Multiple sequence alignment - TraesCS4A01G224100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4A01G224100 | chr4A | 100.000 | 4739 | 0 | 0 | 1 | 4739 | 531681552 | 531676814 | 0.000000e+00 | 8752 |
1 | TraesCS4A01G224100 | chr4A | 84.760 | 3189 | 426 | 36 | 954 | 4122 | 531386675 | 531383527 | 0.000000e+00 | 3142 |
2 | TraesCS4A01G224100 | chr4A | 85.308 | 2566 | 313 | 30 | 1482 | 4043 | 532215674 | 532218179 | 0.000000e+00 | 2591 |
3 | TraesCS4A01G224100 | chr4A | 80.020 | 996 | 138 | 30 | 958 | 1926 | 626302384 | 626301423 | 0.000000e+00 | 680 |
4 | TraesCS4A01G224100 | chr4A | 79.399 | 898 | 159 | 16 | 2058 | 2934 | 626299911 | 626299019 | 1.130000e-170 | 610 |
5 | TraesCS4A01G224100 | chr4A | 81.923 | 520 | 80 | 12 | 4198 | 4712 | 430874799 | 430874289 | 1.220000e-115 | 427 |
6 | TraesCS4A01G224100 | chr4B | 96.493 | 4135 | 117 | 12 | 1 | 4128 | 95068218 | 95072331 | 0.000000e+00 | 6807 |
7 | TraesCS4A01G224100 | chr4B | 91.130 | 2965 | 249 | 10 | 994 | 3956 | 94791602 | 94788650 | 0.000000e+00 | 4006 |
8 | TraesCS4A01G224100 | chr4D | 97.651 | 3405 | 78 | 1 | 725 | 4129 | 64537714 | 64541116 | 0.000000e+00 | 5843 |
9 | TraesCS4A01G224100 | chr4D | 89.175 | 1478 | 141 | 5 | 1012 | 2488 | 64356168 | 64354709 | 0.000000e+00 | 1825 |
10 | TraesCS4A01G224100 | chr4D | 85.576 | 1657 | 191 | 29 | 2484 | 4122 | 64349333 | 64347707 | 0.000000e+00 | 1692 |
11 | TraesCS4A01G224100 | chr4D | 93.605 | 735 | 33 | 6 | 1 | 726 | 64536945 | 64537674 | 0.000000e+00 | 1085 |
12 | TraesCS4A01G224100 | chr4D | 90.130 | 385 | 32 | 6 | 4357 | 4739 | 445477873 | 445477493 | 3.290000e-136 | 496 |
13 | TraesCS4A01G224100 | chr2D | 83.696 | 2938 | 436 | 21 | 954 | 3886 | 580192054 | 580194953 | 0.000000e+00 | 2732 |
14 | TraesCS4A01G224100 | chr2D | 90.206 | 388 | 31 | 7 | 4355 | 4738 | 553390943 | 553390559 | 2.550000e-137 | 499 |
15 | TraesCS4A01G224100 | chr2D | 75.744 | 437 | 76 | 17 | 288 | 706 | 580191431 | 580191855 | 4.840000e-45 | 193 |
16 | TraesCS4A01G224100 | chr2B | 83.356 | 2968 | 444 | 26 | 966 | 3927 | 699107712 | 699110635 | 0.000000e+00 | 2699 |
17 | TraesCS4A01G224100 | chr2A | 83.607 | 1763 | 250 | 19 | 2133 | 3886 | 718119194 | 718120926 | 0.000000e+00 | 1618 |
18 | TraesCS4A01G224100 | chr2A | 81.669 | 671 | 107 | 10 | 954 | 1620 | 718117765 | 718118423 | 1.160000e-150 | 544 |
19 | TraesCS4A01G224100 | chr3D | 90.956 | 387 | 31 | 4 | 4355 | 4739 | 594310100 | 594309716 | 7.030000e-143 | 518 |
20 | TraesCS4A01G224100 | chr3D | 90.979 | 388 | 28 | 6 | 4355 | 4739 | 273122275 | 273122658 | 2.530000e-142 | 516 |
21 | TraesCS4A01G224100 | chr3D | 90.000 | 390 | 33 | 6 | 4354 | 4739 | 247313426 | 247313813 | 2.550000e-137 | 499 |
22 | TraesCS4A01G224100 | chr3D | 90.155 | 386 | 32 | 6 | 4355 | 4738 | 341185466 | 341185085 | 9.160000e-137 | 497 |
23 | TraesCS4A01G224100 | chr3D | 89.717 | 389 | 36 | 4 | 4353 | 4739 | 290698147 | 290697761 | 1.180000e-135 | 494 |
24 | TraesCS4A01G224100 | chr3D | 79.866 | 447 | 80 | 7 | 954 | 1395 | 438451673 | 438452114 | 7.650000e-83 | 318 |
25 | TraesCS4A01G224100 | chr3B | 89.948 | 388 | 33 | 6 | 4355 | 4739 | 616314959 | 616314575 | 3.290000e-136 | 496 |
26 | TraesCS4A01G224100 | chrUn | 78.905 | 493 | 88 | 9 | 1763 | 2244 | 358384661 | 358385148 | 2.130000e-83 | 320 |
27 | TraesCS4A01G224100 | chrUn | 83.784 | 222 | 30 | 5 | 4126 | 4347 | 255520293 | 255520078 | 6.220000e-49 | 206 |
28 | TraesCS4A01G224100 | chr3A | 86.752 | 234 | 24 | 5 | 4126 | 4354 | 593223142 | 593222911 | 2.190000e-63 | 254 |
29 | TraesCS4A01G224100 | chr5B | 79.675 | 369 | 56 | 18 | 4190 | 4549 | 427327956 | 427327598 | 1.020000e-61 | 248 |
30 | TraesCS4A01G224100 | chr7D | 86.087 | 230 | 23 | 5 | 4126 | 4354 | 120510850 | 120511071 | 6.130000e-59 | 239 |
31 | TraesCS4A01G224100 | chr7D | 86.026 | 229 | 24 | 6 | 4131 | 4354 | 449530484 | 449530259 | 6.130000e-59 | 239 |
32 | TraesCS4A01G224100 | chr7D | 85.088 | 228 | 32 | 2 | 4212 | 4439 | 339190870 | 339191095 | 1.030000e-56 | 231 |
33 | TraesCS4A01G224100 | chr7D | 84.685 | 222 | 28 | 5 | 4127 | 4347 | 382503091 | 382502875 | 2.870000e-52 | 217 |
34 | TraesCS4A01G224100 | chr6D | 84.753 | 223 | 27 | 4 | 4126 | 4347 | 52549223 | 52549007 | 2.870000e-52 | 217 |
