Multiple sequence alignment - TraesCS4A01G223700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G223700 chr4A 100.000 5914 0 0 1 5914 531310137 531304224 0.000000e+00 10922.0
1 TraesCS4A01G223700 chr4A 88.755 3308 352 18 2617 5914 5734270 5730973 0.000000e+00 4030.0
2 TraesCS4A01G223700 chr4A 100.000 402 0 0 6314 6715 531303824 531303423 0.000000e+00 743.0
3 TraesCS4A01G223700 chr4A 87.578 161 15 5 6314 6472 531325737 531325580 1.490000e-41 182.0
4 TraesCS4A01G223700 chr4A 84.545 110 5 4 6374 6472 531246755 531246647 1.540000e-16 99.0
5 TraesCS4A01G223700 chr7A 89.018 5928 613 25 1 5913 78843071 78848975 0.000000e+00 7306.0
6 TraesCS4A01G223700 chr1A 88.330 5921 664 23 4 5914 461263674 461257771 0.000000e+00 7081.0
7 TraesCS4A01G223700 chr1A 85.910 5905 792 35 1 5888 405541817 405547698 0.000000e+00 6259.0
8 TraesCS4A01G223700 chr7D 87.076 5896 738 21 4 5888 605088892 605083010 0.000000e+00 6645.0
9 TraesCS4A01G223700 chr7D 83.851 3158 484 19 19 3167 417915727 417918867 0.000000e+00 2983.0
10 TraesCS4A01G223700 chr3D 86.902 5894 742 25 4 5888 606146148 606140276 0.000000e+00 6580.0
11 TraesCS4A01G223700 chr6B 89.350 4535 473 6 5 4538 15778444 15773919 0.000000e+00 5690.0
12 TraesCS4A01G223700 chr5B 89.792 4183 406 14 1745 5913 396819916 396824091 0.000000e+00 5339.0
13 TraesCS4A01G223700 chr5B 87.583 1659 183 12 1 1641 396818261 396819914 0.000000e+00 1901.0
14 TraesCS4A01G223700 chr4D 87.895 3825 446 14 2065 5878 73417237 73421055 0.000000e+00 4482.0
15 TraesCS4A01G223700 chr2D 86.206 3922 529 8 4 3923 11502869 11498958 0.000000e+00 4235.0
16 TraesCS4A01G223700 chr4B 94.089 406 14 7 6314 6715 95218992 95219391 5.760000e-170 608.0
17 TraesCS4A01G223700 chr4B 91.503 153 9 4 6322 6472 95109671 95109821 2.450000e-49 207.0
18 TraesCS4A01G223700 chr4B 83.333 174 13 9 6314 6472 95319010 95319182 5.430000e-31 147.0
19 TraesCS4A01G223700 chr3A 94.898 196 9 1 5720 5914 723654889 723655084 8.460000e-79 305.0
20 TraesCS4A01G223700 chr3B 100.000 29 0 0 6678 6706 490598065 490598093 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G223700 chr4A 531303423 531310137 6714 True 5832.5 10922 100.0000 1 6715 2 chr4A.!!$R4 6714
1 TraesCS4A01G223700 chr4A 5730973 5734270 3297 True 4030.0 4030 88.7550 2617 5914 1 chr4A.!!$R1 3297
2 TraesCS4A01G223700 chr7A 78843071 78848975 5904 False 7306.0 7306 89.0180 1 5913 1 chr7A.!!$F1 5912
3 TraesCS4A01G223700 chr1A 461257771 461263674 5903 True 7081.0 7081 88.3300 4 5914 1 chr1A.!!$R1 5910
4 TraesCS4A01G223700 chr1A 405541817 405547698 5881 False 6259.0 6259 85.9100 1 5888 1 chr1A.!!$F1 5887
5 TraesCS4A01G223700 chr7D 605083010 605088892 5882 True 6645.0 6645 87.0760 4 5888 1 chr7D.!!$R1 5884
6 TraesCS4A01G223700 chr7D 417915727 417918867 3140 False 2983.0 2983 83.8510 19 3167 1 chr7D.!!$F1 3148
7 TraesCS4A01G223700 chr3D 606140276 606146148 5872 True 6580.0 6580 86.9020 4 5888 1 chr3D.!!$R1 5884
8 TraesCS4A01G223700 chr6B 15773919 15778444 4525 True 5690.0 5690 89.3500 5 4538 1 chr6B.!!$R1 4533
9 TraesCS4A01G223700 chr5B 396818261 396824091 5830 False 3620.0 5339 88.6875 1 5913 2 chr5B.!!$F1 5912
10 TraesCS4A01G223700 chr4D 73417237 73421055 3818 False 4482.0 4482 87.8950 2065 5878 1 chr4D.!!$F1 3813
11 TraesCS4A01G223700 chr2D 11498958 11502869 3911 True 4235.0 4235 86.2060 4 3923 1 chr2D.!!$R1 3919

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
275 297 0.036010 CGACAGTCCCAGCTCCAATT 60.036 55.000 0.0 0.0 0.00 2.32 F
854 878 0.400213 CCTCCAAAGTGGTGTGCCTA 59.600 55.000 0.0 0.0 39.03 3.93 F
2756 2792 0.030195 TGGGAGTGATCATGCCCCTA 60.030 55.000 24.9 11.0 39.93 3.53 F
2872 2908 0.608130 GCAAGATTTGGAACACCCCC 59.392 55.000 0.0 0.0 39.29 5.40 F
3268 3305 1.072331 ACCAACGAGATGCTGGAAGTT 59.928 47.619 0.0 0.0 35.74 2.66 F
5005 5055 0.030195 TGGCTCAGGTATGGGATGGA 60.030 55.000 0.0 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1568 1597 0.173481 CGATTCCACGCTCTCCAGAA 59.827 55.000 0.00 0.0 0.00 3.02 R
2809 2845 0.310854 GGTCAAGCCACCACTTTTCG 59.689 55.000 0.00 0.0 36.32 3.46 R
4620 4666 0.037734 CCACCTAGTGACAAACCCCC 59.962 60.000 0.00 0.0 35.23 5.40 R
4786 4835 2.158325 ACCATCTCCTTTTGCCCAAAGA 60.158 45.455 6.99 0.0 44.40 2.52 R
5117 5168 1.518367 AGGTTCCAAGGACCAGTTCA 58.482 50.000 0.00 0.0 0.00 3.18 R
6323 6393 0.107017 CCTCATCCCCATTTCGCTGT 60.107 55.000 0.00 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.553330 AAATTTCCACCGAGAAGCTAGA 57.447 40.909 0.00 0.00 0.00 2.43
123 124 0.768221 TCCACTGCCAGGGAAGAAGT 60.768 55.000 0.00 0.00 0.00 3.01
125 126 0.671781 CACTGCCAGGGAAGAAGTCG 60.672 60.000 0.00 0.00 0.00 4.18
146 147 0.819666 CGCCTTAGGATGGGAAAGCC 60.820 60.000 0.69 0.00 32.98 4.35
151 152 1.632018 TAGGATGGGAAAGCCACGGG 61.632 60.000 0.00 0.00 36.50 5.28
183 184 2.749839 GTGCGGCTATGGTGGCAA 60.750 61.111 0.00 0.00 37.12 4.52
246 268 0.899717 GGGGATCCAACAGCAGCAAA 60.900 55.000 15.23 0.00 0.00 3.68
273 295 3.059982 CGACAGTCCCAGCTCCAA 58.940 61.111 0.00 0.00 0.00 3.53
274 296 1.599047 CGACAGTCCCAGCTCCAAT 59.401 57.895 0.00 0.00 0.00 3.16
275 297 0.036010 CGACAGTCCCAGCTCCAATT 60.036 55.000 0.00 0.00 0.00 2.32
292 314 2.307098 CAATTCCTCCTCCTCCTGTTGT 59.693 50.000 0.00 0.00 0.00 3.32
295 317 3.491766 TCCTCCTCCTCCTGTTGTTAT 57.508 47.619 0.00 0.00 0.00 1.89
314 336 3.567478 ATAGTTCAAGCACTGGATCCC 57.433 47.619 9.90 0.00 0.00 3.85
331 353 4.141390 GGATCCCAGGTACAAAGACATGAT 60.141 45.833 0.00 0.00 32.92 2.45
359 381 3.016971 TGTAGCTGGCCAGGGCAT 61.017 61.111 33.46 13.34 44.11 4.40
402 424 3.925913 GCCGAAGAAATGCTTTATTTGCA 59.074 39.130 0.00 0.00 44.95 4.08
461 483 2.126071 CCACACCCTACAGCGACG 60.126 66.667 0.00 0.00 0.00 5.12
488 510 2.291346 TGGTAGTGTAGCAGCTGGTCTA 60.291 50.000 23.94 14.80 0.00 2.59
527 550 3.930336 TGTTCCTACTGCATCAGAACTG 58.070 45.455 15.62 0.00 38.10 3.16
529 552 4.040339 TGTTCCTACTGCATCAGAACTGAA 59.960 41.667 8.59 0.00 43.58 3.02
536 559 1.736681 GCATCAGAACTGAACTGGCTC 59.263 52.381 8.59 0.00 43.58 4.70
569 592 4.675510 ACTGTGCAGTTCTCAAAATTGTG 58.324 39.130 0.00 0.00 38.83 3.33
578 601 5.656416 AGTTCTCAAAATTGTGAAGGGTGAA 59.344 36.000 10.05 0.00 40.17 3.18
616 640 3.726557 ACTGATTCAGCTCAATGGGAA 57.273 42.857 13.64 0.00 34.37 3.97
765 789 6.906157 ATTGATGGTGTTTCTGTCAAGATT 57.094 33.333 0.00 0.00 32.93 2.40
854 878 0.400213 CCTCCAAAGTGGTGTGCCTA 59.600 55.000 0.00 0.00 39.03 3.93
867 891 1.133945 TGTGCCTAGAAGGTGTTTGCA 60.134 47.619 0.00 0.00 37.80 4.08
885 909 6.183360 TGTTTGCACAGATTACAACTTGCTTA 60.183 34.615 0.00 0.00 0.00 3.09
897 921 2.279173 ACTTGCTTAGGGATCCTGGTT 58.721 47.619 12.58 0.00 34.61 3.67
903 927 3.391296 GCTTAGGGATCCTGGTTGATGTA 59.609 47.826 12.58 0.00 34.61 2.29
978 1002 4.518249 CTTGTAGAGACCCCAGGAAAATC 58.482 47.826 0.00 0.00 0.00 2.17
1097 1121 4.403752 TGATCTAGACCCAGATGTTGACAG 59.596 45.833 0.00 0.00 35.37 3.51
1135 1163 7.066766 AGGAAGAAGATAACAATGAAGACATGC 59.933 37.037 0.00 0.00 36.79 4.06
1225 1253 6.575244 TTCCTTCCAAGAATAATCTGGCTA 57.425 37.500 0.00 0.00 35.59 3.93
1329 1357 6.837312 TGAGGACTTTGTGGAAGAAATTAGA 58.163 36.000 0.00 0.00 38.77 2.10
1330 1358 7.461749 TGAGGACTTTGTGGAAGAAATTAGAT 58.538 34.615 0.00 0.00 38.77 1.98
1349 1377 4.577875 AGATGCAAAACTCCTGAGAAGAG 58.422 43.478 0.22 0.00 37.39 2.85
1364 1392 2.571202 AGAAGAGGGAAGAGGCAGAAAG 59.429 50.000 0.00 0.00 0.00 2.62
1377 1405 3.960102 AGGCAGAAAGTGAAAAATCCACA 59.040 39.130 0.00 0.00 37.01 4.17
1381 1410 5.009610 GCAGAAAGTGAAAAATCCACACCTA 59.990 40.000 0.00 0.00 37.01 3.08
1422 1451 2.264455 AGACCTGATTCCTTGTCAGCT 58.736 47.619 0.00 0.00 41.33 4.24
1536 1565 1.470285 CCTGATGATTTGGCTTTGGCG 60.470 52.381 0.00 0.00 39.81 5.69
1568 1597 7.127032 ATCTGTCAAGAGATCCTTACTGGAAAT 59.873 37.037 0.00 0.00 41.54 2.17
1578 1607 4.080863 TCCTTACTGGAAATTCTGGAGAGC 60.081 45.833 0.00 0.00 42.94 4.09
1679 1708 2.485479 CCAGGAATCATGGGGACGTTAG 60.485 54.545 5.96 0.00 33.94 2.34
1712 1741 1.282248 GCAGCTGCGTACGTGAAGAA 61.282 55.000 25.23 0.00 0.00 2.52
1765 1794 7.282675 TCAAAGGTAAATCGTTTGTTGTCCTTA 59.717 33.333 11.01 0.00 45.95 2.69
1834 1863 7.387397 GCATTGGGAATAACATTGAAGAACAAA 59.613 33.333 0.00 0.00 42.03 2.83
1872 1901 9.956640 ATGGATATGATAGATGAGGAGAAAAAC 57.043 33.333 0.00 0.00 0.00 2.43
