Multiple sequence alignment - TraesCS4A01G220900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G220900 chr4A 100.000 2552 0 0 1 2552 525112035 525109484 0.000000e+00 4713
1 TraesCS4A01G220900 chr4D 94.894 1469 59 11 777 2242 71531482 71532937 0.000000e+00 2283
2 TraesCS4A01G220900 chr1A 92.308 780 57 3 1 777 558654764 558653985 0.000000e+00 1105
3 TraesCS4A01G220900 chr1A 93.249 237 15 1 2317 2552 78545319 78545083 5.230000e-92 348
4 TraesCS4A01G220900 chr7A 92.005 788 59 4 1 786 77315512 77316297 0.000000e+00 1103
5 TraesCS4A01G220900 chr7A 92.298 779 57 2 2 777 579078962 579079740 0.000000e+00 1103
6 TraesCS4A01G220900 chr7A 91.784 779 60 4 1 777 105687890 105688666 0.000000e+00 1081
7 TraesCS4A01G220900 chr2A 92.199 782 58 3 2 782 39608324 39609103 0.000000e+00 1103
8 TraesCS4A01G220900 chr1D 92.051 780 58 4 1 777 386709421 386708643 0.000000e+00 1094
9 TraesCS4A01G220900 chr1D 91.656 779 63 2 1 777 471943785 471944563 0.000000e+00 1077
10 TraesCS4A01G220900 chr6A 91.699 783 59 5 1 779 512067804 512068584 0.000000e+00 1081
11 TraesCS4A01G220900 chr7D 91.549 781 62 3 1 777 589337258 589338038 0.000000e+00 1074
12 TraesCS4A01G220900 chr4B 95.441 658 27 3 1091 1746 104741227 104740571 0.000000e+00 1046
13 TraesCS4A01G220900 chr4B 95.984 249 10 0 783 1031 104741765 104741517 3.060000e-109 405
14 TraesCS4A01G220900 chr2B 83.196 726 81 27 861 1576 695518107 695517413 5.990000e-176 627
15 TraesCS4A01G220900 chr2D 86.807 523 45 9 1077 1592 578583032 578582527 1.710000e-156 562
16 TraesCS4A01G220900 chr3A 91.176 238 20 1 2316 2552 598670529 598670292 3.170000e-84 322
17 TraesCS4A01G220900 chr6D 85.714 98 14 0 1196 1293 37596240 37596143 1.250000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G220900 chr4A 525109484 525112035 2551 True 4713.0 4713 100.0000 1 2552 1 chr4A.!!$R1 2551
1 TraesCS4A01G220900 chr4D 71531482 71532937 1455 False 2283.0 2283 94.8940 777 2242 1 chr4D.!!$F1 1465
2 TraesCS4A01G220900 chr1A 558653985 558654764 779 True 1105.0 1105 92.3080 1 777 1 chr1A.!!$R2 776
3 TraesCS4A01G220900 chr7A 77315512 77316297 785 False 1103.0 1103 92.0050 1 786 1 chr7A.!!$F1 785
4 TraesCS4A01G220900 chr7A 579078962 579079740 778 False 1103.0 1103 92.2980 2 777 1 chr7A.!!$F3 775
5 TraesCS4A01G220900 chr7A 105687890 105688666 776 False 1081.0 1081 91.7840 1 777 1 chr7A.!!$F2 776
6 TraesCS4A01G220900 chr2A 39608324 39609103 779 False 1103.0 1103 92.1990 2 782 1 chr2A.!!$F1 780
7 TraesCS4A01G220900 chr1D 386708643 386709421 778 True 1094.0 1094 92.0510 1 777 1 chr1D.!!$R1 776
8 TraesCS4A01G220900 chr1D 471943785 471944563 778 False 1077.0 1077 91.6560 1 777 1 chr1D.!!$F1 776
9 TraesCS4A01G220900 chr6A 512067804 512068584 780 False 1081.0 1081 91.6990 1 779 1 chr6A.!!$F1 778
10 TraesCS4A01G220900 chr7D 589337258 589338038 780 False 1074.0 1074 91.5490 1 777 1 chr7D.!!$F1 776
11 TraesCS4A01G220900 chr4B 104740571 104741765 1194 True 725.5 1046 95.7125 783 1746 2 chr4B.!!$R1 963
12 TraesCS4A01G220900 chr2B 695517413 695518107 694 True 627.0 627 83.1960 861 1576 1 chr2B.!!$R1 715
13 TraesCS4A01G220900 chr2D 578582527 578583032 505 True 562.0 562 86.8070 1077 1592 1 chr2D.!!$R1 515

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
844 854 0.323908 CCCCCGCCACTAAAATCCAA 60.324 55.0 0.0 0.0 0.0 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2452 2702 0.035152 TAACGGAGGGCAGAGTACGA 60.035 55.0 0.0 0.0 0.0 3.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
229 230 1.674359 AAACTGTTGTGCATCCGACA 58.326 45.000 0.00 0.00 0.00 4.35
249 252 7.967854 TCCGACATGCTATTTGACAATAAAAAG 59.032 33.333 0.00 0.00 0.00 2.27
315 319 7.560991 ACATGGCAATAAAAGAGGATATGTTGA 59.439 33.333 0.00 0.00 0.00 3.18
316 320 7.333528 TGGCAATAAAAGAGGATATGTTGAC 57.666 36.000 0.00 0.00 0.00 3.18
436 440 2.285083 CCAATGAAACGGGATTCGCTA 58.715 47.619 0.00 0.00 43.89 4.26
493 497 5.178797 AGAGAATGGTCGAAACAACTATGG 58.821 41.667 0.00 0.00 0.00 2.74
618 627 4.445735 CCGACCAACCCCATCACTATTAAT 60.446 45.833 0.00 0.00 0.00 1.40
625 634 7.826252 CCAACCCCATCACTATTAATATCTCAG 59.174 40.741 0.00 0.00 0.00 3.35
639 648 1.002069 TCTCAGGGGCCAAACATGAT 58.998 50.000 4.39 0.00 0.00 2.45
641 650 1.002069 TCAGGGGCCAAACATGATCT 58.998 50.000 4.39 0.00 0.00 2.75
650 659 4.024556 GGCCAAACATGATCTATGAGAACG 60.025 45.833 0.00 0.00 39.21 3.95
653 662 5.812127 CCAAACATGATCTATGAGAACGTCA 59.188 40.000 0.00 0.00 39.21 4.35
654 663 6.019237 CCAAACATGATCTATGAGAACGTCAG 60.019 42.308 0.00 0.00 39.07 3.51
656 665 5.826586 ACATGATCTATGAGAACGTCAGAC 58.173 41.667 0.00 0.00 39.07 3.51
684 693 2.958818 CTCTGTAGCCCCACCACTATA 58.041 52.381 0.00 0.00 0.00 1.31
700 709 6.370442 CACCACTATAAAGACCGTTTTGATGA 59.630 38.462 0.00 0.00 0.00 2.92
793 803 4.167268 GCTAGTCTCTTGTAACGTGGAAG 58.833 47.826 0.00 0.00 0.00 3.46
844 854 0.323908 CCCCCGCCACTAAAATCCAA 60.324 55.000 0.00 0.00 0.00 3.53
957 967 2.515057 AAGAAACCGCACGGCACA 60.515 55.556 9.43 0.00 39.32 4.57
1502 1745 3.311110 AGCGAAGGACGGCTCCAA 61.311 61.111 0.00 0.00 39.39 3.53
1664 1912 1.694150 GTGGATGGATGGCTACAGCTA 59.306 52.381 0.54 0.00 41.70 3.32
1667 1915 3.165875 GGATGGATGGCTACAGCTACTA 58.834 50.000 0.54 0.00 41.70 1.82
1719 1967 2.562298 TGTTAGCTTGCTTCAATTGGGG 59.438 45.455 5.42 0.00 0.00 4.96
1721 1969 1.078918 GCTTGCTTCAATTGGGGCC 60.079 57.895 16.62 0.00 0.00 5.80
1731 1979 0.825010 AATTGGGGCCGATGATCTGC 60.825 55.000 0.00 0.00 0.00 4.26
1746 1995 0.178767 TCTGCGTGCATGGCTTCTAT 59.821 50.000 8.27 0.00 0.00 1.98
1747 1996 0.306840 CTGCGTGCATGGCTTCTATG 59.693 55.000 8.27 0.00 0.00 2.23
1756 2005 6.513884 CGTGCATGGCTTCTATGAATTGTAAT 60.514 38.462 0.00 0.00 0.00 1.89
1762 2011 6.929049 TGGCTTCTATGAATTGTAATCCTACG 59.071 38.462 0.00 0.00 0.00 3.51
1776 2026 1.009829 CCTACGGACTCTTGCATTGC 58.990 55.000 0.46 0.46 0.00 3.56
1790 2040 3.273434 TGCATTGCTGATAGGTGAAGTC 58.727 45.455 10.49 0.00 0.00 3.01
1801 2051 2.003072 AGGTGAAGTCCCCCAAATCAT 58.997 47.619 0.00 0.00 0.00 2.45
