Multiple sequence alignment - TraesCS4A01G221000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G221000 chr4A 100.000 2372 0 0 1 2372 525154189 525151818 0.000000e+00 4381.0
1 TraesCS4A01G221000 chr4A 93.515 2344 104 12 6 2309 549634099 549636434 0.000000e+00 3443.0
2 TraesCS4A01G221000 chr4A 95.626 1509 47 7 809 2313 29673360 29671867 0.000000e+00 2403.0
3 TraesCS4A01G221000 chr4A 96.610 59 2 0 2309 2367 378992911 378992853 5.400000e-17 99.0
4 TraesCS4A01G221000 chr2A 95.017 2308 94 8 9 2312 340609970 340607680 0.000000e+00 3605.0
5 TraesCS4A01G221000 chr2A 94.564 2318 93 10 5 2312 605786319 605788613 0.000000e+00 3552.0
6 TraesCS4A01G221000 chr2A 92.000 75 5 1 2284 2358 15523648 15523721 1.160000e-18 104.0
7 TraesCS4A01G221000 chr3A 94.478 2336 79 13 1 2312 733879819 733877510 0.000000e+00 3554.0
8 TraesCS4A01G221000 chr5A 93.579 2336 111 21 1 2312 345653536 345651216 0.000000e+00 3446.0
9 TraesCS4A01G221000 chr5A 96.229 1379 49 1 1 1376 501877002 501878380 0.000000e+00 2255.0
10 TraesCS4A01G221000 chr6A 93.365 2336 120 18 1 2313 436398644 436400967 0.000000e+00 3422.0
11 TraesCS4A01G221000 chr6A 95.410 1111 36 4 1207 2312 136675188 136676288 0.000000e+00 1755.0
12 TraesCS4A01G221000 chr1A 93.111 2337 124 23 1 2312 7955960 7958284 0.000000e+00 3389.0
13 TraesCS4A01G221000 chr1A 91.758 1650 83 22 1 1625 539843255 539841634 0.000000e+00 2244.0
14 TraesCS4A01G221000 chr1A 95.312 64 3 0 2309 2372 60089742 60089679 4.170000e-18 102.0
15 TraesCS4A01G221000 chr1A 95.082 61 3 0 2312 2372 182035893 182035833 1.940000e-16 97.1
16 TraesCS4A01G221000 chr5B 95.476 1459 61 3 1 1456 117470892 117472348 0.000000e+00 2324.0
17 TraesCS4A01G221000 chr7B 95.865 1427 56 1 1 1424 615589532 615588106 0.000000e+00 2305.0
18 TraesCS4A01G221000 chr2B 91.667 1368 82 14 957 2312 750617348 750618695 0.000000e+00 1866.0
19 TraesCS4A01G221000 chr3B 91.502 1365 90 13 961 2312 29817209 29818560 0.000000e+00 1855.0
20 TraesCS4A01G221000 chr3B 76.647 167 24 10 1366 1527 787154790 787154946 7.030000e-11 78.7
21 TraesCS4A01G221000 chr4B 91.308 1369 96 14 957 2313 668342812 668341455 0.000000e+00 1847.0
22 TraesCS4A01G221000 chr7A 92.079 909 47 12 1414 2312 493525442 493526335 0.000000e+00 1256.0
23 TraesCS4A01G221000 chr7A 96.875 64 2 0 2309 2372 215380331 215380268 8.960000e-20 108.0
24 TraesCS4A01G221000 chr7A 95.082 61 3 0 2312 2372 610315529 610315469 1.940000e-16 97.1
25 TraesCS4A01G221000 chr2D 96.721 61 2 0 2309 2369 323508681 323508741 4.170000e-18 102.0
