Multiple sequence alignment - TraesCS4A01G224200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G224200 chr4A 100.000 4535 0 0 1 4535 531951996 531956530 0.000000e+00 8375
1 TraesCS4A01G224200 chr4A 76.837 803 131 37 3308 4089 694202085 694201317 7.070000e-108 401
2 TraesCS4A01G224200 chr3A 98.324 4416 59 8 1 4408 91837855 91842263 0.000000e+00 7731
3 TraesCS4A01G224200 chr3A 90.121 1822 138 19 2599 4408 198183330 198185121 0.000000e+00 2329
4 TraesCS4A01G224200 chr3A 83.660 306 42 7 4106 4408 741904821 741905121 9.610000e-72 281
5 TraesCS4A01G224200 chr6B 97.737 4419 85 8 1 4408 706417149 706412735 0.000000e+00 7592
6 TraesCS4A01G224200 chr4B 97.014 4420 114 10 1 4408 120263098 120258685 0.000000e+00 7415
7 TraesCS4A01G224200 chr4B 96.855 4420 123 8 1 4408 222594508 222598923 0.000000e+00 7378
8 TraesCS4A01G224200 chr4B 92.886 4442 263 27 1 4408 268425229 268429651 0.000000e+00 6403
9 TraesCS4A01G224200 chr4B 96.508 3551 107 6 867 4408 40493152 40496694 0.000000e+00 5854
10 TraesCS4A01G224200 chr2D 95.186 4425 187 14 1 4408 340332411 340327996 0.000000e+00 6968
11 TraesCS4A01G224200 chr7A 96.989 3786 102 6 1 3775 492427906 492424122 0.000000e+00 6349
12 TraesCS4A01G224200 chr5B 98.253 3377 50 5 1041 4408 10418338 10414962 0.000000e+00 5901
13 TraesCS4A01G224200 chr2B 97.073 1503 38 4 1 1498 758244421 758242920 0.000000e+00 2527
14 TraesCS4A01G224200 chr7D 88.338 343 34 4 1 340 26330373 26330712 1.520000e-109 407
15 TraesCS4A01G224200 chr5D 100.000 130 0 0 4406 4535 116074978 116074849 1.630000e-59 241
16 TraesCS4A01G224200 chr5D 100.000 128 0 0 4406 4533 394323596 394323723 2.110000e-58 237
17 TraesCS4A01G224200 chr5D 99.231 130 1 0 4406 4535 260618711 260618582 7.580000e-58 235
18 TraesCS4A01G224200 chr5D 99.231 130 1 0 4406 4535 385842362 385842233 7.580000e-58 235
19 TraesCS4A01G224200 chr5D 99.231 130 1 0 4406 4535 487638942 487638813 7.580000e-58 235
20 TraesCS4A01G224200 chr3B 100.000 130 0 0 4406 4535 512462466 512462595 1.630000e-59 241
21 TraesCS4A01G224200 chr4D 99.231 130 1 0 4406 4535 23454339 23454468 7.580000e-58 235
22 TraesCS4A01G224200 chr4D 99.231 130 1 0 4406 4535 125194216 125194345 7.580000e-58 235
23 TraesCS4A01G224200 chr4D 99.231 130 1 0 4406 4535 305539178 305539049 7.580000e-58 235


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G224200 chr4A 531951996 531956530 4534 False 8375 8375 100.000 1 4535 1 chr4A.!!$F1 4534
1 TraesCS4A01G224200 chr4A 694201317 694202085 768 True 401 401 76.837 3308 4089 1 chr4A.!!$R1 781
