTCT 59.159 33.333 0.00 0.00 0.00 2.85
1872 1906 9.354673 GGGATCATAAATTTTCATCACCTTCTA 57.645 33.333 0.00 0.00 0.00 2.10
1879 1913 7.410120 AATTTTCATCACCTTCTAATCACCC 57.590 36.000 0.00 0.00 0.00 4.61
1880 1914 5.779241 TTTCATCACCTTCTAATCACCCT 57.221 39.130 0.00 0.00 0.00 4.34
1881 1915 5.359194 TTCATCACCTTCTAATCACCCTC 57.641 43.478 0.00 0.00 0.00 4.30
1882 1916 3.711704 TCATCACCTTCTAATCACCCTCC 59.288 47.826 0.00 0.00 0.00 4.30
1883 1917 2.478292 TCACCTTCTAATCACCCTCCC 58.522 52.381 0.00 0.00 0.00 4.30
1884 1918 1.490910 CACCTTCTAATCACCCTCCCC 59.509 57.143 0.00 0.00 0.00 4.81
1885 1919 1.141185 CCTTCTAATCACCCTCCCCC 58.859 60.000 0.00 0.00 0.00 5.40
1901 1935 2.008242 CCCCCTCTCTCTCTATGTGG 57.992 60.000 0.00 0.00 0.00 4.17
1902 1936 1.337118 CCCCTCTCTCTCTATGTGGC 58.663 60.000 0.00 0.00 0.00 5.01
1903 1937 1.337118 CCCTCTCTCTCTATGTGGCC 58.663 60.000 0.00 0.00 0.00 5.36
1904 1938 1.133199 CCCTCTCTCTCTATGTGGCCT 60.133 57.143 3.32 0.00 0.00 5.19
1905 1939 2.238521 CCTCTCTCTCTATGTGGCCTC 58.761 57.143 3.32 0.00 0.00 4.70
1906 1940 1.879380 CTCTCTCTCTATGTGGCCTCG 59.121 57.143 3.32 0.00 0.00 4.63
1907 1941 1.213182 TCTCTCTCTATGTGGCCTCGT 59.787 52.381 3.32 4.10 0.00 4.18
1908 1942 1.606668 CTCTCTCTATGTGGCCTCGTC 59.393 57.143 3.32 0.00 0.00 4.20
1909 1943 1.213182 TCTCTCTATGTGGCCTCGTCT 59.787 52.381 3.32 0.00 0.00 4.18
1910 1944 1.606668 CTCTCTATGTGGCCTCGTCTC 59.393 57.143 3.32 0.00 0.00 3.36
1911 1945 0.671251 CTCTATGTGGCCTCGTCTCC 59.329 60.000 3.32 0.00 0.00 3.71
1912 1946 0.259065 TCTATGTGGCCTCGTCTCCT 59.741 55.000 3.32 0.00 0.00 3.69
1913 1947 1.493446 TCTATGTGGCCTCGTCTCCTA 59.507 52.381 3.32 0.00 0.00 2.94
1914 1948 1.609555 CTATGTGGCCTCGTCTCCTAC 59.390 57.143 3.32 0.00 0.00 3.18
1915 1949 1.043673 ATGTGGCCTCGTCTCCTACC 61.044 60.000 3.32 0.00 0.00 3.18
1916 1950 2.043248 TGGCCTCGTCTCCTACCC 60.043 66.667 3.32 0.00 0.00 3.69
1917 1951 2.838693 GGCCTCGTCTCCTACCCC 60.839 72.222 0.00 0.00 0.00 4.95
1918 1952 2.279408 GCCTCGTCTCCTACCCCT 59.721 66.667 0.00 0.00 0.00 4.79
1919 1953 1.381463 GCCTCGTCTCCTACCCCTT 60.381 63.158 0.00 0.00 0.00 3.95
1920 1954 0.976590 GCCTCGTCTCCTACCCCTTT 60.977 60.000 0.00 0.00 0.00 3.11
1921 1955 1.112950 CCTCGTCTCCTACCCCTTTC 58.887 60.000 0.00 0.00 0.00 2.62
1922 1956 1.342175 CCTCGTCTCCTACCCCTTTCT 60.342 57.143 0.00 0.00 0.00 2.52
1923 1957 2.025898 CTCGTCTCCTACCCCTTTCTC 58.974 57.143 0.00 0.00 0.00 2.87
1924 1958 1.639628 TCGTCTCCTACCCCTTTCTCT 59.360 52.381 0.00 0.00 0.00 3.10
1925 1959 2.042706 TCGTCTCCTACCCCTTTCTCTT 59.957 50.000 0.00 0.00 0.00 2.85
1926 1960 2.427812 CGTCTCCTACCCCTTTCTCTTC 59.572 54.545 0.00 0.00 0.00 2.87
1927 1961 3.715287 GTCTCCTACCCCTTTCTCTTCT 58.285 50.000 0.00 0.00 0.00 2.85
1928 1962 3.702548 GTCTCCTACCCCTTTCTCTTCTC 59.297 52.174 0.00 0.00 0.00 2.87
1929 1963 3.336997 TCTCCTACCCCTTTCTCTTCTCA 59.663 47.826 0.00 0.00 0.00 3.27
1930 1964 4.097418 CTCCTACCCCTTTCTCTTCTCAA 58.903 47.826 0.00 0.00 0.00 3.02
1931 1965 4.699994 TCCTACCCCTTTCTCTTCTCAAT 58.300 43.478 0.00 0.00 0.00 2.57
1932 1966 4.717280 TCCTACCCCTTTCTCTTCTCAATC 59.283 45.833 0.00 0.00 0.00 2.67
1933 1967 4.141597 CCTACCCCTTTCTCTTCTCAATCC 60.142 50.000 0.00 0.00 0.00 3.01
1934 1968 2.237392 ACCCCTTTCTCTTCTCAATCCG 59.763 50.000 0.00 0.00 0.00 4.18
1935 1969 2.420687 CCCCTTTCTCTTCTCAATCCGG 60.421 54.545 0.00 0.00 0.00 5.14
1936 1970 2.501723 CCCTTTCTCTTCTCAATCCGGA 59.498 50.000 6.61 6.61 0.00 5.14
1937 1971 3.135530 CCCTTTCTCTTCTCAATCCGGAT 59.864 47.826 12.38 12.38 0.00 4.18
1938 1972 4.376146 CCTTTCTCTTCTCAATCCGGATC 58.624 47.826 19.43 0.00 0.00 3.36
1939 1973 4.376146 CTTTCTCTTCTCAATCCGGATCC 58.624 47.826 19.43 0.00 0.00 3.36
1940 1974 3.032265 TCTCTTCTCAATCCGGATCCA 57.968 47.619 19.43 6.24 0.00 3.41
1941 1975 3.581101 TCTCTTCTCAATCCGGATCCAT 58.419 45.455 19.43 0.00 0.00 3.41
1942 1976 3.323115 TCTCTTCTCAATCCGGATCCATG 59.677 47.826 19.43 13.01 0.00 3.66
1943 1977 2.369860 TCTTCTCAATCCGGATCCATGG 59.630 50.000 19.43 4.97 0.00 3.66
1944 1978 2.101640 TCTCAATCCGGATCCATGGA 57.898 50.000 19.43 18.88 38.95 3.41
1945 1979 2.624495 TCTCAATCCGGATCCATGGAT 58.376 47.619 27.66 27.66 46.89 3.41
1946 1980 2.568956 TCTCAATCCGGATCCATGGATC 59.431 50.000 37.12 37.12 44.16 3.36
1954 1988 0.403271 GATCCATGGATCCTGTGGGG 59.597 60.000 35.69 15.57 43.71 4.96