1915 1944 8.520745 CGGATGATAATCCAGAGATTGTTCTCG 61.521 44.444 9.93 0.00 42.78 4.04
1953 1982 6.621514 ACTTAGAAATAGGGGGTGATGAGATT 59.378 38.462 0.00 0.00 0.00 2.40
2126 2156 2.131023 TGGGCCAAACTGGGAAAAATT 58.869 42.857 2.13 0.00 38.19 1.82
2135 2165 6.239458 CCAAACTGGGAAAAATTAGTGCCTAA 60.239 38.462 1.35 0.00 32.67 2.69
2185 2217 7.158021 TGGATTTTGTGTGTTTCTTTGAAACT 58.842 30.769 19.52 2.15 0.00 2.66
2230 2262 6.048732 TGTGTGCTTAGATACATTTCTGGA 57.951 37.500 0.00 0.00 0.00 3.86
2303 2335 2.408565 TCCTTGTGGGTCTCAAGAGTT 58.591 47.619 10.21 0.00 43.17 3.01
2305 2337 3.323979 TCCTTGTGGGTCTCAAGAGTTAC 59.676 47.826 10.21 0.00 43.17 2.50
2323 2355 8.611051 AGAGTTACTTATTTGAGGTGATAGGT 57.389 34.615 0.00 0.00 0.00 3.08
2389 2421 6.799926 AAATGTGATGGTTTTATTTGGCAC 57.200 33.333 0.00 0.00 0.00 5.01
2396 2428 6.491745 TGATGGTTTTATTTGGCACTTAGTGA 59.508 34.615 17.40 0.00 35.23 3.41
2482 2514 2.699321 GGATACCCTCACTTACCCAGTC 59.301 54.545 0.00 0.00 30.92 3.51
2610 2642 1.205655 CCTTGTGGAGATCAAGAGCGA 59.794 52.381 7.16 0.00 43.17 4.93
2679 2712 8.446599 TTTGCTACTATAGATAGGGTTTTTGC 57.553 34.615 6.78 0.00 34.69 3.68
2756 2792 0.030195 TGGGAGTGATCATGCCCCTA 60.030 55.000 24.90 11.00 39.93 3.53
2759 2795 1.004044 GGAGTGATCATGCCCCTATGG 59.996 57.143 0.00 0.00 37.09 2.74
2770 2806 2.218603 GCCCCTATGGTTATTGACACG 58.781 52.381 0.00 0.00 36.04 4.49
2805 2841 2.605825 ACCTCCCCCAAGATATTCCA 57.394 50.000 0.00 0.00 0.00 3.53
2809 2845 3.181439 CCTCCCCCAAGATATTCCAGTTC 60.181 52.174 0.00 0.00 0.00 3.01
2857 2893 7.137490 TGATTTCAAAGATCTAGTGTGCAAG 57.863 36.000 0.00 0.00 0.00 4.01
2872 2908 0.608130 GCAAGATTTGGAACACCCCC 59.392 55.000 0.00 0.00 39.29 5.40
2903 2939 2.180276 GGACGGCCATAGATATCTGGT 58.820 52.381 15.79 1.08 34.86 4.00
3035 3072 5.689383 TGTCTTTTCGGAAAGGAATCAAG 57.311 39.130 16.19 3.72 42.05 3.02
3043 3080 5.312895 TCGGAAAGGAATCAAGTCAATGAA 58.687 37.500 0.00 0.00 32.06 2.57
3064 3101 6.143206 TGAAGTGGATAGACATAGGATGGAA 58.857 40.000 0.00 0.00 33.60 3.53
3072 3109 8.912988 GGATAGACATAGGATGGAAGAGATTAG 58.087 40.741 0.00 0.00 33.60 1.73
3253 3290 3.036091 TGGCCCTGTCTATAGTACCAAC 58.964 50.000 0.00 0.00 0.00 3.77
3268 3305 1.072331 ACCAACGAGATGCTGGAAGTT 59.928 47.619 0.00 0.00 35.74 2.66
3276 3313 4.500545 CGAGATGCTGGAAGTTGCTACTAT 60.501 45.833 0.00 0.00 35.30 2.12
3328 3370 2.885135 AACCTCATGTGCATCTTGGA 57.115 45.000 0.00 0.00 0.00 3.53
3365 3407 3.243907 GGAGGATGATCTGGTTACCGAAG 60.244 52.174 0.00 0.00 0.00 3.79
3396 3441 5.667466 TGAACGTCTCCAAAGTAACTTCTT 58.333 37.500 0.00 0.00 0.00 2.52
3421 3466 3.144894 AGGAGGAGATTAAGGAGGCCATA 59.855 47.826 5.01 0.00 0.00 2.74
3600 3645 4.410555 AGTCCTTATTCCTAAAGAGCCTGG 59.589 45.833 0.00 0.00 0.00 4.45
3631 3676 8.608185 AGGATTTGAAGAAATTTAGGCCAATA 57.392 30.769 5.01 0.00 31.58 1.90
3648 3693 4.499696 GCCAATAAGTTTGAGCAACTGTGT 60.500 41.667 0.00 0.00 45.77 3.72
3715 3760 8.798402 CCTATTGGTCGTAGATTAATCTCTTCT 58.202 37.037 21.17 0.82 40.67 2.85
3771 3816 2.146342 AGAAAGTGTTGTCATGGCTCG 58.854 47.619 0.00 0.00 0.00 5.03
3803 3848 7.337689 TGATTCATGAGGTAAAGAAATCTGGTG 59.662 37.037 0.00 0.00 0.00 4.17
3808 3853 4.583871 AGGTAAAGAAATCTGGTGCTCAG 58.416 43.478 1.94 1.94 44.68 3.35
3855 3900 5.123227 TGAAAAAGCCTATGATCGGGTTAG 58.877 41.667 0.64 0.00 41.07 2.34
3880 3925 6.820152 GCTGGGATTTCTTATTTGAAATGCTT 59.180 34.615 16.61 0.00 46.68 3.91
3997 4043 4.810345 ACTATTTTGTTGGTGGGAAAGGA 58.190 39.130 0.00 0.00 0.00 3.36
4012 4058 3.825014 GGAAAGGACTTAAACAAGGGGAC 59.175 47.826 0.00 0.00 0.00 4.46
4095 4141 3.494924 GCAGCTTCCCAAAACCTGATTTT 60.495 43.478 0.00 0.00 41.38 1.82
4123 4169 3.608067 TCTGCCCAATATAATCCCAGGA 58.392 45.455 0.00 0.00 0.00 3.86
4164 4210 3.243336 ACGCAGACGACACTATTCTTTC 58.757 45.455 0.00 0.00 43.93 2.62
4165 4211 2.599082 CGCAGACGACACTATTCTTTCC 59.401 50.000 0.00 0.00 43.93 3.13
4234 4280 9.519191 TTATCATGTTTTGAATCTCTTTCAGGA 57.481 29.630 0.00 0.00 44.90 3.86
4383 4429 6.925165 CCTTTGCACTATGACAAGTTGAAAAT 59.075 34.615 10.54 2.67 0.00 1.82
4453 4499 3.051940 TGGCTTGGGAGATATCTCACT 57.948 47.619 30.32 0.00 46.35 3.41
4594 4640 5.233582 TCTTTTGGGGAAATATTGGGGAT 57.766 39.130 0.00 0.00 0.00 3.85
4602 4648 4.342092 GGGAAATATTGGGGATCAACACAG 59.658 45.833 0.00 0.00 38.31 3.66
4620 4666 8.892723 TCAACACAGATACCATTTAGCTAATTG 58.107 33.333 17.64 17.64 0.00 2.32
4630 4677 5.395214 CCATTTAGCTAATTGGGGGTTTGTC 60.395 44.000 28.50 0.00 34.62 3.18
4637 4684 1.525175 TTGGGGGTTTGTCACTAGGT 58.475 50.000 0.00 0.00 0.00 3.08
4651 4698 5.487488 TGTCACTAGGTGGAAAGAATATGGT 59.513 40.000 0.00 0.00 33.87 3.55
4982 5031 2.969628 TTGCAACCAAACGGAATGTT 57.030 40.000 0.00 0.00 44.59 2.71
5005 5055 0.030195 TGGCTCAGGTATGGGATGGA 60.030 55.000 0.00 0.00 0.00 3.41
5018 5068 3.686016 TGGGATGGACAAGAACTTAAGC 58.314 45.455 1.29 0.00 0.00 3.09
5077 5128 4.002982 CAGATGGGATTCGTTGTTGAGAA 58.997 43.478 0.00 0.00 0.00 2.87
5121 5172 5.363101 TCAGATGAACCTGATATGCTGAAC 58.637 41.667 0.00 0.00 38.18 3.18
5231 5282 5.927819 TGATCTTTGGAAAATTGTTTGCCT 58.072 33.333 1.40 0.00 34.35 4.75
5235 5286 5.584251 TCTTTGGAAAATTGTTTGCCTTCAC 59.416 36.000 1.40 0.00 34.35 3.18
5266 5317 3.951037 TGTATTCTTGTGGTTGTGTGCTT 59.049 39.130 0.00 0.00 0.00 3.91
5362 5414 3.049206 GAGCTCGAATCTGTACAGCATC 58.951 50.000 18.45 16.01 32.17 3.91
5386 5438 5.606505 TGATGTTTGACTGTGTAGTTGCTA 58.393 37.500 0.00 0.00 37.25 3.49
5481 5534 8.491950 GCTTTTTGGCGAATACATAAAAAGAAA 58.508 29.630 18.97 0.00 44.74 2.52
5488 5541 7.540745 GGCGAATACATAAAAAGAAACATGTGT 59.459 33.333 0.00 0.00 33.78 3.72
5514 5567 4.599041 ACATGGTTATTGCTGCTTCCTTA 58.401 39.130 0.00 0.00 0.00 2.69
5523 5576 2.505407 TGCTGCTTCCTTATGGAGCTTA 59.495 45.455 15.28 0.00 45.71 3.09
5559 5612 2.430332 CAGTTTCTGTTTTCAGGGGCAA 59.570 45.455 0.00 0.00 46.94 4.52
5610 5663 5.649395 TGCAAGACTAAGCTCTTATTTGCAT 59.351 36.000 18.20 0.00 39.26 3.96
5619 5672 5.198965 AGCTCTTATTTGCATCAGTGGAAT 58.801 37.500 0.00 0.00 35.50 3.01
5802 5869 7.892241 TGACCTGGTTCTGTAATAAGTAGTACT 59.108 37.037 0.00 0.00 0.00 2.73
5848 5917 3.006940 GAGAGAACTTCTGCTCTCGAGA 58.993 50.000 15.70 15.70 45.21 4.04
5866 5935 1.604755 AGATTCTAGGCAGCGTAGTCG 59.395 52.381 19.28 0.00 40.37 4.18
5880 5949 3.937874 CGTAGTCGCCTAGAAGTAGTTG 58.062 50.000 0.00 0.00 0.00 3.16
5884 5953 5.211174 AGTCGCCTAGAAGTAGTTGTTTT 57.789 39.130 0.00 0.00 0.00 2.43
5885 5954 6.336842 AGTCGCCTAGAAGTAGTTGTTTTA 57.663 37.500 0.00 0.00 0.00 1.52
5886 5955 6.932947 AGTCGCCTAGAAGTAGTTGTTTTAT 58.067 36.000 0.00 0.00 0.00 1.40
5891 5960 8.718734 CGCCTAGAAGTAGTTGTTTTATTTCTT 58.281 33.333 0.00 0.00 31.89 2.52
6330 6400 3.569849 TGGGAAGGGAACAGCGAA 58.430 55.556 0.00 0.00 0.00 4.70
6331 6401 1.840598 TGGGAAGGGAACAGCGAAA 59.159 52.632 0.00 0.00 0.00 3.46
6332 6402 0.404040 TGGGAAGGGAACAGCGAAAT 59.596 50.000 0.00 0.00 0.00 2.17
6333 6403 0.811281 GGGAAGGGAACAGCGAAATG 59.189 55.000 0.00 0.00 0.00 2.32
6334 6404 0.811281 GGAAGGGAACAGCGAAATGG 59.189 55.000 0.00 0.00 0.00 3.16
6335 6405 0.811281 GAAGGGAACAGCGAAATGGG 59.189 55.000 0.00 0.00 0.00 4.00
6336 6406 0.611896 AAGGGAACAGCGAAATGGGG 60.612 55.000 0.00 0.00 0.00 4.96
6337 6407 1.001393 GGGAACAGCGAAATGGGGA 60.001 57.895 0.00 0.00 0.00 4.81
6338 6408 0.395724 GGGAACAGCGAAATGGGGAT 60.396 55.000 0.00 0.00 0.00 3.85
6339 6409 0.740737 GGAACAGCGAAATGGGGATG 59.259 55.000 0.00 0.00 0.00 3.51
6340 6410 1.681780 GGAACAGCGAAATGGGGATGA 60.682 52.381 0.00 0.00 0.00 2.92
6341 6411 1.672881 GAACAGCGAAATGGGGATGAG 59.327 52.381 0.00 0.00 0.00 2.90
6342 6412 0.107017 ACAGCGAAATGGGGATGAGG 60.107 55.000 0.00 0.00 0.00 3.86
6343 6413 0.181114 CAGCGAAATGGGGATGAGGA 59.819 55.000 0.00 0.00 0.00 3.71
6344 6414 1.143813 AGCGAAATGGGGATGAGGAT 58.856 50.000 0.00 0.00 0.00 3.24
6345 6415 1.496429 AGCGAAATGGGGATGAGGATT 59.504 47.619 0.00 0.00 0.00 3.01
6346 6416 1.610522 GCGAAATGGGGATGAGGATTG 59.389 52.381 0.00 0.00 0.00 2.67
6347 6417 2.936202 CGAAATGGGGATGAGGATTGT 58.064 47.619 0.00 0.00 0.00 2.71
6348 6418 2.620115 CGAAATGGGGATGAGGATTGTG 59.380 50.000 0.00 0.00 0.00 3.33
6349 6419 3.685265 CGAAATGGGGATGAGGATTGTGA 60.685 47.826 0.00 0.00 0.00 3.58
6350 6420 3.589951 AATGGGGATGAGGATTGTGAG 57.410 47.619 0.00 0.00 0.00 3.51