26 TraesCS4A01G221000 chr1D 92.754 69 5 0 2304 2372 427144438 427144370 1.500000e-17 100.0
27 TraesCS4A01G221000 chr5D 91.549 71 4 2 2299 2369 509416657 509416725 1.940000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G221000 chr4A 525151818 525154189 2371 True 4381 4381 100.000 1 2372 1 chr4A.!!$R3 2371
1 TraesCS4A01G221000 chr4A 549634099 549636434 2335 False 3443 3443 93.515 6 2309 1 chr4A.!!$F1 2303
2 TraesCS4A01G221000 chr4A 29671867 29673360 1493 True 2403 2403 95.626 809 2313 1 chr4A.!!$R1 1504
3 TraesCS4A01G221000 chr2A 340607680 340609970 2290 True 3605 3605 95.017 9 2312 1 chr2A.!!$R1 2303
4 TraesCS4A01G221000 chr2A 605786319 605788613 2294 False 3552 3552 94.564 5 2312 1 chr2A.!!$F2 2307
5 TraesCS4A01G221000 chr3A 733877510 733879819 2309 True 3554 3554 94.478 1 2312 1 chr3A.!!$R1 2311
6 TraesCS4A01G221000 chr5A 345651216 345653536 2320 True 3446 3446 93.579 1 2312 1 chr5A.!!$R1 2311
7 TraesCS4A01G221000 chr5A 501877002 501878380 1378 False 2255 2255 96.229 1 1376 1 chr5A.!!$F1 1375
8 TraesCS4A01G221000 chr6A 436398644 436400967 2323 False 3422 3422 93.365 1 2313 1 chr6A.!!$F2 2312
9 TraesCS4A01G221000 chr6A 136675188 136676288 1100 False 1755 1755 95.410 1207 2312 1 chr6A.!!$F1 1105
10 TraesCS4A01G221000 chr1A 7955960 7958284 2324 False 3389 3389 93.111 1 2312 1 chr1A.!!$F1 2311
11 TraesCS4A01G221000 chr1A 539841634 539843255 1621 True 2244 2244 91.758 1 1625 1 chr1A.!!$R3 1624
12 TraesCS4A01G221000 chr5B 117470892 117472348 1456 False 2324 2324 95.476 1 1456 1 chr5B.!!$F1 1455
13 TraesCS4A01G221000 chr7B 615588106 615589532 1426 True 2305 2305 95.865 1 1424 1 chr7B.!!$R1 1423
14 TraesCS4A01G221000 chr2B 750617348 750618695 1347 False 1866 1866 91.667 957 2312 1 chr2B.!!$F1 1355
15 TraesCS4A01G221000 chr3B 29817209 29818560 1351 False 1855 1855 91.502 961 2312 1 chr3B.!!$F1 1351
16 TraesCS4A01G221000 chr4B 668341455 668342812 1357 True 1847 1847 91.308 957 2313 1 chr4B.!!$R1 1356
17 TraesCS4A01G221000 chr7A 493525442 493526335 893 False 1256 1256 92.079 1414 2312 1 chr7A.!!$F1 898

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
135 136 0.833287 GGCAAGCTCTGGTGGAGATA 59.167 55.0 0.0 0.0 44.45 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2000 2117 0.03601 CAGTCCGGTCCATTTCAGCT 60.036 55.0 0.0 0.0 0.0 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 2.429478 ACCGTAGCCGCAAATAAAGTT 58.571 42.857 0.00 0.00 0.00 2.66