1955 1989 1.723128 ATCCATGGATCCTGTGGGGC 61.723 60.000 26.57 0.00 33.78 5.80
1956 1990 2.389449 CCATGGATCCTGTGGGGCT 61.389 63.158 22.21 0.00 34.39 5.19
1957 1991 1.150081 CATGGATCCTGTGGGGCTC 59.850 63.158 14.23 0.00 34.39 4.70
1958 1992 2.446848 ATGGATCCTGTGGGGCTCG 61.447 63.158 14.23 0.00 34.39 5.03
1959 1993 3.866582 GGATCCTGTGGGGCTCGG 61.867 72.222 3.84 0.00 34.39 4.63
1960 1994 3.866582 GATCCTGTGGGGCTCGGG 61.867 72.222 0.00 0.00 34.39 5.14
1966 2000 4.344865 GTGGGGCTCGGGCTCAAA 62.345 66.667 10.65 0.00 41.58 2.69
1967 2001 4.033776 TGGGGCTCGGGCTCAAAG 62.034 66.667 10.65 0.00 41.58 2.77
1968 2002 4.035102 GGGGCTCGGGCTCAAAGT 62.035 66.667 10.65 0.00 41.58 2.66
1969 2003 2.747855 GGGCTCGGGCTCAAAGTG 60.748 66.667 7.48 0.00 39.12 3.16
1970 2004 2.747855 GGCTCGGGCTCAAAGTGG 60.748 66.667 7.48 0.00 38.73 4.00
1971 2005 2.032681 GCTCGGGCTCAAAGTGGT 59.967 61.111 0.00 0.00 35.22 4.16
1972 2006 2.035442 GCTCGGGCTCAAAGTGGTC 61.035 63.158 0.00 0.00 35.22 4.02
1973 2007 1.738099 CTCGGGCTCAAAGTGGTCG 60.738 63.158 0.00 0.00 0.00 4.79
1974 2008 2.030562 CGGGCTCAAAGTGGTCGT 59.969 61.111 0.00 0.00 0.00 4.34
1975 2009 2.027625 CGGGCTCAAAGTGGTCGTC 61.028 63.158 0.00 0.00 0.00 4.20
1976 2010 2.027625 GGGCTCAAAGTGGTCGTCG 61.028 63.158 0.00 0.00 0.00 5.12
1977 2011 1.300697 GGCTCAAAGTGGTCGTCGT 60.301 57.895 0.00 0.00 0.00 4.34
1978 2012 1.557443 GGCTCAAAGTGGTCGTCGTG 61.557 60.000 0.00 0.00 0.00 4.35
1979 2013 1.853319 CTCAAAGTGGTCGTCGTGC 59.147 57.895 0.00 0.00 0.00 5.34
1980 2014 1.557443 CTCAAAGTGGTCGTCGTGCC 61.557 60.000 0.00 0.00 0.00 5.01
1981 2015 2.280592 AAAGTGGTCGTCGTGCCC 60.281 61.111 6.24 0.09 0.00 5.36
1982 2016 2.803817 AAAGTGGTCGTCGTGCCCT 61.804 57.895 6.24 1.77 0.00 5.19
1983 2017 2.710724 AAAGTGGTCGTCGTGCCCTC 62.711 60.000 6.24 0.89 0.00 4.30
2007 2041 3.443045 GGTGGGGCGTCAATGCTG 61.443 66.667 0.00 0.00 34.52 4.41
2008 2042 4.120331 GTGGGGCGTCAATGCTGC 62.120 66.667 0.00 0.00 34.52 5.25
2013 2047 3.266964 GCGTCAATGCTGCCAAGA 58.733 55.556 0.00 0.00 0.00 3.02
2014 2048 1.136147 GCGTCAATGCTGCCAAGAG 59.864 57.895 0.00 0.00 0.00 2.85
2015 2049 1.136147 CGTCAATGCTGCCAAGAGC 59.864 57.895 0.00 0.00 44.14 4.09
2016 2050 1.303799 CGTCAATGCTGCCAAGAGCT 61.304 55.000 0.00 0.00 44.23 4.09
2017 2051 0.170561 GTCAATGCTGCCAAGAGCTG 59.829 55.000 0.00 0.00 44.23 4.24
2022 2056 3.441290 CTGCCAAGAGCTGCCTGC 61.441 66.667 0.00 0.00 44.23 4.85
2052 2086 2.759783 CTGAACCTCAGGACGCATG 58.240 57.895 0.00 0.00 40.71 4.06
2053 2087 0.742281 CTGAACCTCAGGACGCATGG 60.742 60.000 0.00 0.00 40.71 3.66
2054 2088 2.045926 AACCTCAGGACGCATGGC 60.046 61.111 0.00 0.00 0.00 4.40
2055 2089 2.527951 GAACCTCAGGACGCATGGCT 62.528 60.000 0.00 0.00 0.00 4.75
2056 2090 2.513204 CCTCAGGACGCATGGCTG 60.513 66.667 0.00 0.00 0.00 4.85
2057 2091 3.200593 CTCAGGACGCATGGCTGC 61.201 66.667 0.00 0.00 45.31 5.25
2066 2100 4.051167 CATGGCTGCACCCCTCCA 62.051 66.667 0.50 0.00 37.83 3.86
2067 2101 4.052518 ATGGCTGCACCCCTCCAC 62.053 66.667 0.50 0.00 37.83 4.02
2071 2105 4.394712 CTGCACCCCTCCACGACC 62.395 72.222 0.00 0.00 0.00 4.79
2073 2107 3.948719 GCACCCCTCCACGACCAA 61.949 66.667 0.00 0.00 0.00 3.67
2074 2108 2.833227 CACCCCTCCACGACCAAA 59.167 61.111 0.00 0.00 0.00 3.28
2075 2109 1.302511 CACCCCTCCACGACCAAAG 60.303 63.158 0.00 0.00 0.00 2.77
2076 2110 2.351276 CCCCTCCACGACCAAAGG 59.649 66.667 0.00 0.00 0.00 3.11
2077 2111 2.359975 CCCTCCACGACCAAAGGC 60.360 66.667 0.00 0.00 0.00 4.35
2078 2112 2.750350 CCTCCACGACCAAAGGCT 59.250 61.111 0.00 0.00 0.00 4.58
2079 2113 1.672356 CCTCCACGACCAAAGGCTG 60.672 63.158 0.00 0.00 0.00 4.85
2080 2114 2.281484 TCCACGACCAAAGGCTGC 60.281 61.111 0.00 0.00 0.00 5.25
2081 2115 3.726517 CCACGACCAAAGGCTGCG 61.727 66.667 0.00 0.00 0.00 5.18
2082 2116 3.726517 CACGACCAAAGGCTGCGG 61.727 66.667 1.03 1.03 0.00 5.69
2122 2156 1.851304 CAAAGCTTGGGGGCAAGATA 58.149 50.000 0.00 0.00 34.26 1.98
2129 2163 2.212752 TGGGGGCAAGATAATCTCCT 57.787 50.000 0.00 0.00 0.00 3.69
2131 2165 1.777272 GGGGGCAAGATAATCTCCTGT 59.223 52.381 0.00 0.00 0.00 4.00
2132 2166 2.979678 GGGGGCAAGATAATCTCCTGTA 59.020 50.000 0.00 0.00 0.00 2.74
2175 2209 0.535102 CGGTGCCCTCAACAAGTTCT 60.535 55.000 0.00 0.00 0.00 3.01
2240 2274 1.080995 CGCTCACTCTAGTGCCAAGC 61.081 60.000 5.21 8.41 45.25 4.01