2 TraesCS4A01G224200 chr3A 91837855 91842263 4408 False 7731 7731 98.324 1 4408 1 chr3A.!!$F1 4407
3 TraesCS4A01G224200 chr3A 198183330 198185121 1791 False 2329 2329 90.121 2599 4408 1 chr3A.!!$F2 1809
4 TraesCS4A01G224200 chr6B 706412735 706417149 4414 True 7592 7592 97.737 1 4408 1 chr6B.!!$R1 4407
5 TraesCS4A01G224200 chr4B 120258685 120263098 4413 True 7415 7415 97.014 1 4408 1 chr4B.!!$R1 4407
6 TraesCS4A01G224200 chr4B 222594508 222598923 4415 False 7378 7378 96.855 1 4408 1 chr4B.!!$F2 4407
7 TraesCS4A01G224200 chr4B 268425229 268429651 4422 False 6403 6403 92.886 1 4408 1 chr4B.!!$F3 4407
8 TraesCS4A01G224200 chr4B 40493152 40496694 3542 False 5854 5854 96.508 867 4408 1 chr4B.!!$F1 3541
9 TraesCS4A01G224200 chr2D 340327996 340332411 4415 True 6968 6968 95.186 1 4408 1 chr2D.!!$R1 4407
10 TraesCS4A01G224200 chr7A 492424122 492427906 3784 True 6349 6349 96.989 1 3775 1 chr7A.!!$R1 3774
11 TraesCS4A01G224200 chr5B 10414962 10418338 3376 True 5901 5901 98.253 1041 4408 1 chr5B.!!$R1 3367
12 TraesCS4A01G224200 chr2B 758242920 758244421 1501 True 2527 2527 97.073 1 1498 1 chr2B.!!$R1 1497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
344 350 1.205893 GTGTCGAAGGAGAAGGCTGAT 59.794 52.381 0.00 0.0 0.0 2.90 F
709 716 2.029918 GGGTCAAGTTCACAATCAAGGC 60.030 50.000 0.00 0.0 0.0 4.35 F
2251 2264 0.108041 CCCACCCTTTGCATGCATTC 60.108 55.000 23.37 0.0 0.0 2.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1821 1833 5.989477 AGATTGAACCATAACTTGATCCGA 58.011 37.500 0.0 0.0 0.00 4.55 R
2491 2504 1.263217 ACCTTTTCATGCGAACGTGAC 59.737 47.619 0.0 0.0 41.55 3.67 R
4110 4218 6.642683 ATGTAACTATCGTAACACAACTGC 57.357 37.500 0.0 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
172 175 7.191551 TGTCTCGTATTACGACTTAATCTTGG 58.808 38.462 14.63 2.22 46.73 3.61
173 176 6.142002 GTCTCGTATTACGACTTAATCTTGGC 59.858 42.308 14.63 0.57 46.73 4.52
174 177 6.039047 TCTCGTATTACGACTTAATCTTGGCT 59.961 38.462 14.63 0.00 46.73 4.75
175 178 6.567050 TCGTATTACGACTTAATCTTGGCTT 58.433 36.000 14.63 0.00 46.73 4.35
179 182 6.721571 TTACGACTTAATCTTGGCTTTCAG 57.278 37.500 0.00 0.00 0.00 3.02
180 183 4.003648 ACGACTTAATCTTGGCTTTCAGG 58.996 43.478 0.00 0.00 0.00 3.86
344 350 1.205893 GTGTCGAAGGAGAAGGCTGAT 59.794 52.381 0.00 0.00 0.00 2.90
709 716 2.029918 GGGTCAAGTTCACAATCAAGGC 60.030 50.000 0.00 0.00 0.00 4.35
865 876 4.144297 AGAACAAGCTTGCCAATTGTCTA 58.856 39.130 26.27 0.00 36.18 2.59
1052 1063 4.458989 GGTGAGGAAACAATATTGCAGTGA 59.541 41.667 15.48 0.00 0.00 3.41
1204 1215 5.175126 ACTTTCAGACAAAGTTCGTGTATCG 59.825 40.000 0.00 0.00 37.18 2.92
