Multiple sequence alignment - TraesCS4A01G220700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G220700 chr4A 100.000 8906 0 0 1 8906 524279168 524288073 0.000000e+00 16447.0
1 TraesCS4A01G220700 chr4A 89.414 888 62 20 2092 2975 681121909 681122768 0.000000e+00 1090.0
2 TraesCS4A01G220700 chr4A 83.045 926 99 31 6476 7353 641252034 641251119 0.000000e+00 787.0
3 TraesCS4A01G220700 chr4A 86.979 576 47 12 5761 6335 479393411 479392863 2.730000e-174 623.0
4 TraesCS4A01G220700 chr4A 89.683 378 30 6 7824 8200 509206526 509206895 2.910000e-129 473.0
5 TraesCS4A01G220700 chr4A 88.158 380 37 6 7822 8200 508835302 508835674 6.340000e-121 446.0
6 TraesCS4A01G220700 chr4A 88.158 304 30 3 5380 5683 479394458 479394161 3.060000e-94 357.0
7 TraesCS4A01G220700 chr4A 83.636 385 45 12 4995 5377 651587548 651587180 6.620000e-91 346.0
8 TraesCS4A01G220700 chr4A 90.210 143 8 6 6295 6434 641252167 641252028 1.980000e-41 182.0
9 TraesCS4A01G220700 chr4A 89.773 88 9 0 6205 6292 530817159 530817246 7.310000e-21 113.0
10 TraesCS4A01G220700 chr2A 96.992 3059 86 6 2973 6029 702076811 702073757 0.000000e+00 5134.0
11 TraesCS4A01G220700 chr2A 97.275 2055 53 2 6025 8079 702063958 702061907 0.000000e+00 3482.0
12 TraesCS4A01G220700 chr2A 92.965 1862 97 18 1126 2978 746930598 746928762 0.000000e+00 2682.0
13 TraesCS4A01G220700 chr2A 96.769 619 16 1 3967 4585 718460489 718461103 0.000000e+00 1029.0
14 TraesCS4A01G220700 chr2A 92.593 216 16 0 911 1126 702077022 702076807 2.410000e-80 311.0
15 TraesCS4A01G220700 chr2A 91.954 174 13 1 8320 8493 702061909 702061737 8.930000e-60 243.0
16 TraesCS4A01G220700 chr2A 85.268 224 28 3 7357 7576 686857993 686858215 9.000000e-55 226.0
17 TraesCS4A01G220700 chr2A 100.000 34 0 0 8299 8332 777403268 777403301 7.460000e-06 63.9
18 TraesCS4A01G220700 chr4B 94.699 2528 91 23 4586 7079 65080379 65082897 0.000000e+00 3886.0
19 TraesCS4A01G220700 chr4B 94.541 2528 97 22 4586 7079 65498039 65500559 0.000000e+00 3866.0
20 TraesCS4A01G220700 chr4B 95.187 1392 56 7 7104 8487 65082893 65084281 0.000000e+00 2189.0
21 TraesCS4A01G220700 chr4B 93.632 1005 55 4 2973 3972 270807789 270806789 0.000000e+00 1493.0
22 TraesCS4A01G220700 chr4B 95.084 834 36 5 7656 8487 65512059 65512889 0.000000e+00 1308.0
23 TraesCS4A01G220700 chr4B 95.893 560 19 2 7104 7660 65500555 65501113 0.000000e+00 904.0
24 TraesCS4A01G220700 chr4B 89.867 375 31 5 7822 8195 123924268 123923900 8.090000e-130 475.0
25 TraesCS4A01G220700 chr4B 90.278 216 19 1 911 1126 270807998 270807785 1.890000e-71 281.0
26 TraesCS4A01G220700 chr4B 86.364 88 12 0 6205 6292 95860508 95860421 7.360000e-16 97.1
27 TraesCS4A01G220700 chr5A 94.152 1864 94 8 1124 2978 546516291 546514434 0.000000e+00 2824.0
28 TraesCS4A01G220700 chr5A 93.915 1857 97 13 1123 2975 644998579 645000423 0.000000e+00 2789.0
29 TraesCS4A01G220700 chr5A 93.541 1858 93 10 1123 2978 588410684 588408852 0.000000e+00 2741.0
30 TraesCS4A01G220700 chr5A 91.599 619 46 3 3967 4585 477000884 477001496 0.000000e+00 850.0
31 TraesCS4A01G220700 chr5A 84.630 540 52 11 3423 3936 546810685 546811219 7.980000e-140 508.0
32 TraesCS4A01G220700 chr5A 95.122 41 2 0 5336 5376 654153736 654153696 2.080000e-06 65.8
33 TraesCS4A01G220700 chr3A 94.076 1857 100 8 1124 2977 30526430 30524581 0.000000e+00 2811.0
34 TraesCS4A01G220700 chr3A 93.133 1864 111 10 1122 2981 717824606 717826456 0.000000e+00 2717.0
35 TraesCS4A01G220700 chr3A 92.612 1868 112 16 1122 2975 73928947 73927092 0.000000e+00 2662.0
36 TraesCS4A01G220700 chr3A 92.421 541 34 5 2995 3530 103589297 103589835 0.000000e+00 765.0
37 TraesCS4A01G220700 chr3A 90.385 104 10 0 8200 8303 334693783 334693680 4.340000e-28 137.0
38 TraesCS4A01G220700 chr3A 81.935 155 15 4 7585 7735 420842523 420842378 1.570000e-22 119.0
39 TraesCS4A01G220700 chr3A 100.000 34 0 0 8299 8332 658731906 658731873 7.460000e-06 63.9
40 TraesCS4A01G220700 chr6A 93.201 1868 101 12 1123 2980 560491713 560489862 0.000000e+00 2723.0
41 TraesCS4A01G220700 chr6A 92.934 1868 101 14 1123 2980 560447864 560446018 0.000000e+00 2689.0
42 TraesCS4A01G220700 chr6A 86.862 784 66 14 4599 5370 37836532 37837290 0.000000e+00 843.0
43 TraesCS4A01G220700 chr6A 92.069 290 22 1 8198 8487 48550593 48550881 2.990000e-109 407.0
44 TraesCS4A01G220700 chr6A 92.308 104 7 1 8200 8303 65556125 65556023 7.210000e-31 147.0
45 TraesCS4A01G220700 chr5D 87.691 1243 100 28 6983 8195 26264862 26266081 0.000000e+00 1399.0
46 TraesCS4A01G220700 chr5D 91.761 619 45 3 3967 4585 375988235 375988847 0.000000e+00 856.0
47 TraesCS4A01G220700 chr5D 83.533 917 99 23 6476 7353 531390042 531390945 0.000000e+00 809.0
48 TraesCS4A01G220700 chr5D 85.990 414 45 10 4599 5003 441940372 441940781 1.780000e-116 431.0
49 TraesCS4A01G220700 chr5D 88.411 302 27 4 5084 5377 6105883 6106184 3.060000e-94 357.0
50 TraesCS4A01G220700 chr5D 86.731 309 15 5 5830 6138 26264399 26264681 4.010000e-83 320.0
51 TraesCS4A01G220700 chr5D 86.975 238 24 5 7353 7589 555463224 555462993 2.470000e-65 261.0
52 TraesCS4A01G220700 chr5D 90.845 142 10 3 6295 6434 531389908 531390048 4.250000e-43 187.0
53 TraesCS4A01G220700 chr4D 94.179 670 36 1 1 670 70580885 70581551 0.000000e+00 1018.0
54 TraesCS4A01G220700 chr4D 91.667 408 21 5 8487 8883 70581887 70582292 3.630000e-153 553.0
55 TraesCS4A01G220700 chr4D 90.078 383 32 5 7822 8203 86060262 86059885 8.030000e-135 492.0
56 TraesCS4A01G220700 chr4D 90.078 383 33 5 7822 8203 86322200 86321822 8.030000e-135 492.0
57 TraesCS4A01G220700 chr4D 89.556 383 32 6 7822 8203 86535636 86535261 6.250000e-131 479.0
58 TraesCS4A01G220700 chr4D 93.600 250 13 2 8198 8446 4290502 4290255 3.930000e-98 370.0
59 TraesCS4A01G220700 chr4D 88.636 88 10 0 6205 6292 65178529 65178442 3.400000e-19 108.0
60 TraesCS4A01G220700 chr5B 87.111 931 77 18 6033 6940 18337376 18338286 0.000000e+00 1014.0
61 TraesCS4A01G220700 chr5B 91.599 619 47 2 3967 4585 448886359 448886972 0.000000e+00 850.0
62 TraesCS4A01G220700 chr5B 83.442 918 101 24 6476 7353 670536645 670537551 0.000000e+00 806.0
63 TraesCS4A01G220700 chr5B 89.672 610 55 5 7144 7749 18343690 18344295 0.000000e+00 771.0
64 TraesCS4A01G220700 chr5B 93.410 349 15 3 3621 3966 660795276 660795619 2.220000e-140 510.0
65 TraesCS4A01G220700 chr5B 82.463 536 45 19 4852 5377 538021765 538022261 2.970000e-114 424.0
66 TraesCS4A01G220700 chr5B 85.714 252 33 3 4599 4848 537998796 537999046 6.860000e-66 263.0
67 TraesCS4A01G220700 chr5B 94.643 168 9 0 6985 7152 18338288 18338455 2.470000e-65 261.0
68 TraesCS4A01G220700 chr5B 93.233 133 9 0 5830 5962 18337094 18337226 7.050000e-46 196.0
69 TraesCS4A01G220700 chr5B 88.028 142 14 3 6295 6434 670536510 670536650 1.990000e-36 165.0
70 TraesCS4A01G220700 chr5B 88.679 53 5 1 2981 3032 619098889 619098837 7.460000e-06 63.9
71 TraesCS4A01G220700 chr6B 85.872 906 98 6 5390 6292 471228872 471229750 0.000000e+00 937.0
72 TraesCS4A01G220700 chr6B 79.208 303 40 14 5532 5815 711496540 711496838 1.180000e-43 189.0
73 TraesCS4A01G220700 chr6B 91.071 112 7 2 947 1057 182643168 182643059 2.000000e-31 148.0