1828 2078 6.757947 TCGTAAGTAAGTTCATATTTTCCCCG 59.242 38.462 0.00 0.00 39.48 5.73
1831 2081 5.258051 AGTAAGTTCATATTTTCCCCGCAA 58.742 37.500 0.00 0.00 0.00 4.85
1833 2083 5.476091 AAGTTCATATTTTCCCCGCAAAA 57.524 34.783 0.00 0.00 0.00 2.44
1834 2084 5.072040 AGTTCATATTTTCCCCGCAAAAG 57.928 39.130 0.00 0.00 0.00 2.27
1840 2090 6.648725 TCATATTTTCCCCGCAAAAGAAAAAG 59.351 34.615 0.00 0.00 41.39 2.27
1874 2124 7.921786 ATTTGATGTACCCGTATGATATTGG 57.078 36.000 0.00 0.00 0.00 3.16
1875 2125 6.428083 TTGATGTACCCGTATGATATTGGT 57.572 37.500 0.00 2.19 0.00 3.67
1880 2130 1.280998 CCCGTATGATATTGGTCCCCC 59.719 57.143 0.00 0.00 0.00 5.40
1932 2182 1.600107 GTTGTGACATAGCCGGGGA 59.400 57.895 2.18 0.00 0.00 4.81
1938 2188 0.759346 GACATAGCCGGGGACATCTT 59.241 55.000 2.18 0.00 0.00 2.40
1953 2203 6.330278 GGGACATCTTTTGGTGCTAATTTAC 58.670 40.000 0.00 0.00 0.00 2.01
1993 2243 4.453136 TGGTCTTTAGTTAAACGCATGGTC 59.547 41.667 0.00 0.00 0.00 4.02
2025 2275 7.443259 TTGGAGCACTGTTAGTTAAATAACC 57.557 36.000 19.86 7.33 36.88 2.85
2034 2284 8.439172 ACTGTTAGTTAAATAACCAACCACCTA 58.561 33.333 19.86 1.18 37.11 3.08
2036 2286 8.439172 TGTTAGTTAAATAACCAACCACCTAGT 58.561 33.333 19.86 0.00 37.11 2.57
2037 2287 9.942850 GTTAGTTAAATAACCAACCACCTAGTA 57.057 33.333 13.53 0.00 33.61 1.82
2059 2309 2.739885 TGTATTGCAATTGTGGCCAC 57.260 45.000 29.67 29.67 0.00 5.01
2061 2311 2.230992 TGTATTGCAATTGTGGCCACTC 59.769 45.455 34.75 18.68 0.00 3.51
2072 2322 0.257328 TGGCCACTCAGGTGTGAAAA 59.743 50.000 0.00 0.00 41.53 2.29
2113 2363 1.071471 CACGGCTGAAAGGGACACT 59.929 57.895 0.00 0.00 0.00 3.55
2124 2374 5.313712 TGAAAGGGACACTACAATTCCTTC 58.686 41.667 0.00 0.00 33.96 3.46
2129 2379 4.003648 GGACACTACAATTCCTTCAGTGG 58.996 47.826 5.17 0.00 40.69 4.00
2156 2406 9.473007 TGAATACTACATTTTTCAATCCCATGA 57.527 29.630 0.00 0.00 0.00 3.07
2186 2436 4.284490 GTGGCCAGATATGGATGAGACTAA 59.716 45.833 11.49 0.00 0.00 2.24
2236 2486 5.358725 ACGAACCCCACCAATAATCATTAAC 59.641 40.000 0.00 0.00 0.00 2.01
2242 2492 8.065007 ACCCCACCAATAATCATTAACTGTTAT 58.935 33.333 0.37 0.00 0.00 1.89
2243 2493 8.923270 CCCCACCAATAATCATTAACTGTTATT 58.077 33.333 0.37 0.00 0.00 1.40
2250 2500 6.885735 AATCATTAACTGTTATTTTGCCGC 57.114 33.333 0.37 0.00 0.00 6.53
2251 2501 4.407818 TCATTAACTGTTATTTTGCCGCG 58.592 39.130 0.00 0.00 0.00 6.46
2252 2502 3.900388 TTAACTGTTATTTTGCCGCGT 57.100 38.095 4.92 0.00 0.00 6.01
2253 2503 2.785713 AACTGTTATTTTGCCGCGTT 57.214 40.000 4.92 0.00 0.00 4.84
2254 2504 2.325509 ACTGTTATTTTGCCGCGTTC 57.674 45.000 4.92 0.00 0.00 3.95
2255 2505 1.604755 ACTGTTATTTTGCCGCGTTCA 59.395 42.857 4.92 0.00 0.00 3.18
2256 2506 1.976045 CTGTTATTTTGCCGCGTTCAC 59.024 47.619 4.92 0.00 0.00 3.18
2257 2507 1.333931 TGTTATTTTGCCGCGTTCACA 59.666 42.857 4.92 0.00 0.00 3.58
2258 2508 2.030717 TGTTATTTTGCCGCGTTCACAT 60.031 40.909 4.92 0.50 0.00 3.21
2259 2509 2.535934 TATTTTGCCGCGTTCACATC 57.464 45.000 4.92 0.00 0.00 3.06
2260 2510 0.881118 ATTTTGCCGCGTTCACATCT 59.119 45.000 4.92 0.00 0.00 2.90
2261 2511 0.665835 TTTTGCCGCGTTCACATCTT 59.334 45.000 4.92 0.00 0.00 2.40
2262 2512 0.237235 TTTGCCGCGTTCACATCTTC 59.763 50.000 4.92 0.00 0.00 2.87
2263 2513 1.573829 TTGCCGCGTTCACATCTTCC 61.574 55.000 4.92 0.00 0.00 3.46
2264 2514 2.032634 GCCGCGTTCACATCTTCCA 61.033 57.895 4.92 0.00 0.00 3.53
2265 2515 1.787847 CCGCGTTCACATCTTCCAC 59.212 57.895 4.92 0.00 0.00 4.02
2266 2516 1.416049 CGCGTTCACATCTTCCACG 59.584 57.895 0.00 0.00 0.00 4.94
2267 2517 1.282248 CGCGTTCACATCTTCCACGT 61.282 55.000 0.00 0.00 33.36 4.49
2268 2518 0.438830 GCGTTCACATCTTCCACGTC 59.561 55.000 0.00 0.00 33.36 4.34
2269 2519 1.778334 CGTTCACATCTTCCACGTCA 58.222 50.000 0.00 0.00 0.00 4.35
2270 2520 1.455786 CGTTCACATCTTCCACGTCAC 59.544 52.381 0.00 0.00 0.00 3.67
2271 2521 2.755650 GTTCACATCTTCCACGTCACT 58.244 47.619 0.00 0.00 0.00 3.41
2272 2522 3.131396 GTTCACATCTTCCACGTCACTT 58.869 45.455 0.00 0.00 0.00 3.16
2273 2523 3.469008 TCACATCTTCCACGTCACTTT 57.531 42.857 0.00 0.00 0.00 2.66
2274 2524 4.594123 TCACATCTTCCACGTCACTTTA 57.406 40.909 0.00 0.00 0.00 1.85
2275 2525 4.951254 TCACATCTTCCACGTCACTTTAA 58.049 39.130 0.00 0.00 0.00 1.52
2276 2526 5.547465 TCACATCTTCCACGTCACTTTAAT 58.453 37.500 0.00 0.00 0.00 1.40
2277 2527 5.995282 TCACATCTTCCACGTCACTTTAATT 59.005 36.000 0.00 0.00 0.00 1.40
2278 2528 7.156000 TCACATCTTCCACGTCACTTTAATTA 58.844 34.615 0.00 0.00 0.00 1.40
2279 2529 7.822334 TCACATCTTCCACGTCACTTTAATTAT 59.178 33.333 0.00 0.00 0.00 1.28
2280 2530 7.904977 CACATCTTCCACGTCACTTTAATTATG 59.095 37.037 0.00 0.00 0.00 1.90
2281 2531 6.978343 TCTTCCACGTCACTTTAATTATGG 57.022 37.500 0.00 0.00 0.00 2.74
2282 2532 6.703319 TCTTCCACGTCACTTTAATTATGGA 58.297 36.000 0.00 0.00 33.21 3.41
2283 2533 6.816640 TCTTCCACGTCACTTTAATTATGGAG 59.183 38.462 0.00 0.00 36.41 3.86
2284 2534 6.288941 TCCACGTCACTTTAATTATGGAGA 57.711 37.500 0.00 0.00 31.45 3.71
2285 2535 6.703319 TCCACGTCACTTTAATTATGGAGAA 58.297 36.000 0.00 0.00 31.45 2.87
2286 2536 6.592607 TCCACGTCACTTTAATTATGGAGAAC 59.407 38.462 0.00 0.00 31.45 3.01
2287 2537 6.455113 CCACGTCACTTTAATTATGGAGAACG 60.455 42.308 0.00 14.32 0.00 3.95
2288 2538 6.090358 CACGTCACTTTAATTATGGAGAACGT 59.910 38.462 15.03 15.03 36.39 3.99
2289 2539 6.647895 ACGTCACTTTAATTATGGAGAACGTT 59.352 34.615 0.00 0.00 34.25 3.99
2290 2540 6.953743 CGTCACTTTAATTATGGAGAACGTTG 59.046 38.462 5.00 0.00 0.00 4.10
2291 2541 6.741358 GTCACTTTAATTATGGAGAACGTTGC 59.259 38.462 5.00 0.00 0.00 4.17
2292 2542 5.732647 CACTTTAATTATGGAGAACGTTGCG 59.267 40.000 5.00 0.00 0.00 4.85
2293 2543 5.410439 ACTTTAATTATGGAGAACGTTGCGT 59.590 36.000 5.00 0.00 43.97 5.24
2294 2544 6.591062 ACTTTAATTATGGAGAACGTTGCGTA 59.409 34.615 5.00 0.00 39.99 4.42
2295 2545 4.852609 AATTATGGAGAACGTTGCGTAC 57.147 40.909 5.00 0.00 39.99 3.67
2296 2546 3.581024 TTATGGAGAACGTTGCGTACT 57.419 42.857 5.00 0.00 39.99 2.73
2297 2547 1.710013 ATGGAGAACGTTGCGTACTG 58.290 50.000 5.00 0.00 39.99 2.74