2123 2135 2.774687 ACATGACGTTTGGGAGGTAAC 58.225 47.619 0.00 0.00 0.00 2.50
2251 2264 0.108041 CCCACCCTTTGCATGCATTC 60.108 55.000 23.37 0.00 0.00 2.67
2430 2443 3.668447 TCAGTTTGCAGAGAATCCAGTC 58.332 45.455 0.00 0.00 33.66 3.51
2879 2910 2.427506 AGGCGTTCTTCTTCCATCAAC 58.572 47.619 0.00 0.00 0.00 3.18
2913 2944 3.696051 CCAAGTAGCATGGTTTACTGCAT 59.304 43.478 1.12 0.00 40.88 3.96
2960 2991 9.582431 CTCATTATCATGTCTGCTTGAAAAATT 57.418 29.630 0.00 0.00 33.40 1.82
3046 3078 2.111999 CTTGCGAGGTGACCTTGGGA 62.112 60.000 20.11 7.34 35.62 4.37
3109 3141 2.084546 GCACCTTAGTGGGTTGACATC 58.915 52.381 0.00 0.00 44.69 3.06
4411 4523 1.792006 CACAAGACGGTGTTACTCCC 58.208 55.000 0.00 0.00 34.09 4.30
4412 4524 1.069513 CACAAGACGGTGTTACTCCCA 59.930 52.381 0.00 0.00 34.09 4.37
4413 4525 1.069668 ACAAGACGGTGTTACTCCCAC 59.930 52.381 0.00 0.00 0.00 4.61
4417 4529 3.066198 GGTGTTACTCCCACCGCT 58.934 61.111 0.00 0.00 42.69 5.52
4418 4530 1.375523 GGTGTTACTCCCACCGCTG 60.376 63.158 0.00 0.00 42.69 5.18
4419 4531 1.375523 GTGTTACTCCCACCGCTGG 60.376 63.158 0.00 0.00 37.29 4.85
4420 4532 2.436115 GTTACTCCCACCGCTGGC 60.436 66.667 0.00 0.00 36.00 4.85
4421 4533 3.712907 TTACTCCCACCGCTGGCC 61.713 66.667 0.00 0.00 36.00 5.36
4436 4548 4.512914 GCCAGGCCATCCCTCCAC 62.513 72.222 5.01 0.00 44.09 4.02
4437 4549 2.693864 CCAGGCCATCCCTCCACT 60.694 66.667 5.01 0.00 44.09 4.00
4438 4550 2.750657 CCAGGCCATCCCTCCACTC 61.751 68.421 5.01 0.00 44.09 3.51
4439 4551 1.997311 CAGGCCATCCCTCCACTCA 60.997 63.158 5.01 0.00 44.09 3.41
4440 4552 1.997874 AGGCCATCCCTCCACTCAC 60.998 63.158 5.01 0.00 41.21 3.51
4441 4553 2.592308 GCCATCCCTCCACTCACC 59.408 66.667 0.00 0.00 0.00 4.02
4442 4554 3.049080 GCCATCCCTCCACTCACCC 62.049 68.421 0.00 0.00 0.00 4.61
4443 4555 1.616327 CCATCCCTCCACTCACCCA 60.616 63.158 0.00 0.00 0.00 4.51
4444 4556 1.604378 CATCCCTCCACTCACCCAC 59.396 63.158 0.00 0.00 0.00 4.61
4445 4557 1.160870 ATCCCTCCACTCACCCACA 59.839 57.895 0.00 0.00 0.00 4.17
4446 4558 1.201429 ATCCCTCCACTCACCCACAC 61.201 60.000 0.00 0.00 0.00 3.82
4447 4559 2.750350 CCTCCACTCACCCACACC 59.250 66.667 0.00 0.00 0.00 4.16
4448 4560 2.750350 CTCCACTCACCCACACCC 59.250 66.667 0.00 0.00 0.00 4.61
4449 4561 2.852075 TCCACTCACCCACACCCC 60.852 66.667 0.00 0.00 0.00 4.95
4450 4562 3.966543 CCACTCACCCACACCCCC 61.967 72.222 0.00 0.00 0.00 5.40
4451 4563 2.854032 CACTCACCCACACCCCCT 60.854 66.667 0.00 0.00 0.00 4.79
4452 4564 2.854032 ACTCACCCACACCCCCTG 60.854 66.667 0.00 0.00 0.00 4.45
4453 4565 2.854032 CTCACCCACACCCCCTGT 60.854 66.667 0.00 0.00 0.00 4.00
4454 4566 2.369015 TCACCCACACCCCCTGTT 60.369 61.111 0.00 0.00 0.00 3.16
