Multiple sequence alignment - TraesCS4A01G222300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G222300 chr4A 100.000 2261 0 0 1 2261 529627034 529624774 0.000000e+00 4176.0
1 TraesCS4A01G222300 chr4D 96.778 1924 42 9 1 1921 65939162 65941068 0.000000e+00 3192.0
2 TraesCS4A01G222300 chr4D 96.273 161 5 1 2045 2204 65941067 65941227 1.720000e-66 263.0
3 TraesCS4A01G222300 chr4D 94.737 57 3 0 2205 2261 65941262 65941318 3.090000e-14 89.8
4 TraesCS4A01G222300 chr4B 96.203 1422 44 4 508 1921 96641896 96643315 0.000000e+00 2318.0
5 TraesCS4A01G222300 chr4B 96.674 451 15 0 1 451 96641312 96641762 0.000000e+00 750.0
6 TraesCS4A01G222300 chr4B 92.547 161 6 2 2045 2204 96643314 96643469 2.260000e-55 226.0
7 TraesCS4A01G222300 chr4B 93.220 59 2 1 2205 2261 96643504 96643562 4.000000e-13 86.1
8 TraesCS4A01G222300 chr2B 96.899 129 4 0 1918 2046 525520959 525520831 1.360000e-52 217.0
9 TraesCS4A01G222300 chr2B 93.525 139 9 0 1915 2053 407233908 407234046 8.180000e-50 207.0
10 TraesCS4A01G222300 chr2B 92.361 144 10 1 1912 2055 545760381 545760523 1.060000e-48 204.0
11 TraesCS4A01G222300 chr7A 94.776 134 7 0 1919 2052 593688623 593688490 2.280000e-50 209.0
12 TraesCS4A01G222300 chr5B 95.420 131 6 0 1916 2046 383524649 383524779 2.280000e-50 209.0
13 TraesCS4A01G222300 chr7D 93.478 138 8 1 1914 2051 194601657 194601793 1.060000e-48 204.0
14 TraesCS4A01G222300 chr3A 92.414 145 8 3 1920 2063 136477425 136477567 1.060000e-48 204.0
15 TraesCS4A01G222300 chr3A 92.857 140 8 2 1919 2056 685781926 685782065 3.810000e-48 202.0
16 TraesCS4A01G222300 chr3A 91.156 147 11 2 1915 2060 79382889 79382744 4.930000e-47 198.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G222300 chr4A 529624774 529627034 2260 True 4176.000 4176 100.000000 1 2261 1 chr4A.!!$R1 2260
1 TraesCS4A01G222300 chr4D 65939162 65941318 2156 False 1181.600 3192 95.929333 1 2261 3 chr4D.!!$F1 2260
2 TraesCS4A01G222300 chr4B 96641312 96643562 2250 False 845.025 2318 94.661000 1 2261 4 chr4B.!!$F1 2260

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
731 814 1.302511 GTGGCTCGAGGAAAAGGCA 60.303 57.895 15.58 3.11 44.76 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1925 2023 0.107848 ACAAGTATTTCCGGGCGGAG 60.108 55.0 0.0 0.0 46.06 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 113 2.440980 GCCCAGGTCATTGCTCCC 60.441 66.667 0.00 0.00 0.00 4.30
451 480 1.496060 TGACCCAACAGTCAGTGAGT 58.504 50.000 0.00 0.00 41.78 3.41
456 485 5.148651 ACCCAACAGTCAGTGAGTATAAC 57.851 43.478 0.00 0.00 0.00 1.89
538 621 6.142818 ACGAAAGATTCACAACAAATTGGA 57.857 33.333 0.00 0.00 40.42 3.53