35 | TraesCS4A01G224100 | chr6B | 84.211 | 228 | 27 | 6 | 4126 | 4347 | 221381788 | 221381564 | 3.710000e-51 | 213 |
36 | TraesCS4A01G224100 | chr6B | 83.784 | 222 | 30 | 5 | 4126 | 4347 | 332365225 | 332365440 | 6.220000e-49 | 206 |
37 | TraesCS4A01G224100 | chr6B | 83.784 | 222 | 30 | 5 | 4126 | 4347 | 332372447 | 332372662 | 6.220000e-49 | 206 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4A01G224100 | chr4A | 531676814 | 531681552 | 4738 | True | 8752.0 | 8752 | 100.0000 | 1 | 4739 | 1 | chr4A.!!$R3 | 4738 |
1 | TraesCS4A01G224100 | chr4A | 531383527 | 531386675 | 3148 | True | 3142.0 | 3142 | 84.7600 | 954 | 4122 | 1 | chr4A.!!$R2 | 3168 |
2 | TraesCS4A01G224100 | chr4A | 532215674 | 532218179 | 2505 | False | 2591.0 | 2591 | 85.3080 | 1482 | 4043 | 1 | chr4A.!!$F1 | 2561 |
3 | TraesCS4A01G224100 | chr4A | 626299019 | 626302384 | 3365 | True | 645.0 | 680 | 79.7095 | 958 | 2934 | 2 | chr4A.!!$R4 | 1976 |
4 | TraesCS4A01G224100 | chr4A | 430874289 | 430874799 | 510 | True | 427.0 | 427 | 81.9230 | 4198 | 4712 | 1 | chr4A.!!$R1 | 514 |
5 | TraesCS4A01G224100 | chr4B | 95068218 | 95072331 | 4113 | False | 6807.0 | 6807 | 96.4930 | 1 | 4128 | 1 | chr4B.!!$F1 | 4127 |
6 | TraesCS4A01G224100 | chr4B | 94788650 | 94791602 | 2952 | True | 4006.0 | 4006 | 91.1300 | 994 | 3956 | 1 | chr4B.!!$R1 | 2962 |
7 | TraesCS4A01G224100 | chr4D | 64536945 | 64541116 | 4171 | False | 3464.0 | 5843 | 95.6280 | 1 | 4129 | 2 | chr4D.!!$F1 | 4128 |
8 | TraesCS4A01G224100 | chr4D | 64354709 | 64356168 | 1459 | True | 1825.0 | 1825 | 89.1750 | 1012 | 2488 | 1 | chr4D.!!$R2 | 1476 |
9 | TraesCS4A01G224100 | chr4D | 64347707 | 64349333 | 1626 | True | 1692.0 | 1692 | 85.5760 | 2484 | 4122 | 1 | chr4D.!!$R1 | 1638 |
10 | TraesCS4A01G224100 | chr2D | 580191431 | 580194953 | 3522 | False | 1462.5 | 2732 | 79.7200 | 288 | 3886 | 2 | chr2D.!!$F1 | 3598 |
11 | TraesCS4A01G224100 | chr2B | 699107712 | 699110635 | 2923 | False | 2699.0 | 2699 | 83.3560 | 966 | 3927 | 1 | chr2B.!!$F1 | 2961 |
12 | TraesCS4A01G224100 | chr2A | 718117765 | 718120926 | 3161 | False | 1081.0 | 1618 | 82.6380 | 954 | 3886 | 2 | chr2A.!!$F1 | 2932 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
52 | 53 | 0.042188 | CACTGGTCGTTTGTTCAGCG | 60.042 | 55.000 | 0.00 | 0.00 | 0.00 | 5.18 | F |
928 | 994 | 0.326264 | GTGTCCCTGACCTCTGCATT | 59.674 | 55.000 | 0.00 | 0.00 | 0.00 | 3.56 | F |
1160 | 1228 | 0.813184 | CAACTGACCATGATGGCCAC | 59.187 | 55.000 | 8.16 | 2.36 | 42.67 | 5.01 | F |
1479 | 1571 | 1.410882 | GAGATAGAAAGGCAGCGGTCT | 59.589 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 | F |
1916 | 2468 | 1.539165 | CTCTCCAGGATCTCCCGGA | 59.461 | 63.158 | 0.73 | 1.28 | 40.87 | 5.14 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1464 | 1556 | 0.321122 | CTTGAGACCGCTGCCTTTCT | 60.321 | 55.000 | 0.0 | 0.0 | 0.00 | 2.52 | R |
2244 | 4261 | 1.139853 | GGAAGGTCATGGTAGCTCAGG | 59.860 | 57.143 | 0.0 | 0.0 | 0.00 | 3.86 | R |
2958 | 5011 | 3.995705 | GCTTCTCATCAGCATATCTGTCC | 59.004 | 47.826 | 0.0 | 0.0 | 43.32 | 4.02 | R |
3669 | 5728 | 3.750130 | CAGTGTCCCATTGAGTTCTGAAG | 59.250 | 47.826 | 0.0 | 0.0 | 0.00 | 3.02 | R |
3959 | 6044 | 5.036117 | ACAACAGAAACAGTACAGTCCAT | 57.964 | 39.130 | 0.0 | 0.0 | 0.00 | 3.41 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
52 | 53 | 0.042188 | CACTGGTCGTTTGTTCAGCG | 60.042 | 55.000 | 0.00 | 0.00 | 0.00 | 5.18 |
88 | 89 | 3.577919 | CCACTCTATAGGCCACCTACTT | 58.422 | 50.000 | 5.01 | 0.00 | 39.10 | 2.24 |
112 | 113 | 6.122277 | TCAAGTCTTCAGAAGGTGAACATTT | 58.878 | 36.000 | 10.42 | 0.00 | 40.45 | 2.32 |
157 | 158 | 5.707242 | ATCATATGCTGCATTTTCAGAGG | 57.293 | 39.130 | 21.56 | 3.21 | 36.19 | 3.69 |
159 | 160 | 4.577693 | TCATATGCTGCATTTTCAGAGGAC | 59.422 | 41.667 | 21.56 | 0.00 | 36.19 | 3.85 |
230 | 232 | 1.609208 | ATCTTGTTCCAAACAGCGCT | 58.391 | 45.000 | 2.64 | 2.64 | 43.27 | 5.92 |
231 | 233 | 0.662619 | TCTTGTTCCAAACAGCGCTG | 59.337 | 50.000 | 34.89 | 34.89 | 43.27 | 5.18 |
409 | 413 | 6.833933 | TGCAGTTCTCTAGTCCAGATTACATA | 59.166 | 38.462 | 0.00 | 0.00 | 31.13 | 2.29 |
415 | 419 | 9.871238 | TTCTCTAGTCCAGATTACATACAAAAC | 57.129 | 33.333 | 0.00 | 0.00 | 31.13 | 2.43 |
434 | 438 | 1.829222 | ACGGGTGACAGTCGGATATTT | 59.171 | 47.619 | 0.00 | 0.00 | 31.00 | 1.40 |
607 | 627 | 4.689062 | TCTCTAGGATTGGGTCTCTGTTT | 58.311 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