74 TraesCS4A01G220700 chr7D 87.218 798 50 11 4586 5377 30295808 30295057 0.000000e+00 861.0
75 TraesCS4A01G220700 chr7D 84.395 801 64 24 3067 3819 426565515 426564728 0.000000e+00 730.0
76 TraesCS4A01G220700 chr7D 88.739 444 41 6 5380 5820 58205991 58205554 1.320000e-147 534.0
77 TraesCS4A01G220700 chr7D 82.885 520 35 18 5818 6335 58205451 58204984 1.380000e-112 418.0
78 TraesCS4A01G220700 chr7D 88.215 297 27 5 5084 5372 41837617 41837321 1.840000e-91 348.0
79 TraesCS4A01G220700 chr7D 84.348 230 31 3 7365 7590 62965157 62965385 4.190000e-53 220.0
80 TraesCS4A01G220700 chr7D 89.286 112 9 2 947 1057 580168327 580168218 4.340000e-28 137.0
81 TraesCS4A01G220700 chr2B 86.845 783 62 20 3065 3819 19137846 19137077 0.000000e+00 837.0
82 TraesCS4A01G220700 chr2B 94.277 332 12 2 4121 4449 703699691 703700018 1.330000e-137 501.0
83 TraesCS4A01G220700 chr2B 94.805 154 8 0 3967 4120 703689770 703689923 3.210000e-59 241.0
84 TraesCS4A01G220700 chr2B 84.581 227 28 4 7357 7579 650281345 650281568 1.510000e-52 219.0
85 TraesCS4A01G220700 chr2B 92.771 83 1 4 4508 4585 703700095 703700177 2.030000e-21 115.0
86 TraesCS4A01G220700 chr2B 95.556 45 2 0 4478 4522 703700008 703700052 1.240000e-08 73.1
87 TraesCS4A01G220700 chr2D 95.503 467 15 2 4121 4585 584271294 584271756 0.000000e+00 741.0
88 TraesCS4A01G220700 chr2D 96.296 162 6 0 3967 4128 584265944 584266105 5.300000e-67 267.0
89 TraesCS4A01G220700 chr2D 85.714 224 28 3 7357 7576 544650729 544650952 5.380000e-57 233.0
90 TraesCS4A01G220700 chr2D 92.424 66 5 0 947 1012 640333474 640333539 2.650000e-15 95.3
91 TraesCS4A01G220700 chr6D 88.673 565 59 3 5380 5941 438543648 438543086 0.000000e+00 684.0
92 TraesCS4A01G220700 chr3B 82.276 457 56 15 4928 5377 695588035 695587597 1.090000e-98 372.0
93 TraesCS4A01G220700 chr3B 90.385 104 10 0 8200 8303 306559178 306559281 4.340000e-28 137.0
94 TraesCS4A01G220700 chr3B 89.474 57 6 0 7925 7981 680463534 680463590 1.240000e-08 73.1
95 TraesCS4A01G220700 chr1D 84.520 323 34 8 7895 8203 450611244 450611564 1.120000e-78 305.0
96 TraesCS4A01G220700 chr1D 85.000 140 16 2 5079 5218 16975501 16975635 4.340000e-28 137.0
97 TraesCS4A01G220700 chr1A 83.043 230 34 3 7365 7590 255752477 255752705 4.220000e-48 204.0
98 TraesCS4A01G220700 chr7B 87.970 133 12 2 7586 7714 611780133 611780001 4.310000e-33 154.0
99 TraesCS4A01G220700 chr7B 97.436 39 1 0 8299 8337 40660032 40659994 5.770000e-07 67.6
100 TraesCS4A01G220700 chrUn 90.385 104 9 1 8200 8303 39185459 39185561 1.560000e-27 135.0
101 TraesCS4A01G220700 chrUn 100.000 28 0 0 8879 8906 473445611 473445584 1.600000e-02 52.8
102 TraesCS4A01G220700 chr3D 90.909 99 8 1 8203 8301 254340530 254340627 2.020000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G220700 chr4A 524279168 524288073 8905 False 16447.000000 16447 100.000000 1 8906 1 chr4A.!!$F3 8905
1 TraesCS4A01G220700 chr4A 681121909 681122768 859 False 1090.000000 1090 89.414000 2092 2975 1 chr4A.!!$F5 883
2 TraesCS4A01G220700 chr4A 479392863 479394458 1595 True 490.000000 623 87.568500 5380 6335 2 chr4A.!!$R2 955
3 TraesCS4A01G220700 chr4A 641251119 641252167 1048 True 484.500000 787 86.627500 6295 7353 2 chr4A.!!$R3 1058
4 TraesCS4A01G220700 chr2A 702073757 702077022 3265 True 2722.500000 5134 94.792500 911 6029 2 chr2A.!!$R3 5118
5 TraesCS4A01G220700 chr2A 746928762 746930598 1836 True 2682.000000 2682 92.965000 1126 2978 1 chr2A.!!$R1 1852
6 TraesCS4A01G220700 chr2A 702061737 702063958 2221 True 1862.500000 3482 94.614500 6025 8493 2 chr2A.!!$R2 2468
7 TraesCS4A01G220700 chr2A 718460489 718461103 614 False 1029.000000 1029 96.769000 3967 4585 1 chr2A.!!$F2 618
8 TraesCS4A01G220700 chr4B 65080379 65084281 3902 False 3037.500000 3886 94.943000 4586 8487 2 chr4B.!!$F2 3901
9 TraesCS4A01G220700 chr4B 65498039 65501113 3074 False 2385.000000 3866 95.217000 4586 7660 2 chr4B.!!$F3 3074
10 TraesCS4A01G220700 chr4B 65512059 65512889 830 False 1308.000000 1308 95.084000 7656 8487 1 chr4B.!!$F1 831
11 TraesCS4A01G220700 chr4B 270806789 270807998 1209 True 887.000000 1493 91.955000 911 3972 2 chr4B.!!$R3 3061
12 TraesCS4A01G220700 chr5A 546514434 546516291 1857 True 2824.000000 2824 94.152000 1124 2978 1 chr5A.!!$R1 1854
13 TraesCS4A01G220700 chr5A 644998579 645000423 1844 False 2789.000000 2789 93.915000 1123 2975 1 chr5A.!!$F3 1852
14 TraesCS4A01G220700 chr5A 588408852 588410684 1832 True 2741.000000 2741 93.541000 1123 2978 1 chr5A.!!$R2 1855
15 TraesCS4A01G220700 chr5A 477000884 477001496 612 False 850.000000 850 91.599000 3967 4585 1 chr5A.!!$F1 618
16 TraesCS4A01G220700 chr5A 546810685 546811219 534 False 508.000000 508 84.630000 3423 3936 1 chr5A.!!$F2 513
17 TraesCS4A01G220700 chr3A 30524581 30526430 1849 True 2811.000000 2811 94.076000 1124 2977 1 chr3A.!!$R1 1853
18 TraesCS4A01G220700 chr3A 717824606 717826456 1850 False 2717.000000 2717 93.133000 1122 2981 1 chr3A.!!$F2 1859
19 TraesCS4A01G220700 chr3A 73927092 73928947 1855 True 2662.000000 2662 92.612000 1122 2975 1 chr3A.!!$R2 1853
20 TraesCS4A01G220700 chr3A 103589297 103589835 538 False 765.000000 765 92.421000 2995 3530 1 chr3A.!!$F1 535
21 TraesCS4A01G220700 chr6A 560489862 560491713 1851 True 2723.000000 2723 93.201000 1123 2980 1 chr6A.!!$R3 1857
22 TraesCS4A01G220700 chr6A 560446018 560447864 1846 True 2689.000000 2689 92.934000 1123 2980 1 chr6A.!!$R2 1857
23 TraesCS4A01G220700 chr6A 37836532 37837290 758 False 843.000000 843 86.862000 4599 5370 1 chr6A.!!$F1 771
24 TraesCS4A01G220700 chr5D 26264399 26266081 1682 False 859.500000 1399 87.211000 5830 8195 2 chr5D.!!$F4 2365
25 TraesCS4A01G220700 chr5D 375988235 375988847 612 False 856.000000 856 91.761000 3967 4585 1 chr5D.!!$F2 618
26 TraesCS4A01G220700 chr5D 531389908 531390945 1037 False 498.000000 809 87.189000 6295 7353 2 chr5D.!!$F5 1058
27 TraesCS4A01G220700 chr4D 70580885 70582292 1407 False 785.500000 1018 92.923000 1 8883 2 chr4D.!!$F1 8882
28 TraesCS4A01G220700 chr5B 448886359 448886972 613 False 850.000000 850 91.599000 3967 4585 1 chr5B.!!$F2 618
29 TraesCS4A01G220700 chr5B 18343690 18344295 605 False 771.000000 771 89.672000 7144 7749 1 chr5B.!!$F1 605
30 TraesCS4A01G220700 chr5B 18337094 18338455 1361 False 490.333333 1014 91.662333 5830 7152 3 chr5B.!!$F6 1322
31 TraesCS4A01G220700 chr5B 670536510 670537551 1041 False 485.500000 806 85.735000 6295 7353 2 chr5B.!!$F7 1058
32 TraesCS4A01G220700 chr6B 471228872 471229750 878 False 937.000000 937 85.872000 5390 6292 1 chr6B.!!$F1 902
33 TraesCS4A01G220700 chr7D 30295057 30295808 751 True 861.000000 861 87.218000 4586 5377 1 chr7D.!!$R1 791
34 TraesCS4A01G220700 chr7D 426564728 426565515 787 True 730.000000 730 84.395000 3067 3819 1 chr7D.!!$R3 752
35 TraesCS4A01G220700 chr7D 58204984 58205991 1007 True 476.000000 534 85.812000 5380 6335 2 chr7D.!!$R5 955
36 TraesCS4A01G220700 chr2B 19137077 19137846 769 True 837.000000 837 86.845000 3065 3819 1 chr2B.!!$R1 754
37 TraesCS4A01G220700 chr6D 438543086 438543648 562 True 684.000000 684 88.673000 5380 5941 1 chr6D.!!$R1 561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
755 756 0.179048 GGATGATGACGGTGGCATGA 60.179 55.000 0.00 0.0 0.00 3.07 F