2298 2548 0.669619 TGGAGAACGTTGCGTACTGA 59.330 50.000 5.00 0.00 39.99 3.41
2299 2549 1.058404 GGAGAACGTTGCGTACTGAC 58.942 55.000 5.00 0.00 39.99 3.51
2308 2558 4.487412 CGTACTGACGGACCGGCC 62.487 72.222 19.30 9.52 45.63 6.13
2321 2571 4.880537 CGGCCGAAGCTGCTCGAT 62.881 66.667 24.07 0.00 41.44 3.59
2322 2572 2.964389 GGCCGAAGCTGCTCGATC 60.964 66.667 18.46 6.44 41.44 3.69
2323 2573 3.326210 GCCGAAGCTGCTCGATCG 61.326 66.667 9.36 9.36 41.44 3.69
2324 2574 3.326210 CCGAAGCTGCTCGATCGC 61.326 66.667 11.09 0.00 41.44 4.58
2325 2575 3.676348 CGAAGCTGCTCGATCGCG 61.676 66.667 11.09 5.24 41.44 5.87
2326 2576 2.278206 GAAGCTGCTCGATCGCGA 60.278 61.111 13.09 13.09 45.71 5.87
2339 2589 2.731348 CGCGAAGGGATCTAGCGC 60.731 66.667 0.00 0.00 46.37 5.92
2340 2590 2.731374 GCGAAGGGATCTAGCGCT 59.269 61.111 17.26 17.26 40.98 5.92
2341 2591 1.853114 CGCGAAGGGATCTAGCGCTA 61.853 60.000 17.75 17.75 46.37 4.26
2342 2592 0.387494 GCGAAGGGATCTAGCGCTAC 60.387 60.000 14.45 3.75 40.98 3.58
2343 2593 0.110147 CGAAGGGATCTAGCGCTACG 60.110 60.000 14.45 9.25 0.00 3.51
2344 2594 1.236628 GAAGGGATCTAGCGCTACGA 58.763 55.000 14.45 15.23 0.00 3.43
2345 2595 1.813786 GAAGGGATCTAGCGCTACGAT 59.186 52.381 21.62 21.62 0.00 3.73
2346 2596 1.169577 AGGGATCTAGCGCTACGATG 58.830 55.000 24.61 12.91 0.00 3.84
2347 2597 0.882474 GGGATCTAGCGCTACGATGT 59.118 55.000 24.61 10.38 0.00 3.06
2348 2598 1.135632 GGGATCTAGCGCTACGATGTC 60.136 57.143 24.61 18.06 0.00 3.06
2349 2599 1.807742 GGATCTAGCGCTACGATGTCT 59.192 52.381 24.61 9.56 0.00 3.41
2350 2600 2.159626 GGATCTAGCGCTACGATGTCTC 60.160 54.545 24.61 15.35 0.00 3.36
2351 2601 1.227639 TCTAGCGCTACGATGTCTCC 58.772 55.000 14.45 0.00 0.00 3.71
2352 2602 0.238817 CTAGCGCTACGATGTCTCCC 59.761 60.000 14.45 0.00 0.00 4.30
2353 2603 1.504647 TAGCGCTACGATGTCTCCCG 61.505 60.000 14.45 0.00 0.00 5.14
2354 2604 2.831366 GCGCTACGATGTCTCCCGA 61.831 63.158 0.00 0.00 0.00 5.14
2355 2605 1.950007 CGCTACGATGTCTCCCGAT 59.050 57.895 0.00 0.00 0.00 4.18
2356 2606 1.154197 CGCTACGATGTCTCCCGATA 58.846 55.000 0.00 0.00 0.00 2.92
2357 2607 1.136029 CGCTACGATGTCTCCCGATAC 60.136 57.143 0.00 0.00 0.00 2.24
2358 2608 1.878088 GCTACGATGTCTCCCGATACA 59.122 52.381 0.00 0.00 0.00 2.29
2359 2609 2.350580 GCTACGATGTCTCCCGATACAC 60.351 54.545 0.00 0.00 0.00 2.90
2360 2610 0.661552 ACGATGTCTCCCGATACACG 59.338 55.000 0.00 0.00 42.18 4.49
2361 2611 0.661552 CGATGTCTCCCGATACACGT 59.338 55.000 0.00 0.00 40.78 4.49
2362 2612 1.065102 CGATGTCTCCCGATACACGTT 59.935 52.381 0.00 0.00 40.78 3.99
2363 2613 2.479049 CGATGTCTCCCGATACACGTTT 60.479 50.000 0.00 0.00 40.78 3.60
2364 2614 3.518590 GATGTCTCCCGATACACGTTTT 58.481 45.455 0.00 0.00 40.78 2.43
2365 2615 2.950433 TGTCTCCCGATACACGTTTTC 58.050 47.619 0.00 0.00 40.78 2.29
2366 2616 2.265683 GTCTCCCGATACACGTTTTCC 58.734 52.381 0.00 0.00 40.78 3.13
2367 2617 1.894466 TCTCCCGATACACGTTTTCCA 59.106 47.619 0.00 0.00 40.78 3.53
2368 2618 2.498481 TCTCCCGATACACGTTTTCCAT 59.502 45.455 0.00 0.00 40.78 3.41
2369 2619 3.055675 TCTCCCGATACACGTTTTCCATT 60.056 43.478 0.00 0.00 40.78 3.16
2370 2620 3.004171 TCCCGATACACGTTTTCCATTG 58.996 45.455 0.00 0.00 40.78 2.82
2371 2621 2.745281 CCCGATACACGTTTTCCATTGT 59.255 45.455 0.00 0.00 40.78 2.71
2372 2622 3.189702 CCCGATACACGTTTTCCATTGTT 59.810 43.478 0.00 0.00 40.78 2.83
2373 2623 4.320641 CCCGATACACGTTTTCCATTGTTT 60.321 41.667 0.00 0.00 40.78 2.83
2374 2624 4.615121 CCGATACACGTTTTCCATTGTTTG 59.385 41.667 0.00 0.00 40.78 2.93
2375 2625 5.209240 CGATACACGTTTTCCATTGTTTGT 58.791 37.500 0.00 0.00 37.22 2.83
2376 2626 5.683743 CGATACACGTTTTCCATTGTTTGTT 59.316 36.000 0.00 0.00 37.22 2.83
2377 2627 6.197468 CGATACACGTTTTCCATTGTTTGTTT 59.803 34.615 0.00 0.00 37.22 2.83
2378 2628 7.253817 CGATACACGTTTTCCATTGTTTGTTTT 60.254 33.333 0.00 0.00 37.22 2.43
2379 2629 6.546972 ACACGTTTTCCATTGTTTGTTTTT 57.453 29.167 0.00 0.00 0.00 1.94
2380 2630 6.594886 ACACGTTTTCCATTGTTTGTTTTTC 58.405 32.000 0.00 0.00 0.00 2.29
2381 2631 6.018542 CACGTTTTCCATTGTTTGTTTTTCC 58.981 36.000 0.00 0.00 0.00 3.13
2382 2632 5.935206 ACGTTTTCCATTGTTTGTTTTTCCT 59.065 32.000 0.00 0.00 0.00 3.36
2383 2633 6.428465 ACGTTTTCCATTGTTTGTTTTTCCTT 59.572 30.769 0.00 0.00 0.00 3.36
2384 2634 7.041030 ACGTTTTCCATTGTTTGTTTTTCCTTT 60.041 29.630 0.00 0.00 0.00 3.11
2385 2635 7.480229 CGTTTTCCATTGTTTGTTTTTCCTTTC 59.520 33.333 0.00 0.00 0.00 2.62
2386 2636 6.993786 TTCCATTGTTTGTTTTTCCTTTCC 57.006 33.333 0.00 0.00 0.00 3.13
2387 2637 6.306643 TCCATTGTTTGTTTTTCCTTTCCT 57.693 33.333 0.00 0.00 0.00 3.36
2388 2638 6.345298 TCCATTGTTTGTTTTTCCTTTCCTC 58.655 36.000 0.00 0.00 0.00 3.71
2389 2639 5.234116 CCATTGTTTGTTTTTCCTTTCCTCG 59.766 40.000 0.00 0.00 0.00 4.63
2390 2640 4.379339 TGTTTGTTTTTCCTTTCCTCGG 57.621 40.909 0.00 0.00 0.00 4.63
2391 2641 3.120792 GTTTGTTTTTCCTTTCCTCGGC 58.879 45.455 0.00 0.00 0.00 5.54
2392 2642 1.324383 TGTTTTTCCTTTCCTCGGCC 58.676 50.000 0.00 0.00 0.00 6.13
2393 2643 0.601558 GTTTTTCCTTTCCTCGGCCC 59.398 55.000 0.00 0.00 0.00 5.80
2394 2644 0.891904 TTTTTCCTTTCCTCGGCCCG 60.892 55.000 0.00 0.00 0.00 6.13
2395 2645 3.912745 TTTCCTTTCCTCGGCCCGC 62.913 63.158 0.00 0.00 0.00 6.13
2419 2669 3.161450 GCCCTAGGCCCATCACGA 61.161 66.667 2.05 0.00 44.06 4.35
2420 2670 2.822399 CCCTAGGCCCATCACGAC 59.178 66.667 2.05 0.00 0.00 4.34
2421 2671 1.762460 CCCTAGGCCCATCACGACT 60.762 63.158 2.05 0.00 0.00 4.18
2422 2672 1.443407 CCTAGGCCCATCACGACTG 59.557 63.158 0.00 0.00 0.00 3.51
2423 2673 1.330655 CCTAGGCCCATCACGACTGT 61.331 60.000 0.00 0.00 0.00 3.55
2424 2674 0.537188 CTAGGCCCATCACGACTGTT 59.463 55.000 0.00 0.00 0.00 3.16
2425 2675 0.981183 TAGGCCCATCACGACTGTTT 59.019 50.000 0.00 0.00 0.00 2.83
2426 2676 0.110486 AGGCCCATCACGACTGTTTT 59.890 50.000 0.00 0.00 0.00 2.43
2427 2677 0.958822 GGCCCATCACGACTGTTTTT 59.041 50.000 0.00 0.00 0.00 1.94
2428 2678 1.068541 GGCCCATCACGACTGTTTTTC 60.069 52.381 0.00 0.00 0.00 2.29
2429 2679 1.880027 GCCCATCACGACTGTTTTTCT 59.120 47.619 0.00 0.00 0.00 2.52