2244 2278 1.273606 TCACTCTAGTGCCAAGCAGAC 59.726 52.381 5.21 0.00 45.25 3.51
2310 2347 4.988540 TGCATTTACATCTATCACTACGCC 59.011 41.667 0.00 0.00 0.00 5.68
2327 2364 1.801178 CGCCCAGTCTTTCAGAGTTTC 59.199 52.381 0.00 0.00 0.00 2.78
2379 2416 6.868339 CCTGAATGAAAACAGTTTATCCAACC 59.132 38.462 0.00 0.00 35.77 3.77
2388 2425 8.546597 AAACAGTTTATCCAACCAATAATTGC 57.453 30.769 0.00 0.00 35.77 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 26 2.297701 GAGCTCTAGTGAGGAGGTGAG 58.702 57.143 6.43 0.00 40.90 3.51
101 103 1.187974 TCAATGGCAAGGGCTTCATG 58.812 50.000 0.00 0.00 40.87 3.07
102 104 1.551883 GTTCAATGGCAAGGGCTTCAT 59.448 47.619 0.00 0.00 40.87 2.57
169 171 4.760047 GTCGTGCTCGGGTGCCAT 62.760 66.667 8.49 0.00 37.69 4.40
178 180 1.005294 TCGGCGTTTTAGTCGTGCTC 61.005 55.000 6.85 0.00 40.52 4.26
180 182 0.179258 CTTCGGCGTTTTAGTCGTGC 60.179 55.000 6.85 0.00 40.52 5.34
317 319 2.733218 CGTTTGCTCCAGCGTCGA 60.733 61.111 0.00 0.00 45.83 4.20
452 454 0.387929 ACAGCGTTTTCCTGACGAGA 59.612 50.000 0.33 0.00 42.82 4.04
465 467 1.280710 TGTGATTGGGGATAACAGCGT 59.719 47.619 0.00 0.00 0.00 5.07
466 468 2.036958 TGTGATTGGGGATAACAGCG 57.963 50.000 0.00 0.00 0.00 5.18
467 469 3.620488 TCTTGTGATTGGGGATAACAGC 58.380 45.455 0.00 0.00 30.61 4.40
468 470 6.125029 AGATTCTTGTGATTGGGGATAACAG 58.875 40.000 0.00 0.00 30.61 3.16
469 471 6.078456 AGATTCTTGTGATTGGGGATAACA 57.922 37.500 0.00 0.00 0.00 2.41
470 472 7.410120 AAAGATTCTTGTGATTGGGGATAAC 57.590 36.000 0.00 0.00 0.00 1.89
471 473 9.713684 AATAAAGATTCTTGTGATTGGGGATAA 57.286 29.630 0.00 0.00 0.00 1.75
472 474 9.354673 GAATAAAGATTCTTGTGATTGGGGATA 57.645 33.333 0.00 0.00 38.78 2.59
473 475 7.840716 TGAATAAAGATTCTTGTGATTGGGGAT 59.159 33.333 0.00 0.00 41.87 3.85
474 476 7.181361 TGAATAAAGATTCTTGTGATTGGGGA 58.819 34.615 0.00 0.00 41.87 4.81
475 477 7.408756 TGAATAAAGATTCTTGTGATTGGGG 57.591 36.000 0.00 0.00 41.87 4.96
476 478 7.485913 CGTTGAATAAAGATTCTTGTGATTGGG 59.514 37.037 0.00 0.00 41.87 4.12
477 479 7.008628 GCGTTGAATAAAGATTCTTGTGATTGG 59.991 37.037 0.00 0.00 41.87 3.16
478 480 7.752239 AGCGTTGAATAAAGATTCTTGTGATTG 59.248 33.333 0.00 0.00 41.87 2.67
662 680 3.470888 CCGTCAGGGAGGCCGATT 61.471 66.667 0.00 0.00 38.47 3.34
688 709 4.473520 CCTCCGTGCGGCTGGAAT 62.474 66.667 13.98 0.00 32.89 3.01
704 726 2.414806 GGTCTCGTTGTTTTCCTCTCC 58.585 52.381 0.00 0.00 0.00 3.71
741 763 0.958876 GCTACAAACCGTTGAGGGGG 60.959 60.000 0.00 0.00 46.96 5.40
742 764 0.250553 TGCTACAAACCGTTGAGGGG 60.251 55.000 0.00 0.00 46.96 4.79
743 765 1.737793 GATGCTACAAACCGTTGAGGG 59.262 52.381 0.00 0.00 46.96 4.30
745 767 1.201921 GCGATGCTACAAACCGTTGAG 60.202 52.381 0.00 0.00 38.20 3.02
746 768 0.793861 GCGATGCTACAAACCGTTGA 59.206 50.000 0.00 0.00 38.20 3.18
747 769 0.515127 TGCGATGCTACAAACCGTTG 59.485 50.000 0.00 0.00 40.84 4.10
748 770 0.515564 GTGCGATGCTACAAACCGTT 59.484 50.000 0.00 0.00 0.00 4.44
749 771 0.601576 TGTGCGATGCTACAAACCGT 60.602 50.000 0.00 0.00 0.00 4.83
750 772 0.179225 GTGTGCGATGCTACAAACCG 60.179 55.000 0.00 0.00 0.00 4.44
751 773 0.871722 TGTGTGCGATGCTACAAACC 59.128 50.000 0.00 0.00 0.00 3.27
752 774 2.900122 ATGTGTGCGATGCTACAAAC 57.100 45.000 0.00 0.00 32.49 2.93
753 775 3.913548 AAATGTGTGCGATGCTACAAA 57.086 38.095 0.00 0.00 32.49 2.83
754 776 4.260172 CGATAAATGTGTGCGATGCTACAA 60.260 41.667 0.00 0.00 32.49 2.41
755 777 3.245048 CGATAAATGTGTGCGATGCTACA 59.755 43.478 0.00 2.89 33.02 2.74
756 778 3.245284 ACGATAAATGTGTGCGATGCTAC 59.755 43.478 0.00 0.00 0.00 3.58
757 779 3.453424 ACGATAAATGTGTGCGATGCTA 58.547 40.909 0.00 0.00 0.00 3.49
758 780 2.279741 ACGATAAATGTGTGCGATGCT 58.720 42.857 0.00 0.00 0.00 3.79
759 781 2.629022 GACGATAAATGTGTGCGATGC 58.371 47.619 0.00 0.00 0.00 3.91
800 822 1.066787 TGTAAATCGACGTGGCCATCA 60.067 47.619 9.72 0.00 0.00 3.07
820 842 2.436646 CTTCATTCCCGCGGCACT 60.437 61.111 22.85 0.00 0.00 4.40
854 876 0.595053 ATTCGTGCGCTCGACCATAG 60.595 55.000 31.47 3.04 39.58 2.23
855 877 0.179121 AATTCGTGCGCTCGACCATA 60.179 50.000 31.47 18.82 39.58 2.74
856 878 1.447838 AATTCGTGCGCTCGACCAT 60.448 52.632 31.47 21.17 39.58 3.55
908 930 4.699522 GACGGTGGGTGTGAGGGC 62.700 72.222 0.00 0.00 0.00 5.19
909 931 2.450479 GAAGACGGTGGGTGTGAGGG 62.450 65.000 0.00 0.00 0.00 4.30