627 | 647 | 6.303054 | TGTTTTGGGATATGAGTCAAAGTCA | 58.697 | 36.000 | 0.00 | 0.00 | 31.89 | 3.41 |
653 | 673 | 2.857483 | TGCTTTCCAAATTCGACTGGA | 58.143 | 42.857 | 6.07 | 6.07 | 40.03 | 3.86 |
855 | 921 | 4.291249 | AGGGGGAAAATGCTACTCTTTACA | 59.709 | 41.667 | 0.00 | 0.00 | 0.00 | 2.41 |
911 | 977 | 4.672899 | TCATTCTTTCCTTAAAGGGGGTG | 58.327 | 43.478 | 0.00 | 0.00 | 42.09 | 4.61 |
928 | 994 | 0.326264 | GTGTCCCTGACCTCTGCATT | 59.674 | 55.000 | 0.00 | 0.00 | 0.00 | 3.56 |
1157 | 1225 | 1.133790 | GAAGCAACTGACCATGATGGC | 59.866 | 52.381 | 12.25 | 5.15 | 42.67 | 4.40 |
1160 | 1228 | 0.813184 | CAACTGACCATGATGGCCAC | 59.187 | 55.000 | 8.16 | 2.36 | 42.67 | 5.01 |
1377 | 1463 | 8.258007 | AGTGAAATTACGGATGAGATAGTTGAA | 58.742 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
1443 | 1535 | 2.971598 | GCAGCCCTCCCAGCTTGTA | 61.972 | 63.158 | 0.00 | 0.00 | 38.95 | 2.41 |
1464 | 1556 | 6.429151 | TGTAGCTAACCCACTTACTGAGATA | 58.571 | 40.000 | 0.00 | 0.00 | 0.00 | 1.98 |
1479 | 1571 | 1.410882 | GAGATAGAAAGGCAGCGGTCT | 59.589 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
1878 | 2428 | 2.286872 | GATGTCTGGGAGCAAGATGTG | 58.713 | 52.381 | 0.00 | 0.00 | 0.00 | 3.21 |
1884 | 2436 | 3.327757 | TCTGGGAGCAAGATGTGTACTTT | 59.672 | 43.478 | 0.00 | 0.00 | 0.00 | 2.66 |
1916 | 2468 | 1.539165 | CTCTCCAGGATCTCCCGGA | 59.461 | 63.158 | 0.73 | 1.28 | 40.87 | 5.14 |
2064 | 4081 | 2.034066 | CGGAAGGGCCACATGTGT | 59.966 | 61.111 | 23.79 | 5.30 | 35.94 | 3.72 |
2244 | 4261 | 6.321717 | TGATCATGTCCGAGCAATTTTAAAC | 58.678 | 36.000 | 0.00 | 0.00 | 0.00 | 2.01 |
2451 | 4468 | 2.942376 | CCGCAATATGCTTGAGGTTGTA | 59.058 | 45.455 | 0.43 | 0.00 | 42.25 | 2.41 |
2517 | 4534 | 5.691754 | TGATATTGTGCGTGAACTAGCTATG | 59.308 | 40.000 | 0.00 | 0.00 | 0.00 | 2.23 |
2627 | 4679 | 4.273480 | GTCATTATGTGGATGGAAAGACGG | 59.727 | 45.833 | 0.00 | 0.00 | 0.00 | 4.79 |
3466 | 5525 | 3.188254 | GCACAGTGCAAAAACTTTGGTTT | 59.812 | 39.130 | 21.22 | 0.00 | 44.05 | 3.27 |
3497 | 5556 | 2.989571 | ACTCCTTTCCCAACCTGAAGAT | 59.010 | 45.455 | 0.00 | 0.00 | 0.00 | 2.40 |
3669 | 5728 | 1.168407 | TGCTGAGCTTGCACAAGGAC | 61.168 | 55.000 | 5.83 | 0.00 | 38.80 | 3.85 |
3970 | 6055 | 4.431416 | TTTGTTGACCATGGACTGTACT | 57.569 | 40.909 | 21.47 | 0.00 | 0.00 | 2.73 |
4104 | 6192 | 7.194607 | ACATTGGTATCTTTTGATCTATGCG | 57.805 | 36.000 | 0.00 | 0.00 | 40.19 | 4.73 |
4119 | 6207 | 0.183492 | ATGCGCTATGTCACCCCATT | 59.817 | 50.000 | 9.73 | 0.00 | 0.00 | 3.16 |
4122 | 6210 | 2.158682 | TGCGCTATGTCACCCCATTATT | 60.159 | 45.455 | 9.73 | 0.00 | 0.00 | 1.40 |
4129 | 6217 | 8.234546 | CGCTATGTCACCCCATTATTATTTTAC | 58.765 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
4130 | 6218 | 8.520351 | GCTATGTCACCCCATTATTATTTTACC | 58.480 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
4131 | 6219 | 9.581289 | CTATGTCACCCCATTATTATTTTACCA | 57.419 | 33.333 | 0.00 | 0.00 | 0.00 | 3.25 |
4133 | 6221 | 8.243961 | TGTCACCCCATTATTATTTTACCATG | 57.756 | 34.615 | 0.00 | 0.00 | 0.00 | 3.66 |
4134 | 6222 | 8.061920 | TGTCACCCCATTATTATTTTACCATGA | 58.938 | 33.333 | 0.00 | 0.00 | 0.00 | 3.07 |
4135 | 6223 | 8.919145 | GTCACCCCATTATTATTTTACCATGAA | 58.081 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
4136 | 6224 | 9.667607 | TCACCCCATTATTATTTTACCATGAAT | 57.332 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
4177 | 6265 | 7.793927 | ACAACTTTATTATTGCCTCTAGAGC | 57.206 | 36.000 | 14.73 | 10.34 | 0.00 | 4.09 |
4178 | 6266 | 7.338710 | ACAACTTTATTATTGCCTCTAGAGCA | 58.661 | 34.615 | 14.73 | 12.79 | 38.81 | 4.26 |
4179 | 6267 | 7.995488 | ACAACTTTATTATTGCCTCTAGAGCAT | 59.005 | 33.333 | 14.73 | 8.17 | 40.59 | 3.79 |
4180 | 6268 | 9.494271 | CAACTTTATTATTGCCTCTAGAGCATA | 57.506 | 33.333 | 14.73 | 7.24 | 40.59 | 3.14 |
4187 | 6275 | 9.804977 | ATTATTGCCTCTAGAGCATATTTTCTT | 57.195 | 29.630 | 14.73 | 0.00 | 40.59 | 2.52 |
4188 | 6276 | 7.742556 | ATTGCCTCTAGAGCATATTTTCTTC | 57.257 | 36.000 | 14.73 | 0.00 | 40.59 | 2.87 |
4189 | 6277 | 6.239217 | TGCCTCTAGAGCATATTTTCTTCA | 57.761 | 37.500 | 14.73 | 0.00 | 34.69 | 3.02 |
4190 | 6278 | 6.653020 | TGCCTCTAGAGCATATTTTCTTCAA | 58.347 | 36.000 | 14.73 | 0.00 | 34.69 | 2.69 |
4191 | 6279 | 7.285566 | TGCCTCTAGAGCATATTTTCTTCAAT | 58.714 | 34.615 | 14.73 | 0.00 | 34.69 | 2.57 |
