Multiple sequence alignment - TraesCS4A01G224300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G224300 chr4A 100.000 3507 0 0 1 3507 532076311 532072805 0.000000e+00 6477.0
1 TraesCS4A01G224300 chr1A 96.504 944 32 1 2564 3507 105280348 105281290 0.000000e+00 1559.0
2 TraesCS4A01G224300 chr2A 96.497 942 31 2 2566 3507 497980401 497981340 0.000000e+00 1555.0
3 TraesCS4A01G224300 chr7A 96.387 941 32 1 2566 3504 134510788 134511728 0.000000e+00 1548.0
4 TraesCS4A01G224300 chr7A 96.379 939 31 2 2569 3507 37844208 37843273 0.000000e+00 1543.0
5 TraesCS4A01G224300 chr7A 96.174 941 36 0 2567 3507 36142351 36141411 0.000000e+00 1539.0
6 TraesCS4A01G224300 chr7A 96.178 942 34 1 2566 3507 705534978 705535917 0.000000e+00 1539.0
7 TraesCS4A01G224300 chr6A 96.387 941 32 1 2569 3507 600976584 600975644 0.000000e+00 1548.0
8 TraesCS4A01G224300 chr5A 96.387 941 32 1 2569 3507 338929127 338928187 0.000000e+00 1548.0
9 TraesCS4A01G224300 chr5A 96.273 939 34 1 2569 3507 697707324 697708261 0.000000e+00 1539.0
10 TraesCS4A01G224300 chr4D 86.811 1198 78 39 1156 2331 64402495 64403634 0.000000e+00 1264.0
11 TraesCS4A01G224300 chr4D 90.237 676 36 13 497 1147 64401770 64402440 0.000000e+00 856.0
12 TraesCS4A01G224300 chr4D 82.278 158 5 3 375 509 64401583 64401740 7.950000e-22 115.0
13 TraesCS4A01G224300 chr4B 87.050 1112 72 31 1227 2331 94950119 94951165 0.000000e+00 1190.0
14 TraesCS4A01G224300 chr4B 91.796 451 35 2 1 450 94944986 94945435 8.260000e-176 627.0
15 TraesCS4A01G224300 chr4B 86.621 441 24 11 505 913 94947370 94947807 4.130000e-124 455.0
16 TraesCS4A01G224300 chr4B 93.689 206 6 3 905 1103 94949484 94949689 5.690000e-78 302.0
17 TraesCS4A01G224300 chr4B 93.902 82 5 0 2488 2569 94955779 94955860 1.320000e-24 124.0
18 TraesCS4A01G224300 chr4B 88.506 87 3 3 1156 1235 94950007 94950093 8.010000e-17 99.0
19 TraesCS4A01G224300 chr4B 95.745 47 0 2 1102 1147 94949905 94949950 1.350000e-09 75.0
20 TraesCS4A01G224300 chr4B 100.000 30 0 0 480 509 94945920 94945949 4.890000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G224300 chr4A 532072805 532076311 3506 True 6477.000000 6477 100.000000 1 3507 1 chr4A.!!$R1 3506
1 TraesCS4A01G224300 chr1A 105280348 105281290 942 False 1559.000000 1559 96.504000 2564 3507 1 chr1A.!!$F1 943
2 TraesCS4A01G224300 chr2A 497980401 497981340 939 False 1555.000000 1555 96.497000 2566 3507 1 chr2A.!!$F1 941
3 TraesCS4A01G224300 chr7A 134510788 134511728 940 False 1548.000000 1548 96.387000 2566 3504 1 chr7A.!!$F1 938
4 TraesCS4A01G224300 chr7A 37843273 37844208 935 True 1543.000000 1543 96.379000 2569 3507 1 chr7A.!!$R2 938
5 TraesCS4A01G224300 chr7A 36141411 36142351 940 True 1539.000000 1539 96.174000 2567 3507 1 chr7A.!!$R1 940
6 TraesCS4A01G224300 chr7A 705534978 705535917 939 False 1539.000000 1539 96.178000 2566 3507 1 chr7A.!!$F2 941
7 TraesCS4A01G224300 chr6A 600975644 600976584 940 True 1548.000000 1548 96.387000 2569 3507 1 chr6A.!!$R1 938
8 TraesCS4A01G224300 chr5A 338928187 338929127 940 True 1548.000000 1548 96.387000 2569 3507 1 chr5A.!!$R1 938
9 TraesCS4A01G224300 chr5A 697707324 697708261 937 False 1539.000000 1539 96.273000 2569 3507 1 chr5A.!!$F1 938
10 TraesCS4A01G224300 chr4D 64401583 64403634 2051 False 745.000000 1264 86.442000 375 2331 3 chr4D.!!$F1 1956
11 TraesCS4A01G224300 chr4B 94944986 94951165 6179 False 400.642857 1190 91.915286 1 2331 7 chr4B.!!$F2 2330

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
218 220 0.108138 CAGAGGTAGCGGTGGAAAGG 60.108 60.0 0.00 0.00 0.00 3.11 F
1769 5691 0.179145 CAGATTACTTCGTCGGCCGT 60.179 55.0 27.15 7.03 37.94 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2144 6067 0.179292 CGAGTTTACGTTTGTCGGCG 60.179 55.0 0.0 0.0 44.69 6.46 R
3095 7032 0.170116 CGAGAGCGAGCAAGAAGACT 59.830 55.0 0.0 0.0 40.82 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.341030 TCTCATACAAGACAATCACCATCAAT 58.659 34.615 0.00 0.00 0.00 2.57
31 32 8.125978 ACAAGACAATCACCATCAATACAATT 57.874 30.769 0.00 0.00 0.00 2.32
42 43 9.770097 CACCATCAATACAATTAGAGATGTAGT 57.230 33.333 0.00 0.00 35.64 2.73
86 87 6.884472 TGAGGGTCTGAACTTGGATAAATA 57.116 37.500 0.00 0.00 0.00 1.40
92 93 7.065923 GGGTCTGAACTTGGATAAATACTTGTC 59.934 40.741 0.00 0.00 0.00 3.18
122 123 4.711399 CACCCAATCTGATTCTCTATGCA 58.289 43.478 0.00 0.00 0.00 3.96
123 124 5.314529 CACCCAATCTGATTCTCTATGCAT 58.685 41.667 3.79 3.79 0.00 3.96
127 128 6.817641 CCCAATCTGATTCTCTATGCATACTC 59.182 42.308 1.16 0.00 0.00 2.59
148 149 5.649395 ACTCCATCCCATGATTATTATTGCG 59.351 40.000 0.00 0.00 0.00 4.85
171 172 1.160989 ATTTACACCGACAATGCGCA 58.839 45.000 14.96 14.96 0.00 6.09
186 187 0.317020 GCGCAACCACTGAACACTTC 60.317 55.000 0.30 0.00 0.00 3.01
200 201 2.214216 ACTTCGGTGGGCTACTGCA 61.214 57.895 4.73 0.00 41.91 4.41
214 216 2.283604 TGCAGAGGTAGCGGTGGA 60.284 61.111 0.00 0.00 33.85 4.02
218 220 0.108138 CAGAGGTAGCGGTGGAAAGG 60.108 60.000 0.00 0.00 0.00 3.11
224 226 2.497273 GGTAGCGGTGGAAAGGTTACTA 59.503 50.000 0.00 0.00 0.00 1.82
249 251 0.663153 GCCGGAGCCAACAATGATAC 59.337 55.000 5.05 0.00 0.00 2.24
261 263 2.742053 ACAATGATACGCACTTGTCCAC 59.258 45.455 0.00 0.00 0.00 4.02
283 285 3.952811 GTGAAGTCTCACCACCGC 58.047 61.111 0.00 0.00 45.41 5.68
294 296 1.078426 ACCACCGCCATTGACTAGC 60.078 57.895 0.00 0.00 0.00 3.42
301 303 1.933853 CGCCATTGACTAGCTAACACC 59.066 52.381 0.00 0.00 0.00 4.16
321 323 2.735134 CCTGGTTTTACGACAGTAGCAC 59.265 50.000 0.00 0.00 33.87 4.40
329 331 2.618053 ACGACAGTAGCACTAAATGGC 58.382 47.619 0.00 0.00 0.00 4.40