910 932 1.004918 GAAGACGGTGGGTGTGAGG 60.005 63.158 0.00 0.00 0.00 3.86
911 933 1.004918 GGAAGACGGTGGGTGTGAG 60.005 63.158 0.00 0.00 0.00 3.51
912 934 1.458777 AGGAAGACGGTGGGTGTGA 60.459 57.895 0.00 0.00 0.00 3.58
913 935 1.004918 GAGGAAGACGGTGGGTGTG 60.005 63.158 0.00 0.00 0.00 3.82
914 936 2.214920 GGAGGAAGACGGTGGGTGT 61.215 63.158 0.00 0.00 0.00 4.16
921 943 1.611519 CCTAGCTAGGAGGAAGACGG 58.388 60.000 32.79 3.86 46.63 4.79
927 949 2.798103 TCCTAACCCTAGCTAGGAGGA 58.202 52.381 36.80 33.69 46.63 3.71
990 1021 3.493303 GGGGACATGGAGAGGGGC 61.493 72.222 0.00 0.00 0.00 5.80
1007 1038 1.001503 AGGAGGTGGAGCTCAGGAG 59.998 63.158 17.19 0.00 0.00 3.69
1082 1113 0.317269 CGCAGTTTGTGGCAGTTCAG 60.317 55.000 0.00 0.00 0.00 3.02
1096 1127 4.008933 GTGTCCCTCTGCCGCAGT 62.009 66.667 19.77 0.00 32.61 4.40
1101 1132 2.711922 ATCGACGTGTCCCTCTGCC 61.712 63.158 0.00 0.00 0.00 4.85
1161 1192 0.806492 GAAAAGACCCGGAGCTAGCG 60.806 60.000 9.55 0.00 0.00 4.26
1163 1194 2.498078 AGAAGAAAAGACCCGGAGCTAG 59.502 50.000 0.73 0.00 0.00 3.42
1171 1202 5.795972 AGCACTAAGTAGAAGAAAAGACCC 58.204 41.667 0.00 0.00 0.00 4.46
1172 1203 6.693466 AGAGCACTAAGTAGAAGAAAAGACC 58.307 40.000 0.00 0.00 0.00 3.85
1185 1216 6.013554 AGAGGAGATAAGAGAGCACTAAGT 57.986 41.667 0.00 0.00 0.00 2.24
1195 1226 5.711698 AGGTTAGGGAAGAGGAGATAAGAG 58.288 45.833 0.00 0.00 0.00 2.85
1220 1251 1.434773 TCCCCTCCAGCTAGCATAGAT 59.565 52.381 18.83 0.00 42.77 1.98
1221 1252 0.860457 TCCCCTCCAGCTAGCATAGA 59.140 55.000 18.83 9.25 42.77 1.98
1232 1263 4.880426 GCCTCCCGATCCCCTCCA 62.880 72.222 0.00 0.00 0.00 3.86
1328 1361 4.119862 GTTGAGTAGCTTGGCGATGATAA 58.880 43.478 0.00 0.00 0.00 1.75
1330 1363 2.169352 AGTTGAGTAGCTTGGCGATGAT 59.831 45.455 0.00 0.00 0.00 2.45
1333 1366 1.469940 CGAGTTGAGTAGCTTGGCGAT 60.470 52.381 0.00 0.00 0.00 4.58
1390 1423 2.433318 GGAGACGCCACTGCTGAC 60.433 66.667 0.00 0.00 36.34 3.51
1441 1475 8.143193 ACATGAGAAGAGAGTGCTGATAATTAG 58.857 37.037 0.00 0.00 0.00 1.73
1463 1497 7.121168 TCAAAGCTAAGATACCCTCAAAACATG 59.879 37.037 0.00 0.00 0.00 3.21
1502 1536 5.779771 AGCAAAATCTCTCCCCAAATAAACA 59.220 36.000 0.00 0.00 0.00 2.83
1610 1644 5.128499 TCTTCTTGGATGGCAAAGACAAAAA 59.872 36.000 0.00 0.00 32.26 1.94
1611 1645 4.648762 TCTTCTTGGATGGCAAAGACAAAA 59.351 37.500 0.00 0.00 32.26 2.44
1612 1646 4.214310 TCTTCTTGGATGGCAAAGACAAA 58.786 39.130 0.00 0.00 32.26 2.83
1613 1647 3.831323 TCTTCTTGGATGGCAAAGACAA 58.169 40.909 0.00 0.00 32.26 3.18
1614 1648 3.507162 TCTTCTTGGATGGCAAAGACA 57.493 42.857 0.00 0.00 32.26 3.41
1615 1649 4.279420 ACTTTCTTCTTGGATGGCAAAGAC 59.721 41.667 0.00 0.00 32.26 3.01
1616 1650 4.473444 ACTTTCTTCTTGGATGGCAAAGA 58.527 39.130 0.00 0.00 0.00 2.52
1617 1651 4.861102 ACTTTCTTCTTGGATGGCAAAG 57.139 40.909 0.00 0.00 0.00 2.77
1618 1652 5.596361 TGTAACTTTCTTCTTGGATGGCAAA 59.404 36.000 0.00 0.00 0.00 3.68
1619 1653 5.136828 TGTAACTTTCTTCTTGGATGGCAA 58.863 37.500 0.00 0.00 0.00 4.52
1620 1654 4.724399 TGTAACTTTCTTCTTGGATGGCA 58.276 39.130 0.00 0.00 0.00 4.92
1621 1655 5.904362 ATGTAACTTTCTTCTTGGATGGC 57.096 39.130 0.00 0.00 0.00 4.40
1622 1656 7.978982 CAGTATGTAACTTTCTTCTTGGATGG 58.021 38.462 0.00 0.00 35.76 3.51
1641 1675 1.123928 GAGGAGGTGGGGACAGTATG 58.876 60.000 0.00 0.00 44.46 2.39
1642 1676 0.031010 GGAGGAGGTGGGGACAGTAT 60.031 60.000 0.00 0.00 44.46 2.12
1643 1677 1.153695 AGGAGGAGGTGGGGACAGTA 61.154 60.000 0.00 0.00 44.46 2.74
1644 1678 2.049792 AAGGAGGAGGTGGGGACAGT 62.050 60.000 0.00 0.00 44.46 3.55
1645 1679 0.042731 TAAGGAGGAGGTGGGGACAG 59.957 60.000 0.00 0.00 44.46 3.51
1646 1680 0.722676 ATAAGGAGGAGGTGGGGACA 59.277 55.000 0.00 0.00 38.70 4.02
1647 1681 2.789323 TATAAGGAGGAGGTGGGGAC 57.211 55.000 0.00 0.00 0.00 4.46
1648 1682 5.650167 ATAATATAAGGAGGAGGTGGGGA 57.350 43.478 0.00 0.00 0.00 4.81
1649 1683 8.407313 AATAATAATATAAGGAGGAGGTGGGG 57.593 38.462 0.00 0.00 0.00 4.96
1665 1699 9.788960 CTGTCTGCGTCAGCTATAATAATAATA 57.211 33.333 0.00 0.00 45.42 0.98
1666 1700 8.307483 ACTGTCTGCGTCAGCTATAATAATAAT 58.693 33.333 0.00 0.00 45.42 1.28
1667 1701 7.658261 ACTGTCTGCGTCAGCTATAATAATAA 58.342 34.615 0.00 0.00 45.42 1.40
1668 1702 7.215719 ACTGTCTGCGTCAGCTATAATAATA 57.784 36.000 0.00 0.00 45.42 0.98
1669 1703 6.090483 ACTGTCTGCGTCAGCTATAATAAT 57.910 37.500 0.00 0.00 45.42 1.28