1062 1063 0.108329 GGGAGAGAAAACGCATCGGA 60.108 55.000 0.00 0.0 0.00 4.55 F
1110 1111 0.687757 ATCCCACGCAGCTTCCTCTA 60.688 55.000 0.00 0.0 0.00 2.43 F
2889 2925 0.179084 CAGCGAAAATCGGGCTCCTA 60.179 55.000 1.64 0.0 40.84 2.94 F
3996 4139 4.094590 CAGAAGGATGATTCAGAAGCACAC 59.905 45.833 2.45 0.0 0.00 3.82 F
4836 4982 0.935942 TGGGATGGGCTGATTTGGAT 59.064 50.000 0.00 0.0 0.00 3.41 F
4872 5019 4.661222 TGGCTGTGATCCAAACATTCTTA 58.339 39.130 0.00 0.0 0.00 2.10 F
6360 7454 1.352083 TCCCTGGTTCCAACAGAGAG 58.648 55.000 0.00 0.0 38.20 3.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2499 2532 1.082679 CGGCGACTCGTACTCTCTCA 61.083 60.0 0.00 0.0 0.00 3.27 R
2871 2907 0.105039 CTAGGAGCCCGATTTTCGCT 59.895 55.0 0.00 0.0 38.82 4.93 R
2896 2932 0.958382 CCGAAAAATCGGCCCAGTCA 60.958 55.0 4.12 0.0 46.76 3.41 R
4113 4256 1.226746 GGGAAACGGTCTCAAGTGTG 58.773 55.0 0.00 0.0 0.00 3.82 R
4848 4994 1.843368 ATGTTTGGATCACAGCCAGG 58.157 50.0 0.00 0.0 36.64 4.45 R
6241 7333 0.034476 CAGTGCAGAGCAGAGTTGGA 59.966 55.0 0.00 0.0 40.08 3.53 R
6792 7908 5.355071 GGACATAGTTCATGCAATCAAGTGA 59.645 40.0 0.00 0.0 38.29 3.41 R
8185 9401 1.142936 ATCCTAGGCATGATGGTGCA 58.857 50.0 2.96 0.0 46.81 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.682684 CCTCCCGAGCCACTGTAGT 60.683 63.158 0.00 0.00 0.00 2.73
26 27 1.513158 CTCCCGAGCCACTGTAGTG 59.487 63.158 5.05 5.05 45.23 2.74
114 115 1.460255 CCAGGAAAGGGGAGCAACA 59.540 57.895 0.00 0.00 0.00 3.33
124 125 3.286751 GAGCAACAACCGCCTGCA 61.287 61.111 0.00 0.00 38.58 4.41
131 132 2.034687 AACCGCCTGCAAGCATCT 59.965 55.556 8.26 0.00 0.00 2.90
136 137 2.515523 CCTGCAAGCATCTCGGGG 60.516 66.667 0.00 0.00 0.00 5.73
175 176 0.890683 CAGATTTGGCCAACCCAGAC 59.109 55.000 20.35 6.18 46.39 3.51
218 219 4.284550 GAGCAGCCCCCAACACCA 62.285 66.667 0.00 0.00 0.00 4.17
303 304 3.221389 GCCATGCCGCACCATGAT 61.221 61.111 13.49 0.00 44.12 2.45
334 335 2.672996 AATCACACCGCACCAGCC 60.673 61.111 0.00 0.00 37.52 4.85
462 463 2.507102 CACGAGCACCGCGATTCT 60.507 61.111 8.23 0.00 43.32 2.40
517 518 3.627237 CCACTAAGGAGGAAGAGAGCTCT 60.627 52.174 18.28 18.28 40.17 4.09
574 575 4.966787 GAAAGTGGTGGGGCGGCA 62.967 66.667 12.47 0.00 0.00 5.69
592 593 1.888391 GCAAGAAAGAGGTTGGAGGGG 60.888 57.143 0.00 0.00 0.00 4.79
594 595 1.000771 GAAAGAGGTTGGAGGGGGC 60.001 63.158 0.00 0.00 0.00 5.80
618 619 4.660938 GCCAGGGTTCGCCACCTT 62.661 66.667 3.87 0.00 46.38 3.50
639 640 2.747460 GCATGAGCTTGTCGGGCA 60.747 61.111 0.00 0.00 37.91 5.36
679 680 4.745649 CACTAGTTGTGTAGGTCCTTAGC 58.254 47.826 0.00 0.00 41.53 3.09
680 681 4.219944 CACTAGTTGTGTAGGTCCTTAGCA 59.780 45.833 0.00 0.00 41.53 3.49
681 682 5.024118 ACTAGTTGTGTAGGTCCTTAGCAT 58.976 41.667 0.00 0.00 0.00 3.79
682 683 4.207891 AGTTGTGTAGGTCCTTAGCATG 57.792 45.455 0.00 0.00 0.00 4.06
683 684 3.838317 AGTTGTGTAGGTCCTTAGCATGA 59.162 43.478 0.00 0.00 0.00 3.07
684 685 4.471386 AGTTGTGTAGGTCCTTAGCATGAT 59.529 41.667 0.00 0.00 0.00 2.45
685 686 4.406648 TGTGTAGGTCCTTAGCATGATG 57.593 45.455 0.00 0.00 0.00 3.07
686 687 4.030216 TGTGTAGGTCCTTAGCATGATGA 58.970 43.478 0.00 0.00 0.00 2.92
687 688 4.141937 TGTGTAGGTCCTTAGCATGATGAC 60.142 45.833 0.00 0.00 0.00 3.06
688 689 4.100189 GTGTAGGTCCTTAGCATGATGACT 59.900 45.833 0.00 0.00 0.00 3.41
689 690 4.716784 TGTAGGTCCTTAGCATGATGACTT 59.283 41.667 0.00 0.00 0.00 3.01
690 691 4.851639 AGGTCCTTAGCATGATGACTTT 57.148 40.909 0.00 0.00 0.00 2.66
691 692 5.184892 AGGTCCTTAGCATGATGACTTTT 57.815 39.130 0.00 0.00 0.00 2.27
692 693 5.189180 AGGTCCTTAGCATGATGACTTTTC 58.811 41.667 0.00 0.00 0.00 2.29
693 694 4.034510 GGTCCTTAGCATGATGACTTTTCG 59.965 45.833 0.00 0.00 0.00 3.46
694 695 4.870426 GTCCTTAGCATGATGACTTTTCGA 59.130 41.667 0.00 0.00 0.00 3.71
695 696 4.870426 TCCTTAGCATGATGACTTTTCGAC 59.130 41.667 0.00 0.00 0.00 4.20
696 697 4.872691 CCTTAGCATGATGACTTTTCGACT 59.127 41.667 0.00 0.00 0.00 4.18
697 698 5.220548 CCTTAGCATGATGACTTTTCGACTG 60.221 44.000 0.00 0.00 0.00 3.51
698 699 3.930336 AGCATGATGACTTTTCGACTGA 58.070 40.909 0.00 0.00 0.00 3.41
699 700 3.931468 AGCATGATGACTTTTCGACTGAG 59.069 43.478 0.00 0.00 0.00 3.35
700 701 3.681897 GCATGATGACTTTTCGACTGAGT 59.318 43.478 0.00 0.00 0.00 3.41
701 702 4.435253 GCATGATGACTTTTCGACTGAGTG 60.435 45.833 0.00 0.00 0.00 3.51
702 703 3.059884 TGATGACTTTTCGACTGAGTGC 58.940 45.455 0.00 0.00 0.00 4.40
703 704 2.890808 TGACTTTTCGACTGAGTGCT 57.109 45.000 0.00 0.00 0.00 4.40
704 705 4.022329 TGATGACTTTTCGACTGAGTGCTA 60.022 41.667 0.00 0.00 0.00 3.49
705 706 3.639538 TGACTTTTCGACTGAGTGCTAC 58.360 45.455 0.00 0.00 0.00 3.58
706 707 3.067601 TGACTTTTCGACTGAGTGCTACA 59.932 43.478 0.00 0.00 0.00 2.74
707 708 4.049186 GACTTTTCGACTGAGTGCTACAA 58.951 43.478 0.00 0.00 0.00 2.41
708 709 3.802685 ACTTTTCGACTGAGTGCTACAAC 59.197 43.478 0.00 0.00 0.00 3.32
709 710 3.446310 TTTCGACTGAGTGCTACAACA 57.554 42.857 0.00 0.00 0.00 3.33
710 711 3.446310 TTCGACTGAGTGCTACAACAA 57.554 42.857 0.00 0.00 0.00 2.83
711 712 3.013276 TCGACTGAGTGCTACAACAAG 57.987 47.619 0.00 0.00 0.00 3.16
712 713 2.061773 CGACTGAGTGCTACAACAAGG 58.938 52.381 0.00 0.00 0.00 3.61
713 714 2.545952 CGACTGAGTGCTACAACAAGGT 60.546 50.000 0.00 0.00 0.00 3.50
714 715 3.060602 GACTGAGTGCTACAACAAGGTC 58.939 50.000 0.00 0.00 0.00 3.85
715 716 2.700897 ACTGAGTGCTACAACAAGGTCT 59.299 45.455 0.00 0.00 0.00 3.85
716 717 3.895656 ACTGAGTGCTACAACAAGGTCTA 59.104 43.478 0.00 0.00 0.00 2.59
717 718 4.528596 ACTGAGTGCTACAACAAGGTCTAT 59.471 41.667 0.00 0.00 0.00 1.98
718 719 5.012148 ACTGAGTGCTACAACAAGGTCTATT 59.988 40.000 0.00 0.00 0.00 1.73
719 720 6.210784 ACTGAGTGCTACAACAAGGTCTATTA 59.789 38.462 0.00 0.00 0.00 0.98
720 721 6.631016 TGAGTGCTACAACAAGGTCTATTAG 58.369 40.000 0.00 0.00 0.00 1.73
721 722 5.978814 AGTGCTACAACAAGGTCTATTAGG 58.021 41.667 0.00 0.00 0.00 2.69
722 723 5.484290 AGTGCTACAACAAGGTCTATTAGGT 59.516 40.000 0.00 0.00 0.00 3.08
723 724 6.013639 AGTGCTACAACAAGGTCTATTAGGTT 60.014 38.462 0.00 0.00 0.00 3.50
724 725 6.313164 GTGCTACAACAAGGTCTATTAGGTTC 59.687 42.308 0.00 0.00 0.00 3.62
725 726 5.816258 GCTACAACAAGGTCTATTAGGTTCC 59.184 44.000 0.00 0.00 0.00 3.62
726 727 4.828829 ACAACAAGGTCTATTAGGTTCCG 58.171 43.478 0.00 0.00 0.00 4.30
727 728 4.529377 ACAACAAGGTCTATTAGGTTCCGA 59.471 41.667 0.00 0.00 0.00 4.55
728 729 5.189145 ACAACAAGGTCTATTAGGTTCCGAT 59.811 40.000 0.00 0.00 0.00 4.18
729 730 6.381994 ACAACAAGGTCTATTAGGTTCCGATA 59.618 38.462 0.00 0.00 0.00 2.92
730 731 7.093201 ACAACAAGGTCTATTAGGTTCCGATAA 60.093 37.037 0.00 0.00 0.00 1.75
731 732 7.052142 ACAAGGTCTATTAGGTTCCGATAAG 57.948 40.000 0.00 0.00 0.00 1.73
732 733 6.837568 ACAAGGTCTATTAGGTTCCGATAAGA 59.162 38.462 0.00 0.00 0.00 2.10
733 734 7.014422 ACAAGGTCTATTAGGTTCCGATAAGAG 59.986 40.741 0.00 0.00 0.00 2.85
734 735 6.850234 AGGTCTATTAGGTTCCGATAAGAGA 58.150 40.000 0.00 0.00 29.29 3.10
735 736 6.943718 AGGTCTATTAGGTTCCGATAAGAGAG 59.056 42.308 0.00 0.00 31.76 3.20
736 737 6.151480 GGTCTATTAGGTTCCGATAAGAGAGG 59.849 46.154 0.00 0.00 31.76 3.69
737 738 6.151480 GTCTATTAGGTTCCGATAAGAGAGGG 59.849 46.154 0.00 0.00 31.76 4.30
738 739 4.531357 TTAGGTTCCGATAAGAGAGGGA 57.469 45.455 0.00 0.00 0.00 4.20