4192 | 6280 | 8.432013 | TGCCTCTAGAGCATATTTTCTTCAATA | 58.568 | 33.333 | 14.73 | 0.00 | 34.69 | 1.90 |
4193 | 6281 | 8.716909 | GCCTCTAGAGCATATTTTCTTCAATAC | 58.283 | 37.037 | 14.73 | 0.00 | 0.00 | 1.89 |
4194 | 6282 | 9.995003 | CCTCTAGAGCATATTTTCTTCAATACT | 57.005 | 33.333 | 14.73 | 0.00 | 0.00 | 2.12 |
4229 | 6317 | 0.179092 | GTTAAGCGTGCGGACCCTAT | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
4231 | 6319 | 1.038681 | TAAGCGTGCGGACCCTATGA | 61.039 | 55.000 | 0.00 | 0.00 | 0.00 | 2.15 |
4241 | 6329 | 2.623889 | CGGACCCTATGAGTTCGAGAAT | 59.376 | 50.000 | 0.00 | 0.00 | 38.56 | 2.40 |
4242 | 6330 | 3.551046 | CGGACCCTATGAGTTCGAGAATG | 60.551 | 52.174 | 0.00 | 0.00 | 38.56 | 2.67 |
4255 | 6343 | 7.048629 | AGTTCGAGAATGATGTAGACATGAT | 57.951 | 36.000 | 0.00 | 0.00 | 36.57 | 2.45 |
4259 | 6347 | 6.017109 | TCGAGAATGATGTAGACATGATCGAA | 60.017 | 38.462 | 0.00 | 0.00 | 39.80 | 3.71 |
4261 | 6349 | 7.328005 | CGAGAATGATGTAGACATGATCGAAAT | 59.672 | 37.037 | 0.00 | 0.00 | 38.04 | 2.17 |
4262 | 6350 | 8.307921 | AGAATGATGTAGACATGATCGAAATG | 57.692 | 34.615 | 0.00 | 9.30 | 36.57 | 2.32 |
4264 | 6352 | 4.751600 | TGATGTAGACATGATCGAAATGCC | 59.248 | 41.667 | 0.00 | 1.34 | 36.57 | 4.40 |
4271 | 6359 | 0.104855 | TGATCGAAATGCCTCTCCGG | 59.895 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
4273 | 6361 | 0.541863 | ATCGAAATGCCTCTCCGGTT | 59.458 | 50.000 | 0.00 | 0.00 | 34.25 | 4.44 |
4279 | 6367 | 4.755123 | CGAAATGCCTCTCCGGTTAATAAT | 59.245 | 41.667 | 0.00 | 0.00 | 34.25 | 1.28 |
4289 | 6377 | 4.571919 | TCCGGTTAATAATCAATAGCGGG | 58.428 | 43.478 | 0.00 | 0.00 | 46.54 | 6.13 |
4295 | 6383 | 7.336396 | GGTTAATAATCAATAGCGGGACCTAT | 58.664 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
4300 | 6388 | 2.500098 | TCAATAGCGGGACCTATATGCC | 59.500 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
4342 | 6430 | 5.340010 | TCTACGAAGATCTTTATCGGTCG | 57.660 | 43.478 | 17.21 | 13.10 | 43.94 | 4.79 |
4345 | 6433 | 4.349501 | ACGAAGATCTTTATCGGTCGAAC | 58.650 | 43.478 | 17.21 | 0.00 | 42.42 | 3.95 |
4348 | 6436 | 5.340439 | AAGATCTTTATCGGTCGAACCTT | 57.660 | 39.130 | 0.88 | 0.00 | 35.66 | 3.50 |
4349 | 6437 | 5.340439 | AGATCTTTATCGGTCGAACCTTT | 57.660 | 39.130 | 0.00 | 0.00 | 35.66 | 3.11 |
4352 | 6440 | 6.924060 | AGATCTTTATCGGTCGAACCTTTATG | 59.076 | 38.462 | 0.00 | 0.00 | 35.66 | 1.90 |
4364 | 6452 | 6.696148 | GTCGAACCTTTATGATGATACGTCTT | 59.304 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
4483 | 6572 | 7.202158 | GGATTAACCTATTAACCTAGAGCCCAA | 60.202 | 40.741 | 0.00 | 0.00 | 33.09 | 4.12 |
4489 | 6578 | 0.257039 | AACCTAGAGCCCAATGCCAG | 59.743 | 55.000 | 0.00 | 0.00 | 42.71 | 4.85 |
4494 | 6583 | 1.260544 | AGAGCCCAATGCCAGTTTTC | 58.739 | 50.000 | 0.00 | 0.00 | 42.71 | 2.29 |
4495 | 6584 | 1.203100 | AGAGCCCAATGCCAGTTTTCT | 60.203 | 47.619 | 0.00 | 0.00 | 42.71 | 2.52 |
4496 | 6585 | 2.041620 | AGAGCCCAATGCCAGTTTTCTA | 59.958 | 45.455 | 0.00 | 0.00 | 42.71 | 2.10 |
4540 | 6629 | 9.893305 | AGTTTTACAGAAAAGGAATATCAAACG | 57.107 | 29.630 | 0.00 | 0.00 | 35.21 | 3.60 |
4546 | 6635 | 6.371548 | CAGAAAAGGAATATCAAACGGAGTCA | 59.628 | 38.462 | 0.00 | 0.00 | 45.00 | 3.41 |
4549 | 6638 | 6.496338 | AAGGAATATCAAACGGAGTCAAAC | 57.504 | 37.500 | 0.00 | 0.00 | 45.00 | 2.93 |
4550 | 6639 | 4.630069 | AGGAATATCAAACGGAGTCAAACG | 59.370 | 41.667 | 0.00 | 0.00 | 45.00 | 3.60 |
4551 | 6640 | 4.628333 | GGAATATCAAACGGAGTCAAACGA | 59.372 | 41.667 | 0.00 | 0.00 | 45.00 | 3.85 |
4552 | 6641 | 5.220416 | GGAATATCAAACGGAGTCAAACGAG | 60.220 | 44.000 | 0.00 | 0.00 | 45.00 | 4.18 |
4556 | 6646 | 0.600255 | AACGGAGTCAAACGAGCTGG | 60.600 | 55.000 | 0.00 | 0.00 | 45.00 | 4.85 |
4559 | 6649 | 1.872237 | CGGAGTCAAACGAGCTGGAAA | 60.872 | 52.381 | 1.44 | 0.00 | 0.00 | 3.13 |
4562 | 6652 | 3.253432 | GGAGTCAAACGAGCTGGAAATTT | 59.747 | 43.478 | 1.44 | 0.00 | 0.00 | 1.82 |
4564 | 6654 | 5.358298 | AGTCAAACGAGCTGGAAATTTAC | 57.642 | 39.130 | 1.44 | 0.00 | 0.00 | 2.01 |
4567 | 6657 | 2.467566 | ACGAGCTGGAAATTTACGGT | 57.532 | 45.000 | 10.97 | 4.10 | 0.00 | 4.83 |
4572 | 6662 | 4.142687 | CGAGCTGGAAATTTACGGTGATTT | 60.143 | 41.667 | 10.97 | 4.61 | 0.00 | 2.17 |
4594 | 6684 | 3.864789 | TTATGGATCAGAAGAAGCCCC | 57.135 | 47.619 | 0.00 | 0.00 | 0.00 | 5.80 |