6351 6421 1.971149 TGGGGATGAGGATTGTGAGT 58.029 50.000 0.00 0.00 0.00 3.41
6352 6422 2.278245 TGGGGATGAGGATTGTGAGTT 58.722 47.619 0.00 0.00 0.00 3.01
6353 6423 2.025981 TGGGGATGAGGATTGTGAGTTG 60.026 50.000 0.00 0.00 0.00 3.16
6354 6424 2.239654 GGGGATGAGGATTGTGAGTTGA 59.760 50.000 0.00 0.00 0.00 3.18
6355 6425 3.308402 GGGGATGAGGATTGTGAGTTGAA 60.308 47.826 0.00 0.00 0.00 2.69
6356 6426 4.530875 GGGATGAGGATTGTGAGTTGAAT 58.469 43.478 0.00 0.00 0.00 2.57
6357 6427 4.337555 GGGATGAGGATTGTGAGTTGAATG 59.662 45.833 0.00 0.00 0.00 2.67
6358 6428 4.337555 GGATGAGGATTGTGAGTTGAATGG 59.662 45.833 0.00 0.00 0.00 3.16
6359 6429 4.371624 TGAGGATTGTGAGTTGAATGGT 57.628 40.909 0.00 0.00 0.00 3.55
6360 6430 4.728772 TGAGGATTGTGAGTTGAATGGTT 58.271 39.130 0.00 0.00 0.00 3.67
6361 6431 4.761739 TGAGGATTGTGAGTTGAATGGTTC 59.238 41.667 0.00 0.00 0.00 3.62
6362 6432 3.753272 AGGATTGTGAGTTGAATGGTTCG 59.247 43.478 0.00 0.00 0.00 3.95
6363 6433 3.502211 GGATTGTGAGTTGAATGGTTCGT 59.498 43.478 0.00 0.00 0.00 3.85
6364 6434 4.023193 GGATTGTGAGTTGAATGGTTCGTT 60.023 41.667 0.00 0.00 0.00 3.85
6365 6435 3.961477 TGTGAGTTGAATGGTTCGTTG 57.039 42.857 0.00 0.00 0.00 4.10
6366 6436 3.536570 TGTGAGTTGAATGGTTCGTTGA 58.463 40.909 0.00 0.00 0.00 3.18
6367 6437 4.133820 TGTGAGTTGAATGGTTCGTTGAT 58.866 39.130 0.00 0.00 0.00 2.57
6368 6438 5.301555 TGTGAGTTGAATGGTTCGTTGATA 58.698 37.500 0.00 0.00 0.00 2.15
6369 6439 5.408299 TGTGAGTTGAATGGTTCGTTGATAG 59.592 40.000 0.00 0.00 0.00 2.08
6370 6440 4.391830 TGAGTTGAATGGTTCGTTGATAGC 59.608 41.667 0.00 0.00 0.00 2.97
6371 6441 3.689649 AGTTGAATGGTTCGTTGATAGCC 59.310 43.478 0.00 0.00 0.00 3.93
6372 6442 2.276201 TGAATGGTTCGTTGATAGCCG 58.724 47.619 0.00 0.00 0.00 5.52
6373 6443 2.093921 TGAATGGTTCGTTGATAGCCGA 60.094 45.455 0.00 0.00 0.00 5.54
6374 6444 2.684001 ATGGTTCGTTGATAGCCGAA 57.316 45.000 0.00 0.00 40.45 4.30
6375 6445 2.004583 TGGTTCGTTGATAGCCGAAG 57.995 50.000 0.00 0.00 43.02 3.79
6398 6468 5.493133 GTGCATATAAATGAACCCAACGA 57.507 39.130 0.00 0.00 35.81 3.85
6399 6469 5.510671 GTGCATATAAATGAACCCAACGAG 58.489 41.667 0.00 0.00 35.81 4.18
6400 6470 5.295787 GTGCATATAAATGAACCCAACGAGA 59.704 40.000 0.00 0.00 35.81 4.04
6401 6471 6.017109 GTGCATATAAATGAACCCAACGAGAT 60.017 38.462 0.00 0.00 35.81 2.75
6402 6472 6.204688 TGCATATAAATGAACCCAACGAGATC 59.795 38.462 0.00 0.00 34.84 2.75
6403 6473 6.428159 GCATATAAATGAACCCAACGAGATCT 59.572 38.462 0.00 0.00 34.84 2.75
6404 6474 7.571983 GCATATAAATGAACCCAACGAGATCTG 60.572 40.741 0.00 0.00 34.84 2.90
6405 6475 2.698855 ATGAACCCAACGAGATCTGG 57.301 50.000 0.00 0.00 0.00 3.86
6406 6476 1.639722 TGAACCCAACGAGATCTGGA 58.360 50.000 12.14 0.00 34.35 3.86
6407 6477 2.187958 TGAACCCAACGAGATCTGGAT 58.812 47.619 12.14 0.00 34.35 3.41
6408 6478 2.571653 TGAACCCAACGAGATCTGGATT 59.428 45.455 12.14 0.00 34.35 3.01
6409 6479 2.698855 ACCCAACGAGATCTGGATTG 57.301 50.000 12.14 11.29 34.35 2.67
6410 6480 2.187958 ACCCAACGAGATCTGGATTGA 58.812 47.619 12.14 0.00 34.35 2.57
6411 6481 2.169352 ACCCAACGAGATCTGGATTGAG 59.831 50.000 12.14 6.00 34.35 3.02
6412 6482 2.169352 CCCAACGAGATCTGGATTGAGT 59.831 50.000 12.14 0.00 34.35 3.41
6413 6483 3.369892 CCCAACGAGATCTGGATTGAGTT 60.370 47.826 12.14 0.00 34.35 3.01
6414 6484 3.620374 CCAACGAGATCTGGATTGAGTTG 59.380 47.826 12.14 9.88 37.88 3.16
6415 6485 4.498241 CAACGAGATCTGGATTGAGTTGA 58.502 43.478 12.14 0.00 39.78 3.18
6416 6486 4.116747 ACGAGATCTGGATTGAGTTGAC 57.883 45.455 12.14 0.00 0.00 3.18
6417 6487 3.766591 ACGAGATCTGGATTGAGTTGACT 59.233 43.478 12.14 0.00 0.00 3.41
6418 6488 4.221703 ACGAGATCTGGATTGAGTTGACTT 59.778 41.667 12.14 0.00 0.00 3.01
6419 6489 4.565962 CGAGATCTGGATTGAGTTGACTTG 59.434 45.833 0.00 0.00 0.00 3.16
6420 6490 5.623141 CGAGATCTGGATTGAGTTGACTTGA 60.623 44.000 0.00 0.00 0.00 3.02
6421 6491 5.486526 AGATCTGGATTGAGTTGACTTGAC 58.513 41.667 0.00 0.00 0.00 3.18
6422 6492 4.963318 TCTGGATTGAGTTGACTTGACT 57.037 40.909 0.00 0.00 0.00 3.41
6423 6493 4.887748 TCTGGATTGAGTTGACTTGACTC 58.112 43.478 0.00 0.00 42.98 3.36
6424 6494 4.590647 TCTGGATTGAGTTGACTTGACTCT 59.409 41.667 5.92 0.00 43.07 3.24
6425 6495 4.887748 TGGATTGAGTTGACTTGACTCTC 58.112 43.478 5.92 0.00 43.07 3.20
6426 6496 4.249661 GGATTGAGTTGACTTGACTCTCC 58.750 47.826 5.92 2.29 43.07 3.71
6427 6497 3.753294 TTGAGTTGACTTGACTCTCCC 57.247 47.619 5.92 0.00 43.07 4.30
6428 6498 2.964209 TGAGTTGACTTGACTCTCCCT 58.036 47.619 5.92 0.00 43.07 4.20
6429 6499 2.894126 TGAGTTGACTTGACTCTCCCTC 59.106 50.000 5.92 0.00 43.07 4.30
6430 6500 2.894126 GAGTTGACTTGACTCTCCCTCA 59.106 50.000 0.00 0.00 40.24 3.86
6431 6501 3.309296 AGTTGACTTGACTCTCCCTCAA 58.691 45.455 0.00 0.00 0.00 3.02
6432 6502 3.323403 AGTTGACTTGACTCTCCCTCAAG 59.677 47.826 6.61 6.61 46.88 3.02
6437 6507 4.615588 CTTGACTCTCCCTCAAGTCTTT 57.384 45.455 4.37 0.00 41.97 2.52
6438 6508 4.565022 CTTGACTCTCCCTCAAGTCTTTC 58.435 47.826 4.37 0.00 41.97 2.62
6439 6509 3.850752 TGACTCTCCCTCAAGTCTTTCT 58.149 45.455 4.37 0.00 41.97 2.52
6440 6510 4.227197 TGACTCTCCCTCAAGTCTTTCTT 58.773 43.478 4.37 0.00 41.97 2.52
6441 6511 4.656112 TGACTCTCCCTCAAGTCTTTCTTT 59.344 41.667 4.37 0.00 41.97 2.52
6442 6512 5.221541 TGACTCTCCCTCAAGTCTTTCTTTC 60.222 44.000 4.37 0.00 41.97 2.62
6443 6513 4.656112 ACTCTCCCTCAAGTCTTTCTTTCA 59.344 41.667 0.00 0.00 33.63 2.69
6444 6514 5.131142 ACTCTCCCTCAAGTCTTTCTTTCAA 59.869 40.000 0.00 0.00 33.63 2.69
6445 6515 6.001449 TCTCCCTCAAGTCTTTCTTTCAAA 57.999 37.500 0.00 0.00 33.63 2.69
6446 6516 6.423182 TCTCCCTCAAGTCTTTCTTTCAAAA 58.577 36.000 0.00 0.00 33.63 2.44
6447 6517 6.543831 TCTCCCTCAAGTCTTTCTTTCAAAAG 59.456 38.462 0.00 0.00 37.55 2.27
6448 6518 6.423182 TCCCTCAAGTCTTTCTTTCAAAAGA 58.577 36.000 1.06 1.06 41.70 2.52
6458 6528 3.633418 TCTTTCAAAAGAAAACGGGGGA 58.367 40.909 2.74 0.00 41.75 4.81
6459 6529 4.219919 TCTTTCAAAAGAAAACGGGGGAT 58.780 39.130 2.74 0.00 41.75 3.85
6460 6530 4.279922 TCTTTCAAAAGAAAACGGGGGATC 59.720 41.667 2.74 0.00 41.75 3.36
6461 6531 3.518992 TCAAAAGAAAACGGGGGATCT 57.481 42.857 0.00 0.00 0.00 2.75
6462 6532 4.644163 TCAAAAGAAAACGGGGGATCTA 57.356 40.909 0.00 0.00 0.00 1.98
6463 6533 5.187621 TCAAAAGAAAACGGGGGATCTAT 57.812 39.130 0.00 0.00 0.00 1.98
6464 6534 5.576128 TCAAAAGAAAACGGGGGATCTATT 58.424 37.500 0.00 0.00 0.00 1.73
6465 6535 6.723339 TCAAAAGAAAACGGGGGATCTATTA 58.277 36.000 0.00 0.00 0.00 0.98
6466 6536 6.826741 TCAAAAGAAAACGGGGGATCTATTAG 59.173 38.462 0.00 0.00 0.00 1.73
6467 6537 4.353383 AGAAAACGGGGGATCTATTAGC 57.647 45.455 0.00 0.00 0.00 3.09
6468 6538 2.833631 AAACGGGGGATCTATTAGCG 57.166 50.000 0.00 0.00 0.00 4.26
6469 6539 0.320697 AACGGGGGATCTATTAGCGC 59.679 55.000 0.00 0.00 0.00 5.92
6470 6540 1.153823 CGGGGGATCTATTAGCGCG 60.154 63.158 0.00 0.00 0.00 6.86
6471 6541 1.874345 CGGGGGATCTATTAGCGCGT 61.874 60.000 8.43 0.00 0.00 6.01
6472 6542 1.180029 GGGGGATCTATTAGCGCGTA 58.820 55.000 8.43 0.00 0.00 4.42
6473 6543 1.755380 GGGGGATCTATTAGCGCGTAT 59.245 52.381 8.43 1.61 0.00 3.06
6474 6544 2.481449 GGGGGATCTATTAGCGCGTATG 60.481 54.545 8.43 0.00 0.00 2.39
6475 6545 2.481449 GGGGATCTATTAGCGCGTATGG 60.481 54.545 8.43 1.41 0.00 2.74
6476 6546 2.194271 GGATCTATTAGCGCGTATGGC 58.806 52.381 8.43 0.00 38.69 4.40
6486 6556 2.954868 CGTATGGCGCGTGAGGAC 60.955 66.667 8.43 0.00 0.00 3.85
6487 6557 2.585247 GTATGGCGCGTGAGGACC 60.585 66.667 8.43 0.00 0.00 4.46
6488 6558 2.758327 TATGGCGCGTGAGGACCT 60.758 61.111 8.43 0.00 0.00 3.85
6489 6559 2.782222 TATGGCGCGTGAGGACCTC 61.782 63.158 15.13 15.13 0.00 3.85
6492 6562 4.803426 GCGCGTGAGGACCTCCAG 62.803 72.222 19.11 13.23 38.89 3.86
6493 6563 4.803426 CGCGTGAGGACCTCCAGC 62.803 72.222 19.11 20.65 38.89 4.85
6494 6564 4.803426 GCGTGAGGACCTCCAGCG 62.803 72.222 19.11 19.34 38.89 5.18
6495 6565 3.374402 CGTGAGGACCTCCAGCGT 61.374 66.667 19.11 0.00 38.89 5.07
6496 6566 2.262915 GTGAGGACCTCCAGCGTG 59.737 66.667 19.11 0.00 38.89 5.34
6497 6567 2.117423 TGAGGACCTCCAGCGTGA 59.883 61.111 19.11 0.00 38.89 4.35
6498 6568 2.276116 TGAGGACCTCCAGCGTGAC 61.276 63.158 19.11 0.00 38.89 3.67
6499 6569 2.997897 AGGACCTCCAGCGTGACC 60.998 66.667 0.00 0.00 38.89 4.02
6500 6570 2.997897 GGACCTCCAGCGTGACCT 60.998 66.667 0.00 0.00 35.64 3.85
6501 6571 2.584391 GGACCTCCAGCGTGACCTT 61.584 63.158 0.00 0.00 35.64 3.50