739 740 3.621682 AGGTTCCGATAAGAGAGGGAT 57.378 47.619 0.00 0.00 0.00 3.85
740 741 3.235200 AGGTTCCGATAAGAGAGGGATG 58.765 50.000 0.00 0.00 0.00 3.51
741 742 3.117093 AGGTTCCGATAAGAGAGGGATGA 60.117 47.826 0.00 0.00 0.00 2.92
742 743 3.835395 GGTTCCGATAAGAGAGGGATGAT 59.165 47.826 0.00 0.00 0.00 2.45
743 744 4.322349 GGTTCCGATAAGAGAGGGATGATG 60.322 50.000 0.00 0.00 0.00 3.07
744 745 4.388577 TCCGATAAGAGAGGGATGATGA 57.611 45.455 0.00 0.00 0.00 2.92
745 746 4.082845 TCCGATAAGAGAGGGATGATGAC 58.917 47.826 0.00 0.00 0.00 3.06
746 747 3.119673 CCGATAAGAGAGGGATGATGACG 60.120 52.174 0.00 0.00 0.00 4.35
747 748 3.119673 CGATAAGAGAGGGATGATGACGG 60.120 52.174 0.00 0.00 0.00 4.79
748 749 2.166907 AAGAGAGGGATGATGACGGT 57.833 50.000 0.00 0.00 0.00 4.83
749 750 1.407936 AGAGAGGGATGATGACGGTG 58.592 55.000 0.00 0.00 0.00 4.94
750 751 0.390860 GAGAGGGATGATGACGGTGG 59.609 60.000 0.00 0.00 0.00 4.61
751 752 1.227674 GAGGGATGATGACGGTGGC 60.228 63.158 0.00 0.00 0.00 5.01
752 753 1.971505 GAGGGATGATGACGGTGGCA 61.972 60.000 0.00 0.00 0.00 4.92
753 754 1.149174 GGGATGATGACGGTGGCAT 59.851 57.895 0.00 0.00 0.00 4.40
754 755 1.168407 GGGATGATGACGGTGGCATG 61.168 60.000 0.00 0.00 0.00 4.06
755 756 0.179048 GGATGATGACGGTGGCATGA 60.179 55.000 0.00 0.00 0.00 3.07
756 757 0.940126 GATGATGACGGTGGCATGAC 59.060 55.000 0.00 0.00 0.00 3.06
757 758 0.543277 ATGATGACGGTGGCATGACT 59.457 50.000 0.00 0.00 0.00 3.41
758 759 0.324614 TGATGACGGTGGCATGACTT 59.675 50.000 0.00 0.00 0.00 3.01
759 760 1.271325 TGATGACGGTGGCATGACTTT 60.271 47.619 0.00 0.00 0.00 2.66
760 761 1.131126 GATGACGGTGGCATGACTTTG 59.869 52.381 0.00 0.00 0.00 2.77
761 762 0.888736 TGACGGTGGCATGACTTTGG 60.889 55.000 0.00 0.00 0.00 3.28
762 763 2.200170 GACGGTGGCATGACTTTGGC 62.200 60.000 0.00 0.00 42.20 4.52
763 764 1.973281 CGGTGGCATGACTTTGGCT 60.973 57.895 0.00 0.00 42.34 4.75
764 765 1.885871 GGTGGCATGACTTTGGCTC 59.114 57.895 0.00 0.00 42.34 4.70
765 766 1.503542 GTGGCATGACTTTGGCTCG 59.496 57.895 0.00 0.00 42.34 5.03
766 767 2.334946 TGGCATGACTTTGGCTCGC 61.335 57.895 0.00 0.00 42.34 5.03
767 768 2.042831 GGCATGACTTTGGCTCGCT 61.043 57.895 0.00 0.00 39.00 4.93
768 769 0.744414 GGCATGACTTTGGCTCGCTA 60.744 55.000 0.00 0.00 39.00 4.26
769 770 1.303309 GCATGACTTTGGCTCGCTAT 58.697 50.000 0.00 0.00 0.00 2.97
770 771 1.003116 GCATGACTTTGGCTCGCTATG 60.003 52.381 0.00 0.00 0.00 2.23
771 772 1.600957 CATGACTTTGGCTCGCTATGG 59.399 52.381 0.00 0.00 0.00 2.74
772 773 0.613260 TGACTTTGGCTCGCTATGGT 59.387 50.000 0.00 0.00 0.00 3.55
773 774 1.009829 GACTTTGGCTCGCTATGGTG 58.990 55.000 0.00 0.00 0.00 4.17
774 775 0.613260 ACTTTGGCTCGCTATGGTGA 59.387 50.000 0.00 0.00 0.00 4.02
775 776 1.210478 ACTTTGGCTCGCTATGGTGAT 59.790 47.619 0.00 0.00 0.00 3.06
776 777 2.292267 CTTTGGCTCGCTATGGTGATT 58.708 47.619 0.00 0.00 0.00 2.57
777 778 3.118408 ACTTTGGCTCGCTATGGTGATTA 60.118 43.478 0.00 0.00 0.00 1.75
778 779 3.769739 TTGGCTCGCTATGGTGATTAT 57.230 42.857 0.00 0.00 0.00 1.28
779 780 4.882842 TTGGCTCGCTATGGTGATTATA 57.117 40.909 0.00 0.00 0.00 0.98
780 781 4.456280 TGGCTCGCTATGGTGATTATAG 57.544 45.455 0.00 0.00 0.00 1.31
781 782 3.832490 TGGCTCGCTATGGTGATTATAGT 59.168 43.478 0.00 0.00 32.09 2.12
782 783 4.082190 TGGCTCGCTATGGTGATTATAGTC 60.082 45.833 0.00 0.00 32.09 2.59
783 784 4.099120 GCTCGCTATGGTGATTATAGTCG 58.901 47.826 0.00 0.00 33.30 4.18
784 785 4.379603 GCTCGCTATGGTGATTATAGTCGT 60.380 45.833 0.00 0.00 33.52 4.34
785 786 5.700722 TCGCTATGGTGATTATAGTCGTT 57.299 39.130 0.00 0.00 33.52 3.85
786 787 5.458015 TCGCTATGGTGATTATAGTCGTTG 58.542 41.667 0.00 0.00 33.52 4.10
787 788 4.090066 CGCTATGGTGATTATAGTCGTTGC 59.910 45.833 0.00 0.00 32.09 4.17
788 789 5.230942 GCTATGGTGATTATAGTCGTTGCT 58.769 41.667 0.00 0.00 32.09 3.91
789 790 6.387465 GCTATGGTGATTATAGTCGTTGCTA 58.613 40.000 0.00 0.00 32.09 3.49
790 791 6.528423 GCTATGGTGATTATAGTCGTTGCTAG 59.472 42.308 0.00 0.00 32.09 3.42
791 792 6.650427 ATGGTGATTATAGTCGTTGCTAGA 57.350 37.500 0.00 0.00 0.00 2.43
792 793 6.650427 TGGTGATTATAGTCGTTGCTAGAT 57.350 37.500 0.00 0.00 0.00 1.98
793 794 6.447162 TGGTGATTATAGTCGTTGCTAGATG 58.553 40.000 0.00 0.00 0.00 2.90
794 795 6.264518 TGGTGATTATAGTCGTTGCTAGATGA 59.735 38.462 0.00 0.00 0.00 2.92
795 796 7.039714 TGGTGATTATAGTCGTTGCTAGATGAT 60.040 37.037 0.00 0.00 0.00 2.45
796 797 7.486551 GGTGATTATAGTCGTTGCTAGATGATC 59.513 40.741 0.00 0.00 0.00 2.92
797 798 8.240682 GTGATTATAGTCGTTGCTAGATGATCT 58.759 37.037 0.00 0.00 0.00 2.75
798 799 9.449719 TGATTATAGTCGTTGCTAGATGATCTA 57.550 33.333 1.72 1.72 0.00 1.98
804 805 7.941919 AGTCGTTGCTAGATGATCTATAAACA 58.058 34.615 19.12 8.45 30.10 2.83
805 806 8.580720 AGTCGTTGCTAGATGATCTATAAACAT 58.419 33.333 19.12 8.37 30.10 2.71
806 807 9.197694 GTCGTTGCTAGATGATCTATAAACATT 57.802 33.333 19.12 0.00 30.10 2.71
807 808 9.196552 TCGTTGCTAGATGATCTATAAACATTG 57.803 33.333 19.12 9.39 30.10 2.82
808 809 8.438513 CGTTGCTAGATGATCTATAAACATTGG 58.561 37.037 19.12 6.80 30.10 3.16
809 810 9.494271 GTTGCTAGATGATCTATAAACATTGGA 57.506 33.333 16.40 0.00 30.64 3.53
825 826 8.732746 AAACATTGGATTTATAGTTCTAGCGT 57.267 30.769 0.00 0.00 0.00 5.07
826 827 8.732746 AACATTGGATTTATAGTTCTAGCGTT 57.267 30.769 0.00 0.00 0.00 4.84
827 828 8.366671 ACATTGGATTTATAGTTCTAGCGTTC 57.633 34.615 0.00 0.00 0.00 3.95
828 829 8.204836 ACATTGGATTTATAGTTCTAGCGTTCT 58.795 33.333 0.00 0.00 0.00 3.01
829 830 9.046296 CATTGGATTTATAGTTCTAGCGTTCTT 57.954 33.333 0.00 0.00 0.00 2.52
830 831 9.614792 ATTGGATTTATAGTTCTAGCGTTCTTT 57.385 29.630 0.00 0.00 0.00 2.52
831 832 9.444600 TTGGATTTATAGTTCTAGCGTTCTTTT 57.555 29.630 0.00 0.00 0.00 2.27
832 833 9.444600 TGGATTTATAGTTCTAGCGTTCTTTTT 57.555 29.630 0.00 0.00 0.00 1.94
838 839 5.939457 AGTTCTAGCGTTCTTTTTATTGCC 58.061 37.500 0.00 0.00 0.00 4.52
839 840 5.472137 AGTTCTAGCGTTCTTTTTATTGCCA 59.528 36.000 0.00 0.00 0.00 4.92
840 841 6.151144 AGTTCTAGCGTTCTTTTTATTGCCAT 59.849 34.615 0.00 0.00 0.00 4.40
841 842 6.509418 TCTAGCGTTCTTTTTATTGCCATT 57.491 33.333 0.00 0.00 0.00 3.16
842 843 6.321717 TCTAGCGTTCTTTTTATTGCCATTG 58.678 36.000 0.00 0.00 0.00 2.82
843 844 4.881920 AGCGTTCTTTTTATTGCCATTGT 58.118 34.783 0.00 0.00 0.00 2.71
844 845 4.685628 AGCGTTCTTTTTATTGCCATTGTG 59.314 37.500 0.00 0.00 0.00 3.33
845 846 4.447389 GCGTTCTTTTTATTGCCATTGTGT 59.553 37.500 0.00 0.00 0.00 3.72
846 847 5.631512 GCGTTCTTTTTATTGCCATTGTGTA 59.368 36.000 0.00 0.00 0.00 2.90
847 848 6.310224 GCGTTCTTTTTATTGCCATTGTGTAT 59.690 34.615 0.00 0.00 0.00 2.29
848 849 7.665471 CGTTCTTTTTATTGCCATTGTGTATG 58.335 34.615 0.00 0.00 0.00 2.39
862 863 7.745022 CATTGTGTATGGTGTTTGATGAATC 57.255 36.000 0.00 0.00 0.00 2.52
863 864 5.544136 TGTGTATGGTGTTTGATGAATCG 57.456 39.130 0.00 0.00 0.00 3.34
864 865 5.241662 TGTGTATGGTGTTTGATGAATCGA 58.758 37.500 0.00 0.00 0.00 3.59
865 866 5.879777 TGTGTATGGTGTTTGATGAATCGAT 59.120 36.000 0.00 0.00 0.00 3.59
866 867 6.183360 TGTGTATGGTGTTTGATGAATCGATG 60.183 38.462 0.00 0.00 0.00 3.84
867 868 4.906065 ATGGTGTTTGATGAATCGATGG 57.094 40.909 0.00 0.00 0.00 3.51
868 869 3.949132 TGGTGTTTGATGAATCGATGGA 58.051 40.909 0.00 0.00 0.00 3.41