603 686 7.603297 ATGTTACAAAAAGAACGAAACATCG 57.397 32.000 0.00 0.00 32.23 3.84
621 704 5.992729 ACATCGTTTGTGGTACAACAATAC 58.007 37.500 16.53 14.91 44.16 1.89
638 721 8.855110 ACAACAATACCTGTGAATACAATGAAA 58.145 29.630 0.00 0.00 38.67 2.69
688 771 7.881142 ACATACTCAAAAATCAAAATGTCGGA 58.119 30.769 0.00 0.00 0.00 4.55
731 814 1.302511 GTGGCTCGAGGAAAAGGCA 60.303 57.895 15.58 3.11 44.76 4.75
733 816 1.746991 GGCTCGAGGAAAAGGCAGG 60.747 63.158 15.58 0.00 37.94 4.85
750 833 4.887655 AGGCAGGTACAAAATTATACAGGC 59.112 41.667 0.00 0.00 0.00 4.85
798 891 1.538047 TCATGGCTTTCTCCTTGCAC 58.462 50.000 0.00 0.00 32.92 4.57
1014 1110 5.085275 TCCTCTCCATGGATATCTTCAGT 57.915 43.478 16.63 0.00 0.00 3.41
1185 1281 1.546476 GTTGTCTCGTCACCCAGATCT 59.454 52.381 0.00 0.00 0.00 2.75
1335 1433 5.685861 GCACAGGATAGAATCAAGACCATGA 60.686 44.000 0.00 0.00 0.00 3.07
1355 1453 3.509967 TGACATGACACCGTCTAAGTGAT 59.490 43.478 0.00 0.00 38.63 3.06
1482 1580 3.229293 AGAGCTATCATACTGCTGAGCA 58.771 45.455 7.05 7.05 37.16 4.26
1500 1598 1.898574 AGCAGTGGCCTTGAAACCG 60.899 57.895 3.32 0.00 42.56 4.44
1563 1661 1.524621 CAAGCCTGGCCATAGACGG 60.525 63.158 16.57 4.34 0.00 4.79
1919 2017 7.984475 TGGCAGTACTTACCCAATGATATAAT 58.016 34.615 8.85 0.00 0.00 1.28
1920 2018 9.106977 TGGCAGTACTTACCCAATGATATAATA 57.893 33.333 8.85 0.00 0.00 0.98
1921 2019 9.379791 GGCAGTACTTACCCAATGATATAATAC 57.620 37.037 0.00 0.00 0.00 1.89
1926 2024 8.990693 ACTTACCCAATGATATAATACTCCCT 57.009 34.615 0.00 0.00 0.00 4.20
1927 2025 9.047947 ACTTACCCAATGATATAATACTCCCTC 57.952 37.037 0.00 0.00 0.00 4.30
1928 2026 6.893020 ACCCAATGATATAATACTCCCTCC 57.107 41.667 0.00 0.00 0.00 4.30
1929 2027 5.425539 ACCCAATGATATAATACTCCCTCCG 59.574 44.000 0.00 0.00 0.00 4.63
1930 2028 5.360591 CCAATGATATAATACTCCCTCCGC 58.639 45.833 0.00 0.00 0.00 5.54
1931 2029 5.360591 CAATGATATAATACTCCCTCCGCC 58.639 45.833 0.00 0.00 0.00 6.13
1932 2030 3.371965 TGATATAATACTCCCTCCGCCC 58.628 50.000 0.00 0.00 0.00 6.13
1933 2031 1.843368 TATAATACTCCCTCCGCCCG 58.157 55.000 0.00 0.00 0.00 6.13
1934 2032 0.903454 ATAATACTCCCTCCGCCCGG 60.903 60.000 0.00 0.00 0.00 5.73
1935 2033 2.010412 TAATACTCCCTCCGCCCGGA 62.010 60.000 0.73 9.31 42.90 5.14
1936 2034 2.884179 AATACTCCCTCCGCCCGGAA 62.884 60.000 0.73 0.00 44.66 4.30
1937 2035 2.884179 ATACTCCCTCCGCCCGGAAA 62.884 60.000 0.73 0.00 44.66 3.13
1938 2036 2.884179 TACTCCCTCCGCCCGGAAAT 62.884 60.000 0.73 0.00 44.66 2.17
1939 2037 2.041715 TCCCTCCGCCCGGAAATA 60.042 61.111 0.73 0.00 44.66 1.40
1940 2038 2.110420 CCCTCCGCCCGGAAATAC 59.890 66.667 0.73 0.00 44.66 1.89
1941 2039 2.440817 CCCTCCGCCCGGAAATACT 61.441 63.158 0.73 0.00 44.66 2.12