135 136 0.833287 GGCAAGCTCTGGTGGAGATA 59.167 55.000 0.00 0.00 44.45 1.98
146 147 1.893801 GGTGGAGATATGGTCTACCCG 59.106 57.143 6.10 0.00 36.93 5.28
159 160 2.821969 GTCTACCCGAAGACACAAGGTA 59.178 50.000 7.42 0.00 44.41 3.08
289 290 5.375417 TCGAGGAAAAGTCGTGTACAATA 57.625 39.130 0.00 0.00 38.60 1.90
374 375 3.056035 AGACCTTACCGTTTGATCCTCAC 60.056 47.826 0.00 0.00 0.00 3.51
411 412 9.630098 TTCTGATTCTTGCTGAATAACATTTTC 57.370 29.630 5.70 0.00 44.70 2.29
476 477 3.072184 AGGAGCTGTCTGTGATTGACTTT 59.928 43.478 0.00 0.00 35.63 2.66
523 524 2.345991 CGGGTTTTCGGAGCCAGA 59.654 61.111 4.08 0.00 37.01 3.86
561 562 0.991146 TCACTCCATGCTTTGCCCTA 59.009 50.000 0.00 0.00 0.00 3.53
602 603 6.533723 GCTTTGATGCTTTGATGATTTGATGA 59.466 34.615 0.00 0.00 0.00 2.92
762 763 2.234661 AGTTTGATGATCGGCTCACTCA 59.765 45.455 0.00 0.00 36.48 3.41
805 806 6.018433 ACCACCATTCTAGGCTTAATGAAT 57.982 37.500 18.59 10.01 35.53 2.57
882 883 6.488344 TGTATAGATTTTGTGTGCTGGTTTGA 59.512 34.615 0.00 0.00 0.00 2.69
973 975 7.292356 TGAAATAGATCTCCCACTAATGCCTAA 59.708 37.037 0.00 0.00 0.00 2.69
1449 1507 1.242076 GCTGTGAACCTCTTGTGCAT 58.758 50.000 0.00 0.00 34.11 3.96
1488 1585 4.883026 GCATTGCTGCCTGTGAAG 57.117 55.556 0.16 0.00 42.88 3.02
1489 1586 1.962144 GCATTGCTGCCTGTGAAGT 59.038 52.632 0.16 0.00 42.88 3.01
1490 1587 0.316204 GCATTGCTGCCTGTGAAGTT 59.684 50.000 0.16 0.00 42.88 2.66
1491 1588 1.541147 GCATTGCTGCCTGTGAAGTTA 59.459 47.619 0.16 0.00 42.88 2.24
1492 1589 2.165030 GCATTGCTGCCTGTGAAGTTAT 59.835 45.455 0.16 0.00 42.88 1.89
1493 1590 3.766151 CATTGCTGCCTGTGAAGTTATG 58.234 45.455 0.00 0.00 0.00 1.90
1494 1591 2.566833 TGCTGCCTGTGAAGTTATGT 57.433 45.000 0.00 0.00 0.00 2.29
1495 1592 2.153645 TGCTGCCTGTGAAGTTATGTG 58.846 47.619 0.00 0.00 0.00 3.21
1496 1593 2.224499 TGCTGCCTGTGAAGTTATGTGA 60.224 45.455 0.00 0.00 0.00 3.58
1497 1594 2.813754 GCTGCCTGTGAAGTTATGTGAA 59.186 45.455 0.00 0.00 0.00 3.18
1579 1678 7.648142 TGATCTTGTGAACCTGTGTTTATTTC 58.352 34.615 0.00 0.00 33.97 2.17
1848 1952 5.548406 GAACTAGACTAAAAAGGCTGTGGA 58.452 41.667 0.00 0.00 0.00 4.02
1873 1977 9.836076 GACCAAAACAATAGTGGACTATAAAAC 57.164 33.333 0.00 0.00 38.15 2.43
1911 2020 5.187772 AGGCTCCATTCCCAGAAAATAAAAC 59.812 40.000 0.00 0.00 0.00 2.43
1912 2021 5.046663 GGCTCCATTCCCAGAAAATAAAACA 60.047 40.000 0.00 0.00 0.00 2.83
2000 2117 1.302949 GGCTTGGCCCATGTAGACA 59.697 57.895 0.00 0.00 44.06 3.41
2016 2133 0.036388 GACAGCTGAAATGGACCGGA 60.036 55.000 23.35 0.00 0.00 5.14