330 332 1.933853 CGACAGTAGCACTAAATGGCC 59.066 52.381 0.00 0.00 0.00 5.36
512 2395 2.203877 TCGGGGCTAGGGTTGTGT 60.204 61.111 0.00 0.00 0.00 3.72
515 2398 1.602771 GGGGCTAGGGTTGTGTCTC 59.397 63.158 0.00 0.00 0.00 3.36
531 2414 2.102420 TGTCTCTTCTTTCTTGGCGACA 59.898 45.455 0.00 0.00 39.83 4.35
606 2489 7.175467 TGAATATGGCAATATGCTAAGTTGGAG 59.825 37.037 0.53 0.00 44.28 3.86
641 2526 8.615878 TCATTTCTTCCTCGAGATTAAAACAA 57.384 30.769 15.71 0.00 0.00 2.83
746 2638 7.823310 ACAACATTTTGCATTATCAATGGCTAA 59.177 29.630 0.00 0.00 39.31 3.09
747 2639 8.832521 CAACATTTTGCATTATCAATGGCTAAT 58.167 29.630 0.00 0.00 39.31 1.73
809 2701 9.606631 AAGTGATAAATGAAGAAGAGACCATAC 57.393 33.333 0.00 0.00 0.00 2.39
879 2796 2.203139 CAGTTCACCACGGTGGCA 60.203 61.111 26.62 11.16 42.67 4.92
952 4554 0.591659 GGCGAGGTCCAGTTTGTTTC 59.408 55.000 0.00 0.00 0.00 2.78
1015 4623 5.803967 GCTTTCTGTCTGCTGGATATTTTTG 59.196 40.000 0.00 0.00 0.00 2.44
1090 4699 3.465403 CCTCGTGGGCTCCTCCTG 61.465 72.222 0.00 0.00 34.39 3.86
1130 4957 1.334869 CGGACTGAATTATTGCCAGCC 59.665 52.381 0.00 0.00 0.00 4.85
1131 4958 2.659428 GGACTGAATTATTGCCAGCCT 58.341 47.619 0.00 0.00 0.00 4.58
1147 4974 1.931007 GCCTGGGGGAAAGCATCTCT 61.931 60.000 0.00 0.00 33.58 3.10
1148 4975 0.182299 CCTGGGGGAAAGCATCTCTC 59.818 60.000 0.00 0.00 33.58 3.20
1150 4977 1.140652 CTGGGGGAAAGCATCTCTCTC 59.859 57.143 0.00 0.00 26.46 3.20
1151 4978 0.472044 GGGGGAAAGCATCTCTCTCC 59.528 60.000 0.00 0.00 0.00 3.71
1169 5044 1.435515 CCTCTAGCAGCGACCTGAC 59.564 63.158 0.00 0.00 41.77 3.51
1221 5101 0.249657 CGGGAGAGAATAGGCACAGC 60.250 60.000 0.00 0.00 0.00 4.40
1303 5222 2.123982 CAGGGCAATGCTCCTCCC 60.124 66.667 11.46 1.10 39.05 4.30
1355 5274 1.134753 CTCGCTCTGCTCTCTGTGAAT 59.865 52.381 0.00 0.00 0.00 2.57
1389 5308 0.247736 ACTCGTCAATCCACCTCTGC 59.752 55.000 0.00 0.00 0.00 4.26
1430 5349 7.831690 TGGATTAATTAGCACAACCATGAGTTA 59.168 33.333 0.00 0.00 36.18 2.24
1442 5362 5.894298 ACCATGAGTTAATCTGATGCCTA 57.106 39.130 0.00 0.00 36.65 3.93
1459 5379 5.116069 TGCCTAAACAAAGATTTCGGTTC 57.884 39.130 0.00 0.00 29.27 3.62
1469 5389 0.908180 ATTTCGGTTCCCTCCCTCGT 60.908 55.000 0.00 0.00 0.00 4.18
1484 5404 1.594862 CCTCGTTTCCATCGATCTTGC 59.405 52.381 0.00 0.00 36.73 4.01
1486 5406 1.066502 TCGTTTCCATCGATCTTGCCA 60.067 47.619 0.00 0.00 32.30 4.92
1496 5418 3.262420 TCGATCTTGCCAGCTACTTTTC 58.738 45.455 0.00 0.00 0.00 2.29
1516 5438 9.301897 ACTTTTCTTGCTAAAATAGATCTGGTT 57.698 29.630 5.18 0.00 0.00 3.67
1527 5449 3.845781 AGATCTGGTTCTTGTGTGTGT 57.154 42.857 0.00 0.00 0.00 3.72
1528 5450 3.470709 AGATCTGGTTCTTGTGTGTGTG 58.529 45.455 0.00 0.00 0.00 3.82
1529 5451 2.779755 TCTGGTTCTTGTGTGTGTGT 57.220 45.000 0.00 0.00 0.00 3.72
1530 5452 2.355197 TCTGGTTCTTGTGTGTGTGTG 58.645 47.619 0.00 0.00 0.00 3.82
1531 5453 2.083774 CTGGTTCTTGTGTGTGTGTGT 58.916 47.619 0.00 0.00 0.00 3.72
1681 5603 8.299262 ACGCTAGCTTTGATTATGTTATGTAG 57.701 34.615 13.93 0.00 0.00 2.74
1682 5604 7.926555 ACGCTAGCTTTGATTATGTTATGTAGT 59.073 33.333 13.93 0.00 0.00 2.73
1683 5605 9.406828 CGCTAGCTTTGATTATGTTATGTAGTA 57.593 33.333 13.93 0.00 0.00 1.82
1688 5610 9.155053 GCTTTGATTATGTTATGTAGTAAACGC 57.845 33.333 0.00 0.00 0.00 4.84
1691 5613 8.360325 TGATTATGTTATGTAGTAAACGCTGG 57.640 34.615 0.00 0.00 0.00 4.85
1692 5614 8.198778 TGATTATGTTATGTAGTAAACGCTGGA 58.801 33.333 0.00 0.00 0.00 3.86
1693 5615 7.760131 TTATGTTATGTAGTAAACGCTGGAC 57.240 36.000 0.00 0.00 0.00 4.02
1694 5616 5.395682 TGTTATGTAGTAAACGCTGGACT 57.604 39.130 0.00 0.00 0.00 3.85
1695 5617 6.513806 TGTTATGTAGTAAACGCTGGACTA 57.486 37.500 0.00 0.00 0.00 2.59
1696 5618 6.558009 TGTTATGTAGTAAACGCTGGACTAG 58.442 40.000 0.00 0.00 0.00 2.57
1697 5619 4.650754 ATGTAGTAAACGCTGGACTAGG 57.349 45.455 0.00 0.00 0.00 3.02
1698 5620 3.689347 TGTAGTAAACGCTGGACTAGGA 58.311 45.455 0.00 0.00 0.00 2.94
1699 5621 4.275810 TGTAGTAAACGCTGGACTAGGAT 58.724 43.478 0.00 0.00 0.00 3.24
1700 5622 5.439721 TGTAGTAAACGCTGGACTAGGATA 58.560 41.667 0.00 0.00 0.00 2.59
1701 5623 6.066690 TGTAGTAAACGCTGGACTAGGATAT 58.933 40.000 0.00 0.00 0.00 1.63
1702 5624 5.455056 AGTAAACGCTGGACTAGGATATG 57.545 43.478 0.00 0.00 0.00 1.78
1703 5625 5.138276 AGTAAACGCTGGACTAGGATATGA 58.862 41.667 0.00 0.00 0.00 2.15
1704 5626 5.775701 AGTAAACGCTGGACTAGGATATGAT 59.224 40.000 0.00 0.00 0.00 2.45
1705 5627 4.792521 AACGCTGGACTAGGATATGATC 57.207 45.455 0.00 0.00 0.00 2.92
1706 5628 4.040936 ACGCTGGACTAGGATATGATCT 57.959 45.455 0.00 0.00 0.00 2.75
1707 5629 4.013728 ACGCTGGACTAGGATATGATCTC 58.986 47.826 0.00 0.00 0.00 2.75
1708 5630 3.064682 CGCTGGACTAGGATATGATCTCG 59.935 52.174 0.00 0.00 0.00 4.04
1711 5633 5.621104 GCTGGACTAGGATATGATCTCGTTG 60.621 48.000 0.00 0.00 0.00 4.10
1714 5636 5.944599 GGACTAGGATATGATCTCGTTGGTA 59.055 44.000 0.00 0.00 0.00 3.25
1716 5638 7.039923 GGACTAGGATATGATCTCGTTGGTAAA 60.040 40.741 0.00 0.00 0.00 2.01
1735 5657 9.932207 TTGGTAAATAAATCTCTGTTCGTCTTA 57.068 29.630 0.00 0.00 0.00 2.10
1745 5667 5.011090 TCTGTTCGTCTTATATGCTGCTT 57.989 39.130 0.00 0.00 0.00 3.91
1769 5691 0.179145 CAGATTACTTCGTCGGCCGT 60.179 55.000 27.15 7.03 37.94 5.68
1781 5703 4.011517 GGCCGTCCGGAGAACCAA 62.012 66.667 3.06 0.00 37.50 3.67
1782 5704 2.741211 GCCGTCCGGAGAACCAAC 60.741 66.667 3.06 0.00 37.50 3.77
1783 5705 2.431942 CCGTCCGGAGAACCAACG 60.432 66.667 3.06 2.91 37.50 4.10
1795 5717 2.280524 CCAACGGCAGAACACGGA 60.281 61.111 0.00 0.00 0.00 4.69
1797 5719 1.440938 CCAACGGCAGAACACGGAAA 61.441 55.000 0.00 0.00 0.00 3.13
1821 5743 2.822701 CGCCTAAACCGGGCTTCC 60.823 66.667 6.32 0.00 46.73 3.46