1942 2040 1.525442 CCTCCGCCCGGAAATACTT 59.475 57.895 0.73 0.00 44.66 2.24
1943 2041 0.814010 CCTCCGCCCGGAAATACTTG 60.814 60.000 0.73 0.00 44.66 3.16
1944 2042 0.107848 CTCCGCCCGGAAATACTTGT 60.108 55.000 0.73 0.00 44.66 3.16
1945 2043 0.108041 TCCGCCCGGAAATACTTGTC 60.108 55.000 0.73 0.00 42.05 3.18
1946 2044 0.391927 CCGCCCGGAAATACTTGTCA 60.392 55.000 0.73 0.00 37.50 3.58
1947 2045 0.725117 CGCCCGGAAATACTTGTCAC 59.275 55.000 0.73 0.00 0.00 3.67
1948 2046 1.092348 GCCCGGAAATACTTGTCACC 58.908 55.000 0.73 0.00 0.00 4.02
1949 2047 1.612199 GCCCGGAAATACTTGTCACCA 60.612 52.381 0.73 0.00 0.00 4.17
1950 2048 2.785562 CCCGGAAATACTTGTCACCAA 58.214 47.619 0.73 0.00 0.00 3.67
1951 2049 3.150767 CCCGGAAATACTTGTCACCAAA 58.849 45.455 0.73 0.00 0.00 3.28
1952 2050 3.570550 CCCGGAAATACTTGTCACCAAAA 59.429 43.478 0.73 0.00 0.00 2.44
1953 2051 4.219725 CCCGGAAATACTTGTCACCAAAAT 59.780 41.667 0.73 0.00 0.00 1.82
1954 2052 5.160641 CCGGAAATACTTGTCACCAAAATG 58.839 41.667 0.00 0.00 0.00 2.32
1955 2053 5.048364 CCGGAAATACTTGTCACCAAAATGA 60.048 40.000 0.00 0.00 0.00 2.57
1956 2054 6.442952 CGGAAATACTTGTCACCAAAATGAA 58.557 36.000 0.00 0.00 0.00 2.57
1957 2055 7.090173 CGGAAATACTTGTCACCAAAATGAAT 58.910 34.615 0.00 0.00 0.00 2.57
1958 2056 8.240682 CGGAAATACTTGTCACCAAAATGAATA 58.759 33.333 0.00 0.00 0.00 1.75
1959 2057 9.921637 GGAAATACTTGTCACCAAAATGAATAA 57.078 29.630 0.00 0.00 0.00 1.40
1965 2063 8.143835 ACTTGTCACCAAAATGAATAAAAGAGG 58.856 33.333 0.00 0.00 0.00 3.69
1966 2064 7.831691 TGTCACCAAAATGAATAAAAGAGGA 57.168 32.000 0.00 0.00 0.00 3.71
1967 2065 8.421249 TGTCACCAAAATGAATAAAAGAGGAT 57.579 30.769 0.00 0.00 0.00 3.24
1968 2066 8.306038 TGTCACCAAAATGAATAAAAGAGGATG 58.694 33.333 0.00 0.00 0.00 3.51
1969 2067 8.306761 GTCACCAAAATGAATAAAAGAGGATGT 58.693 33.333 0.00 0.00 0.00 3.06
1970 2068 9.527157 TCACCAAAATGAATAAAAGAGGATGTA 57.473 29.630 0.00 0.00 0.00 2.29
1979 2077 9.132923 TGAATAAAAGAGGATGTATCTAGACGT 57.867 33.333 0.00 0.00 0.00 4.34
1980 2078 9.615295 GAATAAAAGAGGATGTATCTAGACGTC 57.385 37.037 7.70 7.70 35.04 4.34
1981 2079 8.927675 ATAAAAGAGGATGTATCTAGACGTCT 57.072 34.615 23.66 23.66 35.93 4.18
1982 2080 7.648039 AAAAGAGGATGTATCTAGACGTCTT 57.352 36.000 25.44 8.59 37.31 3.01
1983 2081 7.648039 AAAGAGGATGTATCTAGACGTCTTT 57.352 36.000 25.44 16.29 39.28 2.52
1984 2082 7.648039 AAGAGGATGTATCTAGACGTCTTTT 57.352 36.000 25.44 11.32 35.93 2.27
1985 2083 8.749026 AAGAGGATGTATCTAGACGTCTTTTA 57.251 34.615 25.44 9.99 35.93 1.52
1986 2084 8.385898 AGAGGATGTATCTAGACGTCTTTTAG 57.614 38.462 25.44 15.41 35.93 1.85