6502 6572 1.374758 GACCTCCAGCGTGACCTTG 60.375 63.158 0.00 0.00 0.00 3.61
6503 6573 2.743928 CCTCCAGCGTGACCTTGC 60.744 66.667 0.00 0.00 0.00 4.01
6504 6574 2.743928 CTCCAGCGTGACCTTGCC 60.744 66.667 0.00 0.00 0.00 4.52
6505 6575 3.241530 TCCAGCGTGACCTTGCCT 61.242 61.111 0.00 0.00 0.00 4.75
6506 6576 2.743928 CCAGCGTGACCTTGCCTC 60.744 66.667 0.00 0.00 0.00 4.70
6507 6577 3.114616 CAGCGTGACCTTGCCTCG 61.115 66.667 0.00 0.00 0.00 4.63
6508 6578 4.379243 AGCGTGACCTTGCCTCGG 62.379 66.667 0.00 0.00 0.00 4.63
6511 6581 4.021925 GTGACCTTGCCTCGGCCT 62.022 66.667 0.00 0.00 41.09 5.19
6512 6582 3.706373 TGACCTTGCCTCGGCCTC 61.706 66.667 0.00 0.00 41.09 4.70
6513 6583 3.394836 GACCTTGCCTCGGCCTCT 61.395 66.667 0.00 0.00 41.09 3.69
6514 6584 3.672295 GACCTTGCCTCGGCCTCTG 62.672 68.421 0.00 0.00 41.09 3.35
6515 6585 4.479993 CCTTGCCTCGGCCTCTGG 62.480 72.222 0.00 0.55 41.09 3.86
6516 6586 3.710722 CTTGCCTCGGCCTCTGGT 61.711 66.667 0.00 0.00 41.09 4.00
6517 6587 3.672295 CTTGCCTCGGCCTCTGGTC 62.672 68.421 0.00 0.00 41.09 4.02
6518 6588 4.704103 TGCCTCGGCCTCTGGTCT 62.704 66.667 0.00 0.00 41.09 3.85
6519 6589 4.154347 GCCTCGGCCTCTGGTCTG 62.154 72.222 0.00 0.00 34.56 3.51
6520 6590 3.465403 CCTCGGCCTCTGGTCTGG 61.465 72.222 0.00 0.00 0.00 3.86
6521 6591 3.465403 CTCGGCCTCTGGTCTGGG 61.465 72.222 0.00 0.00 0.00 4.45
6522 6592 4.316823 TCGGCCTCTGGTCTGGGT 62.317 66.667 0.00 0.00 0.00 4.51
6523 6593 3.775654 CGGCCTCTGGTCTGGGTC 61.776 72.222 0.00 0.00 0.00 4.46
6524 6594 2.284995 GGCCTCTGGTCTGGGTCT 60.285 66.667 0.00 0.00 0.00 3.85
6525 6595 2.664081 GGCCTCTGGTCTGGGTCTG 61.664 68.421 0.00 0.00 0.00 3.51
6526 6596 2.664081 GCCTCTGGTCTGGGTCTGG 61.664 68.421 0.00 0.00 0.00 3.86
6527 6597 1.992277 CCTCTGGTCTGGGTCTGGG 60.992 68.421 0.00 0.00 0.00 4.45
6528 6598 1.992277 CTCTGGTCTGGGTCTGGGG 60.992 68.421 0.00 0.00 0.00 4.96
6529 6599 2.203998 CTGGTCTGGGTCTGGGGT 60.204 66.667 0.00 0.00 0.00 4.95
6530 6600 2.203938 TGGTCTGGGTCTGGGGTC 60.204 66.667 0.00 0.00 0.00 4.46
6531 6601 2.203938 GGTCTGGGTCTGGGGTCA 60.204 66.667 0.00 0.00 0.00 4.02
6532 6602 2.294078 GGTCTGGGTCTGGGGTCAG 61.294 68.421 0.00 0.00 42.21 3.51
6533 6603 1.229209 GTCTGGGTCTGGGGTCAGA 60.229 63.158 0.00 0.00 46.81 3.27
6546 6616 2.100410 TCAGATCTGACGACGCGC 59.900 61.111 21.67 0.00 34.14 6.86
6547 6617 2.101185 CAGATCTGACGACGCGCT 59.899 61.111 18.34 0.00 0.00 5.92
6548 6618 2.101185 AGATCTGACGACGCGCTG 59.899 61.111 5.73 0.00 0.00 5.18
6549 6619 2.951745 GATCTGACGACGCGCTGG 60.952 66.667 5.73 0.00 0.00 4.85
6550 6620 3.396911 GATCTGACGACGCGCTGGA 62.397 63.158 5.73 0.00 0.00 3.86
6551 6621 3.685214 ATCTGACGACGCGCTGGAC 62.685 63.158 5.73 0.00 0.00 4.02
6570 6640 2.333225 CGGAGCGCGCTAGATTCT 59.667 61.111 36.69 10.80 0.00 2.40
6571 6641 1.299468 CGGAGCGCGCTAGATTCTT 60.299 57.895 36.69 9.84 0.00 2.52
6572 6642 0.872021 CGGAGCGCGCTAGATTCTTT 60.872 55.000 36.69 8.91 0.00 2.52
6573 6643 1.291132 GGAGCGCGCTAGATTCTTTT 58.709 50.000 36.69 7.97 0.00 2.27
6574 6644 2.470821 GGAGCGCGCTAGATTCTTTTA 58.529 47.619 36.69 0.00 0.00 1.52
6575 6645 3.060602 GGAGCGCGCTAGATTCTTTTAT 58.939 45.455 36.69 7.04 0.00 1.40
6576 6646 3.495001 GGAGCGCGCTAGATTCTTTTATT 59.505 43.478 36.69 6.49 0.00 1.40
6577 6647 4.024809 GGAGCGCGCTAGATTCTTTTATTT 60.025 41.667 36.69 5.66 0.00 1.40
6578 6648 5.084385 AGCGCGCTAGATTCTTTTATTTC 57.916 39.130 35.79 0.00 0.00 2.17
6579 6649 4.811557 AGCGCGCTAGATTCTTTTATTTCT 59.188 37.500 35.79 0.18 0.00 2.52
6580 6650 5.294552 AGCGCGCTAGATTCTTTTATTTCTT 59.705 36.000 35.79 0.00 0.00 2.52
6581 6651 5.965918 GCGCGCTAGATTCTTTTATTTCTTT 59.034 36.000 26.67 0.00 0.00 2.52
6582 6652 6.469275 GCGCGCTAGATTCTTTTATTTCTTTT 59.531 34.615 26.67 0.00 0.00 2.27
6583 6653 7.008357 GCGCGCTAGATTCTTTTATTTCTTTTT 59.992 33.333 26.67 0.00 0.00 1.94
6584 6654 8.306923 CGCGCTAGATTCTTTTATTTCTTTTTG 58.693 33.333 5.56 0.00 0.00 2.44
6585 6655 9.341899 GCGCTAGATTCTTTTATTTCTTTTTGA 57.658 29.630 0.00 0.00 0.00 2.69
6592 6662 7.623268 TCTTTTATTTCTTTTTGAGCTTCGC 57.377 32.000 0.00 0.00 0.00 4.70
6593 6663 7.199766 TCTTTTATTTCTTTTTGAGCTTCGCA 58.800 30.769 0.00 0.00 0.00 5.10
6594 6664 6.991485 TTTATTTCTTTTTGAGCTTCGCAG 57.009 33.333 0.00 0.00 0.00 5.18
6611 6681 2.560861 GCGCGTGGCTCAAATGAA 59.439 55.556 8.43 0.00 39.11 2.57
6612 6682 1.081509 GCGCGTGGCTCAAATGAAA 60.082 52.632 8.43 0.00 39.11 2.69
6613 6683 0.662970 GCGCGTGGCTCAAATGAAAA 60.663 50.000 8.43 0.00 39.11 2.29
6614 6684 1.052287 CGCGTGGCTCAAATGAAAAC 58.948 50.000 0.00 0.00 0.00 2.43
6615 6685 1.052287 GCGTGGCTCAAATGAAAACG 58.948 50.000 7.45 7.45 0.00 3.60
6616 6686 1.052287 CGTGGCTCAAATGAAAACGC 58.948 50.000 0.00 0.00 0.00 4.84
6617 6687 1.599171 CGTGGCTCAAATGAAAACGCA 60.599 47.619 0.00 0.00 0.00 5.24
6618 6688 2.468831 GTGGCTCAAATGAAAACGCAA 58.531 42.857 0.00 0.00 0.00 4.85
6619 6689 2.863137 GTGGCTCAAATGAAAACGCAAA 59.137 40.909 0.00 0.00 0.00 3.68
6620 6690 3.308323 GTGGCTCAAATGAAAACGCAAAA 59.692 39.130 0.00 0.00 0.00 2.44
6621 6691 4.024977 GTGGCTCAAATGAAAACGCAAAAT 60.025 37.500 0.00 0.00 0.00 1.82
6622 6692 4.574013 TGGCTCAAATGAAAACGCAAAATT 59.426 33.333 0.00 0.00 0.00 1.82
6623 6693 5.065731 TGGCTCAAATGAAAACGCAAAATTT 59.934 32.000 0.00 0.00 0.00 1.82
6624 6694 6.258727 TGGCTCAAATGAAAACGCAAAATTTA 59.741 30.769 0.00 0.00 0.00 1.40
6625 6695 6.791775 GGCTCAAATGAAAACGCAAAATTTAG 59.208 34.615 0.00 0.00 0.00 1.85
6626 6696 6.791775 GCTCAAATGAAAACGCAAAATTTAGG 59.208 34.615 0.00 0.00 0.00 2.69
6627 6697 6.654122 TCAAATGAAAACGCAAAATTTAGGC 58.346 32.000 5.01 5.01 0.00 3.93
6641 6711 9.848172 GCAAAATTTAGGCGATATACAAAAATG 57.152 29.630 0.00 0.00 0.00 2.32
6647 6717 8.958119 TTAGGCGATATACAAAAATGAAGTCT 57.042 30.769 0.00 0.00 0.00 3.24
6648 6718 7.865706 AGGCGATATACAAAAATGAAGTCTT 57.134 32.000 0.00 0.00 0.00 3.01
6649 6719 7.920738 AGGCGATATACAAAAATGAAGTCTTC 58.079 34.615 5.58 5.58 0.00 2.87
6650 6720 6.846283 GGCGATATACAAAAATGAAGTCTTCG 59.154 38.462 8.06 0.00 0.00 3.79
6651 6721 7.399523 GCGATATACAAAAATGAAGTCTTCGT 58.600 34.615 8.06 4.76 0.00 3.85
6652 6722 8.537223 GCGATATACAAAAATGAAGTCTTCGTA 58.463 33.333 7.74 3.46 0.00 3.43
6653 6723 9.831054 CGATATACAAAAATGAAGTCTTCGTAC 57.169 33.333 7.74 0.00 0.00 3.67
6655 6725 9.886132 ATATACAAAAATGAAGTCTTCGTACCT 57.114 29.630 7.74 0.00 0.00 3.08
6657 6727 7.653767 ACAAAAATGAAGTCTTCGTACCTAG 57.346 36.000 7.74 1.31 0.00 3.02
6658 6728 6.649557 ACAAAAATGAAGTCTTCGTACCTAGG 59.350 38.462 7.41 7.41 0.00 3.02
6659 6729 5.997384 AAATGAAGTCTTCGTACCTAGGT 57.003 39.130 20.57 20.57 0.00 3.08
6660 6730 5.579564 AATGAAGTCTTCGTACCTAGGTC 57.420 43.478 20.32 9.44 0.00 3.85
6661 6731 4.025040 TGAAGTCTTCGTACCTAGGTCA 57.975 45.455 20.32 2.79 0.00 4.02
6662 6732 3.755378 TGAAGTCTTCGTACCTAGGTCAC 59.245 47.826 20.32 13.77 0.00 3.67
6663 6733 3.717452 AGTCTTCGTACCTAGGTCACT 57.283 47.619 20.32 8.99 0.00 3.41
6664 6734 3.345414 AGTCTTCGTACCTAGGTCACTG 58.655 50.000 20.32 6.98 0.00 3.66
6665 6735 2.089980 TCTTCGTACCTAGGTCACTGC 58.910 52.381 20.32 4.09 0.00 4.40
6666 6736 2.093106 CTTCGTACCTAGGTCACTGCT 58.907 52.381 20.32 0.00 0.00 4.24
6667 6737 3.054875 TCTTCGTACCTAGGTCACTGCTA 60.055 47.826 20.32 0.00 0.00 3.49
6668 6738 2.636830 TCGTACCTAGGTCACTGCTAC 58.363 52.381 20.32 8.24 0.00 3.58
6669 6739 1.674962 CGTACCTAGGTCACTGCTACC 59.325 57.143 20.32 0.00 37.27 3.18
6671 6741 2.146920 ACCTAGGTCACTGCTACCTC 57.853 55.000 9.21 0.00 44.20 3.85
6672 6742 1.641714 ACCTAGGTCACTGCTACCTCT 59.358 52.381 9.21 0.00 44.20 3.69
6673 6743 2.028130 CCTAGGTCACTGCTACCTCTG 58.972 57.143 0.00 1.36 44.20 3.35
6674 6744 2.621929 CCTAGGTCACTGCTACCTCTGT 60.622 54.545 0.00 0.00 44.20 3.41
6675 6745 2.901338 AGGTCACTGCTACCTCTGTA 57.099 50.000 0.00 0.00 44.20 2.74
6676 6746 2.448453 AGGTCACTGCTACCTCTGTAC 58.552 52.381 0.00 0.00 44.20 2.90
6677 6747 1.477295 GGTCACTGCTACCTCTGTACC 59.523 57.143 0.00 0.00 33.97 3.34
6678 6748 2.168496 GTCACTGCTACCTCTGTACCA 58.832 52.381 0.00 0.00 0.00 3.25
6679 6749 2.561419 GTCACTGCTACCTCTGTACCAA 59.439 50.000 0.00 0.00 0.00 3.67
6680 6750 3.006537 GTCACTGCTACCTCTGTACCAAA 59.993 47.826 0.00 0.00 0.00 3.28
6681 6751 3.838317 TCACTGCTACCTCTGTACCAAAT 59.162 43.478 0.00 0.00 0.00 2.32