1670 1704 5.515797 ACTGTCTGCGTCAGCTATAATAA 57.484 39.130 0.00 0.00 45.42 1.40
1671 1705 5.067283 TCAACTGTCTGCGTCAGCTATAATA 59.933 40.000 0.00 0.00 45.42 0.98
1676 1710 0.958822 TCAACTGTCTGCGTCAGCTA 59.041 50.000 0.00 0.00 45.42 3.32
1686 1720 4.025040 TGATGCAAGGAATCAACTGTCT 57.975 40.909 0.00 0.00 31.17 3.41
1726 1760 5.808042 TGAACATAGAGTCTACACGGTAC 57.192 43.478 0.85 0.00 0.00 3.34
1727 1761 5.356190 CCTTGAACATAGAGTCTACACGGTA 59.644 44.000 0.85 0.00 0.00 4.02
1728 1762 4.158025 CCTTGAACATAGAGTCTACACGGT 59.842 45.833 0.85 0.00 0.00 4.83
1729 1763 4.398358 TCCTTGAACATAGAGTCTACACGG 59.602 45.833 0.85 3.62 0.00 4.94
1730 1764 5.562506 TCCTTGAACATAGAGTCTACACG 57.437 43.478 0.85 0.00 0.00 4.49
1731 1765 8.035394 TGAAATCCTTGAACATAGAGTCTACAC 58.965 37.037 0.85 0.00 0.00 2.90
1732 1766 8.134202 TGAAATCCTTGAACATAGAGTCTACA 57.866 34.615 0.85 0.00 0.00 2.74
1733 1767 8.254508 ACTGAAATCCTTGAACATAGAGTCTAC 58.745 37.037 0.85 0.00 0.00 2.59
1734 1768 8.367660 ACTGAAATCCTTGAACATAGAGTCTA 57.632 34.615 1.45 1.45 0.00 2.59
1735 1769 7.251321 ACTGAAATCCTTGAACATAGAGTCT 57.749 36.000 0.00 0.00 0.00 3.24
1736 1770 9.092876 CTTACTGAAATCCTTGAACATAGAGTC 57.907 37.037 0.00 0.00 0.00 3.36
1737 1771 8.043710 CCTTACTGAAATCCTTGAACATAGAGT 58.956 37.037 0.00 0.00 0.00 3.24
1738 1772 8.260818 TCCTTACTGAAATCCTTGAACATAGAG 58.739 37.037 0.00 0.00 0.00 2.43
1739 1773 8.146053 TCCTTACTGAAATCCTTGAACATAGA 57.854 34.615 0.00 0.00 0.00 1.98
1740 1774 8.792830 TTCCTTACTGAAATCCTTGAACATAG 57.207 34.615 0.00 0.00 0.00 2.23
1741 1775 9.231297 CTTTCCTTACTGAAATCCTTGAACATA 57.769 33.333 0.00 0.00 33.98 2.29
1742 1776 7.309438 GCTTTCCTTACTGAAATCCTTGAACAT 60.309 37.037 0.00 0.00 33.98 2.71
1743 1777 6.016276 GCTTTCCTTACTGAAATCCTTGAACA 60.016 38.462 0.00 0.00 33.98 3.18
1744 1778 6.207614 AGCTTTCCTTACTGAAATCCTTGAAC 59.792 38.462 0.00 0.00 33.98 3.18
1745 1779 6.306987 AGCTTTCCTTACTGAAATCCTTGAA 58.693 36.000 0.00 0.00 33.98 2.69
1746 1780 5.880901 AGCTTTCCTTACTGAAATCCTTGA 58.119 37.500 0.00 0.00 33.98 3.02
1747 1781 6.094186 GGTAGCTTTCCTTACTGAAATCCTTG 59.906 42.308 0.00 0.00 33.98 3.61
1748 1782 6.181190 GGTAGCTTTCCTTACTGAAATCCTT 58.819 40.000 0.00 0.00 33.98 3.36
1749 1783 5.250774 TGGTAGCTTTCCTTACTGAAATCCT 59.749 40.000 0.00 0.00 33.98 3.24
1750 1784 5.497474 TGGTAGCTTTCCTTACTGAAATCC 58.503 41.667 0.00 0.00 33.98 3.01
1751 1785 6.823689 TCATGGTAGCTTTCCTTACTGAAATC 59.176 38.462 0.00 0.00 33.98 2.17
1752 1786 6.721318 TCATGGTAGCTTTCCTTACTGAAAT 58.279 36.000 0.00 0.00 33.98 2.17
1753 1787 6.121776 TCATGGTAGCTTTCCTTACTGAAA 57.878 37.500 0.00 0.00 33.42 2.69
1754 1788 5.755409 TCATGGTAGCTTTCCTTACTGAA 57.245 39.130 0.00 0.00 0.00 3.02
1755 1789 5.663106 AGATCATGGTAGCTTTCCTTACTGA 59.337 40.000 0.00 0.00 0.00 3.41
1756 1790 5.757320 CAGATCATGGTAGCTTTCCTTACTG 59.243 44.000 0.00 1.93 0.00 2.74
1757 1791 5.163258 CCAGATCATGGTAGCTTTCCTTACT 60.163 44.000 0.00 0.00 44.91 2.24
1758 1792 5.059833 CCAGATCATGGTAGCTTTCCTTAC 58.940 45.833 0.00 0.00 44.91 2.34
1759 1793 5.296151 CCAGATCATGGTAGCTTTCCTTA 57.704 43.478 0.00 0.00 44.91 2.69
1760 1794 4.162040 CCAGATCATGGTAGCTTTCCTT 57.838 45.455 0.00 0.00 44.91 3.36
1761 1795 3.853355 CCAGATCATGGTAGCTTTCCT 57.147 47.619 0.00 0.00 44.91 3.36
1772 1806 4.160642 TGTTCCATCCTTCCAGATCATG 57.839 45.455 0.00 0.00 0.00 3.07
1773 1807 4.868172 TTGTTCCATCCTTCCAGATCAT 57.132 40.909 0.00 0.00 0.00 2.45
1774 1808 4.018141 ACATTGTTCCATCCTTCCAGATCA 60.018 41.667 0.00 0.00 0.00 2.92
1775 1809 4.530875 ACATTGTTCCATCCTTCCAGATC 58.469 43.478 0.00 0.00 0.00 2.75
1776 1810 4.598036 ACATTGTTCCATCCTTCCAGAT 57.402 40.909 0.00 0.00 0.00 2.90
1777 1811 4.081406 CAACATTGTTCCATCCTTCCAGA 58.919 43.478 0.00 0.00 0.00 3.86
1778 1812 4.081406 TCAACATTGTTCCATCCTTCCAG 58.919 43.478 0.00 0.00 0.00 3.86
1779 1813 4.111255 TCAACATTGTTCCATCCTTCCA 57.889 40.909 0.00 0.00 0.00 3.53
1780 1814 6.322201 ACATATCAACATTGTTCCATCCTTCC 59.678 38.462 0.00 0.00 0.00 3.46
1781 1815 7.148018 ACACATATCAACATTGTTCCATCCTTC 60.148 37.037 0.00 0.00 0.00 3.46
1782 1816 6.664816 ACACATATCAACATTGTTCCATCCTT 59.335 34.615 0.00 0.00 0.00 3.36
1783 1817 6.095860 CACACATATCAACATTGTTCCATCCT 59.904 38.462 0.00 0.00 0.00 3.24
1784 1818 6.127647 ACACACATATCAACATTGTTCCATCC 60.128 38.462 0.00 0.00 0.00 3.51