2430 2680 2.293399 GCCCATCACGACTGTTTTTCTT 59.707 45.455 0.00 0.00 0.00 2.52
2431 2681 3.243401 GCCCATCACGACTGTTTTTCTTT 60.243 43.478 0.00 0.00 0.00 2.52
2432 2682 4.537015 CCCATCACGACTGTTTTTCTTTC 58.463 43.478 0.00 0.00 0.00 2.62
2433 2683 4.275936 CCCATCACGACTGTTTTTCTTTCT 59.724 41.667 0.00 0.00 0.00 2.52
2434 2684 5.444122 CCATCACGACTGTTTTTCTTTCTC 58.556 41.667 0.00 0.00 0.00 2.87
2435 2685 5.237344 CCATCACGACTGTTTTTCTTTCTCT 59.763 40.000 0.00 0.00 0.00 3.10
2436 2686 5.968387 TCACGACTGTTTTTCTTTCTCTC 57.032 39.130 0.00 0.00 0.00 3.20
2437 2687 5.416083 TCACGACTGTTTTTCTTTCTCTCA 58.584 37.500 0.00 0.00 0.00 3.27
2438 2688 6.049149 TCACGACTGTTTTTCTTTCTCTCAT 58.951 36.000 0.00 0.00 0.00 2.90
2439 2689 6.201044 TCACGACTGTTTTTCTTTCTCTCATC 59.799 38.462 0.00 0.00 0.00 2.92
2440 2690 6.018751 CACGACTGTTTTTCTTTCTCTCATCA 60.019 38.462 0.00 0.00 0.00 3.07
2441 2691 6.708054 ACGACTGTTTTTCTTTCTCTCATCAT 59.292 34.615 0.00 0.00 0.00 2.45
2442 2692 7.872993 ACGACTGTTTTTCTTTCTCTCATCATA 59.127 33.333 0.00 0.00 0.00 2.15
2443 2693 8.877779 CGACTGTTTTTCTTTCTCTCATCATAT 58.122 33.333 0.00 0.00 0.00 1.78
2445 2695 9.956640 ACTGTTTTTCTTTCTCTCATCATATCT 57.043 29.630 0.00 0.00 0.00 1.98
2447 2697 9.170734 TGTTTTTCTTTCTCTCATCATATCTGG 57.829 33.333 0.00 0.00 0.00 3.86
2448 2698 9.171877 GTTTTTCTTTCTCTCATCATATCTGGT 57.828 33.333 0.00 0.00 0.00 4.00
2449 2699 8.728337 TTTTCTTTCTCTCATCATATCTGGTG 57.272 34.615 0.00 0.00 34.60 4.17
2450 2700 5.851720 TCTTTCTCTCATCATATCTGGTGC 58.148 41.667 0.00 0.00 33.23 5.01
2451 2701 3.930634 TCTCTCATCATATCTGGTGCG 57.069 47.619 0.00 0.00 33.23 5.34
2452 2702 3.225940 TCTCTCATCATATCTGGTGCGT 58.774 45.455 0.00 0.00 33.23 5.24
2453 2703 3.254411 TCTCTCATCATATCTGGTGCGTC 59.746 47.826 0.00 0.00 33.23 5.19
2454 2704 2.030805 TCTCATCATATCTGGTGCGTCG 60.031 50.000 0.00 0.00 33.23 5.12
2455 2705 1.681264 TCATCATATCTGGTGCGTCGT 59.319 47.619 0.00 0.00 33.23 4.34
2456 2706 2.882137 TCATCATATCTGGTGCGTCGTA 59.118 45.455 0.00 0.00 33.23 3.43
2457 2707 2.768833 TCATATCTGGTGCGTCGTAC 57.231 50.000 4.73 4.73 0.00 3.67
2458 2708 2.294979 TCATATCTGGTGCGTCGTACT 58.705 47.619 13.25 0.00 0.00 2.73
2459 2709 2.289820 TCATATCTGGTGCGTCGTACTC 59.710 50.000 13.25 4.46 0.00 2.59
2460 2710 2.034104 TATCTGGTGCGTCGTACTCT 57.966 50.000 13.25 0.00 0.00 3.24
2461 2711 0.452184 ATCTGGTGCGTCGTACTCTG 59.548 55.000 13.25 7.70 0.00 3.35
2462 2712 1.801913 CTGGTGCGTCGTACTCTGC 60.802 63.158 13.25 0.00 0.00 4.26
2463 2713 2.506438 GGTGCGTCGTACTCTGCC 60.506 66.667 13.25 0.00 0.00 4.85
2464 2714 2.506438 GTGCGTCGTACTCTGCCC 60.506 66.667 6.19 0.00 0.00 5.36
2465 2715 2.675423 TGCGTCGTACTCTGCCCT 60.675 61.111 0.00 0.00 0.00 5.19
2466 2716 2.102553 GCGTCGTACTCTGCCCTC 59.897 66.667 0.00 0.00 0.00 4.30
2467 2717 2.799371 CGTCGTACTCTGCCCTCC 59.201 66.667 0.00 0.00 0.00 4.30
2468 2718 2.799371 GTCGTACTCTGCCCTCCG 59.201 66.667 0.00 0.00 0.00 4.63
2469 2719 2.045131 GTCGTACTCTGCCCTCCGT 61.045 63.158 0.00 0.00 0.00 4.69
2470 2720 1.303888 TCGTACTCTGCCCTCCGTT 60.304 57.895 0.00 0.00 0.00 4.44
2471 2721 0.035152 TCGTACTCTGCCCTCCGTTA 60.035 55.000 0.00 0.00 0.00 3.18
2472 2722 1.030457 CGTACTCTGCCCTCCGTTAT 58.970 55.000 0.00 0.00 0.00 1.89
2473 2723 1.001597 CGTACTCTGCCCTCCGTTATC 60.002 57.143 0.00 0.00 0.00 1.75
2474 2724 2.308690 GTACTCTGCCCTCCGTTATCT 58.691 52.381 0.00 0.00 0.00 1.98
2475 2725 1.867363 ACTCTGCCCTCCGTTATCTT 58.133 50.000 0.00 0.00 0.00 2.40
2476 2726 1.757699 ACTCTGCCCTCCGTTATCTTC 59.242 52.381 0.00 0.00 0.00 2.87
2477 2727 2.035632 CTCTGCCCTCCGTTATCTTCT 58.964 52.381 0.00 0.00 0.00 2.85
2478 2728 2.432510 CTCTGCCCTCCGTTATCTTCTT 59.567 50.000 0.00 0.00 0.00 2.52
2479 2729 2.431057 TCTGCCCTCCGTTATCTTCTTC 59.569 50.000 0.00 0.00 0.00 2.87
2480 2730 1.485066 TGCCCTCCGTTATCTTCTTCC 59.515 52.381 0.00 0.00 0.00 3.46
2481 2731 1.485066 GCCCTCCGTTATCTTCTTCCA 59.515 52.381 0.00 0.00 0.00 3.53
2482 2732 2.742204 GCCCTCCGTTATCTTCTTCCAC 60.742 54.545 0.00 0.00 0.00 4.02
2483 2733 2.481449 CCCTCCGTTATCTTCTTCCACG 60.481 54.545 0.00 0.00 0.00 4.94
2484 2734 2.194271 CTCCGTTATCTTCTTCCACGC 58.806 52.381 0.00 0.00 0.00 5.34
2485 2735 0.921347 CCGTTATCTTCTTCCACGCG 59.079 55.000 3.53 3.53 0.00 6.01
2486 2736 1.625616 CGTTATCTTCTTCCACGCGT 58.374 50.000 5.58 5.58 0.00 6.01
2487 2737 1.320555 CGTTATCTTCTTCCACGCGTG 59.679 52.381 31.77 31.77 0.00 5.34
2496 2746 3.403057 CCACGCGTGGTCGTCTTG 61.403 66.667 42.92 20.27 45.53 3.02
2497 2747 2.354188 CACGCGTGGTCGTCTTGA 60.354 61.111 31.15 0.00 41.21 3.02
2498 2748 1.947146 CACGCGTGGTCGTCTTGAA 60.947 57.895 31.15 0.00 41.21 2.69
2499 2749 1.660575 ACGCGTGGTCGTCTTGAAG 60.661 57.895 12.93 0.00 38.44 3.02
2500 2750 2.853914 GCGTGGTCGTCTTGAAGC 59.146 61.111 0.00 0.00 39.49 3.86
2501 2751 1.664965 GCGTGGTCGTCTTGAAGCT 60.665 57.895 0.00 0.00 39.49 3.74
2502 2752 1.618640 GCGTGGTCGTCTTGAAGCTC 61.619 60.000 0.00 0.00 39.49 4.09
2503 2753 1.009389 CGTGGTCGTCTTGAAGCTCC 61.009 60.000 0.00 0.00 0.00 4.70
2504 2754 0.318762 GTGGTCGTCTTGAAGCTCCT 59.681 55.000 0.00 0.00 0.00 3.69
2505 2755 1.048601 TGGTCGTCTTGAAGCTCCTT 58.951 50.000 0.00 0.00 0.00 3.36
2506 2756 1.000955 TGGTCGTCTTGAAGCTCCTTC 59.999 52.381 0.00 0.00 40.54 3.46
2507 2757 1.273886 GGTCGTCTTGAAGCTCCTTCT 59.726 52.381 6.54 0.00 40.73 2.85
2508 2758 2.601804 GTCGTCTTGAAGCTCCTTCTC 58.398 52.381 6.54 0.00 40.73 2.87
2509 2759 1.546476 TCGTCTTGAAGCTCCTTCTCC 59.454 52.381 6.54 0.00 40.73 3.71
2510 2760 1.273606 CGTCTTGAAGCTCCTTCTCCA 59.726 52.381 6.54 0.00 40.73 3.86
2511 2761 2.694213 GTCTTGAAGCTCCTTCTCCAC 58.306 52.381 6.54 0.00 40.73 4.02
2512 2762 2.037772 GTCTTGAAGCTCCTTCTCCACA 59.962 50.000 6.54 0.00 40.73 4.17
2513 2763 2.705658 TCTTGAAGCTCCTTCTCCACAA 59.294 45.455 6.54 0.00 40.73 3.33
2514 2764 3.136443 TCTTGAAGCTCCTTCTCCACAAA 59.864 43.478 6.54 0.00 40.73 2.83
2515 2765 2.851195 TGAAGCTCCTTCTCCACAAAC 58.149 47.619 6.54 0.00 40.73 2.93