6682 6752 4.286032 TCACTGCTACCTCTGTACCAAATT 59.714 41.667 0.00 0.00 0.00 1.82
6683 6753 5.482526 TCACTGCTACCTCTGTACCAAATTA 59.517 40.000 0.00 0.00 0.00 1.40
6684 6754 6.014070 TCACTGCTACCTCTGTACCAAATTAA 60.014 38.462 0.00 0.00 0.00 1.40
6685 6755 6.092259 CACTGCTACCTCTGTACCAAATTAAC 59.908 42.308 0.00 0.00 0.00 2.01
6686 6756 6.013639 ACTGCTACCTCTGTACCAAATTAACT 60.014 38.462 0.00 0.00 0.00 2.24
6687 6757 6.170506 TGCTACCTCTGTACCAAATTAACTG 58.829 40.000 0.00 0.00 0.00 3.16
6688 6758 5.064834 GCTACCTCTGTACCAAATTAACTGC 59.935 44.000 0.00 0.00 0.00 4.40
6689 6759 4.980573 ACCTCTGTACCAAATTAACTGCA 58.019 39.130 0.00 0.00 0.00 4.41
6690 6760 5.381757 ACCTCTGTACCAAATTAACTGCAA 58.618 37.500 0.00 0.00 0.00 4.08
6691 6761 5.830991 ACCTCTGTACCAAATTAACTGCAAA 59.169 36.000 0.00 0.00 0.00 3.68
6692 6762 6.322712 ACCTCTGTACCAAATTAACTGCAAAA 59.677 34.615 0.00 0.00 0.00 2.44
6693 6763 7.147811 ACCTCTGTACCAAATTAACTGCAAAAA 60.148 33.333 0.00 0.00 0.00 1.94
6694 6764 7.169140 CCTCTGTACCAAATTAACTGCAAAAAC 59.831 37.037 0.00 0.00 0.00 2.43
6695 6765 6.693545 TCTGTACCAAATTAACTGCAAAAACG 59.306 34.615 0.00 0.00 0.00 3.60
6696 6766 6.331061 TGTACCAAATTAACTGCAAAAACGT 58.669 32.000 0.00 0.00 0.00 3.99
6697 6767 5.959652 ACCAAATTAACTGCAAAAACGTC 57.040 34.783 0.00 0.00 0.00 4.34
6698 6768 5.656480 ACCAAATTAACTGCAAAAACGTCT 58.344 33.333 0.00 0.00 0.00 4.18
6699 6769 6.103330 ACCAAATTAACTGCAAAAACGTCTT 58.897 32.000 0.00 0.00 0.00 3.01
6700 6770 7.259161 ACCAAATTAACTGCAAAAACGTCTTA 58.741 30.769 0.00 0.00 0.00 2.10
6701 6771 7.923878 ACCAAATTAACTGCAAAAACGTCTTAT 59.076 29.630 0.00 0.00 0.00 1.73
6702 6772 9.400638 CCAAATTAACTGCAAAAACGTCTTATA 57.599 29.630 0.00 0.00 0.00 0.98
6708 6778 8.865590 AACTGCAAAAACGTCTTATATTTTGT 57.134 26.923 17.48 1.51 42.09 2.83
6709 6779 8.865590 ACTGCAAAAACGTCTTATATTTTGTT 57.134 26.923 17.48 5.08 42.09 2.83
6710 6780 9.953697 ACTGCAAAAACGTCTTATATTTTGTTA 57.046 25.926 17.48 9.60 42.09 2.41
6712 6782 9.731819 TGCAAAAACGTCTTATATTTTGTTACA 57.268 25.926 17.48 8.33 42.09 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.528072 GCTTCTCGGTGGAAATTTTAAAGATG 59.472 38.462 0.00 0.00 0.00 2.90
31 32 6.149474 CACCTCAACAAACGATCTAGGAAAAT 59.851 38.462 0.00 0.00 0.00 1.82
100 101 4.954118 TCCCTGGCAGTGGACGGT 62.954 66.667 17.48 0.00 0.00 4.83
109 110 3.068881 CCGACTTCTTCCCTGGCA 58.931 61.111 0.00 0.00 0.00 4.92
123 124 3.546543 CCCATCCTAAGGCGCCGA 61.547 66.667 23.20 13.05 0.00 5.54
125 126 0.819666 CTTTCCCATCCTAAGGCGCC 60.820 60.000 21.89 21.89 0.00 6.53
175 176 1.077140 TTGACAGCACTTGCCACCA 60.077 52.632 0.00 0.00 43.38 4.17
222 244 3.781307 CTGTTGGATCCCCCGCGA 61.781 66.667 8.23 0.00 37.93 5.87
246 268 1.364171 GGACTGTCGCATCGGCTAT 59.636 57.895 1.07 0.00 38.10 2.97
273 295 2.350863 ACAACAGGAGGAGGAGGAAT 57.649 50.000 0.00 0.00 0.00 3.01
274 296 2.118403 AACAACAGGAGGAGGAGGAA 57.882 50.000 0.00 0.00 0.00 3.36
275 297 3.491766 ATAACAACAGGAGGAGGAGGA 57.508 47.619 0.00 0.00 0.00 3.71
292 314 4.473196 TGGGATCCAGTGCTTGAACTATAA 59.527 41.667 15.23 0.00 0.00 0.98
295 317 2.237143 CTGGGATCCAGTGCTTGAACTA 59.763 50.000 15.23 0.00 45.82 2.24
314 336 4.511527 AGCAGATCATGTCTTTGTACCTG 58.488 43.478 0.00 0.00 34.00 4.00
323 345 5.814705 GCTACAGTTAAAGCAGATCATGTCT 59.185 40.000 0.00 0.00 38.63 3.41
331 353 2.615493 GGCCAGCTACAGTTAAAGCAGA 60.615 50.000 0.00 0.00 41.32 4.26
359 381 3.355378 CTCAATGCAGTTCCCCACATAA 58.645 45.455 0.00 0.00 0.00 1.90
461 483 3.927142 CAGCTGCTACACTACCAAAGTAC 59.073 47.826 0.00 0.00 35.76 2.73
488 510 5.838521 AGGAACATCAATGTGGTAAAAACCT 59.161 36.000 0.00 0.00 41.61 3.50
527 550 4.212214 CAGTTCTTGTAGTTGAGCCAGTTC 59.788 45.833 0.00 0.00 0.00 3.01
529 552 3.134804 ACAGTTCTTGTAGTTGAGCCAGT 59.865 43.478 0.00 0.00 38.56 4.00
564 587 3.319122 GCAGAAACTTCACCCTTCACAAT 59.681 43.478 0.00 0.00 0.00 2.71
569 592 2.155279 GAGGCAGAAACTTCACCCTTC 58.845 52.381 3.39 0.00 32.41 3.46
578 601 3.898123 TCAGTAACTCTGAGGCAGAAACT 59.102 43.478 9.85 0.61 46.77 2.66
633 657 2.827921 CCTAATATGCCAAGGCCATTCC 59.172 50.000 5.01 0.00 41.09 3.01
648 672 5.483174 TCTTCTCTCCCAAGTCCCTAATA 57.517 43.478 0.00 0.00 0.00 0.98
765 789 2.632028 CAACATCCCAACCCATTCACAA 59.368 45.455 0.00 0.00 0.00 3.33
854 878 4.460263 TGTAATCTGTGCAAACACCTTCT 58.540 39.130 0.00 0.00 46.86 2.85
867 891 5.499004 TCCCTAAGCAAGTTGTAATCTGT 57.501 39.130 4.48 0.00 0.00 3.41
885 909 3.041946 GTCTACATCAACCAGGATCCCT 58.958 50.000 8.55 0.00 0.00 4.20
897 921 8.491045 TGAATATACCATTCCAGTCTACATCA 57.509 34.615 0.00 0.00 0.00 3.07
903 927 7.682787 ACTCTTGAATATACCATTCCAGTCT 57.317 36.000 0.00 0.00 0.00 3.24
978 1002 4.367039 TTCCACTAACCTCTCAAAAGGG 57.633 45.455 0.00 0.00 41.04 3.95
1097 1121 8.478877 TGTTATCTTCTTCCTCTTTCTCCATAC 58.521 37.037 0.00 0.00 0.00 2.39
1135 1163 7.106239 TCTTTCTGAGTTTTATCCTTGCTAGG 58.894 38.462 8.03 8.03 43.46 3.02
1155 1183 2.041755 AGGTTCCCCCATGTCTTCTTTC 59.958 50.000 0.00 0.00 34.66 2.62
1156 1184 2.073776 AGGTTCCCCCATGTCTTCTTT 58.926 47.619 0.00 0.00 34.66 2.52
1225 1253 3.492102 TTTTGGCTGACTAGAGCTTGT 57.508 42.857 0.00 0.00 39.11 3.16
1329 1357 3.560882 CCCTCTTCTCAGGAGTTTTGCAT 60.561 47.826 0.00 0.00 35.20 3.96
1330 1358 2.224621 CCCTCTTCTCAGGAGTTTTGCA 60.225 50.000 0.00 0.00 35.20 4.08
1349 1377 2.568623 TTCACTTTCTGCCTCTTCCC 57.431 50.000 0.00 0.00 0.00 3.97
1364 1392 6.256975 GGTTTTTGTAGGTGTGGATTTTTCAC 59.743 38.462 0.00 0.00 35.82 3.18
1377 1405 6.192044 TCCAGAAGAAAAGGTTTTTGTAGGT 58.808 36.000 0.00 0.00 0.00 3.08
1381 1410 6.850752 TCTTCCAGAAGAAAAGGTTTTTGT 57.149 33.333 7.64 0.00 43.79 2.83
1557 1586 3.868077 CGCTCTCCAGAATTTCCAGTAAG 59.132 47.826 0.00 0.00 0.00 2.34
1558 1587 3.260884 ACGCTCTCCAGAATTTCCAGTAA 59.739 43.478 0.00 0.00 0.00 2.24
1568 1597 0.173481 CGATTCCACGCTCTCCAGAA 59.827 55.000 0.00 0.00 0.00 3.02
1578 1607 0.389817 TCTTCTGCACCGATTCCACG 60.390 55.000 0.00 0.00 0.00 4.94
1633 1662 3.502191 TGGTTTGTTTGTGAGAACTGC 57.498 42.857 0.00 0.00 0.00 4.40
1679 1708 1.404391 CAGCTGCTTTGTCCATGATCC 59.596 52.381 0.00 0.00 0.00 3.36
1705 1734 7.392953 AGGAATTTCCAGATTCTTCTTCTTCAC 59.607 37.037 17.57 0.00 39.61 3.18
1712 1741 7.625682 AGGTAGTAGGAATTTCCAGATTCTTCT 59.374 37.037 17.57 2.07 39.61 2.85
1757 1786 4.349636 TCAGAACATCAGGGTTAAGGACAA 59.650 41.667 0.00 0.00 0.00 3.18
1765 1794 6.431234 GTGTTAGAAATCAGAACATCAGGGTT 59.569 38.462 4.79 0.00 35.65 4.11
1872 1901 0.386731 CCGCAAACTTAAGGCAACGG 60.387 55.000 7.53 10.66 46.39 4.44
1915 1944 9.103861 CCCTATTTCTAAGTCAAGATTCTCAAC 57.896 37.037 0.00 0.00 0.00 3.18
1916 1945 8.267894 CCCCTATTTCTAAGTCAAGATTCTCAA 58.732 37.037 0.00 0.00 0.00 3.02
1953 1982 7.156000 TGTGAAGGTCGTTGTTATTAGATTCA 58.844 34.615 0.00 0.00 0.00 2.57
1968 1997 3.270027 TGAGCCATTAATGTGAAGGTCG 58.730 45.455 14.25 0.00 0.00 4.79
2063 2093 6.134055 AGGCCCCTATCATTTAACCTTAAAC 58.866 40.000 0.00 0.00 35.65 2.01
2205 2237 6.939730 TCCAGAAATGTATCTAAGCACACAAA 59.060 34.615 0.00 0.00 0.00 2.83
2221 2253 4.702131 ACGAAATCCTCCTTTCCAGAAATG 59.298 41.667 0.00 0.00 32.60 2.32
2230 2262 2.593026 TGCCAAACGAAATCCTCCTTT 58.407 42.857 0.00 0.00 0.00 3.11
2389 2421 5.934625 AGAAGTGCCATAAACAGTCACTAAG 59.065 40.000 0.00 0.00 37.04 2.18
2396 2428 6.714810 TCATTGTAAGAAGTGCCATAAACAGT 59.285 34.615 0.00 0.00 0.00 3.55
2482 2514 0.704076 TGAAATCCCCTCCCACCAAG 59.296 55.000 0.00 0.00 0.00 3.61
2594 2626 2.370281 TTGTCGCTCTTGATCTCCAC 57.630 50.000 0.00 0.00 0.00 4.02
2678 2711 1.664873 GTATCCCAAGAACCCGAAGC 58.335 55.000 0.00 0.00 0.00 3.86
2679 2712 1.557832 TGGTATCCCAAGAACCCGAAG 59.442 52.381 0.00 0.00 37.98 3.79
2756 2792 2.432444 CACACCCGTGTCAATAACCAT 58.568 47.619 0.00 0.00 42.83 3.55
2759 2795 1.196808 CTGCACACCCGTGTCAATAAC 59.803 52.381 0.00 0.00 45.50 1.89
2770 2806 1.002502 GGTAACCCTCTGCACACCC 60.003 63.158 0.00 0.00 0.00 4.61
2805 2841 1.676006 CAAGCCACCACTTTTCGAACT 59.324 47.619 0.00 0.00 0.00 3.01
2809 2845 0.310854 GGTCAAGCCACCACTTTTCG 59.689 55.000 0.00 0.00 36.32 3.46
2857 2893 0.963856 GGACGGGGGTGTTCCAAATC 60.964 60.000 0.00 0.00 37.22 2.17
2939 2975 3.868077 GCCTCTATATTAATGCTCCAGCG 59.132 47.826 0.00 0.00 45.83 5.18
3035 3072 7.055667 TCCTATGTCTATCCACTTCATTGAC 57.944 40.000 0.00 0.00 0.00 3.18
3043 3080 5.970289 TCTTCCATCCTATGTCTATCCACT 58.030 41.667 0.00 0.00 0.00 4.00