1823 5745 1.001269 GCCTAAACCGGGCTTCCTT 60.001 57.895 6.32 0.00 45.57 3.36
1842 5764 0.878416 TGCCAAATTGTACGACAGCC 59.122 50.000 0.00 0.00 0.00 4.85
1845 5767 2.151202 CCAAATTGTACGACAGCCAGT 58.849 47.619 0.00 0.00 0.00 4.00
1861 5783 7.254761 CGACAGCCAGTATATATTTCAGCAAAA 60.255 37.037 0.00 0.00 0.00 2.44
1895 5818 0.811915 ACGCTCGAGCTGTGTCTAAT 59.188 50.000 32.88 7.93 39.32 1.73
1897 5820 1.468224 CGCTCGAGCTGTGTCTAATGT 60.468 52.381 32.88 0.00 39.32 2.71
1905 5828 3.750130 AGCTGTGTCTAATGTTTCTGCTG 59.250 43.478 0.00 0.00 0.00 4.41
1912 5835 4.686554 GTCTAATGTTTCTGCTGTCGTCTT 59.313 41.667 0.00 0.00 0.00 3.01
1913 5836 3.885484 AATGTTTCTGCTGTCGTCTTG 57.115 42.857 0.00 0.00 0.00 3.02
1943 5866 2.513204 CAGCTGTCCATGCCTCGG 60.513 66.667 5.25 0.00 0.00 4.63
1948 5871 3.845259 GTCCATGCCTCGGCGGTA 61.845 66.667 7.21 0.00 45.51 4.02
2109 6032 5.192927 TCTGCTCTGTTTTTCCTTCTTTCA 58.807 37.500 0.00 0.00 0.00 2.69
2126 6049 6.992063 TCTTTCACTAGCATTTGATTCCTC 57.008 37.500 0.00 0.00 0.00 3.71
2128 6051 4.842531 TCACTAGCATTTGATTCCTCCA 57.157 40.909 0.00 0.00 0.00 3.86
2144 6067 7.441157 TGATTCCTCCATATTCATTCGTGTAAC 59.559 37.037 0.00 0.00 0.00 2.50
2183 6106 1.029947 ACGAAATTGCCATCCGTCCC 61.030 55.000 0.00 0.00 0.00 4.46
2199 6122 3.367292 CCGTCCCTGTGAAATGAAAATGG 60.367 47.826 0.00 0.00 0.00 3.16
2277 6212 4.680171 TGGCGTGTAGACATATATCGAG 57.320 45.455 0.00 0.00 28.76 4.04
2319 6254 1.790755 TTTGGCAGCTACACTACACG 58.209 50.000 0.00 0.00 0.00 4.49
2322 6257 1.352156 GGCAGCTACACTACACGCAC 61.352 60.000 0.00 0.00 0.00 5.34
2325 6260 2.734175 GCAGCTACACTACACGCACATA 60.734 50.000 0.00 0.00 0.00 2.29
2329 6264 3.975670 GCTACACTACACGCACATATCTC 59.024 47.826 0.00 0.00 0.00 2.75
2330 6265 4.261238 GCTACACTACACGCACATATCTCT 60.261 45.833 0.00 0.00 0.00 3.10
2331 6266 4.720649 ACACTACACGCACATATCTCTT 57.279 40.909 0.00 0.00 0.00 2.85
2332 6267 5.830000 ACACTACACGCACATATCTCTTA 57.170 39.130 0.00 0.00 0.00 2.10
2333 6268 6.392625 ACACTACACGCACATATCTCTTAT 57.607 37.500 0.00 0.00 0.00 1.73
2334 6269 7.506328 ACACTACACGCACATATCTCTTATA 57.494 36.000 0.00 0.00 0.00 0.98
2335 6270 8.112016 ACACTACACGCACATATCTCTTATAT 57.888 34.615 0.00 0.00 0.00 0.86
2336 6271 8.237949 ACACTACACGCACATATCTCTTATATC 58.762 37.037 0.00 0.00 0.00 1.63
2337 6272 8.454894 CACTACACGCACATATCTCTTATATCT 58.545 37.037 0.00 0.00 0.00 1.98
2338 6273 9.668497 ACTACACGCACATATCTCTTATATCTA 57.332 33.333 0.00 0.00 0.00 1.98
2341 6276 8.625651 ACACGCACATATCTCTTATATCTATCC 58.374 37.037 0.00 0.00 0.00 2.59
2342 6277 8.624776 CACGCACATATCTCTTATATCTATCCA 58.375 37.037 0.00 0.00 0.00 3.41
2343 6278 8.625651 ACGCACATATCTCTTATATCTATCCAC 58.374 37.037 0.00 0.00 0.00 4.02
2344 6279 8.624776 CGCACATATCTCTTATATCTATCCACA 58.375 37.037 0.00 0.00 0.00 4.17
2345 6280 9.964303 GCACATATCTCTTATATCTATCCACAG 57.036 37.037 0.00 0.00 0.00 3.66
2346 6281 9.964303 CACATATCTCTTATATCTATCCACAGC 57.036 37.037 0.00 0.00 0.00 4.40
2347 6282 9.706529 ACATATCTCTTATATCTATCCACAGCA 57.293 33.333 0.00 0.00 0.00 4.41
2367 6302 3.688272 CATGTTCATCTCATGCGGAAAC 58.312 45.455 0.00 0.00 36.68 2.78
2368 6303 2.777094 TGTTCATCTCATGCGGAAACA 58.223 42.857 0.00 0.00 0.00 2.83
2369 6304 3.346315 TGTTCATCTCATGCGGAAACAT 58.654 40.909 0.00 0.00 0.00 2.71
2370 6305 4.512484 TGTTCATCTCATGCGGAAACATA 58.488 39.130 0.00 0.00 0.00 2.29
2371 6306 4.571984 TGTTCATCTCATGCGGAAACATAG 59.428 41.667 0.00 0.00 0.00 2.23
2372 6307 4.670896 TCATCTCATGCGGAAACATAGA 57.329 40.909 0.00 0.00 0.00 1.98
2373 6308 5.022282 TCATCTCATGCGGAAACATAGAA 57.978 39.130 0.00 0.00 0.00 2.10
2374 6309 5.052481 TCATCTCATGCGGAAACATAGAAG 58.948 41.667 0.00 0.00 0.00 2.85
2375 6310 3.198068 TCTCATGCGGAAACATAGAAGC 58.802 45.455 0.00 0.00 0.00 3.86
2376 6311 2.938451 CTCATGCGGAAACATAGAAGCA 59.062 45.455 0.00 0.00 39.02 3.91
2377 6312 2.938451 TCATGCGGAAACATAGAAGCAG 59.062 45.455 0.00 0.00 38.04 4.24
2378 6313 2.472695 TGCGGAAACATAGAAGCAGT 57.527 45.000 0.00 0.00 0.00 4.40
2379 6314 3.603158 TGCGGAAACATAGAAGCAGTA 57.397 42.857 0.00 0.00 0.00 2.74
2380 6315 4.137116 TGCGGAAACATAGAAGCAGTAT 57.863 40.909 0.00 0.00 0.00 2.12
2381 6316 5.270893 TGCGGAAACATAGAAGCAGTATA 57.729 39.130 0.00 0.00 0.00 1.47
2382 6317 5.853936 TGCGGAAACATAGAAGCAGTATAT 58.146 37.500 0.00 0.00 0.00 0.86
2383 6318 5.926542 TGCGGAAACATAGAAGCAGTATATC 59.073 40.000 0.00 0.00 0.00 1.63
2384 6319 5.926542 GCGGAAACATAGAAGCAGTATATCA 59.073 40.000 0.00 0.00 0.00 2.15
2385 6320 6.591834 GCGGAAACATAGAAGCAGTATATCAT 59.408 38.462 0.00 0.00 0.00 2.45
2386 6321 7.412346 GCGGAAACATAGAAGCAGTATATCATG 60.412 40.741 0.00 0.00 0.00 3.07
2387 6322 7.600375 CGGAAACATAGAAGCAGTATATCATGT 59.400 37.037 0.00 0.00 0.00 3.21
2388 6323 9.929180 GGAAACATAGAAGCAGTATATCATGTA 57.071 33.333 0.00 0.00 0.00 2.29
2390 6325 9.935241 AAACATAGAAGCAGTATATCATGTAGG 57.065 33.333 0.00 0.00 0.00 3.18
2391 6326 8.885693 ACATAGAAGCAGTATATCATGTAGGA 57.114 34.615 0.00 0.00 0.00 2.94
2392 6327 8.965819 ACATAGAAGCAGTATATCATGTAGGAG 58.034 37.037 0.00 0.00 0.00 3.69
2393 6328 8.965819 CATAGAAGCAGTATATCATGTAGGAGT 58.034 37.037 0.00 0.00 0.00 3.85
2395 6330 8.343168 AGAAGCAGTATATCATGTAGGAGTAC 57.657 38.462 0.00 0.00 0.00 2.73
2396 6331 8.167392 AGAAGCAGTATATCATGTAGGAGTACT 58.833 37.037 0.00 0.00 0.00 2.73
2397 6332 8.713708 AAGCAGTATATCATGTAGGAGTACTT 57.286 34.615 0.00 0.00 0.00 2.24
2398 6333 9.809395 AAGCAGTATATCATGTAGGAGTACTTA 57.191 33.333 0.00 0.00 0.00 2.24
2399 6334 9.233649 AGCAGTATATCATGTAGGAGTACTTAC 57.766 37.037 0.00 0.00 0.00 2.34