2516 2766 2.155279 GAAGCTCCTTCTCCACAAACC 58.845 52.381 0.00 0.00 37.49 3.27
2517 2767 0.035458 AGCTCCTTCTCCACAAACCG 59.965 55.000 0.00 0.00 0.00 4.44
2518 2768 1.578206 GCTCCTTCTCCACAAACCGC 61.578 60.000 0.00 0.00 0.00 5.68
2519 2769 0.035458 CTCCTTCTCCACAAACCGCT 59.965 55.000 0.00 0.00 0.00 5.52
2520 2770 0.472471 TCCTTCTCCACAAACCGCTT 59.528 50.000 0.00 0.00 0.00 4.68
2521 2771 0.593128 CCTTCTCCACAAACCGCTTG 59.407 55.000 0.00 0.00 41.19 4.01
2523 2773 1.676006 CTTCTCCACAAACCGCTTGTT 59.324 47.619 0.00 0.00 46.49 2.83
2524 2774 1.021202 TCTCCACAAACCGCTTGTTG 58.979 50.000 0.00 0.00 46.49 3.33
2525 2775 1.021202 CTCCACAAACCGCTTGTTGA 58.979 50.000 0.00 1.46 46.49 3.18
2526 2776 1.403679 CTCCACAAACCGCTTGTTGAA 59.596 47.619 0.00 0.00 46.49 2.69
2527 2777 1.819288 TCCACAAACCGCTTGTTGAAA 59.181 42.857 0.00 0.00 46.49 2.69
2528 2778 2.428890 TCCACAAACCGCTTGTTGAAAT 59.571 40.909 0.00 0.00 46.49 2.17
2529 2779 2.539274 CCACAAACCGCTTGTTGAAATG 59.461 45.455 0.00 0.00 46.49 2.32
2530 2780 2.033832 CACAAACCGCTTGTTGAAATGC 60.034 45.455 0.00 0.00 46.49 3.56
2531 2781 2.159114 ACAAACCGCTTGTTGAAATGCT 60.159 40.909 0.00 0.00 46.49 3.79
2532 2782 2.422276 AACCGCTTGTTGAAATGCTC 57.578 45.000 0.00 0.00 35.31 4.26
2533 2783 0.598065 ACCGCTTGTTGAAATGCTCC 59.402 50.000 0.00 0.00 0.00 4.70
2534 2784 0.454957 CCGCTTGTTGAAATGCTCCG 60.455 55.000 0.00 0.00 0.00 4.63
2535 2785 0.516877 CGCTTGTTGAAATGCTCCGA 59.483 50.000 0.00 0.00 0.00 4.55
2536 2786 1.725931 CGCTTGTTGAAATGCTCCGAC 60.726 52.381 0.00 0.00 0.00 4.79
2537 2787 1.266718 GCTTGTTGAAATGCTCCGACA 59.733 47.619 0.00 0.00 0.00 4.35
2538 2788 2.095059 GCTTGTTGAAATGCTCCGACAT 60.095 45.455 0.00 0.00 0.00 3.06
2539 2789 3.495193 CTTGTTGAAATGCTCCGACATG 58.505 45.455 0.00 0.00 0.00 3.21
2540 2790 1.811965 TGTTGAAATGCTCCGACATGG 59.188 47.619 0.00 0.00 40.09 3.66
2541 2791 1.133025 GTTGAAATGCTCCGACATGGG 59.867 52.381 0.00 0.00 38.76 4.00
2542 2792 0.394216 TGAAATGCTCCGACATGGGG 60.394 55.000 0.00 0.00 43.42 4.96
2543 2793 1.076777 AAATGCTCCGACATGGGGG 60.077 57.895 0.00 0.00 39.40 5.40
2544 2794 1.863155 AAATGCTCCGACATGGGGGT 61.863 55.000 0.00 0.00 39.40 4.95
2545 2795 2.556840 AATGCTCCGACATGGGGGTG 62.557 60.000 0.00 0.00 39.40 4.61
2546 2796 4.489771 GCTCCGACATGGGGGTGG 62.490 72.222 0.00 0.00 39.40 4.61
2547 2797 3.797353 CTCCGACATGGGGGTGGG 61.797 72.222 0.00 0.00 37.94 4.61
2548 2798 4.340489 TCCGACATGGGGGTGGGA 62.340 66.667 0.00 0.00 42.46 4.37
2549 2799 3.334891 CCGACATGGGGGTGGGAA 61.335 66.667 0.00 0.00 38.79 3.97
2550 2800 2.760477 CGACATGGGGGTGGGAAA 59.240 61.111 0.00 0.00 0.00 3.13
2551 2801 1.075836 CGACATGGGGGTGGGAAAA 59.924 57.895 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
315 319 6.375455 CCACATATTTTTAGTCAGAGCCAAGT 59.625 38.462 0.00 0.00 0.00 3.16
316 320 6.183360 CCCACATATTTTTAGTCAGAGCCAAG 60.183 42.308 0.00 0.00 0.00 3.61
475 479 2.026262 AGGCCATAGTTGTTTCGACCAT 60.026 45.455 5.01 0.00 0.00 3.55
493 497 3.426568 GCACAGCGACCTTCAGGC 61.427 66.667 0.00 0.00 39.32 4.85
522 526 0.468029 CTGGTTGTGGTTGCCTCCTT 60.468 55.000 0.00 0.00 0.00 3.36
618 627 2.204463 TCATGTTTGGCCCCTGAGATA 58.796 47.619 0.00 0.00 0.00 1.98
625 634 3.152341 CTCATAGATCATGTTTGGCCCC 58.848 50.000 0.00 0.00 35.96 5.80
639 648 3.054287 AGGAGGTCTGACGTTCTCATAGA 60.054 47.826 5.49 0.00 0.00 1.98
641 650 3.280295 GAGGAGGTCTGACGTTCTCATA 58.720 50.000 26.14 0.00 38.24 2.15
684 693 4.974368 TGTGTTCATCAAAACGGTCTTT 57.026 36.364 0.00 0.00 31.58 2.52
714 723 2.846039 TTACGAGAAGCATCGGAGAC 57.154 50.000 10.18 0.00 46.91 3.36
742 752 4.838046 TGCGTCACAACGGAAGAA 57.162 50.000 0.00 0.00 46.74 2.52
753 763 3.043340 CACATATGTCCGTGCGTCA 57.957 52.632 5.07 0.00 0.00 4.35
763 773 6.127703 ACGTTACAAGAGACTAGCACATATGT 60.128 38.462 1.41 1.41 0.00 2.29
793 803 4.479993 ATGCGGGGCTGCTCTGTC 62.480 66.667 10.55 3.08 35.36 3.51
991 1001 1.563435 GCCATCGACATGCCGATCTG 61.563 60.000 14.38 9.66 46.26 2.90
1282 1525 3.264897 CGCCTCCGCCTTGAATCG 61.265 66.667 0.00 0.00 0.00 3.34
1588 1835 3.181461 CCTATGCAGCAGCTAACTACCTT 60.181 47.826 0.00 0.00 42.74 3.50
1692 1940 6.413269 CAATTGAAGCAAGCTAACACAAAAC 58.587 36.000 0.00 0.00 0.00 2.43
1719 1967 2.249535 ATGCACGCAGATCATCGGC 61.250 57.895 0.00 0.00 34.21 5.54
1721 1969 1.568025 CCATGCACGCAGATCATCG 59.432 57.895 0.00 0.00 0.00 3.84
1731 1979 3.065786 ACAATTCATAGAAGCCATGCACG 59.934 43.478 0.00 0.00 0.00 5.34
1762 2011 2.877168 CCTATCAGCAATGCAAGAGTCC 59.123 50.000 8.35 0.00 0.00 3.85
1776 2026 1.879575 TGGGGGACTTCACCTATCAG 58.120 55.000 0.00 0.00 40.05 2.90
1790 2040 5.650703 ACTTACTTACGAAATGATTTGGGGG 59.349 40.000 4.97 0.00 0.00 5.40
1801 2051 8.949177 GGGGAAAATATGAACTTACTTACGAAA 58.051 33.333 0.00 0.00 0.00 3.46
1840 2090 7.781548 ACGGGTACATCAAATATGAACTTAC 57.218 36.000 0.00 0.00 39.49 2.34
1874 2124 1.074889 TGCAACTAGGAAAAGGGGGAC 59.925 52.381 0.00 0.00 0.00 4.46
1875 2125 1.354368 CTGCAACTAGGAAAAGGGGGA 59.646 52.381 0.00 0.00 0.00 4.81
1932 2182 6.719370 TCCTGTAAATTAGCACCAAAAGATGT 59.281 34.615 0.00 0.00 0.00 3.06
1938 2188 5.621104 CGCAATCCTGTAAATTAGCACCAAA 60.621 40.000 0.00 0.00 0.00 3.28
1953 2203 2.086869 ACCATTTGTCTCGCAATCCTG 58.913 47.619 0.00 0.00 36.89 3.86
1993 2243 2.119801 ACAGTGCTCCAATTGCCTAG 57.880 50.000 0.00 0.00 0.00 3.02
2025 2275 6.751514 TGCAATACAATTACTAGGTGGTTG 57.248 37.500 0.00 0.00 0.00 3.77
2059 2309 4.321452 CCATCCACAATTTTCACACCTGAG 60.321 45.833 0.00 0.00 0.00 3.35
2061 2311 3.573538 TCCATCCACAATTTTCACACCTG 59.426 43.478 0.00 0.00 0.00 4.00
2072 2322 4.722220 CATACAGGTCATCCATCCACAAT 58.278 43.478 0.00 0.00 35.89 2.71
2113 2363 7.016153 AGTATTCACCACTGAAGGAATTGTA 57.984 36.000 0.00 0.00 39.83 2.41
2124 2374 9.559958 GATTGAAAAATGTAGTATTCACCACTG 57.440 33.333 0.00 0.00 31.96 3.66
2129 2379 9.520204 CATGGGATTGAAAAATGTAGTATTCAC 57.480 33.333 0.00 0.00 31.96 3.18
2156 2406 0.678395 CATATCTGGCCACTCTCGCT 59.322 55.000 0.00 0.00 0.00 4.93
2206 2456 2.259266 TTGGTGGGGTTCGTCTTTAC 57.741 50.000 0.00 0.00 0.00 2.01