2103 2220 0.601841 GACGTGGTGTGGTCGGATTT 60.602 55.000 0.00 0.00 0.00 2.17
2190 2309 3.594603 TCCAGAAGAAAGGTCGCTAAG 57.405 47.619 0.00 0.00 0.00 2.18
2313 2433 7.174946 ACAAGTTGACATATTTCTTGTAGTGGG 59.825 37.037 10.54 0.00 44.11 4.61
2314 2434 5.648092 AGTTGACATATTTCTTGTAGTGGGC 59.352 40.000 0.00 0.00 0.00 5.36
2315 2435 4.523083 TGACATATTTCTTGTAGTGGGCC 58.477 43.478 0.00 0.00 0.00 5.80
2316 2436 4.227300 TGACATATTTCTTGTAGTGGGCCT 59.773 41.667 4.53 0.00 0.00 5.19
2317 2437 5.427157 TGACATATTTCTTGTAGTGGGCCTA 59.573 40.000 4.53 0.00 0.00 3.93
2318 2438 5.930135 ACATATTTCTTGTAGTGGGCCTAG 58.070 41.667 4.53 0.00 0.00 3.02
2319 2439 5.665812 ACATATTTCTTGTAGTGGGCCTAGA 59.334 40.000 4.53 0.00 0.00 2.43
2320 2440 4.762289 ATTTCTTGTAGTGGGCCTAGAG 57.238 45.455 4.53 0.00 0.00 2.43
2321 2441 3.468071 TTCTTGTAGTGGGCCTAGAGA 57.532 47.619 4.53 0.00 0.00 3.10
2322 2442 3.689872 TCTTGTAGTGGGCCTAGAGAT 57.310 47.619 4.53 0.00 0.00 2.75
2323 2443 4.808767 TCTTGTAGTGGGCCTAGAGATA 57.191 45.455 4.53 0.00 0.00 1.98
2324 2444 4.730966 TCTTGTAGTGGGCCTAGAGATAG 58.269 47.826 4.53 0.00 0.00 2.08
2325 2445 2.877866 TGTAGTGGGCCTAGAGATAGC 58.122 52.381 4.53 0.00 0.00 2.97
2326 2446 2.447429 TGTAGTGGGCCTAGAGATAGCT 59.553 50.000 4.53 0.00 0.00 3.32
2327 2447 2.302587 AGTGGGCCTAGAGATAGCTC 57.697 55.000 4.53 0.00 41.62 4.09
2338 2458 3.196007 GAGATAGCTCTCCGACAATCG 57.804 52.381 0.00 0.00 41.86 3.34
2350 2470 3.641439 CGACAATCGGAGTGACAAATC 57.359 47.619 12.93 0.00 36.00 2.17
2351 2471 2.348666 CGACAATCGGAGTGACAAATCC 59.651 50.000 12.93 0.00 36.00 3.01
2352 2472 3.600388 GACAATCGGAGTGACAAATCCT 58.400 45.455 12.93 0.00 33.12 3.24
2353 2473 4.676986 CGACAATCGGAGTGACAAATCCTA 60.677 45.833 12.93 0.00 36.00 2.94
2354 2474 5.160607 ACAATCGGAGTGACAAATCCTAA 57.839 39.130 12.93 0.00 33.12 2.69
2355 2475 5.745227 ACAATCGGAGTGACAAATCCTAAT 58.255 37.500 12.93 0.00 33.12 1.73
2356 2476 5.817816 ACAATCGGAGTGACAAATCCTAATC 59.182 40.000 12.93 0.00 33.12 1.75
2357 2477 5.878406 ATCGGAGTGACAAATCCTAATCT 57.122 39.130 6.43 0.00 33.12 2.40
2358 2478 5.677319 TCGGAGTGACAAATCCTAATCTT 57.323 39.130 6.43 0.00 33.12 2.40
2359 2479 5.419542 TCGGAGTGACAAATCCTAATCTTG 58.580 41.667 6.43 0.00 33.12 3.02
2360 2480 5.186992 TCGGAGTGACAAATCCTAATCTTGA 59.813 40.000 6.43 0.00 33.12 3.02
2361 2481 6.051717 CGGAGTGACAAATCCTAATCTTGAT 58.948 40.000 6.43 0.00 33.12 2.57
2362 2482 6.201806 CGGAGTGACAAATCCTAATCTTGATC 59.798 42.308 6.43 0.00 33.12 2.92