4455 4567 1.073629 TCACCCACACCCCCTGTTA 60.074 57.895 0.00 0.00 0.00 2.41
4456 4568 0.476808 TCACCCACACCCCCTGTTAT 60.477 55.000 0.00 0.00 0.00 1.89
4457 4569 0.407918 CACCCACACCCCCTGTTATT 59.592 55.000 0.00 0.00 0.00 1.40
4458 4570 0.702316 ACCCACACCCCCTGTTATTC 59.298 55.000 0.00 0.00 0.00 1.75
4459 4571 0.999712 CCCACACCCCCTGTTATTCT 59.000 55.000 0.00 0.00 0.00 2.40
4460 4572 1.340991 CCCACACCCCCTGTTATTCTG 60.341 57.143 0.00 0.00 0.00 3.02
4461 4573 1.463674 CACACCCCCTGTTATTCTGC 58.536 55.000 0.00 0.00 0.00 4.26
4462 4574 0.035439 ACACCCCCTGTTATTCTGCG 60.035 55.000 0.00 0.00 0.00 5.18
4463 4575 0.748005 CACCCCCTGTTATTCTGCGG 60.748 60.000 0.00 0.00 0.00 5.69
4464 4576 1.823899 CCCCCTGTTATTCTGCGGC 60.824 63.158 0.00 0.00 0.00 6.53
4465 4577 2.180204 CCCCTGTTATTCTGCGGCG 61.180 63.158 0.51 0.51 0.00 6.46
4466 4578 1.153449 CCCTGTTATTCTGCGGCGA 60.153 57.895 12.98 0.00 0.00 5.54
4467 4579 1.429148 CCCTGTTATTCTGCGGCGAC 61.429 60.000 12.98 2.02 0.00 5.19
4490 4602 4.680237 CCTCACACCGCAGCCGAA 62.680 66.667 0.00 0.00 36.29 4.30
4491 4603 3.414700 CTCACACCGCAGCCGAAC 61.415 66.667 0.00 0.00 36.29 3.95
4492 4604 4.980805 TCACACCGCAGCCGAACC 62.981 66.667 0.00 0.00 36.29 3.62
4494 4606 4.988598 ACACCGCAGCCGAACCAG 62.989 66.667 0.00 0.00 36.29 4.00
4495 4607 4.988598 CACCGCAGCCGAACCAGT 62.989 66.667 0.00 0.00 36.29 4.00
4496 4608 4.988598 ACCGCAGCCGAACCAGTG 62.989 66.667 0.00 0.00 36.29 3.66
4497 4609 4.680237 CCGCAGCCGAACCAGTGA 62.680 66.667 0.00 0.00 36.29 3.41
4498 4610 2.664851 CGCAGCCGAACCAGTGAA 60.665 61.111 0.00 0.00 36.29 3.18
4499 4611 2.946762 GCAGCCGAACCAGTGAAC 59.053 61.111 0.00 0.00 0.00 3.18
4500 4612 2.617274 GCAGCCGAACCAGTGAACC 61.617 63.158 0.00 0.00 0.00 3.62
4501 4613 1.966451 CAGCCGAACCAGTGAACCC 60.966 63.158 0.00 0.00 0.00 4.11
4502 4614 2.147387 AGCCGAACCAGTGAACCCT 61.147 57.895 0.00 0.00 0.00 4.34
4503 4615 1.671379 GCCGAACCAGTGAACCCTC 60.671 63.158 0.00 0.00 0.00 4.30
4504 4616 1.374252 CCGAACCAGTGAACCCTCG 60.374 63.158 0.00 0.00 0.00 4.63
4505 4617 1.366366 CGAACCAGTGAACCCTCGT 59.634 57.895 0.00 0.00 0.00 4.18
4506 4618 0.599558 CGAACCAGTGAACCCTCGTA 59.400 55.000 0.00 0.00 0.00 3.43
4507 4619 1.668047 CGAACCAGTGAACCCTCGTAC 60.668 57.143 0.00 0.00 0.00 3.67
4508 4620 1.617357 GAACCAGTGAACCCTCGTACT 59.383 52.381 0.00 0.00 0.00 2.73
4509 4621 1.254954 ACCAGTGAACCCTCGTACTC 58.745 55.000 0.00 0.00 0.00 2.59
4510 4622 0.531200 CCAGTGAACCCTCGTACTCC 59.469 60.000 0.00 0.00 0.00 3.85
4511 4623 1.546961 CAGTGAACCCTCGTACTCCT 58.453 55.000 0.00 0.00 0.00 3.69