2400 6335 8.460428 GCAGTATATCATGTAGGAGTACTTACC 58.540 40.741 0.00 0.00 0.00 2.85
2401 6336 8.958506 CAGTATATCATGTAGGAGTACTTACCC 58.041 40.741 0.00 0.00 0.00 3.69
2402 6337 8.114743 AGTATATCATGTAGGAGTACTTACCCC 58.885 40.741 0.00 0.00 0.00 4.95
2403 6338 3.559069 TCATGTAGGAGTACTTACCCCG 58.441 50.000 0.00 0.00 0.00 5.73
2404 6339 2.442236 TGTAGGAGTACTTACCCCGG 57.558 55.000 0.00 0.00 0.00 5.73
2405 6340 1.922447 TGTAGGAGTACTTACCCCGGA 59.078 52.381 0.73 0.00 0.00 5.14
2406 6341 2.311542 TGTAGGAGTACTTACCCCGGAA 59.688 50.000 0.73 0.00 0.00 4.30
2407 6342 2.629017 AGGAGTACTTACCCCGGAAA 57.371 50.000 0.73 0.00 0.00 3.13
2408 6343 2.906568 AGGAGTACTTACCCCGGAAAA 58.093 47.619 0.73 0.00 0.00 2.29
2409 6344 3.250617 AGGAGTACTTACCCCGGAAAAA 58.749 45.455 0.73 0.00 0.00 1.94
2465 6400 7.979444 ACTTTTATTTACTGTAAGCAGCAGA 57.021 32.000 8.77 0.00 46.30 4.26
2466 6401 8.391075 ACTTTTATTTACTGTAAGCAGCAGAA 57.609 30.769 8.77 0.00 46.30 3.02
2467 6402 8.507249 ACTTTTATTTACTGTAAGCAGCAGAAG 58.493 33.333 8.77 3.87 46.30 2.85
2468 6403 4.954092 ATTTACTGTAAGCAGCAGAAGC 57.046 40.909 8.77 0.00 46.30 3.86
2469 6404 3.685139 TTACTGTAAGCAGCAGAAGCT 57.315 42.857 8.77 0.00 46.55 3.74
2470 6405 2.091852 ACTGTAAGCAGCAGAAGCTC 57.908 50.000 8.77 0.00 43.99 4.09
2471 6406 1.622811 ACTGTAAGCAGCAGAAGCTCT 59.377 47.619 8.77 0.00 43.99 4.09
2472 6407 2.612471 ACTGTAAGCAGCAGAAGCTCTG 60.612 50.000 8.77 8.34 43.99 3.35
2494 6429 6.258230 TGCCAATGCAATATAGATAAGCAC 57.742 37.500 0.00 0.00 46.66 4.40
2495 6430 5.183713 TGCCAATGCAATATAGATAAGCACC 59.816 40.000 0.00 0.00 46.66 5.01
2496 6431 5.183713 GCCAATGCAATATAGATAAGCACCA 59.816 40.000 0.00 0.00 38.12 4.17
2497 6432 6.624423 GCCAATGCAATATAGATAAGCACCAG 60.624 42.308 0.00 0.00 38.12 4.00
2498 6433 6.127814 CCAATGCAATATAGATAAGCACCAGG 60.128 42.308 0.00 0.00 38.12 4.45
2499 6434 4.910195 TGCAATATAGATAAGCACCAGGG 58.090 43.478 0.00 0.00 0.00 4.45
2500 6435 4.597075 TGCAATATAGATAAGCACCAGGGA 59.403 41.667 0.00 0.00 0.00 4.20
2501 6436 5.073008 TGCAATATAGATAAGCACCAGGGAA 59.927 40.000 0.00 0.00 0.00 3.97
2502 6437 5.412904 GCAATATAGATAAGCACCAGGGAAC 59.587 44.000 0.00 0.00 0.00 3.62
2503 6438 6.533730 CAATATAGATAAGCACCAGGGAACA 58.466 40.000 0.00 0.00 0.00 3.18
2504 6439 6.763715 ATATAGATAAGCACCAGGGAACAA 57.236 37.500 0.00 0.00 0.00 2.83
2505 6440 3.356529 AGATAAGCACCAGGGAACAAG 57.643 47.619 0.00 0.00 0.00 3.16
2506 6441 2.025887 AGATAAGCACCAGGGAACAAGG 60.026 50.000 0.00 0.00 0.00 3.61
2507 6442 1.440618 TAAGCACCAGGGAACAAGGA 58.559 50.000 0.00 0.00 0.00 3.36
2508 6443 0.555769 AAGCACCAGGGAACAAGGAA 59.444 50.000 0.00 0.00 0.00 3.36
2509 6444 0.555769 AGCACCAGGGAACAAGGAAA 59.444 50.000 0.00 0.00 0.00 3.13
2510 6445 1.147817 AGCACCAGGGAACAAGGAAAT 59.852 47.619 0.00 0.00 0.00 2.17
2511 6446 1.546029 GCACCAGGGAACAAGGAAATC 59.454 52.381 0.00 0.00 0.00 2.17
2512 6447 2.819348 GCACCAGGGAACAAGGAAATCT 60.819 50.000 0.00 0.00 0.00 2.40
2513 6448 3.084786 CACCAGGGAACAAGGAAATCTC 58.915 50.000 0.00 0.00 0.00 2.75
2514 6449 2.989571 ACCAGGGAACAAGGAAATCTCT 59.010 45.455 0.00 0.00 0.00 3.10
2515 6450 3.009584 ACCAGGGAACAAGGAAATCTCTC 59.990 47.826 0.00 0.00 0.00 3.20
2516 6451 3.009473 CCAGGGAACAAGGAAATCTCTCA 59.991 47.826 0.00 0.00 0.00 3.27
2517 6452 4.324874 CCAGGGAACAAGGAAATCTCTCAT 60.325 45.833 0.00 0.00 0.00 2.90
2518 6453 5.104360 CCAGGGAACAAGGAAATCTCTCATA 60.104 44.000 0.00 0.00 0.00 2.15
2519 6454 6.418101 CAGGGAACAAGGAAATCTCTCATAA 58.582 40.000 0.00 0.00 0.00 1.90
2520 6455 6.317391 CAGGGAACAAGGAAATCTCTCATAAC 59.683 42.308 0.00 0.00 0.00 1.89
2521 6456 5.590663 GGGAACAAGGAAATCTCTCATAACC 59.409 44.000 0.00 0.00 0.00 2.85
2522 6457 6.418946 GGAACAAGGAAATCTCTCATAACCT 58.581 40.000 0.00 0.00 0.00 3.50
2523 6458 6.887002 GGAACAAGGAAATCTCTCATAACCTT 59.113 38.462 0.00 0.00 36.83 3.50
2524 6459 7.394641 GGAACAAGGAAATCTCTCATAACCTTT 59.605 37.037 0.00 0.00 34.63 3.11
2525 6460 7.693969 ACAAGGAAATCTCTCATAACCTTTG 57.306 36.000 0.00 0.00 34.63 2.77
2526 6461 6.660949 ACAAGGAAATCTCTCATAACCTTTGG 59.339 38.462 0.00 0.00 34.63 3.28
2527 6462 5.196695 AGGAAATCTCTCATAACCTTTGGC 58.803 41.667 0.00 0.00 0.00 4.52
2528 6463 4.339530 GGAAATCTCTCATAACCTTTGGCC 59.660 45.833 0.00 0.00 0.00 5.36
2529 6464 4.870021 AATCTCTCATAACCTTTGGCCT 57.130 40.909 3.32 0.00 0.00 5.19
2530 6465 3.914426 TCTCTCATAACCTTTGGCCTC 57.086 47.619 3.32 0.00 0.00 4.70
2531 6466 2.505819 TCTCTCATAACCTTTGGCCTCC 59.494 50.000 3.32 0.00 0.00 4.30
2532 6467 2.507471 CTCTCATAACCTTTGGCCTCCT 59.493 50.000 3.32 0.00 0.00 3.69
2533 6468 2.505819 TCTCATAACCTTTGGCCTCCTC 59.494 50.000 3.32 0.00 0.00 3.71
2534 6469 2.239654 CTCATAACCTTTGGCCTCCTCA 59.760 50.000 3.32 0.00 0.00 3.86
2535 6470 2.852449 TCATAACCTTTGGCCTCCTCAT 59.148 45.455 3.32 0.00 0.00 2.90
2536 6471 3.117888 TCATAACCTTTGGCCTCCTCATC 60.118 47.826 3.32 0.00 0.00 2.92
2537 6472 1.376649 AACCTTTGGCCTCCTCATCT 58.623 50.000 3.32 0.00 0.00 2.90
2538 6473 0.915364 ACCTTTGGCCTCCTCATCTC 59.085 55.000 3.32 0.00 0.00 2.75
2539 6474 0.914644 CCTTTGGCCTCCTCATCTCA 59.085 55.000 3.32 0.00 0.00 3.27
2540 6475 1.134159 CCTTTGGCCTCCTCATCTCAG 60.134 57.143 3.32 0.00 0.00 3.35
2541 6476 0.914644 TTTGGCCTCCTCATCTCAGG 59.085 55.000 3.32 0.00 34.40 3.86
2542 6477 0.984961 TTGGCCTCCTCATCTCAGGG 60.985 60.000 3.32 0.00 33.81 4.45
2543 6478 1.383803 GGCCTCCTCATCTCAGGGT 60.384 63.158 0.00 0.00 33.81 4.34
2544 6479 0.985490 GGCCTCCTCATCTCAGGGTT 60.985 60.000 0.00 0.00 33.81 4.11
2545 6480 0.915364 GCCTCCTCATCTCAGGGTTT 59.085 55.000 0.00 0.00 33.81 3.27
2546 6481 1.134250 GCCTCCTCATCTCAGGGTTTC 60.134 57.143 0.00 0.00 33.81 2.78