2363 2483 6.484977 GGAGTGACAAATCCTAATCTTGATCC 59.515 42.308 1.45 0.00 32.51 3.36
2364 2484 6.962182 AGTGACAAATCCTAATCTTGATCCA 58.038 36.000 0.00 0.00 0.00 3.41
2365 2485 7.580910 AGTGACAAATCCTAATCTTGATCCAT 58.419 34.615 0.00 0.00 0.00 3.41
2366 2486 7.501559 AGTGACAAATCCTAATCTTGATCCATG 59.498 37.037 0.00 0.00 0.00 3.66
2367 2487 6.263842 TGACAAATCCTAATCTTGATCCATGC 59.736 38.462 0.00 0.00 0.00 4.06
2368 2488 5.537674 ACAAATCCTAATCTTGATCCATGCC 59.462 40.000 0.00 0.00 0.00 4.40
2369 2489 5.595814 AATCCTAATCTTGATCCATGCCT 57.404 39.130 0.00 0.00 0.00 4.75
2370 2490 6.708885 AATCCTAATCTTGATCCATGCCTA 57.291 37.500 0.00 0.00 0.00 3.93
2371 2491 5.489792 TCCTAATCTTGATCCATGCCTAC 57.510 43.478 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.606961 TGGCGTCTGTTCTTTGAATTTTC 58.393 39.130 0.00 0.00 0.00 2.29
75 76 1.138266 GGCACCGGAGACTTAATGCTA 59.862 52.381 9.46 0.00 33.57 3.49
135 136 1.933021 TGTGTCTTCGGGTAGACCAT 58.067 50.000 0.21 0.00 43.11 3.55
159 160 4.660168 AGCATCAAACAAAGGAGAGACAT 58.340 39.130 0.00 0.00 0.00 3.06
289 290 3.243724 AGTGCCTAGAACCAGTTCTCTT 58.756 45.455 16.02 0.00 46.13 2.85
303 304 1.044611 TGTGTGCTGTGTAGTGCCTA 58.955 50.000 0.00 0.00 0.00 3.93
476 477 2.035632 CTGTTGTGGGTGGCCTTAAAA 58.964 47.619 3.32 0.00 0.00 1.52
523 524 6.095720 GGAGTGACTTACTATAGCAGTCTTGT 59.904 42.308 23.61 13.61 40.53 3.16
561 562 3.575256 TCAAAGCTGGCTGTGAATCAAAT 59.425 39.130 12.47 0.00 37.36 2.32
602 603 2.290260 TGACTGGCTCCGAATCAAACAT 60.290 45.455 0.00 0.00 0.00 2.71
679 680 6.672147 CAACAAATAGCTACAGCAAGTTCTT 58.328 36.000 3.70 0.00 45.16 2.52
762 763 6.013293 GGTGGTTCTATATAAGATGGCTTCCT 60.013 42.308 0.00 0.00 35.56 3.36
973 975 5.316158 AGCTAGCATATGGAGGAAAATGT 57.684 39.130 18.83 0.00 0.00 2.71
1155 1175 0.445436 GAACATGAGCAGCCACTTCG 59.555 55.000 0.00 0.00 0.00 3.79
1305 1325 4.667573 TCTCTTCCTGCTCTTGAGACTTA 58.332 43.478 1.30 0.00 0.00 2.24
1449 1507 5.410746 TGCAACAAAATGCTCAAAGACAAAA 59.589 32.000 0.67 0.00 46.54 2.44
1488 1585 7.172532 TCACATAACTTCACAGGTTCACATAAC 59.827 37.037 0.00 0.00 0.00 1.89
1489 1586 7.220740 TCACATAACTTCACAGGTTCACATAA 58.779 34.615 0.00 0.00 0.00 1.90
1490 1587 6.764379 TCACATAACTTCACAGGTTCACATA 58.236 36.000 0.00 0.00 0.00 2.29
1491 1588 5.620206 TCACATAACTTCACAGGTTCACAT 58.380 37.500 0.00 0.00 0.00 3.21
1492 1589 5.029807 TCACATAACTTCACAGGTTCACA 57.970 39.130 0.00 0.00 0.00 3.58
1493 1590 5.934625 AGATCACATAACTTCACAGGTTCAC 59.065 40.000 0.00 0.00 0.00 3.18
1494 1591 6.114187 AGATCACATAACTTCACAGGTTCA 57.886 37.500 0.00 0.00 0.00 3.18