1785 1819 6.855836 ACACACATATCAACATTGTTCCATC 58.144 36.000 0.00 0.00 0.00 3.51
1786 1820 6.839124 ACACACATATCAACATTGTTCCAT 57.161 33.333 0.00 0.00 0.00 3.41
1787 1821 7.609532 TCATACACACATATCAACATTGTTCCA 59.390 33.333 0.00 0.00 0.00 3.53
1788 1822 7.984391 TCATACACACATATCAACATTGTTCC 58.016 34.615 0.00 0.00 0.00 3.62
1791 1825 8.623903 GGAATCATACACACATATCAACATTGT 58.376 33.333 0.00 0.00 0.00 2.71
1792 1826 8.623030 TGGAATCATACACACATATCAACATTG 58.377 33.333 0.00 0.00 0.00 2.82
1793 1827 8.750515 TGGAATCATACACACATATCAACATT 57.249 30.769 0.00 0.00 0.00 2.71
1794 1828 8.750515 TTGGAATCATACACACATATCAACAT 57.249 30.769 0.00 0.00 0.00 2.71
1795 1829 8.572855 TTTGGAATCATACACACATATCAACA 57.427 30.769 0.00 0.00 0.00 3.33
1796 1830 9.454585 CATTTGGAATCATACACACATATCAAC 57.545 33.333 0.00 0.00 0.00 3.18
1797 1831 8.631797 CCATTTGGAATCATACACACATATCAA 58.368 33.333 0.00 0.00 37.39 2.57
1798 1832 7.255555 GCCATTTGGAATCATACACACATATCA 60.256 37.037 0.00 0.00 37.39 2.15
1799 1833 7.086376 GCCATTTGGAATCATACACACATATC 58.914 38.462 0.00 0.00 37.39 1.63
1800 1834 6.015180 GGCCATTTGGAATCATACACACATAT 60.015 38.462 0.00 0.00 37.39 1.78
1801 1835 5.301551 GGCCATTTGGAATCATACACACATA 59.698 40.000 0.00 0.00 37.39 2.29
1802 1836 4.099881 GGCCATTTGGAATCATACACACAT 59.900 41.667 0.00 0.00 37.39 3.21
1803 1837 3.446873 GGCCATTTGGAATCATACACACA 59.553 43.478 0.00 0.00 37.39 3.72
1804 1838 3.701040 AGGCCATTTGGAATCATACACAC 59.299 43.478 5.01 0.00 37.39 3.82
1805 1839 3.979911 AGGCCATTTGGAATCATACACA 58.020 40.909 5.01 0.00 37.39 3.72
1806 1840 5.111293 CAAAGGCCATTTGGAATCATACAC 58.889 41.667 5.01 0.00 43.88 2.90
1807 1841 5.341872 CAAAGGCCATTTGGAATCATACA 57.658 39.130 5.01 0.00 43.88 2.29
1808 1842 4.382901 TGCAAAGGCCATTTGGAATCATAC 60.383 41.667 21.58 8.95 45.07 2.39
1809 1843 3.773667 TGCAAAGGCCATTTGGAATCATA 59.226 39.130 21.58 0.00 45.07 2.15
1810 1844 2.572556 TGCAAAGGCCATTTGGAATCAT 59.427 40.909 21.58 0.00 45.07 2.45
1811 1845 1.976404 TGCAAAGGCCATTTGGAATCA 59.024 42.857 21.58 12.44 45.07 2.57
1812 1846 2.766345 TGCAAAGGCCATTTGGAATC 57.234 45.000 21.58 10.70 45.07 2.52
1818 1852 3.816523 CTGAAAACATGCAAAGGCCATTT 59.183 39.130 5.01 0.00 40.13 2.32
1819 1853 3.071312 TCTGAAAACATGCAAAGGCCATT 59.929 39.130 5.01 0.00 40.13 3.16
1820 1854 2.633967 TCTGAAAACATGCAAAGGCCAT 59.366 40.909 5.01 0.00 40.13 4.40
1821 1855 2.037901 TCTGAAAACATGCAAAGGCCA 58.962 42.857 5.01 0.00 40.13 5.36
1822 1856 2.818130 TCTGAAAACATGCAAAGGCC 57.182 45.000 0.00 0.00 40.13 5.19
1823 1857 5.445845 CAATTTCTGAAAACATGCAAAGGC 58.554 37.500 6.95 0.00 41.68 4.35
1824 1858 5.049267 CCCAATTTCTGAAAACATGCAAAGG 60.049 40.000 6.95 1.17 0.00 3.11
1825 1859 5.759273 TCCCAATTTCTGAAAACATGCAAAG 59.241 36.000 6.95 0.00 0.00 2.77
1826 1860 5.678583 TCCCAATTTCTGAAAACATGCAAA 58.321 33.333 6.95 0.00 0.00 3.68
1827 1861 5.287674 TCCCAATTTCTGAAAACATGCAA 57.712 34.783 6.95 0.00 0.00 4.08
1828 1862 4.952071 TCCCAATTTCTGAAAACATGCA 57.048 36.364 6.95 0.00 0.00 3.96
1829 1863 5.481105 TGATCCCAATTTCTGAAAACATGC 58.519 37.500 6.95 0.00 0.00 4.06
1830 1864 9.656040 TTTATGATCCCAATTTCTGAAAACATG 57.344 29.630 6.95 6.89 0.00 3.21
1841 1875 9.617523 GGTGATGAAAATTTATGATCCCAATTT 57.382 29.630 0.00 0.00 32.62 1.82
1842 1876 8.995577 AGGTGATGAAAATTTATGATCCCAATT 58.004 29.630 0.00 0.00 0.00 2.32
1843 1877 8.557304 AGGTGATGAAAATTTATGATCCCAAT 57.443 30.769 0.00 0.00 0.00 3.16
1844 1878 7.976414 AGGTGATGAAAATTTATGATCCCAA 57.024 32.000 0.00 0.00 0.00 4.12
1845 1879 7.840716 AGAAGGTGATGAAAATTTATGATCCCA 59.159 33.333 0.00 0.00 0.00 4.37
1846 1880 8.242729 AGAAGGTGATGAAAATTTATGATCCC 57.757 34.615 0.00 0.00 0.00 3.85
1853 1887 8.966868 GGGTGATTAGAAGGTGATGAAAATTTA 58.033 33.333 0.00 0.00 0.00 1.40
1854 1888 7.675619 AGGGTGATTAGAAGGTGATGAAAATTT 59.324 33.333 0.00 0.00 0.00 1.82
1855 1889 7.184862 AGGGTGATTAGAAGGTGATGAAAATT 58.815 34.615 0.00 0.00 0.00 1.82
1856 1890 6.735556 AGGGTGATTAGAAGGTGATGAAAAT 58.264 36.000 0.00 0.00 0.00 1.82
1857 1891 6.139679 AGGGTGATTAGAAGGTGATGAAAA 57.860 37.500 0.00 0.00 0.00 2.29
1858 1892 5.339200 GGAGGGTGATTAGAAGGTGATGAAA 60.339 44.000 0.00 0.00 0.00 2.69
1859 1893 4.164221 GGAGGGTGATTAGAAGGTGATGAA 59.836 45.833 0.00 0.00 0.00 2.57
1860 1894 3.711704 GGAGGGTGATTAGAAGGTGATGA 59.288 47.826 0.00 0.00 0.00 2.92