4595 | 6685 | 1.904440 | ATGGATCAGAAGAAGCCCCT | 58.096 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4597 | 6687 | 1.207791 | GGATCAGAAGAAGCCCCTGA | 58.792 | 55.000 | 0.00 | 0.00 | 40.68 | 3.86 |
4600 | 6690 | 0.326264 | TCAGAAGAAGCCCCTGAAGC | 59.674 | 55.000 | 0.00 | 0.00 | 34.38 | 3.86 |
4602 | 6692 | 0.037447 | AGAAGAAGCCCCTGAAGCAC | 59.963 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
4603 | 6693 | 0.250901 | GAAGAAGCCCCTGAAGCACA | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 4.57 |
4604 | 6694 | 0.185901 | AAGAAGCCCCTGAAGCACAA | 59.814 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
4605 | 6695 | 0.251077 | AGAAGCCCCTGAAGCACAAG | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
4608 | 6698 | 1.073897 | GCCCCTGAAGCACAAGAGT | 59.926 | 57.895 | 0.00 | 0.00 | 0.00 | 3.24 |
4612 | 6702 | 1.242076 | CCTGAAGCACAAGAGTTGGG | 58.758 | 55.000 | 0.00 | 0.00 | 37.05 | 4.12 |
4618 | 6708 | 3.419793 | CACAAGAGTTGGGCCAGAA | 57.580 | 52.632 | 6.23 | 0.00 | 34.12 | 3.02 |
4624 | 6714 | 0.035915 | GAGTTGGGCCAGAAGAGTCC | 60.036 | 60.000 | 6.23 | 0.00 | 0.00 | 3.85 |
4626 | 6716 | 2.592993 | TTGGGCCAGAAGAGTCCCG | 61.593 | 63.158 | 6.23 | 0.00 | 41.65 | 5.14 |
4631 | 6721 | 1.984570 | CCAGAAGAGTCCCGAGGCA | 60.985 | 63.158 | 0.00 | 0.00 | 0.00 | 4.75 |
4634 | 6724 | 0.832135 | AGAAGAGTCCCGAGGCAACA | 60.832 | 55.000 | 0.00 | 0.00 | 41.41 | 3.33 |
4637 | 6727 | 1.070786 | GAGTCCCGAGGCAACAACA | 59.929 | 57.895 | 0.00 | 0.00 | 41.41 | 3.33 |
4645 | 6735 | 0.467290 | GAGGCAACAACAAGGGTGGA | 60.467 | 55.000 | 0.00 | 0.00 | 41.41 | 4.02 |
4651 | 6741 | 4.660938 | AACAAGGGTGGAGGGCGC | 62.661 | 66.667 | 0.00 | 0.00 | 0.00 | 6.53 |
4690 | 6780 | 4.368003 | CCCCCTACCTTGTCGCTA | 57.632 | 61.111 | 0.00 | 0.00 | 0.00 | 4.26 |
4696 | 6786 | 1.093159 | CTACCTTGTCGCTACCTCGT | 58.907 | 55.000 | 0.00 | 0.00 | 0.00 | 4.18 |
4703 | 6793 | 2.754658 | CGCTACCTCGTGGACCCT | 60.755 | 66.667 | 11.17 | 0.00 | 37.04 | 4.34 |
4705 | 6795 | 2.424733 | GCTACCTCGTGGACCCTCC | 61.425 | 68.421 | 11.17 | 0.00 | 36.96 | 4.30 |
4712 | 6802 | 0.406750 | TCGTGGACCCTCCTGACTTA | 59.593 | 55.000 | 0.00 | 0.00 | 37.46 | 2.24 |
4713 | 6803 | 1.203087 | TCGTGGACCCTCCTGACTTAA | 60.203 | 52.381 | 0.00 | 0.00 | 37.46 | 1.85 |
4714 | 6804 | 1.621814 | CGTGGACCCTCCTGACTTAAA | 59.378 | 52.381 | 0.00 | 0.00 | 37.46 | 1.52 |
4715 | 6805 | 2.038033 | CGTGGACCCTCCTGACTTAAAA | 59.962 | 50.000 | 0.00 | 0.00 | 37.46 | 1.52 |
4716 | 6806 | 3.409570 | GTGGACCCTCCTGACTTAAAAC | 58.590 | 50.000 | 0.00 | 0.00 | 37.46 | 2.43 |
4717 | 6807 | 2.374170 | TGGACCCTCCTGACTTAAAACC | 59.626 | 50.000 | 0.00 | 0.00 | 37.46 | 3.27 |
4718 | 6808 | 2.614734 | GGACCCTCCTGACTTAAAACCG | 60.615 | 54.545 | 0.00 | 0.00 | 32.53 | 4.44 |
4719 | 6809 | 2.301009 | GACCCTCCTGACTTAAAACCGA | 59.699 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
4720 | 6810 | 2.038164 | ACCCTCCTGACTTAAAACCGAC | 59.962 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4721 | 6811 | 2.334838 | CCTCCTGACTTAAAACCGACG | 58.665 | 52.381 | 0.00 | 0.00 | 0.00 | 5.12 |
4722 | 6812 | 1.725164 | CTCCTGACTTAAAACCGACGC | 59.275 | 52.381 | 0.00 | 0.00 | 0.00 | 5.19 |
4723 | 6813 | 1.342174 | TCCTGACTTAAAACCGACGCT | 59.658 | 47.619 | 0.00 | 0.00 | 0.00 | 5.07 |
4724 | 6814 | 2.557924 | TCCTGACTTAAAACCGACGCTA | 59.442 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
4725 | 6815 | 3.005684 | TCCTGACTTAAAACCGACGCTAA | 59.994 | 43.478 | 0.00 | 0.00 | 0.00 | 3.09 |
4726 | 6816 | 3.742369 | CCTGACTTAAAACCGACGCTAAA | 59.258 | 43.478 | 0.00 | 0.00 | 0.00 | 1.85 |
4727 | 6817 | 4.211794 | CCTGACTTAAAACCGACGCTAAAA | 59.788 | 41.667 | 0.00 | 0.00 | 0.00 | 1.52 |
4728 | 6818 | 5.277442 | CCTGACTTAAAACCGACGCTAAAAA | 60.277 | 40.000 | 0.00 | 0.00 | 0.00 | 1.94 |
4729 | 6819 | 6.303021 | TGACTTAAAACCGACGCTAAAAAT | 57.697 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
4730 | 6820 | 6.727215 | TGACTTAAAACCGACGCTAAAAATT | 58.273 | 32.000 | 0.00 | 0.00 | 0.00 | 1.82 |
4731 | 6821 | 6.852345 | TGACTTAAAACCGACGCTAAAAATTC | 59.148 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
4732 | 6822 | 6.727215 | ACTTAAAACCGACGCTAAAAATTCA | 58.273 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
4733 | 6823 | 7.364970 | ACTTAAAACCGACGCTAAAAATTCAT | 58.635 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