4512 4624 1.473278 CAGTGAACCCTCGTACTCCTC 59.527 57.143 0.00 0.00 0.00 3.71
4513 4625 1.355043 AGTGAACCCTCGTACTCCTCT 59.645 52.381 0.00 0.00 0.00 3.69
4514 4626 1.744522 GTGAACCCTCGTACTCCTCTC 59.255 57.143 0.00 0.00 0.00 3.20
4515 4627 1.340795 TGAACCCTCGTACTCCTCTCC 60.341 57.143 0.00 0.00 0.00 3.71
4516 4628 0.394080 AACCCTCGTACTCCTCTCCG 60.394 60.000 0.00 0.00 0.00 4.63
4517 4629 2.188161 CCCTCGTACTCCTCTCCGC 61.188 68.421 0.00 0.00 0.00 5.54
4518 4630 1.451567 CCTCGTACTCCTCTCCGCA 60.452 63.158 0.00 0.00 0.00 5.69
4519 4631 1.716826 CCTCGTACTCCTCTCCGCAC 61.717 65.000 0.00 0.00 0.00 5.34
4520 4632 2.037913 CTCGTACTCCTCTCCGCACG 62.038 65.000 0.00 0.00 0.00 5.34
4521 4633 2.799371 GTACTCCTCTCCGCACGG 59.201 66.667 1.73 1.73 0.00 4.94
4522 4634 2.439701 TACTCCTCTCCGCACGGG 60.440 66.667 9.58 0.11 35.59 5.28
4526 4638 4.821589 CCTCTCCGCACGGGCTTC 62.822 72.222 8.62 0.00 38.10 3.86
4527 4639 4.821589 CTCTCCGCACGGGCTTCC 62.822 72.222 8.62 0.00 38.10 3.46
4534 4646 3.052082 CACGGGCTTCCACTGCTG 61.052 66.667 0.00 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
172 175 3.981211 TGAAAGTCAATTGCCTGAAAGC 58.019 40.909 0.00 0.00 0.00 3.51
173 176 4.553323 CCTGAAAGTCAATTGCCTGAAAG 58.447 43.478 0.00 0.00 0.00 2.62
174 177 3.243839 GCCTGAAAGTCAATTGCCTGAAA 60.244 43.478 0.00 0.00 0.00 2.69
175 178 2.297033 GCCTGAAAGTCAATTGCCTGAA 59.703 45.455 0.00 0.00 0.00 3.02
179 182 2.818130 TTGCCTGAAAGTCAATTGCC 57.182 45.000 0.00 0.00 0.00 4.52
180 183 4.657075 CAATTGCCTGAAAGTCAATTGC 57.343 40.909 9.89 0.00 45.29 3.56
187 191 4.646492 ACAGAAAGTCAATTGCCTGAAAGT 59.354 37.500 0.00 0.00 0.00 2.66
709 716 7.867403 AGAAGCACAAAATGTAATAGGTTGTTG 59.133 33.333 0.00 0.00 30.20 3.33
1204 1215 7.011389 TGAGTATCCATTTTTCACATGATCGAC 59.989 37.037 0.00 0.00 0.00 4.20
1821 1833 5.989477 AGATTGAACCATAACTTGATCCGA 58.011 37.500 0.00 0.00 0.00 4.55
2123 2135 6.872628 TTATATGCTCCTTCATCTTTGCTG 57.127 37.500 0.00 0.00 0.00 4.41
2430 2443 2.046285 GCCTCAACGGGTCCATTGG 61.046 63.158 0.00 0.00 0.00 3.16
2491 2504 1.263217 ACCTTTTCATGCGAACGTGAC 59.737 47.619 0.00 0.00 41.55 3.67
2879 2910 5.220662 CCATGCTACTTGGTGAATCTTTACG 60.221 44.000 0.00 0.00 0.00 3.18
2913 2944 2.973406 GGGTTTGGGTTGGTAATTTGGA 59.027 45.455 0.00 0.00 0.00 3.53
4110 4218 6.642683 ATGTAACTATCGTAACACAACTGC 57.357 37.500 0.00 0.00 0.00 4.40
4299 4410 5.353938 GTGTTACTAAGTGGTGTCAACTGA 58.646 41.667 0.00 0.00 0.00 3.41
4419 4531 4.512914 GTGGAGGGATGGCCTGGC 62.513 72.222 11.05 11.05 0.00 4.85
4420 4532 2.693864 AGTGGAGGGATGGCCTGG 60.694 66.667 3.32 0.00 0.00 4.45
4421 4533 1.997311 TGAGTGGAGGGATGGCCTG 60.997 63.158 3.32 0.00 0.00 4.85