1861 1895 3.181450 GGGAGGGTGATTAGAAGGTGATG 60.181 52.174 0.00 0.00 0.00 3.07
1862 1896 3.049344 GGGAGGGTGATTAGAAGGTGAT 58.951 50.000 0.00 0.00 0.00 3.06
1863 1897 2.478292 GGGAGGGTGATTAGAAGGTGA 58.522 52.381 0.00 0.00 0.00 4.02
1864 1898 1.490910 GGGGAGGGTGATTAGAAGGTG 59.509 57.143 0.00 0.00 0.00 4.00
1865 1899 1.628327 GGGGGAGGGTGATTAGAAGGT 60.628 57.143 0.00 0.00 0.00 3.50
1866 1900 1.141185 GGGGGAGGGTGATTAGAAGG 58.859 60.000 0.00 0.00 0.00 3.46
1882 1916 2.008242 CCACATAGAGAGAGAGGGGG 57.992 60.000 0.00 0.00 0.00 5.40
1883 1917 1.337118 GCCACATAGAGAGAGAGGGG 58.663 60.000 0.00 0.00 0.00 4.79
1884 1918 1.133199 AGGCCACATAGAGAGAGAGGG 60.133 57.143 5.01 0.00 0.00 4.30
1885 1919 2.238521 GAGGCCACATAGAGAGAGAGG 58.761 57.143 5.01 0.00 0.00 3.69
1886 1920 1.879380 CGAGGCCACATAGAGAGAGAG 59.121 57.143 5.01 0.00 0.00 3.20
1887 1921 1.213182 ACGAGGCCACATAGAGAGAGA 59.787 52.381 5.01 0.00 0.00 3.10
1888 1922 1.606668 GACGAGGCCACATAGAGAGAG 59.393 57.143 5.01 0.00 0.00 3.20
1889 1923 1.213182 AGACGAGGCCACATAGAGAGA 59.787 52.381 5.01 0.00 0.00 3.10
1890 1924 1.606668 GAGACGAGGCCACATAGAGAG 59.393 57.143 5.01 0.00 0.00 3.20
1891 1925 1.681538 GAGACGAGGCCACATAGAGA 58.318 55.000 5.01 0.00 0.00 3.10
1892 1926 0.671251 GGAGACGAGGCCACATAGAG 59.329 60.000 5.01 0.00 0.00 2.43
1893 1927 0.259065 AGGAGACGAGGCCACATAGA 59.741 55.000 5.01 0.00 0.00 1.98
1894 1928 1.609555 GTAGGAGACGAGGCCACATAG 59.390 57.143 5.01 0.00 0.00 2.23
1895 1929 1.688772 GTAGGAGACGAGGCCACATA 58.311 55.000 5.01 0.00 0.00 2.29
1896 1930 1.043673 GGTAGGAGACGAGGCCACAT 61.044 60.000 5.01 0.00 0.00 3.21
1897 1931 1.681327 GGTAGGAGACGAGGCCACA 60.681 63.158 5.01 0.00 0.00 4.17
1898 1932 2.424733 GGGTAGGAGACGAGGCCAC 61.425 68.421 5.01 0.00 0.00 5.01
1899 1933 2.043248 GGGTAGGAGACGAGGCCA 60.043 66.667 5.01 0.00 0.00 5.36
1900 1934 2.838693 GGGGTAGGAGACGAGGCC 60.839 72.222 0.00 0.00 0.00 5.19
1901 1935 0.976590 AAAGGGGTAGGAGACGAGGC 60.977 60.000 0.00 0.00 0.00 4.70
1902 1936 1.112950 GAAAGGGGTAGGAGACGAGG 58.887 60.000 0.00 0.00 0.00 4.63
1903 1937 2.025898 GAGAAAGGGGTAGGAGACGAG 58.974 57.143 0.00 0.00 0.00 4.18
1904 1938 1.639628 AGAGAAAGGGGTAGGAGACGA 59.360 52.381 0.00 0.00 0.00 4.20
1905 1939 2.146920 AGAGAAAGGGGTAGGAGACG 57.853 55.000 0.00 0.00 0.00 4.18
1906 1940 3.702548 GAGAAGAGAAAGGGGTAGGAGAC 59.297 52.174 0.00 0.00 0.00 3.36
1907 1941 3.336997 TGAGAAGAGAAAGGGGTAGGAGA 59.663 47.826 0.00 0.00 0.00 3.71
1908 1942 3.714144 TGAGAAGAGAAAGGGGTAGGAG 58.286 50.000 0.00 0.00 0.00 3.69
1909 1943 3.847042 TGAGAAGAGAAAGGGGTAGGA 57.153 47.619 0.00 0.00 0.00 2.94
1910 1944 4.141597 GGATTGAGAAGAGAAAGGGGTAGG 60.142 50.000 0.00 0.00 0.00 3.18
1911 1945 4.442192 CGGATTGAGAAGAGAAAGGGGTAG 60.442 50.000 0.00 0.00 0.00 3.18
1912 1946 3.451178 CGGATTGAGAAGAGAAAGGGGTA 59.549 47.826 0.00 0.00 0.00 3.69
1913 1947 2.237392 CGGATTGAGAAGAGAAAGGGGT 59.763 50.000 0.00 0.00 0.00 4.95
1914 1948 2.420687 CCGGATTGAGAAGAGAAAGGGG 60.421 54.545 0.00 0.00 0.00 4.79
1915 1949 2.501723 TCCGGATTGAGAAGAGAAAGGG 59.498 50.000 0.00 0.00 0.00 3.95
1916 1950 3.895232 TCCGGATTGAGAAGAGAAAGG 57.105 47.619 0.00 0.00 0.00 3.11
1917 1951 4.141846 TGGATCCGGATTGAGAAGAGAAAG 60.142 45.833 20.22 0.00 0.00 2.62
1918 1952 3.774766 TGGATCCGGATTGAGAAGAGAAA 59.225 43.478 20.22 0.00 0.00 2.52
1919 1953 3.374764 TGGATCCGGATTGAGAAGAGAA 58.625 45.455 20.22 0.00 0.00 2.87
1920 1954 3.032265 TGGATCCGGATTGAGAAGAGA 57.968 47.619 20.22 0.00 0.00 3.10
1921 1955 3.556633 CCATGGATCCGGATTGAGAAGAG 60.557 52.174 20.22 3.79 0.00 2.85
1922 1956 2.369860 CCATGGATCCGGATTGAGAAGA 59.630 50.000 20.22 0.00 0.00 2.87
1923 1957 2.369860 TCCATGGATCCGGATTGAGAAG 59.630 50.000 20.22 6.69 0.00 2.85
1924 1958 2.407562 TCCATGGATCCGGATTGAGAA 58.592 47.619 20.22 3.17 0.00 2.87
1925 1959 2.101640 TCCATGGATCCGGATTGAGA 57.898 50.000 20.22 9.60 0.00 3.27
1926 1960 2.983229 GATCCATGGATCCGGATTGAG 58.017 52.381 35.69 9.11 42.21 3.02
1936 1970 1.723128 GCCCCACAGGATCCATGGAT 61.723 60.000 27.66 27.66 38.24 3.41
1937 1971 2.386100 GCCCCACAGGATCCATGGA 61.386 63.158 28.51 18.88 38.24 3.41
1938 1972 2.196776 GCCCCACAGGATCCATGG 59.803 66.667 22.66 22.66 38.24 3.66
1939 1973 1.150081 GAGCCCCACAGGATCCATG 59.850 63.158 15.82 11.73 46.01 3.66
1940 1974 3.666122 GAGCCCCACAGGATCCAT 58.334 61.111 15.82 0.00 46.01 3.41