2207 2457 4.637387 TTATTGGTGGGGTTCGTCTTTA 57.363 40.909 0.00 0.00 0.00 1.85
2208 2458 3.512219 TTATTGGTGGGGTTCGTCTTT 57.488 42.857 0.00 0.00 0.00 2.52
2209 2459 3.009695 TGATTATTGGTGGGGTTCGTCTT 59.990 43.478 0.00 0.00 0.00 3.01
2213 2463 5.592688 AGTTAATGATTATTGGTGGGGTTCG 59.407 40.000 0.00 0.00 0.00 3.95
2236 2486 1.976045 GTGAACGCGGCAAAATAACAG 59.024 47.619 12.47 0.00 0.00 3.16
2242 2492 0.665835 AAGATGTGAACGCGGCAAAA 59.334 45.000 12.47 0.59 0.00 2.44
2243 2493 0.237235 GAAGATGTGAACGCGGCAAA 59.763 50.000 12.47 3.39 0.00 3.68
2244 2494 1.573829 GGAAGATGTGAACGCGGCAA 61.574 55.000 12.47 0.07 0.00 4.52
2245 2495 2.032634 GGAAGATGTGAACGCGGCA 61.033 57.895 12.47 5.25 0.00 5.69
2246 2496 2.032634 TGGAAGATGTGAACGCGGC 61.033 57.895 12.47 1.95 0.00 6.53
2247 2497 1.787847 GTGGAAGATGTGAACGCGG 59.212 57.895 12.47 0.00 0.00 6.46
2248 2498 1.282248 ACGTGGAAGATGTGAACGCG 61.282 55.000 3.53 3.53 37.76 6.01
2249 2499 0.438830 GACGTGGAAGATGTGAACGC 59.561 55.000 0.00 0.00 37.76 4.84
2250 2500 1.455786 GTGACGTGGAAGATGTGAACG 59.544 52.381 0.00 0.00 40.00 3.95
2251 2501 2.755650 AGTGACGTGGAAGATGTGAAC 58.244 47.619 0.00 0.00 0.00 3.18
2252 2502 3.469008 AAGTGACGTGGAAGATGTGAA 57.531 42.857 0.00 0.00 0.00 3.18
2253 2503 3.469008 AAAGTGACGTGGAAGATGTGA 57.531 42.857 0.00 0.00 0.00 3.58
2254 2504 5.862924 ATTAAAGTGACGTGGAAGATGTG 57.137 39.130 0.00 0.00 0.00 3.21
2255 2505 7.065803 CCATAATTAAAGTGACGTGGAAGATGT 59.934 37.037 0.00 0.00 0.00 3.06
2256 2506 7.279981 TCCATAATTAAAGTGACGTGGAAGATG 59.720 37.037 0.00 0.00 32.02 2.90
2257 2507 7.335627 TCCATAATTAAAGTGACGTGGAAGAT 58.664 34.615 0.00 0.00 32.02 2.40
2258 2508 6.703319 TCCATAATTAAAGTGACGTGGAAGA 58.297 36.000 0.00 0.00 32.02 2.87
2259 2509 6.816640 TCTCCATAATTAAAGTGACGTGGAAG 59.183 38.462 0.00 0.00 34.42 3.46
2260 2510 6.703319 TCTCCATAATTAAAGTGACGTGGAA 58.297 36.000 0.00 0.00 34.42 3.53
2261 2511 6.288941 TCTCCATAATTAAAGTGACGTGGA 57.711 37.500 0.00 0.00 33.77 4.02
2262 2512 6.455113 CGTTCTCCATAATTAAAGTGACGTGG 60.455 42.308 0.00 0.00 0.00 4.94
2263 2513 6.090358 ACGTTCTCCATAATTAAAGTGACGTG 59.910 38.462 17.79 2.47 0.00 4.49
2264 2514 6.161381 ACGTTCTCCATAATTAAAGTGACGT 58.839 36.000 15.46 15.46 0.00 4.34
2265 2515 6.642683 ACGTTCTCCATAATTAAAGTGACG 57.357 37.500 14.74 14.74 0.00 4.35
2266 2516 6.741358 GCAACGTTCTCCATAATTAAAGTGAC 59.259 38.462 0.00 0.00 0.00 3.67
2267 2517 6.401688 CGCAACGTTCTCCATAATTAAAGTGA 60.402 38.462 0.00 0.00 0.00 3.41
2268 2518 5.732647 CGCAACGTTCTCCATAATTAAAGTG 59.267 40.000 0.00 0.00 0.00 3.16
2269 2519 5.410439 ACGCAACGTTCTCCATAATTAAAGT 59.590 36.000 0.00 0.00 36.35 2.66
2270 2520 5.864986 ACGCAACGTTCTCCATAATTAAAG 58.135 37.500 0.00 0.00 36.35 1.85
2271 2521 5.866335 ACGCAACGTTCTCCATAATTAAA 57.134 34.783 0.00 0.00 36.35 1.52
2272 2522 6.035220 CAGTACGCAACGTTCTCCATAATTAA 59.965 38.462 0.00 0.00 41.54 1.40
2273 2523 5.517411 CAGTACGCAACGTTCTCCATAATTA 59.483 40.000 0.00 0.00 41.54 1.40
2274 2524 4.328983 CAGTACGCAACGTTCTCCATAATT 59.671 41.667 0.00 0.00 41.54 1.40
2275 2525 3.863424 CAGTACGCAACGTTCTCCATAAT 59.137 43.478 0.00 0.00 41.54 1.28
2276 2526 3.057386 TCAGTACGCAACGTTCTCCATAA 60.057 43.478 0.00 0.00 41.54 1.90
2277 2527 2.488937 TCAGTACGCAACGTTCTCCATA 59.511 45.455 0.00 0.00 41.54 2.74
2278 2528 1.271379 TCAGTACGCAACGTTCTCCAT 59.729 47.619 0.00 0.00 41.54 3.41
2279 2529 0.669619 TCAGTACGCAACGTTCTCCA 59.330 50.000 0.00 0.00 41.54 3.86
2280 2530 1.058404 GTCAGTACGCAACGTTCTCC 58.942 55.000 0.00 0.00 41.54 3.71
2281 2531 0.701303 CGTCAGTACGCAACGTTCTC 59.299 55.000 0.00 0.00 43.12 2.87
2282 2532 2.792374 CGTCAGTACGCAACGTTCT 58.208 52.632 0.00 0.00 43.12 3.01
2304 2554 4.880537 ATCGAGCAGCTTCGGCCG 62.881 66.667 22.12 22.12 43.01 6.13
2305 2555 2.964389 GATCGAGCAGCTTCGGCC 60.964 66.667 7.90 0.00 43.01 6.13
2306 2556 3.326210 CGATCGAGCAGCTTCGGC 61.326 66.667 10.26 0.00 40.83 5.54
2307 2557 3.326210 GCGATCGAGCAGCTTCGG 61.326 66.667 21.57 0.57 40.83 4.30
2308 2558 3.676348 CGCGATCGAGCAGCTTCG 61.676 66.667 21.57 10.15 41.79 3.79
2309 2559 1.806251 CTTCGCGATCGAGCAGCTTC 61.806 60.000 21.57 0.00 46.34 3.86
2310 2560 1.875813 CTTCGCGATCGAGCAGCTT 60.876 57.895 21.57 0.00 46.34 3.74
2311 2561 2.278466 CTTCGCGATCGAGCAGCT 60.278 61.111 21.57 0.00 46.34 4.24
2312 2562 3.326210 CCTTCGCGATCGAGCAGC 61.326 66.667 21.57 4.40 46.34 5.25
2313 2563 2.413437 ATCCCTTCGCGATCGAGCAG 62.413 60.000 21.57 15.80 46.34 4.24
2314 2564 2.407846 GATCCCTTCGCGATCGAGCA 62.408 60.000 21.57 4.88 46.34 4.26
2315 2565 1.731257 GATCCCTTCGCGATCGAGC 60.731 63.158 21.57 4.75 46.34 5.03
2316 2566 1.129624 CTAGATCCCTTCGCGATCGAG 59.870 57.143 21.57 17.16 46.34 4.04
2317 2567 1.157585 CTAGATCCCTTCGCGATCGA 58.842 55.000 21.57 6.16 40.91 3.59
2318 2568 0.455295 GCTAGATCCCTTCGCGATCG 60.455 60.000 10.88 11.69 40.91 3.69
2319 2569 0.455295 CGCTAGATCCCTTCGCGATC 60.455 60.000 10.88 3.62 40.88 3.69
2320 2570 1.581954 CGCTAGATCCCTTCGCGAT 59.418 57.895 10.88 0.00 40.88 4.58
2321 2571 3.031495 CGCTAGATCCCTTCGCGA 58.969 61.111 3.71 3.71 40.88 5.87
2322 2572 1.853114 TAGCGCTAGATCCCTTCGCG 61.853 60.000 14.45 0.00 43.20 5.87
2323 2573 0.387494 GTAGCGCTAGATCCCTTCGC 60.387 60.000 19.48 10.10 40.76 4.70
2324 2574 0.110147 CGTAGCGCTAGATCCCTTCG 60.110 60.000 19.48 11.39 0.00 3.79
2325 2575 1.236628 TCGTAGCGCTAGATCCCTTC 58.763 55.000 19.48 2.06 0.00 3.46
2326 2576 1.542030 CATCGTAGCGCTAGATCCCTT 59.458 52.381 19.48 0.00 0.00 3.95
2327 2577 1.169577 CATCGTAGCGCTAGATCCCT 58.830 55.000 19.48 0.03 0.00 4.20
2328 2578 0.882474 ACATCGTAGCGCTAGATCCC 59.118 55.000 19.48 4.49 0.00 3.85
2329 2579 1.807742 AGACATCGTAGCGCTAGATCC 59.192 52.381 19.48 14.72 0.00 3.36
2330 2580 2.159626 GGAGACATCGTAGCGCTAGATC 60.160 54.545 19.48 12.14 0.00 2.75
2331 2581 1.807742 GGAGACATCGTAGCGCTAGAT 59.192 52.381 19.48 18.55 0.00 1.98
2332 2582 1.227639 GGAGACATCGTAGCGCTAGA 58.772 55.000 19.48 17.12 0.00 2.43
2333 2583 0.238817 GGGAGACATCGTAGCGCTAG 59.761 60.000 19.48 12.19 0.00 3.42