1987 2085 7.994334 AGAGGATGTATCTAGACGTCTTTTAGT 59.006 37.037 25.44 8.46 35.93 2.24
1988 2086 8.522542 AGGATGTATCTAGACGTCTTTTAGTT 57.477 34.615 25.44 12.44 35.93 2.24
1989 2087 8.623030 AGGATGTATCTAGACGTCTTTTAGTTC 58.377 37.037 25.44 12.44 35.93 3.01
1990 2088 8.623030 GGATGTATCTAGACGTCTTTTAGTTCT 58.377 37.037 25.44 7.33 35.93 3.01
1993 2091 9.881649 TGTATCTAGACGTCTTTTAGTTCTAGA 57.118 33.333 25.44 16.65 38.94 2.43
1997 2095 9.881649 TCTAGACGTCTTTTAGTTCTAGATACA 57.118 33.333 25.44 0.00 32.48 2.29
2000 2098 8.623030 AGACGTCTTTTAGTTCTAGATACATCC 58.377 37.037 13.58 0.00 0.00 3.51
2001 2099 7.714703 ACGTCTTTTAGTTCTAGATACATCCC 58.285 38.462 0.00 0.00 0.00 3.85
2002 2100 7.560626 ACGTCTTTTAGTTCTAGATACATCCCT 59.439 37.037 0.00 0.00 0.00 4.20
2003 2101 8.414778 CGTCTTTTAGTTCTAGATACATCCCTT 58.585 37.037 0.00 0.00 0.00 3.95
2010 2108 8.658840 AGTTCTAGATACATCCCTTTCTATCC 57.341 38.462 0.00 0.00 0.00 2.59
2011 2109 8.235230 AGTTCTAGATACATCCCTTTCTATCCA 58.765 37.037 0.00 0.00 0.00 3.41
2012 2110 9.041354 GTTCTAGATACATCCCTTTCTATCCAT 57.959 37.037 0.00 0.00 0.00 3.41
2013 2111 9.621239 TTCTAGATACATCCCTTTCTATCCATT 57.379 33.333 0.00 0.00 0.00 3.16
2014 2112 9.621239 TCTAGATACATCCCTTTCTATCCATTT 57.379 33.333 0.00 0.00 0.00 2.32
2016 2114 8.930846 AGATACATCCCTTTCTATCCATTTTG 57.069 34.615 0.00 0.00 0.00 2.44
2017 2115 8.727149 AGATACATCCCTTTCTATCCATTTTGA 58.273 33.333 0.00 0.00 0.00 2.69
2018 2116 9.525826 GATACATCCCTTTCTATCCATTTTGAT 57.474 33.333 0.00 0.00 0.00 2.57
2019 2117 7.592885 ACATCCCTTTCTATCCATTTTGATG 57.407 36.000 0.00 0.00 33.80 3.07
2020 2118 7.356680 ACATCCCTTTCTATCCATTTTGATGA 58.643 34.615 0.00 0.00 32.39 2.92
2021 2119 7.286316 ACATCCCTTTCTATCCATTTTGATGAC 59.714 37.037 0.00 0.00 32.39 3.06
2022 2120 6.730447 TCCCTTTCTATCCATTTTGATGACA 58.270 36.000 0.00 0.00 0.00 3.58
2023 2121 7.181361 TCCCTTTCTATCCATTTTGATGACAA 58.819 34.615 0.00 0.00 0.00 3.18
2024 2122 7.340232 TCCCTTTCTATCCATTTTGATGACAAG 59.660 37.037 0.00 0.00 37.32 3.16
2025 2123 7.123247 CCCTTTCTATCCATTTTGATGACAAGT 59.877 37.037 0.00 0.00 37.32 3.16
2026 2124 9.177608 CCTTTCTATCCATTTTGATGACAAGTA 57.822 33.333 0.00 0.00 37.32 2.24
2032 2130 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
2033 2131 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
2034 2132 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
2035 2133 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
2036 2134 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
2037 2135 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
2038 2136 2.690786 TGACAAGTATTTTCGGACGGG 58.309 47.619 0.00 0.00 0.00 5.28