869 870 4.331108 TGGTGTTTGATGAATCGATGGAA 58.669 39.130 0.00 0.00 0.00 3.53
870 871 4.764308 TGGTGTTTGATGAATCGATGGAAA 59.236 37.500 0.00 0.00 0.00 3.13
871 872 5.242615 TGGTGTTTGATGAATCGATGGAAAA 59.757 36.000 0.00 0.00 0.00 2.29
872 873 6.071447 TGGTGTTTGATGAATCGATGGAAAAT 60.071 34.615 0.00 0.00 0.00 1.82
873 874 6.473455 GGTGTTTGATGAATCGATGGAAAATC 59.527 38.462 0.00 0.00 0.00 2.17
874 875 7.253422 GTGTTTGATGAATCGATGGAAAATCT 58.747 34.615 0.00 0.00 0.00 2.40
875 876 7.756722 GTGTTTGATGAATCGATGGAAAATCTT 59.243 33.333 0.00 0.00 0.00 2.40
876 877 8.306038 TGTTTGATGAATCGATGGAAAATCTTT 58.694 29.630 0.00 0.00 0.00 2.52
877 878 8.801913 GTTTGATGAATCGATGGAAAATCTTTC 58.198 33.333 0.00 0.00 0.00 2.62
878 879 7.031226 TGATGAATCGATGGAAAATCTTTCC 57.969 36.000 10.63 10.63 39.03 3.13
879 880 5.484173 TGAATCGATGGAAAATCTTTCCG 57.516 39.130 12.34 2.78 41.43 4.30
880 881 5.182487 TGAATCGATGGAAAATCTTTCCGA 58.818 37.500 12.34 7.33 41.43 4.55
881 882 5.645929 TGAATCGATGGAAAATCTTTCCGAA 59.354 36.000 12.34 0.00 41.43 4.30
882 883 6.150307 TGAATCGATGGAAAATCTTTCCGAAA 59.850 34.615 12.34 0.00 41.43 3.46
883 884 5.950758 TCGATGGAAAATCTTTCCGAAAA 57.049 34.783 12.34 0.00 41.43 2.29
884 885 6.320494 TCGATGGAAAATCTTTCCGAAAAA 57.680 33.333 12.34 0.00 41.43 1.94
885 886 6.919721 TCGATGGAAAATCTTTCCGAAAAAT 58.080 32.000 12.34 1.72 41.43 1.82
886 887 8.046294 TCGATGGAAAATCTTTCCGAAAAATA 57.954 30.769 12.34 0.00 41.43 1.40
887 888 8.516234 TCGATGGAAAATCTTTCCGAAAAATAA 58.484 29.630 12.34 0.00 41.43 1.40
888 889 8.798153 CGATGGAAAATCTTTCCGAAAAATAAG 58.202 33.333 12.34 0.00 41.43 1.73
889 890 9.855021 GATGGAAAATCTTTCCGAAAAATAAGA 57.145 29.630 12.34 0.00 41.43 2.10
891 892 9.855021 TGGAAAATCTTTCCGAAAAATAAGATC 57.145 29.630 12.34 0.00 41.43 2.75
892 893 9.855021 GGAAAATCTTTCCGAAAAATAAGATCA 57.145 29.630 2.53 0.00 36.58 2.92
979 980 0.250234 CATGTCCACGTCATCACCCT 59.750 55.000 0.00 0.00 0.00 4.34
1015 1016 1.028868 GCCAATGGCGAGAGAGCTTT 61.029 55.000 9.14 0.00 39.62 3.51
1037 1038 1.105457 GCTAGCCAATTGGATGTGCA 58.895 50.000 29.02 5.65 35.54 4.57
1057 1058 1.633774 AGAGAGGGAGAGAAAACGCA 58.366 50.000 0.00 0.00 0.00 5.24
1062 1063 0.108329 GGGAGAGAAAACGCATCGGA 60.108 55.000 0.00 0.00 0.00 4.55
1088 1089 3.496507 GGACAAGAGAGACAAAAGCAGTC 59.503 47.826 0.00 0.00 36.26 3.51
1110 1111 0.687757 ATCCCACGCAGCTTCCTCTA 60.688 55.000 0.00 0.00 0.00 2.43
1500 1518 4.864334 CGTCCCTGCTGCATCCCC 62.864 72.222 1.31 0.00 0.00 4.81
1695 1720 2.688794 GCGTCCTCGTCGGAGAAGT 61.689 63.158 0.00 0.00 44.20 3.01
1723 1748 2.584236 GGCTATCTCCTCGTACTCCAA 58.416 52.381 0.00 0.00 0.00 3.53
1914 1939 2.947785 ACGAGGAGGAGGACCCCT 60.948 66.667 1.40 1.40 38.78 4.79
2037 2062 4.309950 GGACGGCCTCCAACGTGT 62.310 66.667 0.00 0.00 44.24 4.49
2294 2320 3.842923 CGCTGATCCTCCACGCCT 61.843 66.667 0.00 0.00 0.00 5.52
2497 2530 0.959372 GAGAGGGAGGAACGACGACA 60.959 60.000 0.00 0.00 0.00 4.35
2499 2532 1.228490 AGGGAGGAACGACGACAGT 60.228 57.895 0.00 0.00 0.00 3.55
2700 2735 1.403249 GCAGCTTTGGCATTGATTCGT 60.403 47.619 0.00 0.00 41.70 3.85
2703 2738 1.135689 GCTTTGGCATTGATTCGTCGT 60.136 47.619 0.00 0.00 38.54 4.34
2849 2884 2.525629 TTCGGCCTGGGTCTGTCA 60.526 61.111 0.00 0.00 0.00 3.58
2850 2885 2.144078 TTCGGCCTGGGTCTGTCAA 61.144 57.895 0.00 0.00 0.00 3.18
2869 2905 3.758172 GCTGTTTTCGGCCCAAGA 58.242 55.556 0.00 0.00 45.68 3.02
2871 2907 1.452145 GCTGTTTTCGGCCCAAGACA 61.452 55.000 6.31 6.31 45.68 3.41
2889 2925 0.179084 CAGCGAAAATCGGGCTCCTA 60.179 55.000 1.64 0.00 40.84 2.94
3534 3622 5.300969 TGAAGCTGCACTAAATTTAGCTG 57.699 39.130 22.45 19.17 43.37 4.24
3996 4139 4.094590 CAGAAGGATGATTCAGAAGCACAC 59.905 45.833 2.45 0.00 0.00 3.82
4105 4248 6.912203 TTATTGCGCTTAACATTGTAGCTA 57.088 33.333 9.73 0.00 32.80 3.32
4185 4328 2.351835 CGAGGAAGAGTCGAGAGCAAAA 60.352 50.000 0.00 0.00 39.92 2.44
4233 4376 1.171308 CTTCACCGTCGAAGGGTCTA 58.829 55.000 21.73 3.69 39.01 2.59
4244 4387 5.392811 CGTCGAAGGGTCTAGTTTGATTACT 60.393 44.000 0.00 0.00 0.00 2.24
4440 4583 1.805345 GATGATAGTGATGCCAGCAGC 59.195 52.381 0.00 0.00 44.14 5.25
4836 4982 0.935942 TGGGATGGGCTGATTTGGAT 59.064 50.000 0.00 0.00 0.00 3.41
4872 5019 4.661222 TGGCTGTGATCCAAACATTCTTA 58.339 39.130 0.00 0.00 0.00 2.10
5061 5214 9.847224 TCACTAGAAGTCCATAAGAAAAACTTT 57.153 29.630 0.00 0.00 39.72 2.66
5185 5363 4.978083 ATTTCTAGGCTGTGCATTTCTG 57.022 40.909 0.00 0.00 0.00 3.02
5670 5850 5.483937 TGGATGCTAAGAGGAGTTTTGTAGA 59.516 40.000 0.00 0.00 0.00 2.59
5672 5852 5.801531 TGCTAAGAGGAGTTTTGTAGACA 57.198 39.130 0.00 0.00 0.00 3.41
6189 7280 8.610248 TCACGTTGATTAATTTTTCTCCTGTA 57.390 30.769 0.00 0.00 0.00 2.74
6360 7454 1.352083 TCCCTGGTTCCAACAGAGAG 58.648 55.000 0.00 0.00 38.20 3.20
6792 7908 4.141459 CCTGCATATCCATCTAGGCATGAT 60.141 45.833 0.00 0.00 37.72 2.45
7007 8178 2.192664 TGCCCGTTTTCTAGCATCAA 57.807 45.000 0.00 0.00 0.00 2.57
7380 8563 2.437200 CCAAAGCTGGCGAATTTTCA 57.563 45.000 0.00 0.00 35.39 2.69
7845 9041 4.104086 AGAGGGACATGGTCTACATTGAA 58.896 43.478 0.00 0.00 37.84 2.69
7846 9042 4.723789 AGAGGGACATGGTCTACATTGAAT 59.276 41.667 0.00 0.00 37.84 2.57
7858 9062 9.429109 TGGTCTACATTGAATACTACTCCAATA 57.571 33.333 0.00 0.00 0.00 1.90
7980 9184 2.922740 ATGCATTTTCCATGCCATCC 57.077 45.000 0.00 0.00 43.94 3.51
8185 9401 2.116772 AGCAACATGCCAGGCAGT 59.883 55.556 21.51 14.88 46.52 4.40
8275 9491 8.187480 TGTCGTTTATGGAATTATGTTGAATGG 58.813 33.333 0.00 0.00 0.00 3.16
8411 9628 7.064866 TCAATCAGAGCTAAAATTCCATGGAT 58.935 34.615 17.06 2.53 0.00 3.41
8413 9630 8.512956 CAATCAGAGCTAAAATTCCATGGATAG 58.487 37.037 17.06 14.98 0.00 2.08
8419 9636 1.149101 AATTCCATGGATAGGGGCGT 58.851 50.000 17.06 0.00 0.00 5.68
8424 9641 1.074471 ATGGATAGGGGCGTCACCT 60.074 57.895 5.94 5.94 42.15 4.00
8447 9664 1.336755 CCTAGCACCGCACAAACTTTT 59.663 47.619 0.00 0.00 0.00 2.27
8449 9666 1.102978 AGCACCGCACAAACTTTTCT 58.897 45.000 0.00 0.00 0.00 2.52
8451 9668 2.094234 AGCACCGCACAAACTTTTCTTT 60.094 40.909 0.00 0.00 0.00 2.52
8458 9675 3.490249 GCACAAACTTTTCTTTAGGCGGT 60.490 43.478 0.00 0.00 0.00 5.68
8558 9775 3.175710 ACCGGGTGAGTTTGGCCT 61.176 61.111 6.32 0.00 0.00 5.19
8560 9777 1.971695 CCGGGTGAGTTTGGCCTTC 60.972 63.158 3.32 0.00 0.00 3.46
8609 9826 2.037367 TCCTCACCGTCTCCCAGG 59.963 66.667 0.00 0.00 0.00 4.45
8610 9827 2.037367 CCTCACCGTCTCCCAGGA 59.963 66.667 0.00 0.00 0.00 3.86
8629 9846 0.757188 AGATGGAGAAGCCCGTCGAT 60.757 55.000 0.00 0.00 44.86 3.59
8789 10006 1.519751 TTGCCCGGTTTGGAATCGTG 61.520 55.000 0.00 0.00 42.00 4.35
8814 10031 4.686839 ACGCTTGCTCCTTTTTCTAATC 57.313 40.909 0.00 0.00 0.00 1.75
8815 10032 3.125316 ACGCTTGCTCCTTTTTCTAATCG 59.875 43.478 0.00 0.00 0.00 3.34
8817 10034 4.406943 GCTTGCTCCTTTTTCTAATCGTG 58.593 43.478 0.00 0.00 0.00 4.35
8818 10035 4.672801 GCTTGCTCCTTTTTCTAATCGTGG 60.673 45.833 0.00 0.00 0.00 4.94
8819 10036 3.343617 TGCTCCTTTTTCTAATCGTGGG 58.656 45.455 0.00 0.00 0.00 4.61
8820 10037 2.097629 GCTCCTTTTTCTAATCGTGGGC 59.902 50.000 0.00 0.00 0.00 5.36
8821 10038 3.610911 CTCCTTTTTCTAATCGTGGGCT 58.389 45.455 0.00 0.00 0.00 5.19
8822 10039 4.766375 CTCCTTTTTCTAATCGTGGGCTA 58.234 43.478 0.00 0.00 0.00 3.93
8823 10040 4.766375 TCCTTTTTCTAATCGTGGGCTAG 58.234 43.478 0.00 0.00 0.00 3.42