4734 | 6824 | 8.505625 | ACTTAAAACCGACGCTAAAAATTCATA | 58.494 | 29.630 | 0.00 | 0.00 | 0.00 | 2.15 |
4735 | 6825 | 9.498307 | CTTAAAACCGACGCTAAAAATTCATAT | 57.502 | 29.630 | 0.00 | 0.00 | 0.00 | 1.78 |
4738 | 6828 | 9.843334 | AAAACCGACGCTAAAAATTCATATAAA | 57.157 | 25.926 | 0.00 | 0.00 | 0.00 | 1.40 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
11 | 12 | 2.012673 | GACCAAGTCTGCAGCATAAGG | 58.987 | 52.381 | 9.47 | 9.50 | 0.00 | 2.69 |
52 | 53 | 4.735132 | TGGGACAGCAGCGTACGC | 62.735 | 66.667 | 32.17 | 32.17 | 42.33 | 4.42 |
88 | 89 | 4.753516 | TGTTCACCTTCTGAAGACTTGA | 57.246 | 40.909 | 18.68 | 13.82 | 39.69 | 3.02 |
112 | 113 | 3.556817 | GTGGTCCACATGATCAGCA | 57.443 | 52.632 | 17.59 | 0.00 | 33.82 | 4.41 |
157 | 158 | 2.464157 | ACTACAGGCAAAGAGCTGTC | 57.536 | 50.000 | 0.00 | 0.00 | 44.79 | 3.51 |
159 | 160 | 2.351157 | GCAAACTACAGGCAAAGAGCTG | 60.351 | 50.000 | 0.00 | 0.00 | 44.79 | 4.24 |
230 | 232 | 7.759489 | ATTTAGTCTAGCAAATGAACCAACA | 57.241 | 32.000 | 0.00 | 0.00 | 0.00 | 3.33 |
231 | 233 | 9.937175 | GATATTTAGTCTAGCAAATGAACCAAC | 57.063 | 33.333 | 6.91 | 0.00 | 0.00 | 3.77 |
233 | 235 | 9.330063 | CTGATATTTAGTCTAGCAAATGAACCA | 57.670 | 33.333 | 6.91 | 0.00 | 0.00 | 3.67 |
261 | 263 | 1.939381 | GCAGCATCCACGTAGAACACA | 60.939 | 52.381 | 0.00 | 0.00 | 0.00 | 3.72 |
409 | 413 | 0.812412 | CCGACTGTCACCCGTTTTGT | 60.812 | 55.000 | 8.73 | 0.00 | 0.00 | 2.83 |
415 | 419 | 2.201732 | CAAATATCCGACTGTCACCCG | 58.798 | 52.381 | 8.73 | 0.00 | 0.00 | 5.28 |
434 | 438 | 2.976882 | ACAAACCCACTAGGCTAGAACA | 59.023 | 45.455 | 27.59 | 0.00 | 40.58 | 3.18 |
571 | 589 | 7.332926 | CCAATCCTAGAGATAAATGGAATCACG | 59.667 | 40.741 | 0.00 | 0.00 | 33.71 | 4.35 |
577 | 595 | 6.393897 | AGACCCAATCCTAGAGATAAATGGA | 58.606 | 40.000 | 9.98 | 0.00 | 33.71 | 3.41 |
579 | 597 | 7.016072 | ACAGAGACCCAATCCTAGAGATAAATG | 59.984 | 40.741 | 0.00 | 0.00 | 33.66 | 2.32 |
607 | 627 | 7.675161 | TCTATGACTTTGACTCATATCCCAA | 57.325 | 36.000 | 0.00 | 0.00 | 31.61 | 4.12 |
627 | 647 | 6.183360 | CCAGTCGAATTTGGAAAGCATTCTAT | 60.183 | 38.462 | 1.19 | 0.00 | 36.55 | 1.98 |
653 | 673 | 7.826252 | CGGATGGAATTCCTATATGAACTTGAT | 59.174 | 37.037 | 24.73 | 5.49 | 36.82 | 2.57 |
747 | 813 | 9.445878 | CAGGATGTATCAATCTACAGCATATTT | 57.554 | 33.333 | 2.44 | 0.00 | 39.25 | 1.40 |
855 | 921 | 5.104900 | ACCAAATTAGCTCAGGAACTCGTAT | 60.105 | 40.000 | 0.00 | 0.00 | 34.60 | 3.06 |
911 | 977 | 0.615331 | TCAATGCAGAGGTCAGGGAC | 59.385 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
928 | 994 | 4.949238 | ACTAATGGCTGTGTGCATTAATCA | 59.051 | 37.500 | 0.00 | 0.00 | 45.15 | 2.57 |
978 | 1044 | 7.975616 | GCCATTTGATCTAAACAGCAAAGATAA | 59.024 | 33.333 | 0.00 | 0.00 | 34.21 | 1.75 |
1157 | 1225 | 4.202357 | TGCCTATCTGCCTTATAACAGTGG | 60.202 | 45.833 | 0.00 | 5.93 | 35.37 | 4.00 |
1160 | 1228 | 3.990469 | CGTGCCTATCTGCCTTATAACAG | 59.010 | 47.826 | 0.00 | 0.00 | 35.15 | 3.16 |
1377 | 1463 | 9.930158 | ATAACTAGTTGAATCTCCTTCTCTACT | 57.070 | 33.333 | 18.56 | 0.00 | 34.75 | 2.57 |
1443 | 1535 | 5.767670 | TCTATCTCAGTAAGTGGGTTAGCT | 58.232 | 41.667 | 0.00 | 0.00 | 31.25 | 3.32 |
1464 | 1556 | 0.321122 | CTTGAGACCGCTGCCTTTCT | 60.321 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1479 | 1571 | 3.795688 | AATTCTGGGAAGCTGTCTTGA | 57.204 | 42.857 | 0.00 | 0.00 | 31.48 | 3.02 |
1878 | 2428 | 6.644592 | GGAGAGCATCATGTATCTGAAAGTAC | 59.355 | 42.308 | 0.00 | 0.00 | 37.82 | 2.73 |
1884 | 2436 | 3.577415 | CCTGGAGAGCATCATGTATCTGA | 59.423 | 47.826 | 0.00 | 0.00 | 37.82 | 3.27 |
1916 | 2468 | 4.804139 | GTGTCGTAATGATGATCCGACTTT | 59.196 | 41.667 | 18.00 | 4.48 | 45.87 | 2.66 |
2064 | 4081 | 4.688045 | GCAATCATCTCAAGATCCTTGGGA | 60.688 | 45.833 | 11.19 | 11.19 | 35.55 | 4.37 |
2244 | 4261 | 1.139853 | GGAAGGTCATGGTAGCTCAGG | 59.860 | 57.143 | 0.00 | 0.00 | 0.00 | 3.86 |
2451 | 4468 | 4.961730 | ACTCTACCAAGCTCATCATTCTCT | 59.038 | 41.667 | 0.00 | 0.00 | 0.00 | 3.10 |
2517 | 4534 | 7.517321 | CAAATCTCTCTTCTTTAGCAACAGAC | 58.483 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
2627 | 4679 | 4.292977 | AGTTTAACTTTCACTGCAGTGC | 57.707 | 40.909 | 36.76 | 21.39 | 45.25 | 4.40 |
2958 | 5011 | 3.995705 | GCTTCTCATCAGCATATCTGTCC | 59.004 | 47.826 | 0.00 | 0.00 | 43.32 | 4.02 |
3669 | 5728 | 3.750130 | CAGTGTCCCATTGAGTTCTGAAG | 59.250 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