2547 6482 2.476199 CCTCCTCATCTCAGGGTTTCT 58.524 52.381 0.00 0.00 33.81 2.52
2548 6483 2.433970 CCTCCTCATCTCAGGGTTTCTC 59.566 54.545 0.00 0.00 33.81 2.87
2549 6484 3.373830 CTCCTCATCTCAGGGTTTCTCT 58.626 50.000 0.00 0.00 33.81 3.10
2550 6485 3.102972 TCCTCATCTCAGGGTTTCTCTG 58.897 50.000 0.00 0.00 33.81 3.35
2551 6486 2.170187 CCTCATCTCAGGGTTTCTCTGG 59.830 54.545 0.00 0.00 33.36 3.86
2552 6487 3.102972 CTCATCTCAGGGTTTCTCTGGA 58.897 50.000 0.00 0.00 33.36 3.86
2553 6488 3.517100 CTCATCTCAGGGTTTCTCTGGAA 59.483 47.826 0.00 0.00 33.36 3.53
2554 6489 3.517100 TCATCTCAGGGTTTCTCTGGAAG 59.483 47.826 0.00 0.00 32.61 3.46
2555 6490 3.260269 TCTCAGGGTTTCTCTGGAAGA 57.740 47.619 0.00 0.00 43.69 2.87
2556 6491 3.587498 TCTCAGGGTTTCTCTGGAAGAA 58.413 45.455 0.00 0.00 46.34 2.52
2557 6492 3.973973 TCTCAGGGTTTCTCTGGAAGAAA 59.026 43.478 0.00 0.00 46.34 2.52
2716 6653 4.066490 CCCATTTTGCAGCTCAATTTTGA 58.934 39.130 0.00 0.00 34.12 2.69
2765 6702 1.070105 GCCCATATTCGGCGTGGTA 59.930 57.895 6.85 0.00 36.47 3.25
2985 6922 1.352017 AGTTGATGATGCACCTGTGGA 59.648 47.619 0.00 0.00 34.81 4.02
3043 6980 0.537188 AGTTGCCGGTAGATGGTGAG 59.463 55.000 1.90 0.00 0.00 3.51
3335 7272 1.061131 CACAAATGTCGACCATCTCGC 59.939 52.381 14.12 0.00 42.62 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 8.806429 ATTGTATTGATGGTGATTGTCTTGTA 57.194 30.769 0.00 0.00 0.00 2.41
8 9 9.685276 TCTAATTGTATTGATGGTGATTGTCTT 57.315 29.630 0.00 0.00 0.00 3.01
15 16 9.987272 CTACATCTCTAATTGTATTGATGGTGA 57.013 33.333 0.00 0.00 36.56 4.02
42 43 8.330993 CCCTCAAGGTAAAATAAAACCCTACTA 58.669 37.037 0.00 0.00 36.34 1.82
44 45 7.400599 CCCTCAAGGTAAAATAAAACCCTAC 57.599 40.000 0.00 0.00 36.34 3.18
63 64 5.779241 ATTTATCCAAGTTCAGACCCTCA 57.221 39.130 0.00 0.00 0.00 3.86
64 65 6.890293 AGTATTTATCCAAGTTCAGACCCTC 58.110 40.000 0.00 0.00 0.00 4.30
69 70 7.759886 CGAGACAAGTATTTATCCAAGTTCAGA 59.240 37.037 0.00 0.00 0.00 3.27
86 87 1.227556 GGGTGCACACGAGACAAGT 60.228 57.895 20.43 0.00 0.00 3.16
92 93 0.320683 TCAGATTGGGTGCACACGAG 60.321 55.000 20.43 3.21 0.00 4.18
122 123 7.500227 CGCAATAATAATCATGGGATGGAGTAT 59.500 37.037 0.00 0.00 32.92 2.12
123 124 6.823182 CGCAATAATAATCATGGGATGGAGTA 59.177 38.462 0.00 0.00 32.92 2.59
127 128 5.882000 TCTCGCAATAATAATCATGGGATGG 59.118 40.000 0.00 0.00 34.77 3.51
148 149 3.670203 CGCATTGTCGGTGTAAATTCTC 58.330 45.455 0.00 0.00 0.00 2.87
171 172 1.663695 CACCGAAGTGTTCAGTGGTT 58.336 50.000 0.00 0.00 39.30 3.67
186 187 2.185350 CTCTGCAGTAGCCCACCG 59.815 66.667 14.67 0.00 41.13 4.94
197 198 1.476845 TTTCCACCGCTACCTCTGCA 61.477 55.000 0.00 0.00 0.00 4.41
200 201 0.544595 ACCTTTCCACCGCTACCTCT 60.545 55.000 0.00 0.00 0.00 3.69
214 216 1.478105 CCGGCGGTACTAGTAACCTTT 59.522 52.381 19.97 0.00 34.66 3.11
218 220 0.029967 GCTCCGGCGGTACTAGTAAC 59.970 60.000 27.32 7.96 0.00 2.50
224 226 4.078516 GTTGGCTCCGGCGGTACT 62.079 66.667 27.32 0.00 39.81 2.73
249 251 1.591594 ACTGACGTGGACAAGTGCG 60.592 57.895 0.00 0.00 0.00 5.34
283 285 3.055094 ACCAGGTGTTAGCTAGTCAATGG 60.055 47.826 19.87 19.87 0.00 3.16
294 296 4.374399 ACTGTCGTAAAACCAGGTGTTAG 58.626 43.478 1.94 0.00 35.67 2.34
301 303 3.650139 AGTGCTACTGTCGTAAAACCAG 58.350 45.455 0.00 0.00 0.00 4.00
321 323 4.963276 TTTTCACGATCTGGCCATTTAG 57.037 40.909 5.51 0.72 0.00 1.85
329 331 5.182001 AGTCTGGAAATTTTTCACGATCTGG 59.818 40.000 5.48 0.00 38.92 3.86
330 332 6.246420 AGTCTGGAAATTTTTCACGATCTG 57.754 37.500 5.48 0.00 38.92 2.90
393 396 3.334691 CAAGAGACGGCCAAAATCACTA 58.665 45.455 2.24 0.00 0.00 2.74
512 2395 3.469008 TTGTCGCCAAGAAAGAAGAGA 57.531 42.857 0.00 0.00 0.00 3.10
515 2398 5.043248 ACAAATTTGTCGCCAAGAAAGAAG 58.957 37.500 18.13 0.00 36.50 2.85
531 2414 5.867330 TCCTGATTGCAATTGGACAAATTT 58.133 33.333 22.98 0.00 36.28 1.82
537 2420 4.381292 CCTTTCTCCTGATTGCAATTGGAC 60.381 45.833 22.98 9.29 0.00 4.02
617 2500 9.334693 CTTTGTTTTAATCTCGAGGAAGAAATG 57.665 33.333 13.56 3.25 0.00 2.32
629 2514 6.382608 GTCCTCTTGCCTTTGTTTTAATCTC 58.617 40.000 0.00 0.00 0.00 2.75
639 2524 0.169672 CATGCGTCCTCTTGCCTTTG 59.830 55.000 0.00 0.00 0.00 2.77
641 2526 0.957395 CACATGCGTCCTCTTGCCTT 60.957 55.000 0.00 0.00 0.00 4.35
746 2638 8.823220 AAATAATACCAACTTGGCAACTCTAT 57.177 30.769 7.81 0.00 42.67 1.98
747 2639 8.644374 AAAATAATACCAACTTGGCAACTCTA 57.356 30.769 7.81 0.00 42.67 2.43
785 2677 8.948631 TGTATGGTCTCTTCTTCATTTATCAC 57.051 34.615 0.00 0.00 0.00 3.06
786 2678 9.605275 CTTGTATGGTCTCTTCTTCATTTATCA 57.395 33.333 0.00 0.00 0.00 2.15
804 2696 4.115516 CTCAGTCGTCCATTCTTGTATGG 58.884 47.826 0.00 0.00 45.34 2.74
809 2701 3.584406 AGACTCAGTCGTCCATTCTTG 57.416 47.619 0.00 0.00 37.67 3.02
857 2755 3.865477 ACCGTGGTGAACTGAACAA 57.135 47.368 0.00 0.00 0.00 2.83
879 2796 1.163420 TCGCTTGCACACGGTGAAAT 61.163 50.000 16.29 0.00 35.23 2.17
952 4554 0.385390 ACCGCAGCCAAGAAACAAAG 59.615 50.000 0.00 0.00 0.00 2.77
1015 4623 1.000955 TCGTGGAAGGTGAAGAAGAGC 59.999 52.381 0.00 0.00 0.00 4.09
1090 4699 3.564225 CCGAAAAGAATATGTAGCCACCC 59.436 47.826 0.00 0.00 0.00 4.61
1130 4957 1.140652 GAGAGAGATGCTTTCCCCCAG 59.859 57.143 0.00 0.00 0.00 4.45
1131 4958 1.207791 GAGAGAGATGCTTTCCCCCA 58.792 55.000 0.00 0.00 0.00 4.96
1147 4974 1.454111 GGTCGCTGCTAGAGGGAGA 60.454 63.158 0.00 0.00 43.93 3.71
1148 4975 1.454847 AGGTCGCTGCTAGAGGGAG 60.455 63.158 0.00 0.00 43.93 4.30
1150 4977 1.754621 TCAGGTCGCTGCTAGAGGG 60.755 63.158 0.00 0.00 35.92 4.30
1151 4978 1.034838 AGTCAGGTCGCTGCTAGAGG 61.035 60.000 0.00 0.00 0.00 3.69
1169 5044 3.442996 GGCCTGCCGTGCTATATAG 57.557 57.895 5.30 5.30 0.00 1.31