8824 10041 4.468510 TCCTTTTTCTAATCGTGGGCTAGA 59.531 41.667 0.00 0.00 0.00 2.43
8834 10059 9.403583 TCTAATCGTGGGCTAGATTTTATTTTT 57.596 29.630 0.00 0.00 38.04 1.94
8868 10094 7.195374 AGATTAGTTGTGGGCTAGATTTGTA 57.805 36.000 0.00 0.00 0.00 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.925379 TGTAGAACATGCCACTACAGTG 58.075 45.455 17.33 2.23 45.23 3.66
25 26 2.268762 TGCACTTGTAGAACATGCCA 57.731 45.000 0.00 0.00 34.22 4.92
26 27 2.351738 GGTTGCACTTGTAGAACATGCC 60.352 50.000 0.00 0.00 34.22 4.40
67 68 3.365364 GGCTTTGCTCTGTGTATGACAAC 60.365 47.826 0.00 0.00 32.80 3.32
107 108 2.737932 CTTGCAGGCGGTTGTTGCTC 62.738 60.000 0.00 0.00 38.60 4.26
114 115 2.034687 AGATGCTTGCAGGCGGTT 59.965 55.556 16.68 3.26 34.52 4.44
124 125 4.115199 GGGTGCCCCGAGATGCTT 62.115 66.667 0.00 0.00 32.13 3.91
161 162 4.278513 CCGGTCTGGGTTGGCCAA 62.279 66.667 16.05 16.05 36.17 4.52
212 213 4.643387 GCCCGTGGCTCTGGTGTT 62.643 66.667 7.58 0.00 46.69 3.32
303 304 4.235762 GATTCCTGGCCGCGGCTA 62.236 66.667 45.23 40.17 41.60 3.93
404 405 2.203153 GACGGTTGTGCCAGTGGT 60.203 61.111 11.74 0.00 36.97 4.16
458 459 0.255890 ATGCGGCAACCACCTAGAAT 59.744 50.000 6.82 0.00 0.00 2.40
462 463 2.270850 GGATGCGGCAACCACCTA 59.729 61.111 22.66 0.00 0.00 3.08
467 468 1.829533 ATCATGGGATGCGGCAACC 60.830 57.895 19.92 19.92 30.86 3.77
500 501 2.456577 GTCAGAGCTCTCTTCCTCCTT 58.543 52.381 14.96 0.00 37.98 3.36
501 502 1.681780 CGTCAGAGCTCTCTTCCTCCT 60.682 57.143 14.96 0.00 37.98 3.69
502 503 0.738389 CGTCAGAGCTCTCTTCCTCC 59.262 60.000 14.96 0.00 37.98 4.30
517 518 0.892358 AGTCGGTGTAGGAAGCGTCA 60.892 55.000 1.14 0.00 41.61 4.35
553 554 4.966787 GCCCCACCACTTTCGCCA 62.967 66.667 0.00 0.00 0.00 5.69
559 560 4.974721 CTTGCCGCCCCACCACTT 62.975 66.667 0.00 0.00 0.00 3.16
574 575 1.076438 CCCCCTCCAACCTCTTTCTT 58.924 55.000 0.00 0.00 0.00 2.52
594 595 3.345808 CGAACCCTGGCACACACG 61.346 66.667 0.00 0.00 0.00 4.49
618 619 1.298157 CCCGACAAGCTCATGCGAAA 61.298 55.000 0.00 0.00 45.42 3.46
664 665 4.030216 TCATCATGCTAAGGACCTACACA 58.970 43.478 0.00 0.00 0.00 3.72
668 669 5.957771 AAAGTCATCATGCTAAGGACCTA 57.042 39.130 0.00 0.00 0.00 3.08
669 670 4.851639 AAAGTCATCATGCTAAGGACCT 57.148 40.909 0.00 0.00 0.00 3.85
670 671 4.034510 CGAAAAGTCATCATGCTAAGGACC 59.965 45.833 0.00 0.00 0.00 4.46
671 672 4.870426 TCGAAAAGTCATCATGCTAAGGAC 59.130 41.667 0.00 0.00 0.00 3.85
672 673 4.870426 GTCGAAAAGTCATCATGCTAAGGA 59.130 41.667 0.00 0.00 0.00 3.36
673 674 4.872691 AGTCGAAAAGTCATCATGCTAAGG 59.127 41.667 0.00 0.00 0.00 2.69
674 675 5.578336 TCAGTCGAAAAGTCATCATGCTAAG 59.422 40.000 0.00 0.00 0.00 2.18
675 676 5.478407 TCAGTCGAAAAGTCATCATGCTAA 58.522 37.500 0.00 0.00 0.00 3.09
676 677 5.072040 TCAGTCGAAAAGTCATCATGCTA 57.928 39.130 0.00 0.00 0.00 3.49
677 678 3.930336 TCAGTCGAAAAGTCATCATGCT 58.070 40.909 0.00 0.00 0.00 3.79
678 679 3.681897 ACTCAGTCGAAAAGTCATCATGC 59.318 43.478 0.00 0.00 0.00 4.06
679 680 4.435253 GCACTCAGTCGAAAAGTCATCATG 60.435 45.833 0.00 0.00 0.00 3.07
680 681 3.681897 GCACTCAGTCGAAAAGTCATCAT 59.318 43.478 0.00 0.00 0.00 2.45
681 682 3.059884 GCACTCAGTCGAAAAGTCATCA 58.940 45.455 0.00 0.00 0.00 3.07
682 683 3.321497 AGCACTCAGTCGAAAAGTCATC 58.679 45.455 0.00 0.00 0.00 2.92
683 684 3.393089 AGCACTCAGTCGAAAAGTCAT 57.607 42.857 0.00 0.00 0.00 3.06
684 685 2.890808 AGCACTCAGTCGAAAAGTCA 57.109 45.000 0.00 0.00 0.00 3.41
685 686 3.639538 TGTAGCACTCAGTCGAAAAGTC 58.360 45.455 0.00 0.00 0.00 3.01
686 687 3.728076 TGTAGCACTCAGTCGAAAAGT 57.272 42.857 0.00 0.00 0.00 2.66
687 688 3.802139 TGTTGTAGCACTCAGTCGAAAAG 59.198 43.478 0.00 0.00 0.00 2.27
688 689 3.787785 TGTTGTAGCACTCAGTCGAAAA 58.212 40.909 0.00 0.00 0.00 2.29
689 690 3.446310 TGTTGTAGCACTCAGTCGAAA 57.554 42.857 0.00 0.00 0.00 3.46
690 691 3.381045 CTTGTTGTAGCACTCAGTCGAA 58.619 45.455 0.00 0.00 0.00 3.71
691 692 2.288213 CCTTGTTGTAGCACTCAGTCGA 60.288 50.000 0.00 0.00 0.00 4.20
692 693 2.061773 CCTTGTTGTAGCACTCAGTCG 58.938 52.381 0.00 0.00 0.00 4.18
693 694 3.060602 GACCTTGTTGTAGCACTCAGTC 58.939 50.000 0.00 0.00 0.00 3.51
694 695 2.700897 AGACCTTGTTGTAGCACTCAGT 59.299 45.455 0.00 0.00 0.00 3.41
695 696 3.393089 AGACCTTGTTGTAGCACTCAG 57.607 47.619 0.00 0.00 0.00 3.35
696 697 5.483685 AATAGACCTTGTTGTAGCACTCA 57.516 39.130 0.00 0.00 0.00 3.41
697 698 6.043411 CCTAATAGACCTTGTTGTAGCACTC 58.957 44.000 0.00 0.00 0.00 3.51
698 699 5.484290 ACCTAATAGACCTTGTTGTAGCACT 59.516 40.000 0.00 0.00 0.00 4.40
699 700 5.731591 ACCTAATAGACCTTGTTGTAGCAC 58.268 41.667 0.00 0.00 0.00 4.40
700 701 6.368779 AACCTAATAGACCTTGTTGTAGCA 57.631 37.500 0.00 0.00 0.00 3.49
701 702 5.816258 GGAACCTAATAGACCTTGTTGTAGC 59.184 44.000 0.00 0.00 0.00 3.58
702 703 6.040878 CGGAACCTAATAGACCTTGTTGTAG 58.959 44.000 0.00 0.00 0.00 2.74
703 704 5.716228 TCGGAACCTAATAGACCTTGTTGTA 59.284 40.000 0.00 0.00 0.00 2.41
704 705 4.529377 TCGGAACCTAATAGACCTTGTTGT 59.471 41.667 0.00 0.00 0.00 3.32
705 706 5.080969 TCGGAACCTAATAGACCTTGTTG 57.919 43.478 0.00 0.00 0.00 3.33
706 707 5.952347 ATCGGAACCTAATAGACCTTGTT 57.048 39.130 0.00 0.00 0.00 2.83
707 708 6.837568 TCTTATCGGAACCTAATAGACCTTGT 59.162 38.462 0.00 0.00 0.00 3.16
708 709 7.230913 TCTCTTATCGGAACCTAATAGACCTTG 59.769 40.741 0.00 0.00 0.00 3.61
709 710 7.296098 TCTCTTATCGGAACCTAATAGACCTT 58.704 38.462 0.00 0.00 0.00 3.50
710 711 6.850234 TCTCTTATCGGAACCTAATAGACCT 58.150 40.000 0.00 0.00 0.00 3.85
711 712 6.151480 CCTCTCTTATCGGAACCTAATAGACC 59.849 46.154 0.00 0.00 0.00 3.85
712 713 6.151480 CCCTCTCTTATCGGAACCTAATAGAC 59.849 46.154 0.00 0.00 0.00 2.59
713 714 6.045224 TCCCTCTCTTATCGGAACCTAATAGA 59.955 42.308 0.00 0.00 0.00 1.98
714 715 6.246919 TCCCTCTCTTATCGGAACCTAATAG 58.753 44.000 0.00 0.00 0.00 1.73
715 716 6.210172 TCCCTCTCTTATCGGAACCTAATA 57.790 41.667 0.00 0.00 0.00 0.98
716 717 5.076057 TCCCTCTCTTATCGGAACCTAAT 57.924 43.478 0.00 0.00 0.00 1.73
717 718 4.531357 TCCCTCTCTTATCGGAACCTAA 57.469 45.455 0.00 0.00 0.00 2.69
718 719 4.105858 TCATCCCTCTCTTATCGGAACCTA 59.894 45.833 0.00 0.00 0.00 3.08
719 720 3.117093 TCATCCCTCTCTTATCGGAACCT 60.117 47.826 0.00 0.00 0.00 3.50
720 721 3.231818 TCATCCCTCTCTTATCGGAACC 58.768 50.000 0.00 0.00 0.00 3.62
721 722 4.524714 TCATCATCCCTCTCTTATCGGAAC 59.475 45.833 0.00 0.00 0.00 3.62
722 723 4.524714 GTCATCATCCCTCTCTTATCGGAA 59.475 45.833 0.00 0.00 0.00 4.30
723 724 4.082845 GTCATCATCCCTCTCTTATCGGA 58.917 47.826 0.00 0.00 0.00 4.55
724 725 3.119673 CGTCATCATCCCTCTCTTATCGG 60.120 52.174 0.00 0.00 0.00 4.18
725 726 3.119673 CCGTCATCATCCCTCTCTTATCG 60.120 52.174 0.00 0.00 0.00 2.92
726 727 3.829601 ACCGTCATCATCCCTCTCTTATC 59.170 47.826 0.00 0.00 0.00 1.75
727 728 3.576118 CACCGTCATCATCCCTCTCTTAT 59.424 47.826 0.00 0.00 0.00 1.73
728 729 2.959030 CACCGTCATCATCCCTCTCTTA 59.041 50.000 0.00 0.00 0.00 2.10
729 730 1.759445 CACCGTCATCATCCCTCTCTT 59.241 52.381 0.00 0.00 0.00 2.85
730 731 1.407936 CACCGTCATCATCCCTCTCT 58.592 55.000 0.00 0.00 0.00 3.10
731 732 0.390860 CCACCGTCATCATCCCTCTC 59.609 60.000 0.00 0.00 0.00 3.20
732 733 1.690219 GCCACCGTCATCATCCCTCT 61.690 60.000 0.00 0.00 0.00 3.69
733 734 1.227674 GCCACCGTCATCATCCCTC 60.228 63.158 0.00 0.00 0.00 4.30