2334 2584 1.504647 CGGGAGACATCGTAGCGCTA 61.505 60.000 14.45 14.45 0.00 4.26
2335 2585 2.835705 CGGGAGACATCGTAGCGCT 61.836 63.158 17.26 17.26 0.00 5.92
2336 2586 2.131294 ATCGGGAGACATCGTAGCGC 62.131 60.000 0.00 0.00 44.82 5.92
2337 2587 1.136029 GTATCGGGAGACATCGTAGCG 60.136 57.143 0.00 0.00 44.82 4.26
2338 2588 1.878088 TGTATCGGGAGACATCGTAGC 59.122 52.381 0.00 0.00 44.82 3.58
2339 2589 2.096367 CGTGTATCGGGAGACATCGTAG 60.096 54.545 0.00 0.00 44.82 3.51
2340 2590 1.869132 CGTGTATCGGGAGACATCGTA 59.131 52.381 0.00 0.00 44.82 3.43
2341 2591 0.661552 CGTGTATCGGGAGACATCGT 59.338 55.000 0.00 0.00 44.82 3.73
2342 2592 0.661552 ACGTGTATCGGGAGACATCG 59.338 55.000 13.02 13.02 44.82 3.84
2343 2593 2.865343 AACGTGTATCGGGAGACATC 57.135 50.000 0.00 0.00 44.82 3.06
2344 2594 3.518590 GAAAACGTGTATCGGGAGACAT 58.481 45.455 0.00 0.00 44.82 3.06
2345 2595 2.353011 GGAAAACGTGTATCGGGAGACA 60.353 50.000 0.00 0.00 44.82 3.41
2346 2596 2.265683 GGAAAACGTGTATCGGGAGAC 58.734 52.381 0.00 0.00 44.82 3.36
2347 2597 1.894466 TGGAAAACGTGTATCGGGAGA 59.106 47.619 0.00 0.00 44.69 3.71
2348 2598 2.373540 TGGAAAACGTGTATCGGGAG 57.626 50.000 0.00 0.00 44.69 4.30
2349 2599 3.004171 CAATGGAAAACGTGTATCGGGA 58.996 45.455 0.00 0.00 44.69 5.14
2350 2600 2.745281 ACAATGGAAAACGTGTATCGGG 59.255 45.455 0.00 0.00 44.69 5.14
2351 2601 4.413495 AACAATGGAAAACGTGTATCGG 57.587 40.909 0.00 0.00 44.69 4.18
2352 2602 5.209240 ACAAACAATGGAAAACGTGTATCG 58.791 37.500 0.00 0.00 46.00 2.92
2353 2603 7.458038 AAACAAACAATGGAAAACGTGTATC 57.542 32.000 0.00 0.00 0.00 2.24
2354 2604 7.835634 AAAACAAACAATGGAAAACGTGTAT 57.164 28.000 0.00 0.00 0.00 2.29
2355 2605 7.148623 GGAAAAACAAACAATGGAAAACGTGTA 60.149 33.333 0.00 0.00 0.00 2.90
2356 2606 6.347806 GGAAAAACAAACAATGGAAAACGTGT 60.348 34.615 0.00 0.00 0.00 4.49
2357 2607 6.018542 GGAAAAACAAACAATGGAAAACGTG 58.981 36.000 0.00 0.00 0.00 4.49
2358 2608 5.935206 AGGAAAAACAAACAATGGAAAACGT 59.065 32.000 0.00 0.00 0.00 3.99
2359 2609 6.415798 AGGAAAAACAAACAATGGAAAACG 57.584 33.333 0.00 0.00 0.00 3.60
2360 2610 7.753132 GGAAAGGAAAAACAAACAATGGAAAAC 59.247 33.333 0.00 0.00 0.00 2.43
2361 2611 7.667635 AGGAAAGGAAAAACAAACAATGGAAAA 59.332 29.630 0.00 0.00 0.00 2.29
2362 2612 7.171653 AGGAAAGGAAAAACAAACAATGGAAA 58.828 30.769 0.00 0.00 0.00 3.13
2363 2613 6.716284 AGGAAAGGAAAAACAAACAATGGAA 58.284 32.000 0.00 0.00 0.00 3.53
2364 2614 6.306643 AGGAAAGGAAAAACAAACAATGGA 57.693 33.333 0.00 0.00 0.00 3.41
2365 2615 5.234116 CGAGGAAAGGAAAAACAAACAATGG 59.766 40.000 0.00 0.00 0.00 3.16
2366 2616 5.234116 CCGAGGAAAGGAAAAACAAACAATG 59.766 40.000 0.00 0.00 0.00 2.82
2367 2617 5.356426 CCGAGGAAAGGAAAAACAAACAAT 58.644 37.500 0.00 0.00 0.00 2.71
2368 2618 4.749976 CCGAGGAAAGGAAAAACAAACAA 58.250 39.130 0.00 0.00 0.00 2.83
2369 2619 3.429684 GCCGAGGAAAGGAAAAACAAACA 60.430 43.478 0.00 0.00 0.00 2.83
2370 2620 3.120792 GCCGAGGAAAGGAAAAACAAAC 58.879 45.455 0.00 0.00 0.00 2.93
2371 2621 2.101750 GGCCGAGGAAAGGAAAAACAAA 59.898 45.455 0.00 0.00 0.00 2.83
2372 2622 1.684450 GGCCGAGGAAAGGAAAAACAA 59.316 47.619 0.00 0.00 0.00 2.83
2373 2623 1.324383 GGCCGAGGAAAGGAAAAACA 58.676 50.000 0.00 0.00 0.00 2.83
2374 2624 0.601558 GGGCCGAGGAAAGGAAAAAC 59.398 55.000 0.00 0.00 0.00 2.43
2375 2625 0.891904 CGGGCCGAGGAAAGGAAAAA 60.892 55.000 24.41 0.00 0.00 1.94
2376 2626 1.302993 CGGGCCGAGGAAAGGAAAA 60.303 57.895 24.41 0.00 0.00 2.29
2377 2627 2.349755 CGGGCCGAGGAAAGGAAA 59.650 61.111 24.41 0.00 0.00 3.13
2378 2628 4.404098 GCGGGCCGAGGAAAGGAA 62.404 66.667 33.44 0.00 0.00 3.36
2403 2653 1.762460 AGTCGTGATGGGCCTAGGG 60.762 63.158 11.72 0.00 0.00 3.53
2404 2654 1.330655 ACAGTCGTGATGGGCCTAGG 61.331 60.000 3.67 3.67 0.00 3.02
2405 2655 0.537188 AACAGTCGTGATGGGCCTAG 59.463 55.000 4.53 0.00 0.00 3.02
2406 2656 0.981183 AAACAGTCGTGATGGGCCTA 59.019 50.000 4.53 0.00 0.00 3.93
2407 2657 0.110486 AAAACAGTCGTGATGGGCCT 59.890 50.000 4.53 0.00 0.00 5.19
2408 2658 0.958822 AAAAACAGTCGTGATGGGCC 59.041 50.000 0.00 0.00 0.00 5.80
2409 2659 1.880027 AGAAAAACAGTCGTGATGGGC 59.120 47.619 0.00 0.00 0.00 5.36
2410 2660 4.275936 AGAAAGAAAAACAGTCGTGATGGG 59.724 41.667 0.00 0.00 0.00 4.00
2411 2661 5.237344 AGAGAAAGAAAAACAGTCGTGATGG 59.763 40.000 0.00 0.00 0.00 3.51
2412 2662 6.018751 TGAGAGAAAGAAAAACAGTCGTGATG 60.019 38.462 0.00 0.00 0.00 3.07
2413 2663 6.049149 TGAGAGAAAGAAAAACAGTCGTGAT 58.951 36.000 0.00 0.00 0.00 3.06
2414 2664 5.416083 TGAGAGAAAGAAAAACAGTCGTGA 58.584 37.500 0.00 0.00 0.00 4.35
2415 2665 5.718649 TGAGAGAAAGAAAAACAGTCGTG 57.281 39.130 0.00 0.00 0.00 4.35
2416 2666 6.049149 TGATGAGAGAAAGAAAAACAGTCGT 58.951 36.000 0.00 0.00 0.00 4.34
2417 2667 6.530913 TGATGAGAGAAAGAAAAACAGTCG 57.469 37.500 0.00 0.00 0.00 4.18
2419 2669 9.956640 AGATATGATGAGAGAAAGAAAAACAGT 57.043 29.630 0.00 0.00 0.00 3.55
2421 2671 9.170734 CCAGATATGATGAGAGAAAGAAAAACA 57.829 33.333 0.00 0.00 0.00 2.83
2422 2672 9.171877 ACCAGATATGATGAGAGAAAGAAAAAC 57.828 33.333 0.00 0.00 0.00 2.43
2423 2673 9.170734 CACCAGATATGATGAGAGAAAGAAAAA 57.829 33.333 0.00 0.00 0.00 1.94
2424 2674 7.281774 GCACCAGATATGATGAGAGAAAGAAAA 59.718 37.037 0.00 0.00 0.00 2.29
2425 2675 6.765036 GCACCAGATATGATGAGAGAAAGAAA 59.235 38.462 0.00 0.00 0.00 2.52
2426 2676 6.286758 GCACCAGATATGATGAGAGAAAGAA 58.713 40.000 0.00 0.00 0.00 2.52
2427 2677 5.508657 CGCACCAGATATGATGAGAGAAAGA 60.509 44.000 0.00 0.00 0.00 2.52
2428 2678 4.685165 CGCACCAGATATGATGAGAGAAAG 59.315 45.833 0.00 0.00 0.00 2.62
2429 2679 4.100035 ACGCACCAGATATGATGAGAGAAA 59.900 41.667 0.00 0.00 0.00 2.52
2430 2680 3.638627 ACGCACCAGATATGATGAGAGAA 59.361 43.478 0.00 0.00 0.00 2.87
2431 2681 3.225940 ACGCACCAGATATGATGAGAGA 58.774 45.455 0.00 0.00 0.00 3.10
2432 2682 3.573598 GACGCACCAGATATGATGAGAG 58.426 50.000 0.00 0.00 0.00 3.20
2433 2683 2.030805 CGACGCACCAGATATGATGAGA 60.031 50.000 0.00 0.00 0.00 3.27
2434 2684 2.287849 ACGACGCACCAGATATGATGAG 60.288 50.000 0.00 0.00 0.00 2.90
2435 2685 1.681264 ACGACGCACCAGATATGATGA 59.319 47.619 0.00 0.00 0.00 2.92