3124 3161 6.621316 TCTACAATCTTACGATCTCTGGAC 57.379 41.667 0.00 0.00 0.00 4.02
3145 3182 2.105477 AGCACTGTTCTTGTCACCATCT 59.895 45.455 0.00 0.00 0.00 2.90
3162 3199 4.723248 AGCTAGCGTTTGAAAATAAGCAC 58.277 39.130 9.55 0.00 0.00 4.40
3253 3290 1.929836 GTAGCAACTTCCAGCATCTCG 59.070 52.381 0.00 0.00 0.00 4.04
3307 3349 4.009675 GTCCAAGATGCACATGAGGTTTA 58.990 43.478 0.00 0.00 0.00 2.01
3328 3370 1.076438 CCTCCTCCCAAAAGGAAGGT 58.924 55.000 0.00 0.00 46.94 3.50
3365 3407 4.991687 ACTTTGGAGACGTTCATTCTCTTC 59.008 41.667 0.00 0.00 39.67 2.87
3396 3441 3.041946 GCCTCCTTAATCTCCTCCTCAA 58.958 50.000 0.00 0.00 0.00 3.02
3421 3466 3.385433 CACCATGTGCATATGACCCAAAT 59.615 43.478 23.52 0.00 0.00 2.32
3489 3534 9.236691 CCATAAAATCAGTTTTGATAACATCCG 57.763 33.333 0.00 0.00 43.20 4.18
3600 3645 2.723124 TTTCTTCAAATCCTTGGCGC 57.277 45.000 0.00 0.00 33.01 6.53
3715 3760 7.173722 TCCCCTTAATAAACGATGTTTGGTTA 58.826 34.615 5.24 2.64 0.00 2.85
3748 3793 4.213270 CGAGCCATGACAACACTTTCTAAA 59.787 41.667 0.00 0.00 0.00 1.85
3771 3816 7.672983 TTCTTTACCTCATGAATCACTTCAC 57.327 36.000 0.00 0.00 43.92 3.18
3790 3835 2.108952 ACCCTGAGCACCAGATTTCTTT 59.891 45.455 7.59 0.00 45.78 2.52
3803 3848 3.055747 AGTTTAAGCACTAGACCCTGAGC 60.056 47.826 0.00 0.00 0.00 4.26
3847 3892 1.580059 AGAAATCCCAGCTAACCCGA 58.420 50.000 0.00 0.00 0.00 5.14
3855 3900 6.343703 AGCATTTCAAATAAGAAATCCCAGC 58.656 36.000 0.00 0.00 44.16 4.85
3897 3943 3.362040 CAAGCAATCCACTTGGGGA 57.638 52.632 0.00 0.00 40.68 4.81
4012 4058 2.863988 AACAAGGGGGAGTGGGGG 60.864 66.667 0.00 0.00 0.00 5.40
4085 4131 2.037641 GCAGAAGCCCAAAAATCAGGTT 59.962 45.455 0.00 0.00 33.58 3.50
4123 4169 3.192844 CGTATTGTAGACTCACCACACCT 59.807 47.826 0.00 0.00 0.00 4.00
4164 4210 4.428294 TTATGAGCTGAATTCTCCAGGG 57.572 45.455 7.05 0.00 32.51 4.45
4558 4604 3.070015 CCCAAAAGAAGTGAGCCATTTGT 59.930 43.478 0.00 0.00 0.00 2.83
4594 4640 8.892723 CAATTAGCTAAATGGTATCTGTGTTGA 58.107 33.333 10.85 0.00 0.00 3.18
4602 4648 5.641155 ACCCCCAATTAGCTAAATGGTATC 58.359 41.667 30.10 0.00 0.00 2.24
4610 4656 4.083565 GTGACAAACCCCCAATTAGCTAA 58.916 43.478 8.99 8.99 0.00 3.09
4620 4666 0.037734 CCACCTAGTGACAAACCCCC 59.962 60.000 0.00 0.00 35.23 5.40
4630 4677 5.104527 TCCACCATATTCTTTCCACCTAGTG 60.105 44.000 0.00 0.00 0.00 2.74
4637 4684 4.545678 CCCAATCCACCATATTCTTTCCA 58.454 43.478 0.00 0.00 0.00 3.53
4651 4698 6.795192 TTGATATTAGGAATCCCCAATCCA 57.205 37.500 0.00 0.00 38.23 3.41
4701 4748 4.447138 TCAAAGAACCTTTTGCCCTAGA 57.553 40.909 0.00 0.00 37.83 2.43
4704 4751 3.575805 TCATCAAAGAACCTTTTGCCCT 58.424 40.909 0.00 0.00 37.83 5.19
4771 4820 4.772624 GCCCAAAGAAGGTTAGGAGAATTT 59.227 41.667 0.00 0.00 0.00 1.82
4786 4835 2.158325 ACCATCTCCTTTTGCCCAAAGA 60.158 45.455 6.99 0.00 44.40 2.52
4945 4994 8.444783 TGGTTGCAAATACTATATAAGTCCCAT 58.555 33.333 0.00 0.00 39.80 4.00
4958 5007 4.038642 ACATTCCGTTTGGTTGCAAATACT 59.961 37.500 0.00 0.00 36.30 2.12
5005 5055 9.036980 TCTCCTAAAGATAGCTTAAGTTCTTGT 57.963 33.333 14.25 9.46 32.98 3.16
5018 5068 7.825331 TGGTCTACACATCTCCTAAAGATAG 57.175 40.000 0.00 0.00 43.13 2.08
5117 5168 1.518367 AGGTTCCAAGGACCAGTTCA 58.482 50.000 0.00 0.00 0.00 3.18
5121 5172 2.576191 TCCATTAGGTTCCAAGGACCAG 59.424 50.000 0.00 0.00 35.89 4.00
5171 5222 3.525199 AGCTATCCCTCCAAAGTTGATGT 59.475 43.478 0.00 0.00 0.00 3.06
5224 5275 5.376854 ACATGTATCTTGTGAAGGCAAAC 57.623 39.130 0.00 0.00 0.00 2.93
5226 5277 7.112122 AGAATACATGTATCTTGTGAAGGCAA 58.888 34.615 18.52 0.00 0.00 4.52
5231 5282 7.882791 ACCACAAGAATACATGTATCTTGTGAA 59.117 33.333 41.97 19.87 46.82 3.18
5235 5286 7.964559 CACAACCACAAGAATACATGTATCTTG 59.035 37.037 30.97 30.97 37.09 3.02
5362 5414 4.512944 AGCAACTACACAGTCAAACATCAG 59.487 41.667 0.00 0.00 32.29 2.90
5386 5438 2.978156 ACAAATCCCCACACATGTCT 57.022 45.000 0.00 0.00 0.00 3.41
5419 5471 9.265901 GTCAAAGCTAGCAATTCTATCAATCTA 57.734 33.333 18.83 0.00 0.00 1.98
5488 5541 5.480073 AGGAAGCAGCAATAACCATGTTAAA 59.520 36.000 0.00 0.00 0.00 1.52
5514 5567 6.156949 TGTTTCTTAGTCTCCATAAGCTCCAT 59.843 38.462 0.00 0.00 31.57 3.41
5559 5612 3.380004 TGCAGTTCACGTTTCTCCATTTT 59.620 39.130 0.00 0.00 0.00 1.82
5600 5653 7.274904 CAGAAACATTCCACTGATGCAAATAAG 59.725 37.037 0.00 0.00 32.90 1.73
5610 5663 2.143122 GTCGCAGAAACATTCCACTGA 58.857 47.619 0.00 0.00 39.69 3.41
5619 5672 0.319469 TGAGCATCGTCGCAGAAACA 60.319 50.000 1.90 0.00 39.69 2.83
5644 5698 1.202348 GGATACACCTTTGCAACAGGC 59.798 52.381 20.76 9.29 38.25 4.85
5802 5869 8.102676 TCCAACAGAATATGAGAATGAAACTGA 58.897 33.333 0.00 0.00 0.00 3.41
5810 5877 8.088463 AGTTCTCTCCAACAGAATATGAGAAT 57.912 34.615 0.00 0.00 39.94 2.40
5813 5880 7.492020 CAGAAGTTCTCTCCAACAGAATATGAG 59.508 40.741 1.26 0.00 32.50 2.90
5816 5883 6.070309 AGCAGAAGTTCTCTCCAACAGAATAT 60.070 38.462 1.26 0.00 32.50 1.28
5876 5945 9.093970 GCACCTAAACAAAGAAATAAAACAACT 57.906 29.630 0.00 0.00 0.00 3.16
5877 5946 9.093970 AGCACCTAAACAAAGAAATAAAACAAC 57.906 29.630 0.00 0.00 0.00 3.32
5878 5947 9.092876 CAGCACCTAAACAAAGAAATAAAACAA 57.907 29.630 0.00 0.00 0.00 2.83
5880 5949 8.642908 ACAGCACCTAAACAAAGAAATAAAAC 57.357 30.769 0.00 0.00 0.00 2.43
5884 5953 6.547880 TCCAACAGCACCTAAACAAAGAAATA 59.452 34.615 0.00 0.00 0.00 1.40
5885 5954 5.362430 TCCAACAGCACCTAAACAAAGAAAT 59.638 36.000 0.00 0.00 0.00 2.17
5886 5955 4.707448 TCCAACAGCACCTAAACAAAGAAA 59.293 37.500 0.00 0.00 0.00 2.52
5891 5960 3.626930 AGTTCCAACAGCACCTAAACAA 58.373 40.909 0.00 0.00 0.00 2.83
6313 6383 0.404040 ATTTCGCTGTTCCCTTCCCA 59.596 50.000 0.00 0.00 0.00 4.37
6314 6384 0.811281 CATTTCGCTGTTCCCTTCCC 59.189 55.000 0.00 0.00 0.00 3.97
6315 6385 0.811281 CCATTTCGCTGTTCCCTTCC 59.189 55.000 0.00 0.00 0.00 3.46
6316 6386 0.811281 CCCATTTCGCTGTTCCCTTC 59.189 55.000 0.00 0.00 0.00 3.46
6317 6387 0.611896 CCCCATTTCGCTGTTCCCTT 60.612 55.000 0.00 0.00 0.00 3.95
6318 6388 1.000896 CCCCATTTCGCTGTTCCCT 60.001 57.895 0.00 0.00 0.00 4.20
6319 6389 0.395724 ATCCCCATTTCGCTGTTCCC 60.396 55.000 0.00 0.00 0.00 3.97
6320 6390 0.740737 CATCCCCATTTCGCTGTTCC 59.259 55.000 0.00 0.00 0.00 3.62
6321 6391 1.672881 CTCATCCCCATTTCGCTGTTC 59.327 52.381 0.00 0.00 0.00 3.18
6322 6392 1.683011 CCTCATCCCCATTTCGCTGTT 60.683 52.381 0.00 0.00 0.00 3.16
6323 6393 0.107017 CCTCATCCCCATTTCGCTGT 60.107 55.000 0.00 0.00 0.00 4.40
6324 6394 0.181114 TCCTCATCCCCATTTCGCTG 59.819 55.000 0.00 0.00 0.00 5.18
6325 6395 1.143813 ATCCTCATCCCCATTTCGCT 58.856 50.000 0.00 0.00 0.00 4.93
6326 6396 1.610522 CAATCCTCATCCCCATTTCGC 59.389 52.381 0.00 0.00 0.00 4.70
6327 6397 2.620115 CACAATCCTCATCCCCATTTCG 59.380 50.000 0.00 0.00 0.00 3.46
6328 6398 3.887716 CTCACAATCCTCATCCCCATTTC 59.112 47.826 0.00 0.00 0.00 2.17
6329 6399 3.270433 ACTCACAATCCTCATCCCCATTT 59.730 43.478 0.00 0.00 0.00 2.32
6330 6400 2.854967 ACTCACAATCCTCATCCCCATT 59.145 45.455 0.00 0.00 0.00 3.16
6331 6401 2.496297 ACTCACAATCCTCATCCCCAT 58.504 47.619 0.00 0.00 0.00 4.00
6332 6402 1.971149 ACTCACAATCCTCATCCCCA 58.029 50.000 0.00 0.00 0.00 4.96
6333 6403 2.239654 TCAACTCACAATCCTCATCCCC 59.760 50.000 0.00 0.00 0.00 4.81
6334 6404 3.634397 TCAACTCACAATCCTCATCCC 57.366 47.619 0.00 0.00 0.00 3.85
6335 6405 4.337555 CCATTCAACTCACAATCCTCATCC 59.662 45.833 0.00 0.00 0.00 3.51
6336 6406 4.946157 ACCATTCAACTCACAATCCTCATC 59.054 41.667 0.00 0.00 0.00 2.92
6337 6407 4.927049 ACCATTCAACTCACAATCCTCAT 58.073 39.130 0.00 0.00 0.00 2.90
6338 6408 4.371624 ACCATTCAACTCACAATCCTCA 57.628 40.909 0.00 0.00 0.00 3.86
6339 6409 4.142816 CGAACCATTCAACTCACAATCCTC 60.143 45.833 0.00 0.00 0.00 3.71
6340 6410 3.753272 CGAACCATTCAACTCACAATCCT 59.247 43.478 0.00 0.00 0.00 3.24
6341 6411 3.502211 ACGAACCATTCAACTCACAATCC 59.498 43.478 0.00 0.00 0.00 3.01
6342 6412 4.749245 ACGAACCATTCAACTCACAATC 57.251 40.909 0.00 0.00 0.00 2.67
6343 6413 4.578516 TCAACGAACCATTCAACTCACAAT 59.421 37.500 0.00 0.00 0.00 2.71
6344 6414 3.942115 TCAACGAACCATTCAACTCACAA 59.058 39.130 0.00 0.00 0.00 3.33
6345 6415 3.536570 TCAACGAACCATTCAACTCACA 58.463 40.909 0.00 0.00 0.00 3.58
6346 6416 4.749245 ATCAACGAACCATTCAACTCAC 57.251 40.909 0.00 0.00 0.00 3.51
6347 6417 4.391830 GCTATCAACGAACCATTCAACTCA 59.608 41.667 0.00 0.00 0.00 3.41
6348 6418 4.201822 GGCTATCAACGAACCATTCAACTC 60.202 45.833 0.00 0.00 0.00 3.01