1210 5090 1.209019 CTCTCCTGTGCTGTGCCTATT 59.791 52.381 0.00 0.00 0.00 1.73
1221 5101 0.823460 GCTTCCCTCTCTCTCCTGTG 59.177 60.000 0.00 0.00 0.00 3.66
1285 5204 2.832201 GGAGGAGCATTGCCCTGC 60.832 66.667 19.44 18.32 42.62 4.85
1303 5222 0.520404 CGGATGGATACGTACCTCCG 59.480 60.000 23.21 23.21 39.60 4.63
1389 5308 4.504916 CCACCTCTGCGGCTCTCG 62.505 72.222 0.00 0.00 42.76 4.04
1398 5317 5.066505 GGTTGTGCTAATTAATCCACCTCTG 59.933 44.000 9.83 0.00 0.00 3.35
1430 5349 7.253422 CGAAATCTTTGTTTAGGCATCAGATT 58.747 34.615 0.00 0.00 33.63 2.40
1459 5379 1.144057 CGATGGAAACGAGGGAGGG 59.856 63.158 0.00 0.00 31.90 4.30
1469 5389 1.065199 AGCTGGCAAGATCGATGGAAA 60.065 47.619 0.54 0.00 0.00 3.13
1484 5404 8.268850 TCTATTTTAGCAAGAAAAGTAGCTGG 57.731 34.615 0.00 0.00 37.94 4.85
1486 5406 9.898152 AGATCTATTTTAGCAAGAAAAGTAGCT 57.102 29.630 0.00 0.00 40.92 3.32
1496 5418 8.180267 CACAAGAACCAGATCTATTTTAGCAAG 58.820 37.037 0.00 0.00 0.00 4.01
1516 5438 3.258228 CAGTACACACACACACACAAGA 58.742 45.455 0.00 0.00 0.00 3.02
1527 5449 4.146564 TGAAGTAGCCTACAGTACACACA 58.853 43.478 4.41 0.00 0.00 3.72
1528 5450 4.778534 TGAAGTAGCCTACAGTACACAC 57.221 45.455 4.41 0.00 0.00 3.82
1529 5451 4.095932 CGATGAAGTAGCCTACAGTACACA 59.904 45.833 4.41 0.00 0.00 3.72
1530 5452 4.497674 CCGATGAAGTAGCCTACAGTACAC 60.498 50.000 4.41 0.00 0.00 2.90
1531 5453 3.630769 CCGATGAAGTAGCCTACAGTACA 59.369 47.826 4.41 0.00 0.00 2.90
1630 5552 1.207329 GCACTTACCACCAGGAGTAGG 59.793 57.143 0.00 0.00 38.69 3.18
1631 5553 1.135083 CGCACTTACCACCAGGAGTAG 60.135 57.143 0.00 0.00 38.69 2.57
1681 5603 5.449107 TCATATCCTAGTCCAGCGTTTAC 57.551 43.478 0.00 0.00 0.00 2.01
1682 5604 6.010850 AGATCATATCCTAGTCCAGCGTTTA 58.989 40.000 0.00 0.00 0.00 2.01
1683 5605 4.835615 AGATCATATCCTAGTCCAGCGTTT 59.164 41.667 0.00 0.00 0.00 3.60
1684 5606 4.411927 AGATCATATCCTAGTCCAGCGTT 58.588 43.478 0.00 0.00 0.00 4.84
1686 5608 3.064682 CGAGATCATATCCTAGTCCAGCG 59.935 52.174 0.00 0.00 0.00 5.18
1688 5610 5.105957 CCAACGAGATCATATCCTAGTCCAG 60.106 48.000 0.00 0.00 0.00 3.86
1690 5612 4.767928 ACCAACGAGATCATATCCTAGTCC 59.232 45.833 0.00 0.00 0.00 3.85
1691 5613 5.968528 ACCAACGAGATCATATCCTAGTC 57.031 43.478 0.00 0.00 0.00 2.59
1692 5614 7.834881 TTTACCAACGAGATCATATCCTAGT 57.165 36.000 0.00 0.00 0.00 2.57
1700 5622 9.265901 CAGAGATTTATTTACCAACGAGATCAT 57.734 33.333 0.00 0.00 0.00 2.45
1701 5623 8.258007 ACAGAGATTTATTTACCAACGAGATCA 58.742 33.333 0.00 0.00 0.00 2.92
1702 5624 8.649973 ACAGAGATTTATTTACCAACGAGATC 57.350 34.615 0.00 0.00 0.00 2.75
1703 5625 9.099454 GAACAGAGATTTATTTACCAACGAGAT 57.901 33.333 0.00 0.00 0.00 2.75
1704 5626 7.274904 CGAACAGAGATTTATTTACCAACGAGA 59.725 37.037 0.00 0.00 0.00 4.04
1705 5627 7.063074 ACGAACAGAGATTTATTTACCAACGAG 59.937 37.037 0.00 0.00 0.00 4.18
1706 5628 6.869913 ACGAACAGAGATTTATTTACCAACGA 59.130 34.615 0.00 0.00 0.00 3.85
1707 5629 7.057149 ACGAACAGAGATTTATTTACCAACG 57.943 36.000 0.00 0.00 0.00 4.10
1708 5630 8.252964 AGACGAACAGAGATTTATTTACCAAC 57.747 34.615 0.00 0.00 0.00 3.77
1716 5638 9.416794 CAGCATATAAGACGAACAGAGATTTAT 57.583 33.333 0.00 0.00 0.00 1.40
1735 5657 7.041780 CGAAGTAATCTGGTTTAAGCAGCATAT 60.042 37.037 18.10 5.31 43.02 1.78
1737 5659 5.065218 CGAAGTAATCTGGTTTAAGCAGCAT 59.935 40.000 18.10 11.77 43.02 3.79
1739 5661 4.392138 ACGAAGTAATCTGGTTTAAGCAGC 59.608 41.667 18.10 5.49 40.97 5.25
1769 5691 3.234630 CTGCCGTTGGTTCTCCGGA 62.235 63.158 2.93 2.93 44.41 5.14
1773 5695 0.586802 GTGTTCTGCCGTTGGTTCTC 59.413 55.000 0.00 0.00 0.00 2.87
1774 5696 1.157870 CGTGTTCTGCCGTTGGTTCT 61.158 55.000 0.00 0.00 0.00 3.01
1781 5703 2.241880 CGTTTCCGTGTTCTGCCGT 61.242 57.895 0.00 0.00 0.00 5.68
1782 5704 2.549282 CGTTTCCGTGTTCTGCCG 59.451 61.111 0.00 0.00 0.00 5.69
1783 5705 2.251371 GCGTTTCCGTGTTCTGCC 59.749 61.111 0.00 0.00 36.15 4.85
1795 5717 3.729698 GTTTAGGCGCCGGCGTTT 61.730 61.111 45.02 34.69 41.24 3.60
1806 5728 1.313091 GCAAGGAAGCCCGGTTTAGG 61.313 60.000 0.00 0.00 37.58 2.69
1821 5743 2.584791 GCTGTCGTACAATTTGGCAAG 58.415 47.619 0.00 0.00 0.00 4.01
1823 5745 0.878416 GGCTGTCGTACAATTTGGCA 59.122 50.000 0.78 0.00 0.00 4.92
1895 5818 1.134521 ACCAAGACGACAGCAGAAACA 60.135 47.619 0.00 0.00 0.00 2.83
1897 5820 1.412710 AGACCAAGACGACAGCAGAAA 59.587 47.619 0.00 0.00 0.00 2.52
1905 5828 2.098443 GGAGATCAGAGACCAAGACGAC 59.902 54.545 0.00 0.00 0.00 4.34
1912 5835 1.272928 ACAGCTGGAGATCAGAGACCA 60.273 52.381 19.93 0.00 46.18 4.02
1913 5836 1.408702 GACAGCTGGAGATCAGAGACC 59.591 57.143 19.93 0.00 46.18 3.85
2109 6032 7.520798 TGAATATGGAGGAATCAAATGCTAGT 58.479 34.615 0.00 0.00 0.00 2.57
2126 6049 3.362596 CGGCGTTACACGAATGAATATGG 60.363 47.826 0.00 0.00 46.05 2.74
2128 6051 3.488310 GTCGGCGTTACACGAATGAATAT 59.512 43.478 6.85 0.00 46.05 1.28
2144 6067 0.179292 CGAGTTTACGTTTGTCGGCG 60.179 55.000 0.00 0.00 44.69 6.46
2183 6106 7.718272 AATCAACACCATTTTCATTTCACAG 57.282 32.000 0.00 0.00 0.00 3.66
2253 6188 3.918591 CGATATATGTCTACACGCCAACC 59.081 47.826 0.00 0.00 0.00 3.77
2265 6200 2.159366 CCGGTGGAGCTCGATATATGTC 60.159 54.545 7.83 0.00 0.00 3.06
2277 6212 0.953960 ACGAATTGTTCCGGTGGAGC 60.954 55.000 0.00 0.00 33.44 4.70
2319 6254 9.964303 CTGTGGATAGATATAAGAGATATGTGC 57.036 37.037 0.00 0.00 0.00 4.57
2325 6260 8.606754 ACATGCTGTGGATAGATATAAGAGAT 57.393 34.615 0.00 0.00 0.00 2.75
2329 6264 9.096160 GATGAACATGCTGTGGATAGATATAAG 57.904 37.037 0.00 0.00 0.00 1.73
2330 6265 8.819845 AGATGAACATGCTGTGGATAGATATAA 58.180 33.333 0.00 0.00 0.00 0.98
2331 6266 8.371571 AGATGAACATGCTGTGGATAGATATA 57.628 34.615 0.00 0.00 0.00 0.86