4422 4534 1.997874 GTGAGTGGAGGGATGGCCT 60.998 63.158 3.32 0.00 0.00 5.19
4423 4535 2.592308 GTGAGTGGAGGGATGGCC 59.408 66.667 0.00 0.00 0.00 5.36
4424 4536 2.592308 GGTGAGTGGAGGGATGGC 59.408 66.667 0.00 0.00 0.00 4.40
4425 4537 1.616327 TGGGTGAGTGGAGGGATGG 60.616 63.158 0.00 0.00 0.00 3.51
4426 4538 1.200760 TGTGGGTGAGTGGAGGGATG 61.201 60.000 0.00 0.00 0.00 3.51
4427 4539 1.160870 TGTGGGTGAGTGGAGGGAT 59.839 57.895 0.00 0.00 0.00 3.85
4428 4540 1.841556 GTGTGGGTGAGTGGAGGGA 60.842 63.158 0.00 0.00 0.00 4.20
4429 4541 2.750350 GTGTGGGTGAGTGGAGGG 59.250 66.667 0.00 0.00 0.00 4.30
4430 4542 2.750350 GGTGTGGGTGAGTGGAGG 59.250 66.667 0.00 0.00 0.00 4.30
4431 4543 2.750350 GGGTGTGGGTGAGTGGAG 59.250 66.667 0.00 0.00 0.00 3.86
4432 4544 2.852075 GGGGTGTGGGTGAGTGGA 60.852 66.667 0.00 0.00 0.00 4.02
4433 4545 3.966543 GGGGGTGTGGGTGAGTGG 61.967 72.222 0.00 0.00 0.00 4.00
4434 4546 2.854032 AGGGGGTGTGGGTGAGTG 60.854 66.667 0.00 0.00 0.00 3.51
4435 4547 2.854032 CAGGGGGTGTGGGTGAGT 60.854 66.667 0.00 0.00 0.00 3.41
4436 4548 1.131303 TAACAGGGGGTGTGGGTGAG 61.131 60.000 0.00 0.00 40.26 3.51
4437 4549 0.476808 ATAACAGGGGGTGTGGGTGA 60.477 55.000 0.00 0.00 40.26 4.02
4438 4550 0.407918 AATAACAGGGGGTGTGGGTG 59.592 55.000 0.00 0.00 40.26 4.61
4439 4551 0.702316 GAATAACAGGGGGTGTGGGT 59.298 55.000 0.00 0.00 40.26 4.51
4440 4552 0.999712 AGAATAACAGGGGGTGTGGG 59.000 55.000 0.00 0.00 40.26 4.61
4441 4553 1.955208 GCAGAATAACAGGGGGTGTGG 60.955 57.143 0.00 0.00 40.26 4.17
4442 4554 1.463674 GCAGAATAACAGGGGGTGTG 58.536 55.000 0.00 0.00 40.26 3.82
4443 4555 0.035439 CGCAGAATAACAGGGGGTGT 60.035 55.000 0.00 0.00 43.24 4.16
4444 4556 0.748005 CCGCAGAATAACAGGGGGTG 60.748 60.000 0.00 0.00 35.16 4.61
4445 4557 1.607612 CCGCAGAATAACAGGGGGT 59.392 57.895 0.00 0.00 35.16 4.95
4446 4558 1.823899 GCCGCAGAATAACAGGGGG 60.824 63.158 0.00 0.00 38.26 5.40
4447 4559 2.180204 CGCCGCAGAATAACAGGGG 61.180 63.158 0.00 0.00 40.19 4.79
4448 4560 1.153449 TCGCCGCAGAATAACAGGG 60.153 57.895 0.00 0.00 0.00 4.45
4449 4561 1.752501 CGTCGCCGCAGAATAACAGG 61.753 60.000 0.00 0.00 0.00 4.00
4450 4562 1.631072 CGTCGCCGCAGAATAACAG 59.369 57.895 0.00 0.00 0.00 3.16
4451 4563 1.807981 CCGTCGCCGCAGAATAACA 60.808 57.895 0.00 0.00 0.00 2.41
4452 4564 3.003478 CCGTCGCCGCAGAATAAC 58.997 61.111 0.00 0.00 0.00 1.89
4453 4565 2.888534 GCCGTCGCCGCAGAATAA 60.889 61.111 0.00 0.00 0.00 1.40
4454 4566 4.136511 TGCCGTCGCCGCAGAATA 62.137 61.111 0.00 0.00 0.00 1.75
4473 4585 4.680237 TTCGGCTGCGGTGTGAGG 62.680 66.667 7.10 0.00 0.00 3.86