6349 6419 3.689649 GGCTATCAACGAACCATTCAACT 59.310 43.478 0.00 0.00 0.00 3.16
6350 6420 3.485216 CGGCTATCAACGAACCATTCAAC 60.485 47.826 0.00 0.00 0.00 3.18
6351 6421 2.675844 CGGCTATCAACGAACCATTCAA 59.324 45.455 0.00 0.00 0.00 2.69
6352 6422 2.093921 TCGGCTATCAACGAACCATTCA 60.094 45.455 0.00 0.00 36.01 2.57
6353 6423 2.546778 TCGGCTATCAACGAACCATTC 58.453 47.619 0.00 0.00 36.01 2.67
6354 6424 2.684001 TCGGCTATCAACGAACCATT 57.316 45.000 0.00 0.00 36.01 3.16
6355 6425 2.550978 CTTCGGCTATCAACGAACCAT 58.449 47.619 0.00 0.00 43.30 3.55
6356 6426 1.404986 CCTTCGGCTATCAACGAACCA 60.405 52.381 0.00 0.00 43.30 3.67
6357 6427 1.287425 CCTTCGGCTATCAACGAACC 58.713 55.000 0.00 0.00 43.30 3.62
6358 6428 1.659098 CACCTTCGGCTATCAACGAAC 59.341 52.381 0.00 0.00 43.30 3.95
6359 6429 2.004583 CACCTTCGGCTATCAACGAA 57.995 50.000 0.00 0.00 45.61 3.85
6360 6430 0.459585 GCACCTTCGGCTATCAACGA 60.460 55.000 0.00 0.00 37.33 3.85
6361 6431 0.739462 TGCACCTTCGGCTATCAACG 60.739 55.000 0.00 0.00 0.00 4.10
6362 6432 1.668419 ATGCACCTTCGGCTATCAAC 58.332 50.000 0.00 0.00 0.00 3.18
6363 6433 3.769739 ATATGCACCTTCGGCTATCAA 57.230 42.857 0.00 0.00 0.00 2.57
6364 6434 4.882842 TTATATGCACCTTCGGCTATCA 57.117 40.909 0.00 0.00 0.00 2.15
6365 6435 5.874810 TCATTTATATGCACCTTCGGCTATC 59.125 40.000 0.00 0.00 0.00 2.08
6366 6436 5.804639 TCATTTATATGCACCTTCGGCTAT 58.195 37.500 0.00 0.00 0.00 2.97
6367 6437 5.222079 TCATTTATATGCACCTTCGGCTA 57.778 39.130 0.00 0.00 0.00 3.93
6368 6438 4.085357 TCATTTATATGCACCTTCGGCT 57.915 40.909 0.00 0.00 0.00 5.52
6369 6439 4.537015 GTTCATTTATATGCACCTTCGGC 58.463 43.478 0.00 0.00 0.00 5.54
6370 6440 4.023193 GGGTTCATTTATATGCACCTTCGG 60.023 45.833 13.02 0.00 44.52 4.30
6371 6441 4.578516 TGGGTTCATTTATATGCACCTTCG 59.421 41.667 13.02 0.00 44.52 3.79
6372 6442 6.273071 GTTGGGTTCATTTATATGCACCTTC 58.727 40.000 13.02 1.19 44.52 3.46
6373 6443 5.163561 CGTTGGGTTCATTTATATGCACCTT 60.164 40.000 13.02 0.00 44.52 3.50
6374 6444 4.338118 CGTTGGGTTCATTTATATGCACCT 59.662 41.667 13.02 0.00 44.52 4.00
6375 6445 4.336993 TCGTTGGGTTCATTTATATGCACC 59.663 41.667 6.46 6.46 44.43 5.01
6376 6446 5.295787 TCTCGTTGGGTTCATTTATATGCAC 59.704 40.000 0.00 0.00 0.00 4.57
6377 6447 5.432645 TCTCGTTGGGTTCATTTATATGCA 58.567 37.500 0.00 0.00 0.00 3.96
6378 6448 6.428159 AGATCTCGTTGGGTTCATTTATATGC 59.572 38.462 0.00 0.00 0.00 3.14
6379 6449 7.095060 CCAGATCTCGTTGGGTTCATTTATATG 60.095 40.741 0.00 0.00 0.00 1.78
6380 6450 6.936900 CCAGATCTCGTTGGGTTCATTTATAT 59.063 38.462 0.00 0.00 0.00 0.86
6381 6451 6.099125 TCCAGATCTCGTTGGGTTCATTTATA 59.901 38.462 0.00 0.00 35.13 0.98
6382 6452 5.104527 TCCAGATCTCGTTGGGTTCATTTAT 60.105 40.000 0.00 0.00 35.13 1.40
6383 6453 4.224147 TCCAGATCTCGTTGGGTTCATTTA 59.776 41.667 0.00 0.00 35.13 1.40
6384 6454 3.009033 TCCAGATCTCGTTGGGTTCATTT 59.991 43.478 0.00 0.00 35.13 2.32
6385 6455 2.571653 TCCAGATCTCGTTGGGTTCATT 59.428 45.455 0.00 0.00 35.13 2.57
6386 6456 2.187958 TCCAGATCTCGTTGGGTTCAT 58.812 47.619 0.00 0.00 35.13 2.57
6387 6457 1.639722 TCCAGATCTCGTTGGGTTCA 58.360 50.000 0.00 0.00 35.13 3.18
6388 6458 2.939103 CAATCCAGATCTCGTTGGGTTC 59.061 50.000 0.00 0.00 35.64 3.62
6389 6459 2.571653 TCAATCCAGATCTCGTTGGGTT 59.428 45.455 0.00 0.00 38.31 4.11
6390 6460 2.169352 CTCAATCCAGATCTCGTTGGGT 59.831 50.000 0.00 0.00 35.13 4.51
6391 6461 2.169352 ACTCAATCCAGATCTCGTTGGG 59.831 50.000 8.76 8.76 35.13 4.12
6392 6462 3.533606 ACTCAATCCAGATCTCGTTGG 57.466 47.619 0.00 0.00 35.74 3.77
6393 6463 4.328440 GTCAACTCAATCCAGATCTCGTTG 59.672 45.833 0.00 0.00 33.69 4.10
6394 6464 4.221703 AGTCAACTCAATCCAGATCTCGTT 59.778 41.667 0.00 0.00 0.00 3.85
6395 6465 3.766591 AGTCAACTCAATCCAGATCTCGT 59.233 43.478 0.00 0.00 0.00 4.18
6396 6466 4.383850 AGTCAACTCAATCCAGATCTCG 57.616 45.455 0.00 0.00 0.00 4.04
6397 6467 5.580297 GTCAAGTCAACTCAATCCAGATCTC 59.420 44.000 0.00 0.00 0.00 2.75
6398 6468 5.248020 AGTCAAGTCAACTCAATCCAGATCT 59.752 40.000 0.00 0.00 0.00 2.75
6399 6469 5.486526 AGTCAAGTCAACTCAATCCAGATC 58.513 41.667 0.00 0.00 0.00 2.75
6400 6470 5.248020 AGAGTCAAGTCAACTCAATCCAGAT 59.752 40.000 6.10 0.00 44.54 2.90
6401 6471 4.590647 AGAGTCAAGTCAACTCAATCCAGA 59.409 41.667 6.10 0.00 44.54 3.86
6402 6472 4.892433 AGAGTCAAGTCAACTCAATCCAG 58.108 43.478 6.10 0.00 44.54 3.86
6403 6473 4.262635 GGAGAGTCAAGTCAACTCAATCCA 60.263 45.833 6.10 0.00 44.54 3.41
6404 6474 4.249661 GGAGAGTCAAGTCAACTCAATCC 58.750 47.826 6.10 1.85 44.54 3.01
6405 6475 4.020662 AGGGAGAGTCAAGTCAACTCAATC 60.021 45.833 6.10 0.00 44.54 2.67
6406 6476 3.906846 AGGGAGAGTCAAGTCAACTCAAT 59.093 43.478 6.10 0.00 44.54 2.57
6407 6477 3.309296 AGGGAGAGTCAAGTCAACTCAA 58.691 45.455 6.10 0.00 44.54 3.02
6408 6478 2.894126 GAGGGAGAGTCAAGTCAACTCA 59.106 50.000 6.10 0.00 44.54 3.41
6409 6479 2.894126 TGAGGGAGAGTCAAGTCAACTC 59.106 50.000 0.00 0.00 42.84 3.01
6410 6480 2.964209 TGAGGGAGAGTCAAGTCAACT 58.036 47.619 0.00 0.00 0.00 3.16
6411 6481 3.658709 CTTGAGGGAGAGTCAAGTCAAC 58.341 50.000 4.93 0.00 44.00 3.18
6417 6487 4.227197 AGAAAGACTTGAGGGAGAGTCAA 58.773 43.478 6.31 0.00 43.65 3.18
6418 6488 3.850752 AGAAAGACTTGAGGGAGAGTCA 58.149 45.455 6.31 0.00 43.65 3.41
6419 6489 4.882842 AAGAAAGACTTGAGGGAGAGTC 57.117 45.455 0.00 0.00 41.99 3.36
6420 6490 4.656112 TGAAAGAAAGACTTGAGGGAGAGT 59.344 41.667 0.00 0.00 38.98 3.24
6421 6491 5.220710 TGAAAGAAAGACTTGAGGGAGAG 57.779 43.478 0.00 0.00 38.98 3.20
6422 6492 5.630415 TTGAAAGAAAGACTTGAGGGAGA 57.370 39.130 0.00 0.00 38.98 3.71
6423 6493 6.543831 TCTTTTGAAAGAAAGACTTGAGGGAG 59.456 38.462 3.79 0.00 41.75 4.30
6424 6494 6.423182 TCTTTTGAAAGAAAGACTTGAGGGA 58.577 36.000 3.79 0.00 41.75 4.20
6425 6495 6.699575 TCTTTTGAAAGAAAGACTTGAGGG 57.300 37.500 3.79 0.00 41.75 4.30
6439 6509 4.219919 AGATCCCCCGTTTTCTTTTGAAA 58.780 39.130 0.00 0.00 45.65 2.69
6440 6510 3.839778 AGATCCCCCGTTTTCTTTTGAA 58.160 40.909 0.00 0.00 36.52 2.69
6441 6511 3.518992 AGATCCCCCGTTTTCTTTTGA 57.481 42.857 0.00 0.00 0.00 2.69
6442 6512 5.914898 AATAGATCCCCCGTTTTCTTTTG 57.085 39.130 0.00 0.00 0.00 2.44
6443 6513 5.593095 GCTAATAGATCCCCCGTTTTCTTTT 59.407 40.000 0.00 0.00 0.00 2.27
6444 6514 5.131067 GCTAATAGATCCCCCGTTTTCTTT 58.869 41.667 0.00 0.00 0.00 2.52
6445 6515 4.715713 GCTAATAGATCCCCCGTTTTCTT 58.284 43.478 0.00 0.00 0.00 2.52
6446 6516 3.244112 CGCTAATAGATCCCCCGTTTTCT 60.244 47.826 0.00 0.00 0.00 2.52
6447 6517 3.064931 CGCTAATAGATCCCCCGTTTTC 58.935 50.000 0.00 0.00 0.00 2.29
6448 6518 2.809299 GCGCTAATAGATCCCCCGTTTT 60.809 50.000 0.00 0.00 0.00 2.43
6449 6519 1.270678 GCGCTAATAGATCCCCCGTTT 60.271 52.381 0.00 0.00 0.00 3.60
6450 6520 0.320697 GCGCTAATAGATCCCCCGTT 59.679 55.000 0.00 0.00 0.00 4.44
6451 6521 1.874345 CGCGCTAATAGATCCCCCGT 61.874 60.000 5.56 0.00 0.00 5.28
6452 6522 1.153823 CGCGCTAATAGATCCCCCG 60.154 63.158 5.56 0.00 0.00 5.73
6453 6523 1.180029 TACGCGCTAATAGATCCCCC 58.820 55.000 5.73 0.00 0.00 5.40
6454 6524 2.481449 CCATACGCGCTAATAGATCCCC 60.481 54.545 5.73 0.00 0.00 4.81
6455 6525 2.810650 CCATACGCGCTAATAGATCCC 58.189 52.381 5.73 0.00 0.00 3.85
6456 6526 2.194271 GCCATACGCGCTAATAGATCC 58.806 52.381 5.73 0.00 0.00 3.36
6470 6540 2.585247 GGTCCTCACGCGCCATAC 60.585 66.667 5.73 0.00 0.00 2.39
6471 6541 2.758327 AGGTCCTCACGCGCCATA 60.758 61.111 5.73 0.00 0.00 2.74
6472 6542 4.148825 GAGGTCCTCACGCGCCAT 62.149 66.667 14.46 0.00 0.00 4.40
6475 6545 4.803426 CTGGAGGTCCTCACGCGC 62.803 72.222 20.72 0.00 36.82 6.86
6476 6546 4.803426 GCTGGAGGTCCTCACGCG 62.803 72.222 20.72 3.53 36.82 6.01
6477 6547 4.803426 CGCTGGAGGTCCTCACGC 62.803 72.222 20.72 18.80 36.82 5.34
6478 6548 3.374402 ACGCTGGAGGTCCTCACG 61.374 66.667 20.72 20.58 36.82 4.35
6479 6549 2.262915 CACGCTGGAGGTCCTCAC 59.737 66.667 20.72 10.37 36.82 3.51
6480 6550 2.117423 TCACGCTGGAGGTCCTCA 59.883 61.111 20.72 6.09 36.82 3.86
6481 6551 2.574399 GTCACGCTGGAGGTCCTC 59.426 66.667 10.78 10.78 36.82 3.71
6482 6552 2.997897 GGTCACGCTGGAGGTCCT 60.998 66.667 0.00 0.00 36.82 3.85
6483 6553 2.584391 AAGGTCACGCTGGAGGTCC 61.584 63.158 0.00 0.00 0.00 4.46
6484 6554 1.374758 CAAGGTCACGCTGGAGGTC 60.375 63.158 0.00 0.00 0.00 3.85
6485 6555 2.743718 CAAGGTCACGCTGGAGGT 59.256 61.111 0.00 0.00 0.00 3.85