1949 1983 4.344865 TTTGAGCCCGAGCCCCAC 62.345 66.667 0.00 0.00 41.25 4.61
1950 1984 4.033776 CTTTGAGCCCGAGCCCCA 62.034 66.667 0.00 0.00 41.25 4.96
1951 1985 4.035102 ACTTTGAGCCCGAGCCCC 62.035 66.667 0.00 0.00 41.25 5.80
1952 1986 2.747855 CACTTTGAGCCCGAGCCC 60.748 66.667 0.00 0.00 41.25 5.19
1953 1987 2.747855 CCACTTTGAGCCCGAGCC 60.748 66.667 0.00 0.00 41.25 4.70
1954 1988 2.032681 ACCACTTTGAGCCCGAGC 59.967 61.111 0.00 0.00 40.32 5.03
1955 1989 1.738099 CGACCACTTTGAGCCCGAG 60.738 63.158 0.00 0.00 0.00 4.63
1956 1990 2.342279 CGACCACTTTGAGCCCGA 59.658 61.111 0.00 0.00 0.00 5.14
1957 1991 2.027625 GACGACCACTTTGAGCCCG 61.028 63.158 0.00 0.00 0.00 6.13
1958 1992 2.027625 CGACGACCACTTTGAGCCC 61.028 63.158 0.00 0.00 0.00 5.19
1959 1993 1.300697 ACGACGACCACTTTGAGCC 60.301 57.895 0.00 0.00 0.00 4.70
1960 1994 1.853319 CACGACGACCACTTTGAGC 59.147 57.895 0.00 0.00 0.00 4.26
1961 1995 1.557443 GGCACGACGACCACTTTGAG 61.557 60.000 0.00 0.00 0.00 3.02
1962 1996 1.593209 GGCACGACGACCACTTTGA 60.593 57.895 0.00 0.00 0.00 2.69
1963 1997 2.604174 GGGCACGACGACCACTTTG 61.604 63.158 0.00 0.00 0.00 2.77
1964 1998 2.280592 GGGCACGACGACCACTTT 60.281 61.111 0.00 0.00 0.00 2.66
1965 1999 3.222354 GAGGGCACGACGACCACTT 62.222 63.158 0.00 0.00 0.00 3.16
1966 2000 3.681835 GAGGGCACGACGACCACT 61.682 66.667 0.00 0.00 0.00 4.00
1990 2024 3.443045 CAGCATTGACGCCCCACC 61.443 66.667 0.00 0.00 0.00 4.61
1991 2025 4.120331 GCAGCATTGACGCCCCAC 62.120 66.667 0.00 0.00 0.00 4.61
1994 2028 3.346631 CTTGGCAGCATTGACGCCC 62.347 63.158 12.61 0.00 45.63 6.13
1995 2029 2.180017 CTTGGCAGCATTGACGCC 59.820 61.111 9.24 9.24 46.43 5.68
1996 2030 1.136147 CTCTTGGCAGCATTGACGC 59.864 57.895 0.00 0.00 33.87 5.19
1997 2031 1.136147 GCTCTTGGCAGCATTGACG 59.864 57.895 0.00 0.00 39.43 4.35
1998 2032 0.170561 CAGCTCTTGGCAGCATTGAC 59.829 55.000 0.00 0.00 42.40 3.18
1999 2033 2.563297 CAGCTCTTGGCAGCATTGA 58.437 52.632 0.00 0.00 42.40 2.57
2034 2068 0.742281 CCATGCGTCCTGAGGTTCAG 60.742 60.000 0.00 0.00 43.91 3.02
2035 2069 1.296392 CCATGCGTCCTGAGGTTCA 59.704 57.895 0.00 0.00 0.00 3.18
2036 2070 2.109126 GCCATGCGTCCTGAGGTTC 61.109 63.158 0.00 0.00 0.00 3.62
2037 2071 2.045926 GCCATGCGTCCTGAGGTT 60.046 61.111 0.00 0.00 0.00 3.50
2038 2072 3.005539 AGCCATGCGTCCTGAGGT 61.006 61.111 0.00 0.00 0.00 3.85
2039 2073 2.513204 CAGCCATGCGTCCTGAGG 60.513 66.667 0.00 0.00 0.00 3.86
2040 2074 3.200593 GCAGCCATGCGTCCTGAG 61.201 66.667 7.18 0.00 43.87 3.35
2049 2083 4.051167 TGGAGGGGTGCAGCCATG 62.051 66.667 34.28 0.00 39.65 3.66
2050 2084 4.052518 GTGGAGGGGTGCAGCCAT 62.053 66.667 34.28 29.73 39.65 4.40
2054 2088 4.394712 GGTCGTGGAGGGGTGCAG 62.395 72.222 0.00 0.00 0.00 4.41
2056 2090 3.485346 TTTGGTCGTGGAGGGGTGC 62.485 63.158 0.00 0.00 0.00 5.01
2057 2091 1.302511 CTTTGGTCGTGGAGGGGTG 60.303 63.158 0.00 0.00 0.00 4.61
2058 2092 2.526046 CCTTTGGTCGTGGAGGGGT 61.526 63.158 0.00 0.00 0.00 4.95
2059 2093 2.351276 CCTTTGGTCGTGGAGGGG 59.649 66.667 0.00 0.00 0.00 4.79
2060 2094 2.359975 GCCTTTGGTCGTGGAGGG 60.360 66.667 0.00 0.00 0.00 4.30
2061 2095 1.672356 CAGCCTTTGGTCGTGGAGG 60.672 63.158 0.00 0.00 0.00 4.30
2062 2096 2.328099 GCAGCCTTTGGTCGTGGAG 61.328 63.158 0.00 0.00 0.00 3.86
2063 2097 2.281484 GCAGCCTTTGGTCGTGGA 60.281 61.111 0.00 0.00 0.00 4.02
2064 2098 3.726517 CGCAGCCTTTGGTCGTGG 61.727 66.667 0.00 0.00 0.00 4.94
2065 2099 3.726517 CCGCAGCCTTTGGTCGTG 61.727 66.667 0.00 0.00 0.00 4.35
2091 2125 2.507769 GCTTTGGCTGCGATTGGC 60.508 61.111 0.00 0.00 43.96 4.52
2122 2156 1.972660 GCCAGGCCGTACAGGAGATT 61.973 60.000 0.00 0.00 45.00 2.40
2175 2209 0.605319 GACTTCACATCCCCGTGCAA 60.605 55.000 0.00 0.00 36.80 4.08
2210 2244 2.887568 GTGAGCGCCATCTGACCG 60.888 66.667 2.29 0.00 0.00 4.79
2213 2247 1.028130 CTAGAGTGAGCGCCATCTGA 58.972 55.000 2.29 0.00 0.00 3.27
2215 2249 3.199290 ACTAGAGTGAGCGCCATCT 57.801 52.632 2.29 5.06 0.00 2.90
2240 2274 1.724429 GCAGGAGCTCAAGAAGTCTG 58.276 55.000 17.19 12.33 37.91 3.51
2310 2347 5.586243 TCAAACTGAAACTCTGAAAGACTGG 59.414 40.000 0.00 0.00 38.67 4.00
2327 2364 7.706607 TGTAATCATCGGAGTATCTTCAAACTG 59.293 37.037 0.00 0.00 33.73 3.16
2379 2416 1.577134 CGAACAACGCCGCAATTATTG 59.423 47.619 0.00 0.00 34.51 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.