4474 4586 3.414700 GTTCGGCTGCGGTGTGAG 61.415 66.667 7.10 0.00 0.00 3.51
4475 4587 4.980805 GGTTCGGCTGCGGTGTGA 62.981 66.667 7.10 0.00 0.00 3.58
4477 4589 4.988598 CTGGTTCGGCTGCGGTGT 62.989 66.667 7.10 0.00 0.00 4.16
4478 4590 4.988598 ACTGGTTCGGCTGCGGTG 62.989 66.667 7.10 0.00 0.00 4.94
4479 4591 4.988598 CACTGGTTCGGCTGCGGT 62.989 66.667 7.10 0.00 0.00 5.68
4480 4592 4.680237 TCACTGGTTCGGCTGCGG 62.680 66.667 0.11 0.11 0.00 5.69
4481 4593 2.664851 TTCACTGGTTCGGCTGCG 60.665 61.111 0.00 0.00 0.00 5.18
4482 4594 2.617274 GGTTCACTGGTTCGGCTGC 61.617 63.158 0.00 0.00 0.00 5.25
4483 4595 1.966451 GGGTTCACTGGTTCGGCTG 60.966 63.158 0.00 0.00 0.00 4.85
4484 4596 2.113243 GAGGGTTCACTGGTTCGGCT 62.113 60.000 0.00 0.00 0.00 5.52
4485 4597 1.671379 GAGGGTTCACTGGTTCGGC 60.671 63.158 0.00 0.00 0.00 5.54
4486 4598 1.374252 CGAGGGTTCACTGGTTCGG 60.374 63.158 0.00 0.00 0.00 4.30
4487 4599 0.599558 TACGAGGGTTCACTGGTTCG 59.400 55.000 0.00 0.00 31.65 3.95
4488 4600 1.617357 AGTACGAGGGTTCACTGGTTC 59.383 52.381 0.00 0.00 31.65 3.62
4489 4601 1.617357 GAGTACGAGGGTTCACTGGTT 59.383 52.381 0.00 0.00 31.65 3.67
4490 4602 1.254954 GAGTACGAGGGTTCACTGGT 58.745 55.000 0.00 0.00 33.82 4.00
4491 4603 0.531200 GGAGTACGAGGGTTCACTGG 59.469 60.000 0.00 0.00 0.00 4.00
4492 4604 1.473278 GAGGAGTACGAGGGTTCACTG 59.527 57.143 0.00 0.00 0.00 3.66
4493 4605 1.355043 AGAGGAGTACGAGGGTTCACT 59.645 52.381 0.00 0.00 0.00 3.41
4494 4606 1.744522 GAGAGGAGTACGAGGGTTCAC 59.255 57.143 0.00 0.00 0.00 3.18
4495 4607 1.340795 GGAGAGGAGTACGAGGGTTCA 60.341 57.143 0.00 0.00 0.00 3.18
4496 4608 1.391577 GGAGAGGAGTACGAGGGTTC 58.608 60.000 0.00 0.00 0.00 3.62
4497 4609 0.394080 CGGAGAGGAGTACGAGGGTT 60.394 60.000 0.00 0.00 0.00 4.11
4498 4610 1.224039 CGGAGAGGAGTACGAGGGT 59.776 63.158 0.00 0.00 0.00 4.34
4499 4611 2.188161 GCGGAGAGGAGTACGAGGG 61.188 68.421 0.00 0.00 0.00 4.30
4500 4612 1.451567 TGCGGAGAGGAGTACGAGG 60.452 63.158 0.00 0.00 0.00 4.63
4501 4613 1.722677 GTGCGGAGAGGAGTACGAG 59.277 63.158 0.00 0.00 0.00 4.18
4502 4614 2.104859 CGTGCGGAGAGGAGTACGA 61.105 63.158 0.08 0.00 46.50 3.43
4503 4615 2.403987 CGTGCGGAGAGGAGTACG 59.596 66.667 0.00 0.00 39.71 3.67
4504 4616 2.772691 CCCGTGCGGAGAGGAGTAC 61.773 68.421 12.71 0.00 37.50 2.73
4505 4617 2.439701 CCCGTGCGGAGAGGAGTA 60.440 66.667 12.71 0.00 37.50 2.59
4509 4621 4.821589 GAAGCCCGTGCGGAGAGG 62.822 72.222 12.71 0.00 44.33 3.69
4510 4622 4.821589 GGAAGCCCGTGCGGAGAG 62.822 72.222 12.71 0.00 44.33 3.20
4517 4629 3.052082 CAGCAGTGGAAGCCCGTG 61.052 66.667 0.00 0.00 34.29 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.