2332 6267 7.038516 TGAGATGAACATGCTGTGGATAGATAT 60.039 37.037 0.00 0.00 0.00 1.63
2333 6268 6.268387 TGAGATGAACATGCTGTGGATAGATA 59.732 38.462 0.00 0.00 0.00 1.98
2334 6269 5.071384 TGAGATGAACATGCTGTGGATAGAT 59.929 40.000 0.00 0.00 0.00 1.98
2335 6270 4.406649 TGAGATGAACATGCTGTGGATAGA 59.593 41.667 0.00 0.00 0.00 1.98
2336 6271 4.700700 TGAGATGAACATGCTGTGGATAG 58.299 43.478 0.00 0.00 0.00 2.08
2337 6272 4.758773 TGAGATGAACATGCTGTGGATA 57.241 40.909 0.00 0.00 0.00 2.59
2338 6273 3.639672 TGAGATGAACATGCTGTGGAT 57.360 42.857 0.00 0.00 0.00 3.41
2339 6274 3.275999 CATGAGATGAACATGCTGTGGA 58.724 45.455 0.00 0.00 38.58 4.02
2340 6275 3.692791 CATGAGATGAACATGCTGTGG 57.307 47.619 0.00 0.00 38.58 4.17
2346 6281 3.127376 TGTTTCCGCATGAGATGAACATG 59.873 43.478 0.00 0.00 45.19 3.21
2347 6282 3.346315 TGTTTCCGCATGAGATGAACAT 58.654 40.909 0.00 0.00 0.00 2.71
2348 6283 2.777094 TGTTTCCGCATGAGATGAACA 58.223 42.857 0.00 2.63 0.00 3.18
2349 6284 4.811024 TCTATGTTTCCGCATGAGATGAAC 59.189 41.667 0.00 0.00 0.00 3.18
2350 6285 5.022282 TCTATGTTTCCGCATGAGATGAA 57.978 39.130 0.00 0.00 0.00 2.57
2351 6286 4.670896 TCTATGTTTCCGCATGAGATGA 57.329 40.909 0.00 0.00 0.00 2.92
2352 6287 4.319333 GCTTCTATGTTTCCGCATGAGATG 60.319 45.833 0.00 0.00 0.00 2.90
2353 6288 3.812053 GCTTCTATGTTTCCGCATGAGAT 59.188 43.478 0.00 0.00 0.00 2.75
2354 6289 3.198068 GCTTCTATGTTTCCGCATGAGA 58.802 45.455 0.00 0.00 0.00 3.27
2355 6290 2.938451 TGCTTCTATGTTTCCGCATGAG 59.062 45.455 0.00 0.00 0.00 2.90
2356 6291 2.938451 CTGCTTCTATGTTTCCGCATGA 59.062 45.455 0.00 0.00 0.00 3.07
2357 6292 2.679837 ACTGCTTCTATGTTTCCGCATG 59.320 45.455 0.00 0.00 0.00 4.06
2358 6293 2.991250 ACTGCTTCTATGTTTCCGCAT 58.009 42.857 0.00 0.00 0.00 4.73
2359 6294 2.472695 ACTGCTTCTATGTTTCCGCA 57.527 45.000 0.00 0.00 0.00 5.69
2360 6295 5.926542 TGATATACTGCTTCTATGTTTCCGC 59.073 40.000 0.00 0.00 0.00 5.54
2361 6296 7.600375 ACATGATATACTGCTTCTATGTTTCCG 59.400 37.037 0.00 0.00 0.00 4.30
2362 6297 8.839310 ACATGATATACTGCTTCTATGTTTCC 57.161 34.615 0.00 0.00 0.00 3.13
2364 6299 9.935241 CCTACATGATATACTGCTTCTATGTTT 57.065 33.333 0.00 0.00 0.00 2.83
2365 6300 9.314133 TCCTACATGATATACTGCTTCTATGTT 57.686 33.333 0.00 0.00 0.00 2.71
2366 6301 8.885693 TCCTACATGATATACTGCTTCTATGT 57.114 34.615 0.00 0.00 0.00 2.29
2367 6302 8.965819 ACTCCTACATGATATACTGCTTCTATG 58.034 37.037 0.00 0.00 0.00 2.23
2369 6304 9.451002 GTACTCCTACATGATATACTGCTTCTA 57.549 37.037 0.00 0.00 0.00 2.10
2370 6305 8.167392 AGTACTCCTACATGATATACTGCTTCT 58.833 37.037 0.00 0.00 0.00 2.85
2371 6306 8.343168 AGTACTCCTACATGATATACTGCTTC 57.657 38.462 0.00 0.00 0.00 3.86
2372 6307 8.713708 AAGTACTCCTACATGATATACTGCTT 57.286 34.615 0.00 0.00 0.00 3.91
2373 6308 9.233649 GTAAGTACTCCTACATGATATACTGCT 57.766 37.037 0.00 0.00 0.00 4.24
2374 6309 8.460428 GGTAAGTACTCCTACATGATATACTGC 58.540 40.741 0.00 0.00 0.00 4.40
2375 6310 8.958506 GGGTAAGTACTCCTACATGATATACTG 58.041 40.741 0.00 0.00 0.00 2.74
2376 6311 8.114743 GGGGTAAGTACTCCTACATGATATACT 58.885 40.741 0.00 0.00 43.69 2.12
2377 6312 7.066766 CGGGGTAAGTACTCCTACATGATATAC 59.933 44.444 0.00 0.00 44.89 1.47
2378 6313 7.114754 CGGGGTAAGTACTCCTACATGATATA 58.885 42.308 0.00 0.00 44.89 0.86
2379 6314 5.950549 CGGGGTAAGTACTCCTACATGATAT 59.049 44.000 0.00 0.00 44.89 1.63
2380 6315 5.319453 CGGGGTAAGTACTCCTACATGATA 58.681 45.833 0.00 0.00 44.89 2.15
2381 6316 4.150359 CGGGGTAAGTACTCCTACATGAT 58.850 47.826 0.00 0.00 44.89 2.45
2382 6317 3.559069 CGGGGTAAGTACTCCTACATGA 58.441 50.000 0.00 0.00 44.89 3.07
2383 6318 2.626743 CCGGGGTAAGTACTCCTACATG 59.373 54.545 5.84 0.00 44.89 3.21
2384 6319 2.515429 TCCGGGGTAAGTACTCCTACAT 59.485 50.000 0.00 0.00 44.89 2.29
2385 6320 1.922447 TCCGGGGTAAGTACTCCTACA 59.078 52.381 0.00 0.00 44.89 2.74
2386 6321 2.736670 TCCGGGGTAAGTACTCCTAC 57.263 55.000 0.00 0.00 44.89 3.18
2387 6322 3.756082 TTTCCGGGGTAAGTACTCCTA 57.244 47.619 0.00 0.00 44.89 2.94
2388 6323 2.629017 TTTCCGGGGTAAGTACTCCT 57.371 50.000 0.00 0.00 44.89 3.69
2389 6324 3.701205 TTTTTCCGGGGTAAGTACTCC 57.299 47.619 0.00 0.00 43.60 3.85
2439 6374 9.496873 TCTGCTGCTTACAGTAAATAAAAGTAA 57.503 29.630 0.00 0.00 46.30 2.24
2440 6375 9.496873 TTCTGCTGCTTACAGTAAATAAAAGTA 57.503 29.630 0.00 0.00 46.30 2.24
2441 6376 7.979444 TCTGCTGCTTACAGTAAATAAAAGT 57.021 32.000 0.00 0.00 46.30 2.66
2442 6377 7.483059 GCTTCTGCTGCTTACAGTAAATAAAAG 59.517 37.037 0.00 0.00 46.30 2.27
2443 6378 7.305474 GCTTCTGCTGCTTACAGTAAATAAAA 58.695 34.615 0.00 0.00 46.30 1.52
2444 6379 6.842163 GCTTCTGCTGCTTACAGTAAATAAA 58.158 36.000 0.00 0.00 46.30 1.40
2445 6380 6.422776 GCTTCTGCTGCTTACAGTAAATAA 57.577 37.500 0.00 0.00 46.30 1.40
2447 6382 4.954092 GCTTCTGCTGCTTACAGTAAAT 57.046 40.909 0.00 0.00 46.30 1.40
2472 6407 5.183713 TGGTGCTTATCTATATTGCATTGGC 59.816 40.000 0.00 0.00 41.68 4.52
2473 6408 6.127814 CCTGGTGCTTATCTATATTGCATTGG 60.128 42.308 0.00 0.00 36.04 3.16
2474 6409 6.127814 CCCTGGTGCTTATCTATATTGCATTG 60.128 42.308 0.00 0.00 36.04 2.82
2475 6410 5.948162 CCCTGGTGCTTATCTATATTGCATT 59.052 40.000 0.00 0.00 36.04 3.56
2476 6411 5.251468 TCCCTGGTGCTTATCTATATTGCAT 59.749 40.000 0.00 0.00 36.04 3.96
2477 6412 4.597075 TCCCTGGTGCTTATCTATATTGCA 59.403 41.667 0.00 0.00 0.00 4.08
2478 6413 5.165961 TCCCTGGTGCTTATCTATATTGC 57.834 43.478 0.00 0.00 0.00 3.56
2479 6414 6.533730 TGTTCCCTGGTGCTTATCTATATTG 58.466 40.000 0.00 0.00 0.00 1.90
2480 6415 6.763715 TGTTCCCTGGTGCTTATCTATATT 57.236 37.500 0.00 0.00 0.00 1.28
2481 6416 6.240002 CCTTGTTCCCTGGTGCTTATCTATAT 60.240 42.308 0.00 0.00 0.00 0.86