3959 | 6044 | 5.036117 | ACAACAGAAACAGTACAGTCCAT | 57.964 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
3970 | 6055 | 6.373216 | AGTGTGTAGCTTAAACAACAGAAACA | 59.627 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
4104 | 6192 | 8.520351 | GGTAAAATAATAATGGGGTGACATAGC | 58.480 | 37.037 | 0.00 | 0.00 | 0.00 | 2.97 |
4151 | 6239 | 9.326413 | GCTCTAGAGGCAATAATAAAGTTGTTA | 57.674 | 33.333 | 21.23 | 0.00 | 0.00 | 2.41 |
4152 | 6240 | 7.829211 | TGCTCTAGAGGCAATAATAAAGTTGTT | 59.171 | 33.333 | 21.23 | 0.00 | 36.71 | 2.83 |
4153 | 6241 | 7.338710 | TGCTCTAGAGGCAATAATAAAGTTGT | 58.661 | 34.615 | 21.23 | 0.00 | 36.71 | 3.32 |
4154 | 6242 | 7.792374 | TGCTCTAGAGGCAATAATAAAGTTG | 57.208 | 36.000 | 21.23 | 0.00 | 36.71 | 3.16 |
4161 | 6249 | 9.804977 | AAGAAAATATGCTCTAGAGGCAATAAT | 57.195 | 29.630 | 21.23 | 11.28 | 43.14 | 1.28 |
4162 | 6250 | 9.277783 | GAAGAAAATATGCTCTAGAGGCAATAA | 57.722 | 33.333 | 21.23 | 9.78 | 43.14 | 1.40 |
4163 | 6251 | 8.432013 | TGAAGAAAATATGCTCTAGAGGCAATA | 58.568 | 33.333 | 21.23 | 12.68 | 43.14 | 1.90 |
4164 | 6252 | 7.285566 | TGAAGAAAATATGCTCTAGAGGCAAT | 58.714 | 34.615 | 21.23 | 11.82 | 43.14 | 3.56 |
4165 | 6253 | 6.653020 | TGAAGAAAATATGCTCTAGAGGCAA | 58.347 | 36.000 | 21.23 | 10.37 | 43.14 | 4.52 |
4166 | 6254 | 6.239217 | TGAAGAAAATATGCTCTAGAGGCA | 57.761 | 37.500 | 21.23 | 18.27 | 44.05 | 4.75 |
4167 | 6255 | 7.742556 | ATTGAAGAAAATATGCTCTAGAGGC | 57.257 | 36.000 | 21.23 | 13.48 | 0.00 | 4.70 |
4168 | 6256 | 9.995003 | AGTATTGAAGAAAATATGCTCTAGAGG | 57.005 | 33.333 | 21.23 | 3.52 | 0.00 | 3.69 |
4192 | 6280 | 9.109393 | ACGCTTAACATTTGTTGATGATATAGT | 57.891 | 29.630 | 6.21 | 0.00 | 38.90 | 2.12 |
4193 | 6281 | 9.373750 | CACGCTTAACATTTGTTGATGATATAG | 57.626 | 33.333 | 6.21 | 0.00 | 38.90 | 1.31 |
4194 | 6282 | 7.855409 | GCACGCTTAACATTTGTTGATGATATA | 59.145 | 33.333 | 6.21 | 0.00 | 38.90 | 0.86 |
4195 | 6283 | 6.692681 | GCACGCTTAACATTTGTTGATGATAT | 59.307 | 34.615 | 6.21 | 0.00 | 38.90 | 1.63 |
4196 | 6284 | 6.027131 | GCACGCTTAACATTTGTTGATGATA | 58.973 | 36.000 | 6.21 | 0.00 | 38.90 | 2.15 |
4200 | 6288 | 3.233578 | CGCACGCTTAACATTTGTTGAT | 58.766 | 40.909 | 6.21 | 0.00 | 38.90 | 2.57 |
4204 | 6292 | 1.069500 | GTCCGCACGCTTAACATTTGT | 60.069 | 47.619 | 0.00 | 0.00 | 0.00 | 2.83 |
4206 | 6294 | 0.519961 | GGTCCGCACGCTTAACATTT | 59.480 | 50.000 | 0.00 | 0.00 | 0.00 | 2.32 |
4209 | 6297 | 1.534336 | TAGGGTCCGCACGCTTAACA | 61.534 | 55.000 | 0.00 | 0.00 | 43.11 | 2.41 |
4229 | 6317 | 5.897377 | TGTCTACATCATTCTCGAACTCA | 57.103 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
4231 | 6319 | 6.456795 | TCATGTCTACATCATTCTCGAACT | 57.543 | 37.500 | 0.00 | 0.00 | 33.61 | 3.01 |
4241 | 6329 | 4.751600 | GGCATTTCGATCATGTCTACATCA | 59.248 | 41.667 | 6.90 | 0.00 | 33.61 | 3.07 |
4242 | 6330 | 4.993584 | AGGCATTTCGATCATGTCTACATC | 59.006 | 41.667 | 9.84 | 0.00 | 34.73 | 3.06 |
4255 | 6343 | 1.187974 | TAACCGGAGAGGCATTTCGA | 58.812 | 50.000 | 9.46 | 0.00 | 46.52 | 3.71 |
4259 | 6347 | 5.304686 | TGATTATTAACCGGAGAGGCATT | 57.695 | 39.130 | 9.46 | 0.00 | 46.52 | 3.56 |
4261 | 6349 | 4.764050 | TTGATTATTAACCGGAGAGGCA | 57.236 | 40.909 | 9.46 | 0.00 | 46.52 | 4.75 |
4262 | 6350 | 5.351740 | GCTATTGATTATTAACCGGAGAGGC | 59.648 | 44.000 | 9.46 | 0.00 | 46.52 | 4.70 |
4264 | 6352 | 5.577164 | CCGCTATTGATTATTAACCGGAGAG | 59.423 | 44.000 | 9.46 | 0.00 | 35.50 | 3.20 |
4273 | 6361 | 8.148351 | GCATATAGGTCCCGCTATTGATTATTA | 58.852 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
4279 | 6367 | 2.500098 | GGCATATAGGTCCCGCTATTGA | 59.500 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
4289 | 6377 | 5.044846 | AGGAACCAATATGGGCATATAGGTC | 60.045 | 44.000 | 0.00 | 0.00 | 43.37 | 3.85 |
4295 | 6383 | 5.858876 | ATGTAGGAACCAATATGGGCATA | 57.141 | 39.130 | 0.00 | 0.00 | 43.37 | 3.14 |
4298 | 6386 | 6.485171 | AGAATATGTAGGAACCAATATGGGC | 58.515 | 40.000 | 0.00 | 0.00 | 43.37 | 5.36 |
4300 | 6388 | 8.528643 | TCGTAGAATATGTAGGAACCAATATGG | 58.471 | 37.037 | 0.00 | 0.00 | 45.02 | 2.74 |
4342 | 6430 | 8.328864 | GTTGAAGACGTATCATCATAAAGGTTC | 58.671 | 37.037 | 4.53 | 0.00 | 32.80 | 3.62 |
4345 | 6433 | 6.867388 | CGTTGAAGACGTATCATCATAAAGG | 58.133 | 40.000 | 4.53 | 0.00 | 46.49 | 3.11 |
4456 | 6544 | 6.271624 | GGGCTCTAGGTTAATAGGTTAATCCA | 59.728 | 42.308 | 0.00 | 0.00 | 39.02 | 3.41 |