734 735 1.348008 ATGCCACCGTCATCATCCCT 61.348 55.000 0.00 0.00 0.00 4.20
735 736 1.149174 ATGCCACCGTCATCATCCC 59.851 57.895 0.00 0.00 0.00 3.85
736 737 0.179048 TCATGCCACCGTCATCATCC 60.179 55.000 0.00 0.00 0.00 3.51
737 738 0.940126 GTCATGCCACCGTCATCATC 59.060 55.000 0.00 0.00 0.00 2.92
738 739 0.543277 AGTCATGCCACCGTCATCAT 59.457 50.000 0.00 0.00 0.00 2.45
739 740 0.324614 AAGTCATGCCACCGTCATCA 59.675 50.000 0.00 0.00 0.00 3.07
740 741 1.131126 CAAAGTCATGCCACCGTCATC 59.869 52.381 0.00 0.00 0.00 2.92
741 742 1.167851 CAAAGTCATGCCACCGTCAT 58.832 50.000 0.00 0.00 0.00 3.06
742 743 0.888736 CCAAAGTCATGCCACCGTCA 60.889 55.000 0.00 0.00 0.00 4.35
743 744 1.875963 CCAAAGTCATGCCACCGTC 59.124 57.895 0.00 0.00 0.00 4.79
744 745 2.268076 GCCAAAGTCATGCCACCGT 61.268 57.895 0.00 0.00 0.00 4.83
745 746 1.926511 GAGCCAAAGTCATGCCACCG 61.927 60.000 0.00 0.00 0.00 4.94
746 747 1.885871 GAGCCAAAGTCATGCCACC 59.114 57.895 0.00 0.00 0.00 4.61
747 748 1.503542 CGAGCCAAAGTCATGCCAC 59.496 57.895 0.00 0.00 0.00 5.01
748 749 2.334946 GCGAGCCAAAGTCATGCCA 61.335 57.895 0.00 0.00 0.00 4.92
749 750 0.744414 TAGCGAGCCAAAGTCATGCC 60.744 55.000 0.00 0.00 0.00 4.40
750 751 1.003116 CATAGCGAGCCAAAGTCATGC 60.003 52.381 0.00 0.00 0.00 4.06
751 752 1.600957 CCATAGCGAGCCAAAGTCATG 59.399 52.381 0.00 0.00 0.00 3.07
752 753 1.210478 ACCATAGCGAGCCAAAGTCAT 59.790 47.619 0.00 0.00 0.00 3.06
753 754 0.613260 ACCATAGCGAGCCAAAGTCA 59.387 50.000 0.00 0.00 0.00 3.41
754 755 1.009829 CACCATAGCGAGCCAAAGTC 58.990 55.000 0.00 0.00 0.00 3.01
755 756 0.613260 TCACCATAGCGAGCCAAAGT 59.387 50.000 0.00 0.00 0.00 2.66
756 757 1.959042 ATCACCATAGCGAGCCAAAG 58.041 50.000 0.00 0.00 0.00 2.77
757 758 2.418368 AATCACCATAGCGAGCCAAA 57.582 45.000 0.00 0.00 0.00 3.28
758 759 3.769739 ATAATCACCATAGCGAGCCAA 57.230 42.857 0.00 0.00 0.00 4.52
759 760 3.832490 ACTATAATCACCATAGCGAGCCA 59.168 43.478 0.00 0.00 30.45 4.75
760 761 4.425520 GACTATAATCACCATAGCGAGCC 58.574 47.826 0.00 0.00 30.45 4.70
761 762 4.099120 CGACTATAATCACCATAGCGAGC 58.901 47.826 0.00 0.00 32.33 5.03
762 763 5.298197 ACGACTATAATCACCATAGCGAG 57.702 43.478 0.00 0.00 33.59 5.03
763 764 5.458015 CAACGACTATAATCACCATAGCGA 58.542 41.667 0.00 0.00 33.59 4.93
764 765 4.090066 GCAACGACTATAATCACCATAGCG 59.910 45.833 0.00 0.00 34.56 4.26
765 766 5.230942 AGCAACGACTATAATCACCATAGC 58.769 41.667 0.00 0.00 30.45 2.97
766 767 7.817641 TCTAGCAACGACTATAATCACCATAG 58.182 38.462 0.00 0.00 33.10 2.23
767 768 7.754851 TCTAGCAACGACTATAATCACCATA 57.245 36.000 0.00 0.00 0.00 2.74
768 769 6.650427 TCTAGCAACGACTATAATCACCAT 57.350 37.500 0.00 0.00 0.00 3.55
769 770 6.264518 TCATCTAGCAACGACTATAATCACCA 59.735 38.462 0.00 0.00 0.00 4.17
770 771 6.678878 TCATCTAGCAACGACTATAATCACC 58.321 40.000 0.00 0.00 0.00 4.02
771 772 8.240682 AGATCATCTAGCAACGACTATAATCAC 58.759 37.037 0.00 0.00 0.00 3.06
772 773 8.341892 AGATCATCTAGCAACGACTATAATCA 57.658 34.615 0.00 0.00 0.00 2.57
778 779 9.063615 TGTTTATAGATCATCTAGCAACGACTA 57.936 33.333 0.00 0.00 31.67 2.59
779 780 7.941919 TGTTTATAGATCATCTAGCAACGACT 58.058 34.615 0.00 0.00 31.67 4.18
780 781 8.749841 ATGTTTATAGATCATCTAGCAACGAC 57.250 34.615 0.00 0.00 31.67 4.34
781 782 9.196552 CAATGTTTATAGATCATCTAGCAACGA 57.803 33.333 0.00 0.00 31.67 3.85
782 783 8.438513 CCAATGTTTATAGATCATCTAGCAACG 58.561 37.037 0.00 0.00 31.67 4.10
783 784 9.494271 TCCAATGTTTATAGATCATCTAGCAAC 57.506 33.333 0.00 6.24 31.67 4.17
799 800 9.826574 ACGCTAGAACTATAAATCCAATGTTTA 57.173 29.630 0.00 0.00 0.00 2.01
800 801 8.732746 ACGCTAGAACTATAAATCCAATGTTT 57.267 30.769 0.00 0.00 0.00 2.83
801 802 8.732746 AACGCTAGAACTATAAATCCAATGTT 57.267 30.769 0.00 0.00 0.00 2.71
802 803 8.204836 AGAACGCTAGAACTATAAATCCAATGT 58.795 33.333 0.00 0.00 0.00 2.71
803 804 8.594881 AGAACGCTAGAACTATAAATCCAATG 57.405 34.615 0.00 0.00 0.00 2.82
804 805 9.614792 AAAGAACGCTAGAACTATAAATCCAAT 57.385 29.630 0.00 0.00 0.00 3.16
805 806 9.444600 AAAAGAACGCTAGAACTATAAATCCAA 57.555 29.630 0.00 0.00 0.00 3.53
806 807 9.444600 AAAAAGAACGCTAGAACTATAAATCCA 57.555 29.630 0.00 0.00 0.00 3.41
812 813 8.823818 GGCAATAAAAAGAACGCTAGAACTATA 58.176 33.333 0.00 0.00 0.00 1.31
813 814 7.335924 TGGCAATAAAAAGAACGCTAGAACTAT 59.664 33.333 0.00 0.00 0.00 2.12
814 815 6.651643 TGGCAATAAAAAGAACGCTAGAACTA 59.348 34.615 0.00 0.00 0.00 2.24
815 816 5.472137 TGGCAATAAAAAGAACGCTAGAACT 59.528 36.000 0.00 0.00 0.00 3.01
816 817 5.695818 TGGCAATAAAAAGAACGCTAGAAC 58.304 37.500 0.00 0.00 0.00 3.01
817 818 5.950758 TGGCAATAAAAAGAACGCTAGAA 57.049 34.783 0.00 0.00 0.00 2.10
818 819 6.072175 ACAATGGCAATAAAAAGAACGCTAGA 60.072 34.615 0.00 0.00 0.00 2.43
819 820 6.033831 CACAATGGCAATAAAAAGAACGCTAG 59.966 38.462 0.00 0.00 0.00 3.42
820 821 5.861251 CACAATGGCAATAAAAAGAACGCTA 59.139 36.000 0.00 0.00 0.00 4.26
821 822 4.685628 CACAATGGCAATAAAAAGAACGCT 59.314 37.500 0.00 0.00 0.00 5.07
822 823 4.447389 ACACAATGGCAATAAAAAGAACGC 59.553 37.500 0.00 0.00 0.00 4.84
823 824 7.665471 CATACACAATGGCAATAAAAAGAACG 58.335 34.615 0.00 0.00 31.38 3.95
838 839 6.469915 CGATTCATCAAACACCATACACAATG 59.530 38.462 0.00 0.00 35.15 2.82
839 840 6.374053 TCGATTCATCAAACACCATACACAAT 59.626 34.615 0.00 0.00 0.00 2.71
840 841 5.703130 TCGATTCATCAAACACCATACACAA 59.297 36.000 0.00 0.00 0.00 3.33
841 842 5.241662 TCGATTCATCAAACACCATACACA 58.758 37.500 0.00 0.00 0.00 3.72
842 843 5.794687 TCGATTCATCAAACACCATACAC 57.205 39.130 0.00 0.00 0.00 2.90
843 844 5.296531 CCATCGATTCATCAAACACCATACA 59.703 40.000 0.00 0.00 0.00 2.29
844 845 5.527214 TCCATCGATTCATCAAACACCATAC 59.473 40.000 0.00 0.00 0.00 2.39
845 846 5.679601 TCCATCGATTCATCAAACACCATA 58.320 37.500 0.00 0.00 0.00 2.74
846 847 4.525996 TCCATCGATTCATCAAACACCAT 58.474 39.130 0.00 0.00 0.00 3.55
847 848 3.949132 TCCATCGATTCATCAAACACCA 58.051 40.909 0.00 0.00 0.00 4.17
848 849 4.963276 TTCCATCGATTCATCAAACACC 57.037 40.909 0.00 0.00 0.00 4.16
849 850 7.253422 AGATTTTCCATCGATTCATCAAACAC 58.747 34.615 0.00 0.00 0.00 3.32
850 851 7.395190 AGATTTTCCATCGATTCATCAAACA 57.605 32.000 0.00 0.00 0.00 2.83
851 852 8.693542 AAAGATTTTCCATCGATTCATCAAAC 57.306 30.769 0.00 0.00 0.00 2.93
852 853 7.975616 GGAAAGATTTTCCATCGATTCATCAAA 59.024 33.333 14.13 0.00 38.45 2.69
853 854 7.483307 GGAAAGATTTTCCATCGATTCATCAA 58.517 34.615 14.13 0.00 38.45 2.57
854 855 6.238456 CGGAAAGATTTTCCATCGATTCATCA 60.238 38.462 17.89 0.00 38.49 3.07
855 856 6.017934 TCGGAAAGATTTTCCATCGATTCATC 60.018 38.462 17.89 0.00 38.49 2.92
856 857 5.822519 TCGGAAAGATTTTCCATCGATTCAT 59.177 36.000 17.89 0.00 38.49 2.57
857 858 5.182487 TCGGAAAGATTTTCCATCGATTCA 58.818 37.500 17.89 0.00 38.49 2.57
858 859 5.734855 TCGGAAAGATTTTCCATCGATTC 57.265 39.130 17.89 4.45 38.49 2.52
859 860 6.509418 TTTCGGAAAGATTTTCCATCGATT 57.491 33.333 17.89 0.00 38.49 3.34
860 861 6.509418 TTTTCGGAAAGATTTTCCATCGAT 57.491 33.333 17.89 0.00 38.49 3.59
861 862 5.950758 TTTTCGGAAAGATTTTCCATCGA 57.049 34.783 17.89 8.66 38.49 3.59
862 863 8.682128 TTATTTTTCGGAAAGATTTTCCATCG 57.318 30.769 17.89 6.81 38.49 3.84
863 864 9.855021 TCTTATTTTTCGGAAAGATTTTCCATC 57.145 29.630 17.89 0.00 38.49 3.51
865 866 9.855021 GATCTTATTTTTCGGAAAGATTTTCCA 57.145 29.630 17.89 5.39 38.47 3.53