2482 6417 5.071788 CCTTGTTCCCTGGTGCTTATCTATA 59.928 44.000 0.00 0.00 0.00 1.31
2483 6418 4.141390 CCTTGTTCCCTGGTGCTTATCTAT 60.141 45.833 0.00 0.00 0.00 1.98
2484 6419 3.199946 CCTTGTTCCCTGGTGCTTATCTA 59.800 47.826 0.00 0.00 0.00 1.98
2485 6420 2.025887 CCTTGTTCCCTGGTGCTTATCT 60.026 50.000 0.00 0.00 0.00 1.98
2486 6421 2.026262 TCCTTGTTCCCTGGTGCTTATC 60.026 50.000 0.00 0.00 0.00 1.75
2487 6422 1.992557 TCCTTGTTCCCTGGTGCTTAT 59.007 47.619 0.00 0.00 0.00 1.73
2488 6423 1.440618 TCCTTGTTCCCTGGTGCTTA 58.559 50.000 0.00 0.00 0.00 3.09
2489 6424 0.555769 TTCCTTGTTCCCTGGTGCTT 59.444 50.000 0.00 0.00 0.00 3.91
2490 6425 0.555769 TTTCCTTGTTCCCTGGTGCT 59.444 50.000 0.00 0.00 0.00 4.40
2491 6426 1.546029 GATTTCCTTGTTCCCTGGTGC 59.454 52.381 0.00 0.00 0.00 5.01
2492 6427 3.084786 GAGATTTCCTTGTTCCCTGGTG 58.915 50.000 0.00 0.00 0.00 4.17
2493 6428 2.989571 AGAGATTTCCTTGTTCCCTGGT 59.010 45.455 0.00 0.00 0.00 4.00
2494 6429 3.009473 TGAGAGATTTCCTTGTTCCCTGG 59.991 47.826 0.00 0.00 0.00 4.45
2495 6430 4.292186 TGAGAGATTTCCTTGTTCCCTG 57.708 45.455 0.00 0.00 0.00 4.45
2496 6431 6.418946 GTTATGAGAGATTTCCTTGTTCCCT 58.581 40.000 0.00 0.00 0.00 4.20
2497 6432 5.590663 GGTTATGAGAGATTTCCTTGTTCCC 59.409 44.000 0.00 0.00 0.00 3.97
2498 6433 6.418946 AGGTTATGAGAGATTTCCTTGTTCC 58.581 40.000 0.00 0.00 0.00 3.62
2499 6434 7.929941 AAGGTTATGAGAGATTTCCTTGTTC 57.070 36.000 0.00 0.00 33.39 3.18
2500 6435 7.177392 CCAAAGGTTATGAGAGATTTCCTTGTT 59.823 37.037 0.00 0.00 34.63 2.83
2501 6436 6.660949 CCAAAGGTTATGAGAGATTTCCTTGT 59.339 38.462 0.00 0.00 34.63 3.16
2502 6437 6.405176 GCCAAAGGTTATGAGAGATTTCCTTG 60.405 42.308 0.00 0.00 34.63 3.61
2503 6438 5.654209 GCCAAAGGTTATGAGAGATTTCCTT 59.346 40.000 0.00 0.00 35.68 3.36
2504 6439 5.196695 GCCAAAGGTTATGAGAGATTTCCT 58.803 41.667 0.00 0.00 0.00 3.36
2505 6440 4.339530 GGCCAAAGGTTATGAGAGATTTCC 59.660 45.833 0.00 0.00 0.00 3.13
2506 6441 5.196695 AGGCCAAAGGTTATGAGAGATTTC 58.803 41.667 5.01 0.00 0.00 2.17
2507 6442 5.196695 GAGGCCAAAGGTTATGAGAGATTT 58.803 41.667 5.01 0.00 0.00 2.17
2508 6443 4.385754 GGAGGCCAAAGGTTATGAGAGATT 60.386 45.833 5.01 0.00 0.00 2.40
2509 6444 3.137360 GGAGGCCAAAGGTTATGAGAGAT 59.863 47.826 5.01 0.00 0.00 2.75
2510 6445 2.505819 GGAGGCCAAAGGTTATGAGAGA 59.494 50.000 5.01 0.00 0.00 3.10
2511 6446 2.507471 AGGAGGCCAAAGGTTATGAGAG 59.493 50.000 5.01 0.00 0.00 3.20
2512 6447 2.505819 GAGGAGGCCAAAGGTTATGAGA 59.494 50.000 5.01 0.00 0.00 3.27
2513 6448 2.239654 TGAGGAGGCCAAAGGTTATGAG 59.760 50.000 5.01 0.00 0.00 2.90
2514 6449 2.274542 TGAGGAGGCCAAAGGTTATGA 58.725 47.619 5.01 0.00 0.00 2.15
2515 6450 2.806945 TGAGGAGGCCAAAGGTTATG 57.193 50.000 5.01 0.00 0.00 1.90
2516 6451 3.126453 AGATGAGGAGGCCAAAGGTTAT 58.874 45.455 5.01 0.00 0.00 1.89
2517 6452 2.505819 GAGATGAGGAGGCCAAAGGTTA 59.494 50.000 5.01 0.00 0.00 2.85
2518 6453 1.283321 GAGATGAGGAGGCCAAAGGTT 59.717 52.381 5.01 0.00 0.00 3.50
2519 6454 0.915364 GAGATGAGGAGGCCAAAGGT 59.085 55.000 5.01 0.00 0.00 3.50
2520 6455 0.914644 TGAGATGAGGAGGCCAAAGG 59.085 55.000 5.01 0.00 0.00 3.11
2521 6456 1.134159 CCTGAGATGAGGAGGCCAAAG 60.134 57.143 5.01 0.00 34.69 2.77
2522 6457 0.914644 CCTGAGATGAGGAGGCCAAA 59.085 55.000 5.01 0.00 34.69 3.28
2523 6458 0.984961 CCCTGAGATGAGGAGGCCAA 60.985 60.000 5.01 0.00 34.69 4.52
2524 6459 1.383664 CCCTGAGATGAGGAGGCCA 60.384 63.158 5.01 0.00 34.69 5.36
2525 6460 0.985490 AACCCTGAGATGAGGAGGCC 60.985 60.000 0.00 0.00 34.69 5.19
2526 6461 0.915364 AAACCCTGAGATGAGGAGGC 59.085 55.000 0.00 0.00 34.69 4.70
2527 6462 2.433970 GAGAAACCCTGAGATGAGGAGG 59.566 54.545 0.00 0.00 34.69 4.30
2528 6463 3.132646 CAGAGAAACCCTGAGATGAGGAG 59.867 52.174 0.00 0.00 34.69 3.69
2529 6464 3.102972 CAGAGAAACCCTGAGATGAGGA 58.897 50.000 0.00 0.00 34.69 3.71
2530 6465 2.170187 CCAGAGAAACCCTGAGATGAGG 59.830 54.545 0.00 0.00 33.65 3.86
2531 6466 3.102972 TCCAGAGAAACCCTGAGATGAG 58.897 50.000 0.00 0.00 33.65 2.90
2532 6467 3.190383 TCCAGAGAAACCCTGAGATGA 57.810 47.619 0.00 0.00 33.65 2.92
2533 6468 3.517100 TCTTCCAGAGAAACCCTGAGATG 59.483 47.826 0.00 0.00 33.65 2.90
2534 6469 3.796111 TCTTCCAGAGAAACCCTGAGAT 58.204 45.455 0.00 0.00 33.65 2.75
2535 6470 3.260269 TCTTCCAGAGAAACCCTGAGA 57.740 47.619 0.00 0.00 33.65 3.27
2536 6471 4.357918 TTTCTTCCAGAGAAACCCTGAG 57.642 45.455 0.00 0.00 46.69 3.35
2544 6479 3.117888 AGGCAGTGTTTTCTTCCAGAGAA 60.118 43.478 0.00 0.00 42.56 2.87
2545 6480 2.439507 AGGCAGTGTTTTCTTCCAGAGA 59.560 45.455 0.00 0.00 0.00 3.10
2546 6481 2.856222 AGGCAGTGTTTTCTTCCAGAG 58.144 47.619 0.00 0.00 0.00 3.35
2547 6482 3.297134 AAGGCAGTGTTTTCTTCCAGA 57.703 42.857 0.00 0.00 0.00 3.86
2548 6483 3.503748 CCTAAGGCAGTGTTTTCTTCCAG 59.496 47.826 0.00 0.00 0.00 3.86
2549 6484 3.486383 CCTAAGGCAGTGTTTTCTTCCA 58.514 45.455 0.00 0.00 0.00 3.53
2550 6485 2.820197 CCCTAAGGCAGTGTTTTCTTCC 59.180 50.000 0.00 0.00 0.00 3.46
2564 6499 1.453669 GGCTGGAGATGCCCTAAGG 59.546 63.158 0.00 0.00 44.32 2.69
2698 6635 8.604640 TTATTCATCAAAATTGAGCTGCAAAA 57.395 26.923 1.02 0.00 41.08 2.44
2773 6710 4.034048 GTGTTGATAATTGAACGCCGAGAT 59.966 41.667 0.00 0.00 0.00 2.75
2935 6872 3.827008 TCTGATTGAGCACCTATGGAC 57.173 47.619 0.00 0.00 0.00 4.02
2985 6922 0.466372 TGCGTCAGGAGATCCGAGAT 60.466 55.000 0.00 0.00 42.08 2.75
3043 6980 0.460459 GGTCCTCTAGCCGAAGTTGC 60.460 60.000 0.00 0.00 0.00 4.17
3095 7032 0.170116 CGAGAGCGAGCAAGAAGACT 59.830 55.000 0.00 0.00 40.82 3.24
3335 7272 9.240303 GGTACTACCTAGCAGATGGCATCTATG 62.240 48.148 28.39 19.21 39.34 2.23


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.