2039 2137 2.004733 GACAAGTATTTTCGGACGGGG 58.995 52.381 0.00 0.00 0.00 5.73
2040 2138 1.339342 ACAAGTATTTTCGGACGGGGG 60.339 52.381 0.00 0.00 0.00 5.40
2098 2197 2.030363 CCCACATTTTTAGCGCAACTCA 60.030 45.455 11.47 0.00 0.00 3.41
2122 2221 5.541845 TCTGGAAACAAGATACTGTCACTG 58.458 41.667 0.00 0.00 42.06 3.66
2156 2255 4.424566 AAAGCCGCCGCAATGCTG 62.425 61.111 2.94 0.00 37.52 4.41
2241 2374 3.641434 AATGTGAGCTCAACTGGCTAT 57.359 42.857 20.19 1.90 40.40 2.97
2245 2378 3.260632 TGTGAGCTCAACTGGCTATACAA 59.739 43.478 20.19 0.00 40.40 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
456 485 6.071165 AGGTGCTGAATTAATTCCTTTTCCTG 60.071 38.462 22.42 4.93 35.97 3.86
603 686 5.297278 TCACAGGTATTGTTGTACCACAAAC 59.703 40.000 15.65 13.78 45.35 2.93
606 689 4.691326 TCACAGGTATTGTTGTACCACA 57.309 40.909 5.94 0.00 45.35 4.17
638 721 3.085952 TCCTGCCGATTTCCTGATTTT 57.914 42.857 0.00 0.00 0.00 1.82
700 783 5.652014 TCCTCGAGCCACATTTTGATTTATT 59.348 36.000 6.99 0.00 0.00 1.40
701 784 5.192927 TCCTCGAGCCACATTTTGATTTAT 58.807 37.500 6.99 0.00 0.00 1.40
702 785 4.584874 TCCTCGAGCCACATTTTGATTTA 58.415 39.130 6.99 0.00 0.00 1.40
719 802 2.178912 TTGTACCTGCCTTTTCCTCG 57.821 50.000 0.00 0.00 0.00 4.63
731 814 5.362105 TCCGCCTGTATAATTTTGTACCT 57.638 39.130 0.00 0.00 0.00 3.08
733 816 4.318546 CGCTCCGCCTGTATAATTTTGTAC 60.319 45.833 0.00 0.00 0.00 2.90
756 849 2.046507 CAGTGAGGCCTGGTCTGC 60.047 66.667 12.00 0.00 0.00 4.26
757 850 1.004080 CACAGTGAGGCCTGGTCTG 60.004 63.158 12.00 17.77 36.75 3.51
758 851 2.888447 GCACAGTGAGGCCTGGTCT 61.888 63.158 12.00 0.00 36.75 3.85
760 853 3.958860 GGCACAGTGAGGCCTGGT 61.959 66.667 12.00 0.00 46.74 4.00
765 858 1.310933 CCATGAAGGCACAGTGAGGC 61.311 60.000 4.15 5.98 0.00 4.70
766 859 2.864114 CCATGAAGGCACAGTGAGG 58.136 57.895 4.15 0.00 0.00 3.86
798 891 2.359602 CAGGAGTGGCACCAGCTG 60.360 66.667 15.27 6.78 41.70 4.24
900 993 2.282958 AGCGAGGAGTTGGACGGA 60.283 61.111 0.00 0.00 0.00 4.69
1185 1281 1.899814 AGTGAGGTGAGCCGAAATGTA 59.100 47.619 0.00 0.00 40.50 2.29
1308 1406 3.559242 GTCTTGATTCTATCCTGTGCAGC 59.441 47.826 0.00 0.00 0.00 5.25
1335 1433 4.537135 AATCACTTAGACGGTGTCATGT 57.463 40.909 0.00 0.00 34.60 3.21
1355 1453 6.061022 TCCAGGTAAGCATTTGACTGATAA 57.939 37.500 0.00 0.00 0.00 1.75
1482 1580 1.898574 CGGTTTCAAGGCCACTGCT 60.899 57.895 5.01 0.00 37.74 4.24
1500 1598 4.452455 GGCACATACACATATGAAGGTAGC 59.548 45.833 10.38 8.40 40.75 3.58
1550 1648 3.069586 TGAGTATTTCCGTCTATGGCCAG 59.930 47.826 13.05 0.00 0.00 4.85
1563 1661 5.877012 TGAATGCTCTCCAGTTGAGTATTTC 59.123 40.000 8.08 4.05 43.37 2.17
1919 2017 2.884179 ATTTCCGGGCGGAGGGAGTA 62.884 60.000 0.00 0.00 46.06 2.59