2436 2686 2.140065 ACGACGCACCAGATATGATG 57.860 50.000 0.00 0.00 0.00 3.07
2437 2687 2.885266 AGTACGACGCACCAGATATGAT 59.115 45.455 0.00 0.00 0.00 2.45
2438 2688 2.289820 GAGTACGACGCACCAGATATGA 59.710 50.000 0.00 0.00 0.00 2.15
2439 2689 2.290916 AGAGTACGACGCACCAGATATG 59.709 50.000 0.00 0.00 0.00 1.78
2440 2690 2.290916 CAGAGTACGACGCACCAGATAT 59.709 50.000 0.00 0.00 0.00 1.63
2441 2691 1.669265 CAGAGTACGACGCACCAGATA 59.331 52.381 0.00 0.00 0.00 1.98
2442 2692 0.452184 CAGAGTACGACGCACCAGAT 59.548 55.000 0.00 0.00 0.00 2.90
2443 2693 1.873863 CAGAGTACGACGCACCAGA 59.126 57.895 0.00 0.00 0.00 3.86
2444 2694 1.801913 GCAGAGTACGACGCACCAG 60.802 63.158 0.00 0.00 0.00 4.00
2445 2695 2.257371 GCAGAGTACGACGCACCA 59.743 61.111 0.00 0.00 0.00 4.17
2446 2696 2.506438 GGCAGAGTACGACGCACC 60.506 66.667 0.00 0.00 0.00 5.01
2447 2697 2.506438 GGGCAGAGTACGACGCAC 60.506 66.667 0.00 0.00 0.00 5.34
2448 2698 2.675423 AGGGCAGAGTACGACGCA 60.675 61.111 0.00 0.00 0.00 5.24
2449 2699 2.102553 GAGGGCAGAGTACGACGC 59.897 66.667 0.00 0.00 0.00 5.19
2450 2700 2.799371 GGAGGGCAGAGTACGACG 59.201 66.667 0.00 0.00 0.00 5.12
2451 2701 1.593296 AACGGAGGGCAGAGTACGAC 61.593 60.000 0.00 0.00 0.00 4.34
2452 2702 0.035152 TAACGGAGGGCAGAGTACGA 60.035 55.000 0.00 0.00 0.00 3.43
2453 2703 1.001597 GATAACGGAGGGCAGAGTACG 60.002 57.143 0.00 0.00 0.00 3.67
2454 2704 2.308690 AGATAACGGAGGGCAGAGTAC 58.691 52.381 0.00 0.00 0.00 2.73
2455 2705 2.750141 AGATAACGGAGGGCAGAGTA 57.250 50.000 0.00 0.00 0.00 2.59
2456 2706 1.757699 GAAGATAACGGAGGGCAGAGT 59.242 52.381 0.00 0.00 0.00 3.24
2457 2707 2.035632 AGAAGATAACGGAGGGCAGAG 58.964 52.381 0.00 0.00 0.00 3.35
2458 2708 2.160721 AGAAGATAACGGAGGGCAGA 57.839 50.000 0.00 0.00 0.00 4.26
2459 2709 2.483889 GGAAGAAGATAACGGAGGGCAG 60.484 54.545 0.00 0.00 0.00 4.85
2460 2710 1.485066 GGAAGAAGATAACGGAGGGCA 59.515 52.381 0.00 0.00 0.00 5.36
2461 2711 1.485066 TGGAAGAAGATAACGGAGGGC 59.515 52.381 0.00 0.00 0.00 5.19
2462 2712 2.481449 CGTGGAAGAAGATAACGGAGGG 60.481 54.545 0.00 0.00 0.00 4.30
2463 2713 2.810650 CGTGGAAGAAGATAACGGAGG 58.189 52.381 0.00 0.00 0.00 4.30
2464 2714 2.194271 GCGTGGAAGAAGATAACGGAG 58.806 52.381 0.00 0.00 34.91 4.63
2465 2715 1.468565 CGCGTGGAAGAAGATAACGGA 60.469 52.381 0.00 0.00 34.91 4.69
2466 2716 0.921347 CGCGTGGAAGAAGATAACGG 59.079 55.000 0.00 0.00 34.91 4.44
2467 2717 1.320555 CACGCGTGGAAGAAGATAACG 59.679 52.381 31.15 0.00 37.32 3.18
2480 2730 1.876453 CTTCAAGACGACCACGCGTG 61.876 60.000 31.77 31.77 45.72 5.34
2482 2732 3.000080 GCTTCAAGACGACCACGCG 62.000 63.158 3.53 3.53 43.96 6.01
2483 2733 1.618640 GAGCTTCAAGACGACCACGC 61.619 60.000 0.00 0.00 43.96 5.34
2484 2734 1.009389 GGAGCTTCAAGACGACCACG 61.009 60.000 0.00 0.00 45.75 4.94
2485 2735 0.318762 AGGAGCTTCAAGACGACCAC 59.681 55.000 0.00 0.00 0.00 4.16
2486 2736 1.000955 GAAGGAGCTTCAAGACGACCA 59.999 52.381 0.00 0.00 39.95 4.02
2487 2737 1.273886 AGAAGGAGCTTCAAGACGACC 59.726 52.381 0.00 0.00 42.37 4.79
2488 2738 2.601804 GAGAAGGAGCTTCAAGACGAC 58.398 52.381 0.00 0.00 42.37 4.34
2489 2739 1.546476 GGAGAAGGAGCTTCAAGACGA 59.454 52.381 0.00 0.00 42.37 4.20
2490 2740 1.273606 TGGAGAAGGAGCTTCAAGACG 59.726 52.381 0.00 0.00 42.37 4.18
2491 2741 2.037772 TGTGGAGAAGGAGCTTCAAGAC 59.962 50.000 0.00 0.00 42.37 3.01
2492 2742 2.329267 TGTGGAGAAGGAGCTTCAAGA 58.671 47.619 0.00 0.00 42.37 3.02
2493 2743 2.847327 TGTGGAGAAGGAGCTTCAAG 57.153 50.000 0.00 0.00 42.37 3.02
2494 2744 3.214328 GTTTGTGGAGAAGGAGCTTCAA 58.786 45.455 0.00 0.00 42.37 2.69
2495 2745 2.487265 GGTTTGTGGAGAAGGAGCTTCA 60.487 50.000 0.00 0.00 42.37 3.02
2496 2746 2.155279 GGTTTGTGGAGAAGGAGCTTC 58.845 52.381 0.00 0.00 40.45 3.86
2497 2747 1.543429 CGGTTTGTGGAGAAGGAGCTT 60.543 52.381 0.00 0.00 0.00 3.74
2498 2748 0.035458 CGGTTTGTGGAGAAGGAGCT 59.965 55.000 0.00 0.00 0.00 4.09
2499 2749 1.578206 GCGGTTTGTGGAGAAGGAGC 61.578 60.000 0.00 0.00 0.00 4.70
2500 2750 0.035458 AGCGGTTTGTGGAGAAGGAG 59.965 55.000 0.00 0.00 0.00 3.69
2501 2751 0.472471 AAGCGGTTTGTGGAGAAGGA 59.528 50.000 0.00 0.00 0.00 3.36
2502 2752 0.593128 CAAGCGGTTTGTGGAGAAGG 59.407 55.000 0.00 0.00 31.92 3.46
2511 2761 2.472488 GAGCATTTCAACAAGCGGTTTG 59.528 45.455 0.00 2.84 37.72 2.93
2512 2762 2.545742 GGAGCATTTCAACAAGCGGTTT 60.546 45.455 0.00 0.00 37.72 3.27
2513 2763 1.000274 GGAGCATTTCAACAAGCGGTT 60.000 47.619 0.00 0.00 41.47 4.44
2514 2764 0.598065 GGAGCATTTCAACAAGCGGT 59.402 50.000 0.00 0.00 0.00 5.68
2515 2765 0.454957 CGGAGCATTTCAACAAGCGG 60.455 55.000 0.00 0.00 0.00 5.52
2516 2766 0.516877 TCGGAGCATTTCAACAAGCG 59.483 50.000 0.00 0.00 0.00 4.68
2517 2767 1.266718 TGTCGGAGCATTTCAACAAGC 59.733 47.619 0.00 0.00 0.00 4.01
2518 2768 3.495193 CATGTCGGAGCATTTCAACAAG 58.505 45.455 0.00 0.00 30.03 3.16
2519 2769 2.228582 CCATGTCGGAGCATTTCAACAA 59.771 45.455 0.00 0.00 36.56 2.83
2520 2770 1.811965 CCATGTCGGAGCATTTCAACA 59.188 47.619 0.00 0.00 36.56 3.33
2521 2771 1.133025 CCCATGTCGGAGCATTTCAAC 59.867 52.381 0.00 0.00 36.56 3.18
2522 2772 1.462616 CCCATGTCGGAGCATTTCAA 58.537 50.000 0.00 0.00 36.56 2.69
2523 2773 0.394216 CCCCATGTCGGAGCATTTCA 60.394 55.000 0.00 0.00 36.56 2.69
2524 2774 1.103398 CCCCCATGTCGGAGCATTTC 61.103 60.000 0.00 0.00 36.56 2.17
2525 2775 1.076777 CCCCCATGTCGGAGCATTT 60.077 57.895 0.00 0.00 36.56 2.32
2526 2776 2.308722 ACCCCCATGTCGGAGCATT 61.309 57.895 2.43 0.00 36.56 3.56
2527 2777 2.692368 ACCCCCATGTCGGAGCAT 60.692 61.111 2.43 0.00 36.56 3.79
2528 2778 3.716195 CACCCCCATGTCGGAGCA 61.716 66.667 2.43 0.00 36.56 4.26
2529 2779 4.489771 CCACCCCCATGTCGGAGC 62.490 72.222 2.43 0.00 36.56 4.70
2530 2780 3.797353 CCCACCCCCATGTCGGAG 61.797 72.222 2.43 0.00 36.56 4.63
2531 2781 3.874370 TTCCCACCCCCATGTCGGA 62.874 63.158 2.43 0.00 36.56 4.55
2532 2782 2.433646 TTTTCCCACCCCCATGTCGG 62.434 60.000 0.00 0.00 0.00 4.79
2533 2783 1.075836 TTTTCCCACCCCCATGTCG 59.924 57.895 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.