6486 6556 2.743928 GCAAGGTCACGCTGGAGG 60.744 66.667 0.00 0.00 0.00 4.30
6487 6557 2.743928 GGCAAGGTCACGCTGGAG 60.744 66.667 0.00 0.00 0.00 3.86
6488 6558 3.240134 GAGGCAAGGTCACGCTGGA 62.240 63.158 0.00 0.00 0.00 3.86
6489 6559 2.743928 GAGGCAAGGTCACGCTGG 60.744 66.667 0.00 0.00 0.00 4.85
6490 6560 3.114616 CGAGGCAAGGTCACGCTG 61.115 66.667 0.00 0.00 0.00 5.18
6491 6561 4.379243 CCGAGGCAAGGTCACGCT 62.379 66.667 0.00 0.00 0.00 5.07
6494 6564 3.959991 GAGGCCGAGGCAAGGTCAC 62.960 68.421 16.65 0.00 44.11 3.67
6495 6565 3.706373 GAGGCCGAGGCAAGGTCA 61.706 66.667 16.65 0.00 44.11 4.02
6496 6566 3.394836 AGAGGCCGAGGCAAGGTC 61.395 66.667 16.65 6.67 44.11 3.85
6497 6567 3.710722 CAGAGGCCGAGGCAAGGT 61.711 66.667 16.65 0.00 44.11 3.50
6498 6568 4.479993 CCAGAGGCCGAGGCAAGG 62.480 72.222 16.65 7.61 44.11 3.61
6499 6569 3.672295 GACCAGAGGCCGAGGCAAG 62.672 68.421 16.65 2.23 44.11 4.01
6500 6570 3.706373 GACCAGAGGCCGAGGCAA 61.706 66.667 16.65 0.00 44.11 4.52
6501 6571 4.704103 AGACCAGAGGCCGAGGCA 62.704 66.667 16.65 0.00 44.11 4.75
6502 6572 4.154347 CAGACCAGAGGCCGAGGC 62.154 72.222 5.37 5.37 41.06 4.70
6503 6573 3.465403 CCAGACCAGAGGCCGAGG 61.465 72.222 9.29 9.29 0.00 4.63
6504 6574 3.465403 CCCAGACCAGAGGCCGAG 61.465 72.222 0.00 0.00 0.00 4.63
6505 6575 4.316823 ACCCAGACCAGAGGCCGA 62.317 66.667 0.00 0.00 0.00 5.54
6506 6576 3.775654 GACCCAGACCAGAGGCCG 61.776 72.222 0.00 0.00 0.00 6.13
6507 6577 2.284995 AGACCCAGACCAGAGGCC 60.285 66.667 0.00 0.00 0.00 5.19
6508 6578 2.664081 CCAGACCCAGACCAGAGGC 61.664 68.421 0.00 0.00 0.00 4.70
6509 6579 1.992277 CCCAGACCCAGACCAGAGG 60.992 68.421 0.00 0.00 0.00 3.69
6510 6580 1.992277 CCCCAGACCCAGACCAGAG 60.992 68.421 0.00 0.00 0.00 3.35
6511 6581 2.122729 CCCCAGACCCAGACCAGA 59.877 66.667 0.00 0.00 0.00 3.86
6512 6582 2.203998 ACCCCAGACCCAGACCAG 60.204 66.667 0.00 0.00 0.00 4.00
6513 6583 2.203938 GACCCCAGACCCAGACCA 60.204 66.667 0.00 0.00 0.00 4.02
6514 6584 2.203938 TGACCCCAGACCCAGACC 60.204 66.667 0.00 0.00 0.00 3.85
6515 6585 1.229209 TCTGACCCCAGACCCAGAC 60.229 63.158 0.00 0.00 44.01 3.51
6516 6586 3.282838 TCTGACCCCAGACCCAGA 58.717 61.111 0.00 0.00 44.01 3.86
6529 6599 2.100410 GCGCGTCGTCAGATCTGA 59.900 61.111 21.67 21.67 37.24 3.27
6530 6600 2.101185 AGCGCGTCGTCAGATCTG 59.899 61.111 17.07 17.07 0.00 2.90
6531 6601 2.101185 CAGCGCGTCGTCAGATCT 59.899 61.111 8.43 0.00 0.00 2.75
6532 6602 2.951745 CCAGCGCGTCGTCAGATC 60.952 66.667 8.43 0.00 0.00 2.75
6533 6603 3.440415 TCCAGCGCGTCGTCAGAT 61.440 61.111 8.43 0.00 0.00 2.90
6534 6604 4.400109 GTCCAGCGCGTCGTCAGA 62.400 66.667 8.43 0.00 0.00 3.27
6553 6623 0.872021 AAAGAATCTAGCGCGCTCCG 60.872 55.000 40.23 28.74 40.75 4.63
6554 6624 1.291132 AAAAGAATCTAGCGCGCTCC 58.709 50.000 40.23 21.37 0.00 4.70
6555 6625 4.717188 AATAAAAGAATCTAGCGCGCTC 57.283 40.909 40.23 23.47 0.00 5.03
6556 6626 4.811557 AGAAATAAAAGAATCTAGCGCGCT 59.188 37.500 38.01 38.01 0.00 5.92
6557 6627 5.084385 AGAAATAAAAGAATCTAGCGCGC 57.916 39.130 26.66 26.66 0.00 6.86
6558 6628 7.954906 AAAAGAAATAAAAGAATCTAGCGCG 57.045 32.000 0.00 0.00 0.00 6.86
6559 6629 9.341899 TCAAAAAGAAATAAAAGAATCTAGCGC 57.658 29.630 0.00 0.00 0.00 5.92
6594 6664 0.662970 TTTTCATTTGAGCCACGCGC 60.663 50.000 5.73 0.00 37.98 6.86
6595 6665 1.052287 GTTTTCATTTGAGCCACGCG 58.948 50.000 3.53 3.53 0.00 6.01
6596 6666 1.052287 CGTTTTCATTTGAGCCACGC 58.948 50.000 0.00 0.00 0.00 5.34
6597 6667 1.052287 GCGTTTTCATTTGAGCCACG 58.948 50.000 0.00 0.00 0.00 4.94
6598 6668 2.132740 TGCGTTTTCATTTGAGCCAC 57.867 45.000 0.00 0.00 0.00 5.01
6599 6669 2.879002 TTGCGTTTTCATTTGAGCCA 57.121 40.000 0.00 0.00 0.00 4.75
6600 6670 4.730600 ATTTTGCGTTTTCATTTGAGCC 57.269 36.364 0.00 0.00 0.00 4.70
6601 6671 6.791775 CCTAAATTTTGCGTTTTCATTTGAGC 59.208 34.615 0.00 0.00 0.00 4.26
6602 6672 6.791775 GCCTAAATTTTGCGTTTTCATTTGAG 59.208 34.615 0.00 0.00 0.00 3.02
6603 6673 6.563010 CGCCTAAATTTTGCGTTTTCATTTGA 60.563 34.615 20.34 0.00 43.12 2.69
6604 6674 5.559632 CGCCTAAATTTTGCGTTTTCATTTG 59.440 36.000 20.34 0.00 43.12 2.32
6605 6675 5.674989 CGCCTAAATTTTGCGTTTTCATTT 58.325 33.333 20.34 0.00 43.12 2.32
6606 6676 5.262714 CGCCTAAATTTTGCGTTTTCATT 57.737 34.783 20.34 0.00 43.12 2.57
6607 6677 4.901866 CGCCTAAATTTTGCGTTTTCAT 57.098 36.364 20.34 0.00 43.12 2.57
6615 6685 9.848172 CATTTTTGTATATCGCCTAAATTTTGC 57.152 29.630 0.00 0.00 0.00 3.68
6621 6691 9.391006 AGACTTCATTTTTGTATATCGCCTAAA 57.609 29.630 0.00 0.00 0.00 1.85
6622 6692 8.958119 AGACTTCATTTTTGTATATCGCCTAA 57.042 30.769 0.00 0.00 0.00 2.69
6623 6693 8.958119 AAGACTTCATTTTTGTATATCGCCTA 57.042 30.769 0.00 0.00 0.00 3.93
6624 6694 7.254455 CGAAGACTTCATTTTTGTATATCGCCT 60.254 37.037 15.36 0.00 0.00 5.52
6625 6695 6.846283 CGAAGACTTCATTTTTGTATATCGCC 59.154 38.462 15.36 0.00 0.00 5.54
6626 6696 7.399523 ACGAAGACTTCATTTTTGTATATCGC 58.600 34.615 15.36 0.00 0.00 4.58
6627 6697 9.831054 GTACGAAGACTTCATTTTTGTATATCG 57.169 33.333 15.36 0.00 0.00 2.92
6629 6699 9.886132 AGGTACGAAGACTTCATTTTTGTATAT 57.114 29.630 15.36 0.00 0.00 0.86
6631 6701 9.367444 CTAGGTACGAAGACTTCATTTTTGTAT 57.633 33.333 15.36 0.00 0.00 2.29
6632 6702 7.816031 CCTAGGTACGAAGACTTCATTTTTGTA 59.184 37.037 15.36 5.36 0.00 2.41
6633 6703 6.649557 CCTAGGTACGAAGACTTCATTTTTGT 59.350 38.462 15.36 6.26 0.00 2.83
6634 6704 6.649557 ACCTAGGTACGAAGACTTCATTTTTG 59.350 38.462 14.41 0.47 0.00 2.44
6635 6705 6.766429 ACCTAGGTACGAAGACTTCATTTTT 58.234 36.000 14.41 0.71 0.00 1.94
6636 6706 6.014840 TGACCTAGGTACGAAGACTTCATTTT 60.015 38.462 16.29 0.00 0.00 1.82
6637 6707 5.479375 TGACCTAGGTACGAAGACTTCATTT 59.521 40.000 16.29 1.62 0.00 2.32
6638 6708 5.014858 TGACCTAGGTACGAAGACTTCATT 58.985 41.667 16.29 4.02 0.00 2.57
6639 6709 4.398673 GTGACCTAGGTACGAAGACTTCAT 59.601 45.833 16.29 2.23 0.00 2.57
6640 6710 3.755378 GTGACCTAGGTACGAAGACTTCA 59.245 47.826 16.29 0.99 0.00 3.02
6641 6711 4.009002 AGTGACCTAGGTACGAAGACTTC 58.991 47.826 16.29 5.03 0.00 3.01
6642 6712 3.757493 CAGTGACCTAGGTACGAAGACTT 59.243 47.826 16.29 0.00 0.00 3.01
6643 6713 3.345414 CAGTGACCTAGGTACGAAGACT 58.655 50.000 16.29 7.32 0.00 3.24
6644 6714 2.159407 GCAGTGACCTAGGTACGAAGAC 60.159 54.545 16.29 0.34 0.00 3.01
6645 6715 2.089980 GCAGTGACCTAGGTACGAAGA 58.910 52.381 16.29 0.00 0.00 2.87
6646 6716 2.093106 AGCAGTGACCTAGGTACGAAG 58.907 52.381 16.29 5.46 0.00 3.79
6647 6717 2.211250 AGCAGTGACCTAGGTACGAA 57.789 50.000 16.29 0.00 0.00 3.85
6648 6718 2.636830 GTAGCAGTGACCTAGGTACGA 58.363 52.381 16.29 0.00 0.00 3.43
6649 6719 1.674962 GGTAGCAGTGACCTAGGTACG 59.325 57.143 16.29 4.67 37.17 3.67
6650 6720 3.015675 AGGTAGCAGTGACCTAGGTAC 57.984 52.381 16.29 13.23 45.82 3.34
6657 6727 1.477295 GGTACAGAGGTAGCAGTGACC 59.523 57.143 0.00 0.00 45.18 4.02
6658 6728 2.943449 GGTACAGAGGTAGCAGTGAC 57.057 55.000 0.00 0.00 45.18 3.67
6664 6734 5.064834 GCAGTTAATTTGGTACAGAGGTAGC 59.935 44.000 0.00 0.00 45.86 3.58
6665 6735 6.170506 TGCAGTTAATTTGGTACAGAGGTAG 58.829 40.000 0.00 0.00 42.39 3.18
6666 6736 6.116711 TGCAGTTAATTTGGTACAGAGGTA 57.883 37.500 0.00 0.00 42.39 3.08
6667 6737 4.980573 TGCAGTTAATTTGGTACAGAGGT 58.019 39.130 0.00 0.00 42.39 3.85
6668 6738 5.957842 TTGCAGTTAATTTGGTACAGAGG 57.042 39.130 0.00 0.00 42.39 3.69
6669 6739 7.096640 CGTTTTTGCAGTTAATTTGGTACAGAG 60.097 37.037 0.00 0.00 42.39 3.35
6670 6740 6.693545 CGTTTTTGCAGTTAATTTGGTACAGA 59.306 34.615 0.00 0.00 42.39 3.41
6671 6741 6.474102 ACGTTTTTGCAGTTAATTTGGTACAG 59.526 34.615 0.00 0.00 42.39 2.74
6672 6742 6.331061 ACGTTTTTGCAGTTAATTTGGTACA 58.669 32.000 0.00 0.00 0.00 2.90
6673 6743 6.693978 AGACGTTTTTGCAGTTAATTTGGTAC 59.306 34.615 0.00 0.00 0.00 3.34
6674 6744 6.797454 AGACGTTTTTGCAGTTAATTTGGTA 58.203 32.000 0.00 0.00 0.00 3.25
6675 6745 5.656480 AGACGTTTTTGCAGTTAATTTGGT 58.344 33.333 0.00 0.00 0.00 3.67
6676 6746 6.582437 AAGACGTTTTTGCAGTTAATTTGG 57.418 33.333 0.00 0.00 0.00 3.28
6682 6752 9.953697 ACAAAATATAAGACGTTTTTGCAGTTA 57.046 25.926 16.74 0.00 40.82 2.24
6683 6753 8.865590 ACAAAATATAAGACGTTTTTGCAGTT 57.134 26.923 16.74 0.32 40.82 3.16
6684 6754 8.865590 AACAAAATATAAGACGTTTTTGCAGT 57.134 26.923 16.74 4.50 40.82 4.40
6686 6756 9.731819 TGTAACAAAATATAAGACGTTTTTGCA 57.268 25.926 16.74 7.70 40.82 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.