1920 2018 2.884179 TATTTCCGGGCGGAGGGAGT 62.884 60.000 0.00 0.00 46.06 3.85
1921 2019 2.138179 TATTTCCGGGCGGAGGGAG 61.138 63.158 0.00 0.00 46.06 4.30
1922 2020 2.041715 TATTTCCGGGCGGAGGGA 60.042 61.111 0.00 0.00 46.06 4.20
1923 2021 1.979619 AAGTATTTCCGGGCGGAGGG 61.980 60.000 0.00 0.00 46.06 4.30
1924 2022 0.814010 CAAGTATTTCCGGGCGGAGG 60.814 60.000 0.00 0.00 46.06 4.30
1925 2023 0.107848 ACAAGTATTTCCGGGCGGAG 60.108 55.000 0.00 0.00 46.06 4.63
1926 2024 0.108041 GACAAGTATTTCCGGGCGGA 60.108 55.000 0.00 0.00 43.52 5.54
1927 2025 0.391927 TGACAAGTATTTCCGGGCGG 60.392 55.000 0.00 0.00 0.00 6.13
1928 2026 0.725117 GTGACAAGTATTTCCGGGCG 59.275 55.000 0.00 0.00 0.00 6.13
1929 2027 1.092348 GGTGACAAGTATTTCCGGGC 58.908 55.000 0.00 0.00 0.00 6.13
1930 2028 2.483014 TGGTGACAAGTATTTCCGGG 57.517 50.000 0.00 0.00 37.44 5.73
1942 2040 7.831691 TCCTCTTTTATTCATTTTGGTGACA 57.168 32.000 0.00 0.00 39.83 3.58
1943 2041 8.306761 ACATCCTCTTTTATTCATTTTGGTGAC 58.693 33.333 0.00 0.00 0.00 3.67
1944 2042 8.421249 ACATCCTCTTTTATTCATTTTGGTGA 57.579 30.769 0.00 0.00 0.00 4.02
1953 2051 9.132923 ACGTCTAGATACATCCTCTTTTATTCA 57.867 33.333 0.00 0.00 0.00 2.57
1954 2052 9.615295 GACGTCTAGATACATCCTCTTTTATTC 57.385 37.037 8.70 0.00 0.00 1.75
1955 2053 9.357161 AGACGTCTAGATACATCCTCTTTTATT 57.643 33.333 18.46 0.00 0.00 1.40
1956 2054 8.927675 AGACGTCTAGATACATCCTCTTTTAT 57.072 34.615 18.46 0.00 0.00 1.40
1957 2055 8.749026 AAGACGTCTAGATACATCCTCTTTTA 57.251 34.615 20.39 0.00 0.00 1.52
1958 2056 7.648039 AAGACGTCTAGATACATCCTCTTTT 57.352 36.000 20.39 0.00 0.00 2.27
1959 2057 7.648039 AAAGACGTCTAGATACATCCTCTTT 57.352 36.000 20.39 0.67 0.00 2.52
1960 2058 7.648039 AAAAGACGTCTAGATACATCCTCTT 57.352 36.000 20.39 1.15 0.00 2.85
1961 2059 7.994334 ACTAAAAGACGTCTAGATACATCCTCT 59.006 37.037 20.39 0.00 0.00 3.69
1962 2060 8.156994 ACTAAAAGACGTCTAGATACATCCTC 57.843 38.462 20.39 0.00 0.00 3.71
1963 2061 8.522542 AACTAAAAGACGTCTAGATACATCCT 57.477 34.615 20.39 0.00 0.00 3.24
1964 2062 8.623030 AGAACTAAAAGACGTCTAGATACATCC 58.377 37.037 20.39 4.03 0.00 3.51
1967 2065 9.881649 TCTAGAACTAAAAGACGTCTAGATACA 57.118 33.333 20.39 0.43 32.48 2.29
1971 2069 9.881649 TGTATCTAGAACTAAAAGACGTCTAGA 57.118 33.333 20.39 14.48 38.94 2.43
1974 2072 8.623030 GGATGTATCTAGAACTAAAAGACGTCT 58.377 37.037 13.58 13.58 0.00 4.18
1975 2073 7.861872 GGGATGTATCTAGAACTAAAAGACGTC 59.138 40.741 7.70 7.70 0.00 4.34
1976 2074 7.560626 AGGGATGTATCTAGAACTAAAAGACGT 59.439 37.037 0.00 0.00 0.00 4.34
1977 2075 7.942990 AGGGATGTATCTAGAACTAAAAGACG 58.057 38.462 0.00 0.00 0.00 4.18