866 867 9.855021 TGATCTTATTTTTCGGAAAGATTTTCC 57.145 29.630 11.19 9.94 38.47 3.13
890 891 9.531942 GTGGCATTGTTTTTGATAATCATATGA 57.468 29.630 8.10 8.10 0.00 2.15
891 892 8.481641 CGTGGCATTGTTTTTGATAATCATATG 58.518 33.333 0.00 0.00 0.00 1.78
892 893 8.196771 ACGTGGCATTGTTTTTGATAATCATAT 58.803 29.630 0.00 0.00 0.00 1.78
893 894 7.542890 ACGTGGCATTGTTTTTGATAATCATA 58.457 30.769 0.00 0.00 0.00 2.15
894 895 6.397272 ACGTGGCATTGTTTTTGATAATCAT 58.603 32.000 0.00 0.00 0.00 2.45
895 896 5.777802 ACGTGGCATTGTTTTTGATAATCA 58.222 33.333 0.00 0.00 0.00 2.57
896 897 6.400940 CCAACGTGGCATTGTTTTTGATAATC 60.401 38.462 5.47 0.00 0.00 1.75
897 898 5.407995 CCAACGTGGCATTGTTTTTGATAAT 59.592 36.000 5.47 0.00 0.00 1.28
898 899 4.747108 CCAACGTGGCATTGTTTTTGATAA 59.253 37.500 5.47 0.00 0.00 1.75
899 900 4.038042 TCCAACGTGGCATTGTTTTTGATA 59.962 37.500 5.47 0.00 37.47 2.15
900 901 3.129871 CCAACGTGGCATTGTTTTTGAT 58.870 40.909 5.47 0.00 0.00 2.57
901 902 2.166459 TCCAACGTGGCATTGTTTTTGA 59.834 40.909 5.47 1.70 37.47 2.69
902 903 2.544685 TCCAACGTGGCATTGTTTTTG 58.455 42.857 5.47 0.00 37.47 2.44
903 904 2.969628 TCCAACGTGGCATTGTTTTT 57.030 40.000 5.47 0.00 37.47 1.94
904 905 2.606795 CGATCCAACGTGGCATTGTTTT 60.607 45.455 5.47 0.00 37.47 2.43
905 906 1.068610 CGATCCAACGTGGCATTGTTT 60.069 47.619 5.47 0.00 37.47 2.83
906 907 0.521291 CGATCCAACGTGGCATTGTT 59.479 50.000 0.00 0.00 37.47 2.83
907 908 1.922135 GCGATCCAACGTGGCATTGT 61.922 55.000 0.00 0.00 37.47 2.71
908 909 1.226379 GCGATCCAACGTGGCATTG 60.226 57.895 0.00 0.00 37.47 2.82
909 910 0.107897 TAGCGATCCAACGTGGCATT 60.108 50.000 0.00 0.00 37.47 3.56
1015 1016 2.093890 CACATCCAATTGGCTAGCACA 58.906 47.619 20.33 9.44 34.44 4.57
1037 1038 1.971357 TGCGTTTTCTCTCCCTCTCTT 59.029 47.619 0.00 0.00 0.00 2.85
1057 1058 1.062886 TCTCTCTTGTCCCCATCCGAT 60.063 52.381 0.00 0.00 0.00 4.18
1062 1063 3.812167 GCTTTTGTCTCTCTTGTCCCCAT 60.812 47.826 0.00 0.00 0.00 4.00
1088 1089 2.409870 GGAAGCTGCGTGGGATTGG 61.410 63.158 0.00 0.00 0.00 3.16
1110 1111 0.972883 GCCCTAAGGAGATGCGAGAT 59.027 55.000 0.00 0.00 33.47 2.75
1393 1396 1.941975 TCGGTATGTAGAATCGCGTGA 59.058 47.619 5.77 0.00 0.00 4.35
1400 1403 1.887198 CGCCTCCTCGGTATGTAGAAT 59.113 52.381 0.00 0.00 34.25 2.40
1695 1720 3.224324 GGAGATAGCCCGGCGTGA 61.224 66.667 6.01 0.00 0.00 4.35
1847 1872 4.344865 GTCAAGCCGGAGCCCCAA 62.345 66.667 5.05 0.00 41.25 4.12
1870 1895 4.748798 CCCCCTGCCTCCACCTCT 62.749 72.222 0.00 0.00 0.00 3.69
1914 1939 3.838271 GAGGCGCATGGAGACCGA 61.838 66.667 10.83 0.00 0.00 4.69
2099 2124 4.003788 CTCGAGGCCACCAACGGT 62.004 66.667 5.01 0.00 35.62 4.83
2164 2189 3.404438 GGCCATGGTACGTCCCCA 61.404 66.667 14.67 9.11 36.16 4.96
2497 2530 1.361793 GCGACTCGTACTCTCTCACT 58.638 55.000 0.00 0.00 0.00 3.41
2499 2532 1.082679 CGGCGACTCGTACTCTCTCA 61.083 60.000 0.00 0.00 0.00 3.27
2619 2653 4.717629 CGGCGCAGTGAAGACCGA 62.718 66.667 10.83 0.00 46.71 4.69
2703 2738 1.218047 CTCATCGCCTCGTTTCCCA 59.782 57.895 0.00 0.00 0.00 4.37
2830 2865 2.526873 ACAGACCCAGGCCGAACT 60.527 61.111 0.00 0.00 0.00 3.01
2849 2884 2.070654 CTTGGGCCGAAAACAGCGTT 62.071 55.000 0.54 0.00 0.00 4.84
2850 2885 2.517402 TTGGGCCGAAAACAGCGT 60.517 55.556 0.00 0.00 0.00 5.07
2869 2905 1.745489 GGAGCCCGATTTTCGCTGT 60.745 57.895 0.00 0.00 38.82 4.40
2871 2907 0.105039 CTAGGAGCCCGATTTTCGCT 59.895 55.000 0.00 0.00 38.82 4.93
2896 2932 0.958382 CCGAAAAATCGGCCCAGTCA 60.958 55.000 4.12 0.00 46.76 3.41
3216 3290 1.107114 GCTTGGAGATGGAGACGAGA 58.893 55.000 0.00 0.00 0.00 4.04
3327 3403 6.544928 TTTCACTGATGCCTAAGAGTATGA 57.455 37.500 0.00 0.00 0.00 2.15
3368 3444 5.140747 AGTTGCCACAGAAGTAGAGTAAG 57.859 43.478 0.00 0.00 0.00 2.34
3534 3622 7.125113 CACCAATTGTTTTGATGTTACTTTGC 58.875 34.615 4.43 0.00 0.00 3.68
3804 3937 5.667466 TGTACCTAAGGATCCAAATCGAAC 58.333 41.667 15.82 4.43 32.24 3.95
3996 4139 1.398041 TGCGATTCTTGGCTTCATTCG 59.602 47.619 0.00 0.00 0.00 3.34
4105 4248 2.545952 CGGTCTCAAGTGTGTGCTTACT 60.546 50.000 0.00 0.00 0.00 2.24
4113 4256 1.226746 GGGAAACGGTCTCAAGTGTG 58.773 55.000 0.00 0.00 0.00 3.82
4185 4328 8.598041 CACATAGGATAGTAAAAGCCCTCTTAT 58.402 37.037 0.00 0.00 31.02 1.73
4244 4387 3.814283 TCGCATATAGCATTTGATGTGCA 59.186 39.130 0.69 0.00 46.13 4.57
4440 4583 3.603770 GGTTTTGAATTGCTTCATCGTCG 59.396 43.478 0.00 0.00 40.95 5.12
4791 4937 4.590647 TCTGATAGAAGGGAATCAAGCGAT 59.409 41.667 0.00 0.00 31.97 4.58
4848 4994 1.843368 ATGTTTGGATCACAGCCAGG 58.157 50.000 0.00 0.00 36.64 4.45
4872 5019 7.414222 ACTTGACTCATATCCAATGCAAAAT 57.586 32.000 0.00 0.00 0.00 1.82
5061 5214 6.901300 ACCAGAGTTAATCCTATGAAGTACCA 59.099 38.462 0.00 0.00 0.00 3.25
5694 5874 4.846779 AAAAATTAAACTCTGGCGCTGA 57.153 36.364 7.64 5.34 0.00 4.26
6241 7333 0.034476 CAGTGCAGAGCAGAGTTGGA 59.966 55.000 0.00 0.00 40.08 3.53
6792 7908 5.355071 GGACATAGTTCATGCAATCAAGTGA 59.645 40.000 0.00 0.00 38.29 3.41
7571 8757 7.756395 ATCGATCCAATTCAGCTATTTTCAT 57.244 32.000 0.00 0.00 0.00 2.57
7845 9041 6.490381 TCATTGACTCGCTATTGGAGTAGTAT 59.510 38.462 0.00 0.00 44.41 2.12
7846 9042 5.826208 TCATTGACTCGCTATTGGAGTAGTA 59.174 40.000 0.00 0.00 44.41 1.82
7858 9062 2.176273 GCGCCATCATTGACTCGCT 61.176 57.895 16.66 0.00 39.51 4.93
7893 9097 1.329256 GCCTTCCTCATCGCCTACTA 58.671 55.000 0.00 0.00 0.00 1.82
7980 9184 4.277174 AGAAGACATACAGAGATACAGCCG 59.723 45.833 0.00 0.00 0.00 5.52
8185 9401 1.142936 ATCCTAGGCATGATGGTGCA 58.857 50.000 2.96 0.00 46.81 4.57
8250 9466 8.188139 ACCATTCAACATAATTCCATAAACGAC 58.812 33.333 0.00 0.00 0.00 4.34
8275 9491 4.681744 TCTTCAAACATTCTGTTGGCAAC 58.318 39.130 23.12 23.12 40.14 4.17
8411 9628 0.630673 TAGGTAAGGTGACGCCCCTA 59.369 55.000 0.08 2.97 38.26 3.53
8413 9630 1.821258 CTAGGTAAGGTGACGCCCC 59.179 63.158 0.08 0.00 38.26 5.80
8419 9636 0.901114 TGCGGTGCTAGGTAAGGTGA 60.901 55.000 0.00 0.00 0.00 4.02
8424 9641 1.071071 AGTTTGTGCGGTGCTAGGTAA 59.929 47.619 0.00 0.00 0.00 2.85
8506 9723 1.375396 TTCACCCTGAATGCGACCG 60.375 57.895 0.00 0.00 30.26 4.79
8558 9775 0.035343 TCGAGCCTCGAGGAAGAGAA 60.035 55.000 35.69 11.40 44.82 2.87
8560 9777 4.227197 TCGAGCCTCGAGGAAGAG 57.773 61.111 35.69 20.83 44.82 2.85
8609 9826 1.066587 CGACGGGCTTCTCCATCTC 59.933 63.158 0.00 0.00 36.21 2.75
8610 9827 0.757188 ATCGACGGGCTTCTCCATCT 60.757 55.000 0.00 0.00 36.21 2.90
8614 9831 2.107141 CCATCGACGGGCTTCTCC 59.893 66.667 0.00 0.00 0.00 3.71
8681 9898 1.148759 GAGGAATCAGAGTTCGCGGC 61.149 60.000 6.13 0.00 0.00 6.53
8683 9900 1.272781 GTGAGGAATCAGAGTTCGCG 58.727 55.000 0.00 0.00 0.00 5.87
8789 10006 0.673985 AAAAAGGAGCAAGCGTTCCC 59.326 50.000 0.00 0.00 43.33 3.97
8842 10067 7.275920 ACAAATCTAGCCCACAACTAATCTAG 58.724 38.462 0.00 0.00 0.00 2.43
8847 10072 6.368779 AGTACAAATCTAGCCCACAACTAA 57.631 37.500 0.00 0.00 0.00 2.24
8849 10074 4.910458 AGTACAAATCTAGCCCACAACT 57.090 40.909 0.00 0.00 0.00 3.16
8850 10075 5.731591 AGTAGTACAAATCTAGCCCACAAC 58.268 41.667 2.52 0.00 0.00 3.32
8852 10077 7.670605 AATAGTAGTACAAATCTAGCCCACA 57.329 36.000 2.52 0.00 0.00 4.17
8853 10078 8.422566 AGAAATAGTAGTACAAATCTAGCCCAC 58.577 37.037 2.52 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.