1495 1592 8.607459 CATAAGATCACATAACTTCACAGGTTC 58.393 37.037 0.00 0.00 0.00 3.62
1496 1593 8.321353 TCATAAGATCACATAACTTCACAGGTT 58.679 33.333 0.00 0.00 0.00 3.50
1497 1594 7.851228 TCATAAGATCACATAACTTCACAGGT 58.149 34.615 0.00 0.00 0.00 4.00
1579 1678 4.836825 AGTGATCCACATAACTTCACAGG 58.163 43.478 4.42 0.00 39.27 4.00
1848 1952 9.357161 TGTTTTATAGTCCACTATTGTTTTGGT 57.643 29.630 4.57 0.00 39.66 3.67
1873 1977 5.593679 ATGGAGCCTTTTCTGATGAATTG 57.406 39.130 0.00 0.00 31.56 2.32
2000 2117 0.036010 CAGTCCGGTCCATTTCAGCT 60.036 55.000 0.00 0.00 0.00 4.24
2016 2133 7.960793 CGAAAAGGTCGTAAAATAGAATCAGT 58.039 34.615 0.00 0.00 45.09 3.41
2041 2158 2.412325 CGTGGCAGAATTACGACCAAAC 60.412 50.000 0.00 0.00 40.01 2.93
2190 2309 1.005867 TGGCCGTCGTAAACTGACC 60.006 57.895 0.00 0.00 32.68 4.02
2330 2450 2.348666 GGATTTGTCACTCCGATTGTCG 59.651 50.000 0.00 0.00 40.07 4.35
2331 2451 3.600388 AGGATTTGTCACTCCGATTGTC 58.400 45.455 0.00 0.00 36.62 3.18
2332 2452 3.703001 AGGATTTGTCACTCCGATTGT 57.297 42.857 0.00 0.00 36.62 2.71
2333 2453 6.051717 AGATTAGGATTTGTCACTCCGATTG 58.948 40.000 0.00 0.00 36.62 2.67
2334 2454 6.240549 AGATTAGGATTTGTCACTCCGATT 57.759 37.500 0.00 0.00 36.62 3.34
2335 2455 5.878406 AGATTAGGATTTGTCACTCCGAT 57.122 39.130 0.00 0.00 36.62 4.18
2336 2456 5.186992 TCAAGATTAGGATTTGTCACTCCGA 59.813 40.000 0.00 0.00 36.62 4.55
2337 2457 5.419542 TCAAGATTAGGATTTGTCACTCCG 58.580 41.667 0.00 0.00 36.62 4.63
2338 2458 6.484977 GGATCAAGATTAGGATTTGTCACTCC 59.515 42.308 0.00 0.00 0.00 3.85
2339 2459 7.050377 TGGATCAAGATTAGGATTTGTCACTC 58.950 38.462 0.00 0.00 0.00 3.51
2340 2460 6.962182 TGGATCAAGATTAGGATTTGTCACT 58.038 36.000 0.00 0.00 0.00 3.41
2341 2461 7.646314 CATGGATCAAGATTAGGATTTGTCAC 58.354 38.462 0.00 0.00 0.00 3.67
2342 2462 6.263842 GCATGGATCAAGATTAGGATTTGTCA 59.736 38.462 0.00 0.00 0.00 3.58
2343 2463 6.294397 GGCATGGATCAAGATTAGGATTTGTC 60.294 42.308 0.00 0.00 0.00 3.18
2344 2464 5.537674 GGCATGGATCAAGATTAGGATTTGT 59.462 40.000 0.00 0.00 0.00 2.83
2345 2465 5.773680 AGGCATGGATCAAGATTAGGATTTG 59.226 40.000 0.00 0.00 0.00 2.32
2346 2466 5.961897 AGGCATGGATCAAGATTAGGATTT 58.038 37.500 0.00 0.00 0.00 2.17
2347 2467 5.595814 AGGCATGGATCAAGATTAGGATT 57.404 39.130 0.00 0.00 0.00 3.01
2348 2468 6.059787 GTAGGCATGGATCAAGATTAGGAT 57.940 41.667 0.00 0.00 0.00 3.24
2349 2469 5.489792 GTAGGCATGGATCAAGATTAGGA 57.510 43.478 0.00 0.00 0.00 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.