4459 | 6547 | 7.701257 | TTGGGCTCTAGGTTAATAGGTTAAT | 57.299 | 36.000 | 0.00 | 0.00 | 32.76 | 1.40 |
4460 | 6548 | 7.514721 | CATTGGGCTCTAGGTTAATAGGTTAA | 58.485 | 38.462 | 0.00 | 0.00 | 0.00 | 2.01 |
4473 | 6562 | 2.134789 | AAACTGGCATTGGGCTCTAG | 57.865 | 50.000 | 0.00 | 0.00 | 44.01 | 2.43 |
4517 | 6606 | 8.624367 | TCCGTTTGATATTCCTTTTCTGTAAA | 57.376 | 30.769 | 0.00 | 0.00 | 0.00 | 2.01 |
4519 | 6608 | 7.391620 | ACTCCGTTTGATATTCCTTTTCTGTA | 58.608 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
4520 | 6609 | 6.238648 | ACTCCGTTTGATATTCCTTTTCTGT | 58.761 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
4532 | 6621 | 2.991190 | GCTCGTTTGACTCCGTTTGATA | 59.009 | 45.455 | 0.00 | 0.00 | 0.00 | 2.15 |
4534 | 6623 | 1.202486 | AGCTCGTTTGACTCCGTTTGA | 60.202 | 47.619 | 0.00 | 0.00 | 0.00 | 2.69 |
4539 | 6628 | 0.319555 | TTCCAGCTCGTTTGACTCCG | 60.320 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
4540 | 6629 | 1.878953 | TTTCCAGCTCGTTTGACTCC | 58.121 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4546 | 6635 | 3.058501 | CACCGTAAATTTCCAGCTCGTTT | 60.059 | 43.478 | 0.00 | 0.00 | 0.00 | 3.60 |
4549 | 6638 | 2.343101 | TCACCGTAAATTTCCAGCTCG | 58.657 | 47.619 | 0.00 | 0.00 | 0.00 | 5.03 |
4550 | 6639 | 4.965119 | AATCACCGTAAATTTCCAGCTC | 57.035 | 40.909 | 0.00 | 0.00 | 0.00 | 4.09 |
4551 | 6640 | 5.722021 | AAAATCACCGTAAATTTCCAGCT | 57.278 | 34.783 | 0.00 | 0.00 | 0.00 | 4.24 |
4572 | 6662 | 4.230502 | AGGGGCTTCTTCTGATCCATAAAA | 59.769 | 41.667 | 0.00 | 0.00 | 0.00 | 1.52 |
4576 | 6666 | 1.493871 | CAGGGGCTTCTTCTGATCCAT | 59.506 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
4581 | 6671 | 0.326264 | GCTTCAGGGGCTTCTTCTGA | 59.674 | 55.000 | 0.00 | 0.00 | 35.95 | 3.27 |
4594 | 6684 | 0.595095 | GCCCAACTCTTGTGCTTCAG | 59.405 | 55.000 | 0.00 | 0.00 | 31.00 | 3.02 |
4595 | 6685 | 0.823356 | GGCCCAACTCTTGTGCTTCA | 60.823 | 55.000 | 0.00 | 0.00 | 34.31 | 3.02 |
4597 | 6687 | 0.825010 | CTGGCCCAACTCTTGTGCTT | 60.825 | 55.000 | 0.00 | 0.00 | 34.31 | 3.91 |
4600 | 6690 | 1.202806 | TCTTCTGGCCCAACTCTTGTG | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 3.33 |
4602 | 6692 | 1.072965 | ACTCTTCTGGCCCAACTCTTG | 59.927 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
4603 | 6693 | 1.349357 | GACTCTTCTGGCCCAACTCTT | 59.651 | 52.381 | 0.00 | 0.00 | 0.00 | 2.85 |
4604 | 6694 | 0.980423 | GACTCTTCTGGCCCAACTCT | 59.020 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
4605 | 6695 | 0.035915 | GGACTCTTCTGGCCCAACTC | 60.036 | 60.000 | 0.00 | 0.00 | 0.00 | 3.01 |
4608 | 6698 | 2.592993 | CGGGACTCTTCTGGCCCAA | 61.593 | 63.158 | 0.00 | 0.00 | 40.71 | 4.12 |
4612 | 6702 | 2.896443 | CCTCGGGACTCTTCTGGC | 59.104 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
4618 | 6708 | 1.371558 | GTTGTTGCCTCGGGACTCT | 59.628 | 57.895 | 0.00 | 0.00 | 0.00 | 3.24 |
4624 | 6714 | 1.528309 | ACCCTTGTTGTTGCCTCGG | 60.528 | 57.895 | 0.00 | 0.00 | 0.00 | 4.63 |
4626 | 6716 | 0.467290 | TCCACCCTTGTTGTTGCCTC | 60.467 | 55.000 | 0.00 | 0.00 | 0.00 | 4.70 |
4631 | 6721 | 1.152546 | GCCCTCCACCCTTGTTGTT | 60.153 | 57.895 | 0.00 | 0.00 | 0.00 | 2.83 |
4634 | 6724 | 4.660938 | GCGCCCTCCACCCTTGTT | 62.661 | 66.667 | 0.00 | 0.00 | 0.00 | 2.83 |
4673 | 6763 | 1.683418 | GGTAGCGACAAGGTAGGGGG | 61.683 | 65.000 | 0.00 | 0.00 | 32.89 | 5.40 |
4680 | 6770 | 1.153823 | CCACGAGGTAGCGACAAGG | 60.154 | 63.158 | 0.00 | 0.00 | 34.83 | 3.61 |
4683 | 6773 | 2.338015 | GGTCCACGAGGTAGCGACA | 61.338 | 63.158 | 0.00 | 0.00 | 35.89 | 4.35 |
4686 | 6776 | 2.754658 | AGGGTCCACGAGGTAGCG | 60.755 | 66.667 | 0.00 | 0.00 | 35.89 | 4.26 |
4689 | 6779 | 1.000019 | CAGGAGGGTCCACGAGGTA | 60.000 | 63.158 | 0.00 | 0.00 | 39.61 | 3.08 |
4690 | 6780 | 2.283966 | CAGGAGGGTCCACGAGGT | 60.284 | 66.667 | 0.00 | 0.00 | 39.61 | 3.85 |
4696 | 6786 | 2.374170 | GGTTTTAAGTCAGGAGGGTCCA | 59.626 | 50.000 | 0.00 | 0.00 | 39.61 | 4.02 |
4703 | 6793 | 1.342174 | AGCGTCGGTTTTAAGTCAGGA | 59.658 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
4705 | 6795 | 4.977741 | TTTAGCGTCGGTTTTAAGTCAG | 57.022 | 40.909 | 0.65 | 0.00 | 0.00 | 3.51 |
4712 | 6802 | 9.843334 | TTTATATGAATTTTTAGCGTCGGTTTT | 57.157 | 25.926 | 0.65 | 0.00 | 0.00 | 2.43 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.