1984 2082 9.756571 GGATAGAAAGGGATGTATCTAGAACTA 57.243 37.037 0.00 0.00 0.00 2.24
1985 2083 8.235230 TGGATAGAAAGGGATGTATCTAGAACT 58.765 37.037 0.00 0.00 0.00 3.01
1986 2084 8.423906 TGGATAGAAAGGGATGTATCTAGAAC 57.576 38.462 0.00 0.00 0.00 3.01
1987 2085 9.621239 AATGGATAGAAAGGGATGTATCTAGAA 57.379 33.333 0.00 0.00 0.00 2.10
1988 2086 9.621239 AAATGGATAGAAAGGGATGTATCTAGA 57.379 33.333 0.00 0.00 0.00 2.43
1991 2089 8.727149 TCAAAATGGATAGAAAGGGATGTATCT 58.273 33.333 0.00 0.00 0.00 1.98
1992 2090 8.924511 TCAAAATGGATAGAAAGGGATGTATC 57.075 34.615 0.00 0.00 0.00 2.24
1993 2091 9.305555 CATCAAAATGGATAGAAAGGGATGTAT 57.694 33.333 0.00 0.00 0.00 2.29
1994 2092 8.501904 TCATCAAAATGGATAGAAAGGGATGTA 58.498 33.333 0.00 0.00 33.42 2.29
1995 2093 7.286316 GTCATCAAAATGGATAGAAAGGGATGT 59.714 37.037 0.00 0.00 33.42 3.06
1996 2094 7.286087 TGTCATCAAAATGGATAGAAAGGGATG 59.714 37.037 0.00 0.00 33.42 3.51
1997 2095 7.356680 TGTCATCAAAATGGATAGAAAGGGAT 58.643 34.615 0.00 0.00 33.42 3.85
1998 2096 6.730447 TGTCATCAAAATGGATAGAAAGGGA 58.270 36.000 0.00 0.00 33.42 4.20
1999 2097 7.123247 ACTTGTCATCAAAATGGATAGAAAGGG 59.877 37.037 0.00 0.00 33.42 3.95
2000 2098 8.059798 ACTTGTCATCAAAATGGATAGAAAGG 57.940 34.615 0.00 0.00 33.42 3.11
2007 2105 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
2008 2106 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
2009 2107 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
2010 2108 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
2011 2109 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
2012 2110 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
2013 2111 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
2014 2112 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
2015 2113 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
2016 2114 3.308866 CCCGTCCGAAAATACTTGTCATC 59.691 47.826 0.00 0.00 0.00 2.92
2017 2115 3.267483 CCCGTCCGAAAATACTTGTCAT 58.733 45.455 0.00 0.00 0.00 3.06
2018 2116 2.613474 CCCCGTCCGAAAATACTTGTCA 60.613 50.000 0.00 0.00 0.00 3.58
2019 2117 2.004733 CCCCGTCCGAAAATACTTGTC 58.995 52.381 0.00 0.00 0.00 3.18
2020 2118 1.339342 CCCCCGTCCGAAAATACTTGT 60.339 52.381 0.00 0.00 0.00 3.16
2021 2119 1.375551 CCCCCGTCCGAAAATACTTG 58.624 55.000 0.00 0.00 0.00 3.16
2022 2120 3.867549 CCCCCGTCCGAAAATACTT 57.132 52.632 0.00 0.00 0.00 2.24
2098 2197 6.169094 CAGTGACAGTATCTTGTTTCCAGAT 58.831 40.000 0.00 0.00 0.00 2.90
2122 2221 5.390251 GCGGCTTTCAAGTAACTTAACTACC 60.390 44.000 0.00 0.00 0.00 3.18
2156 2255 0.323725 TTCAAAGAGCCAGGCCATCC 60.324 55.000 8.22 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.