Multiple sequence alignment - TraesCS4A01G220600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G220600 chr4A 100.000 3222 0 0 1 3222 524274502 524271281 0.000000e+00 5951.0
1 TraesCS4A01G220600 chr4A 88.737 950 81 14 2019 2944 190403299 190404246 0.000000e+00 1138.0
2 TraesCS4A01G220600 chr4A 83.451 284 19 10 2943 3200 190404572 190404853 4.150000e-59 239.0
3 TraesCS4A01G220600 chr6D 93.739 2971 102 19 312 3222 443283236 443280290 0.000000e+00 4379.0
4 TraesCS4A01G220600 chr6D 94.128 2282 80 11 316 2566 443266463 443264205 0.000000e+00 3422.0
5 TraesCS4A01G220600 chr1D 93.553 1970 80 16 1296 3222 49111144 49109179 0.000000e+00 2891.0
6 TraesCS4A01G220600 chr1D 88.968 281 16 1 986 1251 49111427 49111147 1.850000e-87 333.0
7 TraesCS4A01G220600 chr1D 89.617 183 18 1 1 182 400032065 400031883 6.950000e-57 231.0
8 TraesCS4A01G220600 chrUn 91.901 2062 77 29 312 2339 101224738 101222733 0.000000e+00 2800.0
9 TraesCS4A01G220600 chrUn 93.243 666 16 4 2584 3222 101222741 101222078 0.000000e+00 953.0
10 TraesCS4A01G220600 chr7D 94.647 1812 52 17 1454 3222 400201424 400199615 0.000000e+00 2767.0
11 TraesCS4A01G220600 chr7D 94.460 1733 49 8 1454 3143 488121204 488119476 0.000000e+00 2625.0
12 TraesCS4A01G220600 chr7D 92.108 1153 49 13 312 1445 493948482 493949611 0.000000e+00 1587.0
13 TraesCS4A01G220600 chr7D 93.054 835 30 5 487 1298 488122032 488121203 0.000000e+00 1195.0
14 TraesCS4A01G220600 chr7D 89.741 848 57 15 2108 2944 84437620 84438448 0.000000e+00 1057.0
15 TraesCS4A01G220600 chr7D 94.922 512 19 5 487 998 400202189 400201685 0.000000e+00 795.0
16 TraesCS4A01G220600 chr7D 97.872 188 4 0 1111 1298 400201610 400201423 3.100000e-85 326.0
17 TraesCS4A01G220600 chr7D 81.701 388 50 13 312 693 59727996 59728368 1.450000e-78 303.0
18 TraesCS4A01G220600 chr7D 87.978 183 21 1 1 182 397174436 397174618 7.000000e-52 215.0
19 TraesCS4A01G220600 chr7D 87.978 183 21 1 1 182 426819453 426819635 7.000000e-52 215.0
20 TraesCS4A01G220600 chr7D 87.568 185 22 1 1 184 254987891 254987707 2.520000e-51 213.0
21 TraesCS4A01G220600 chr7D 93.233 133 8 1 297 428 53744205 53744337 9.120000e-46 195.0
22 TraesCS4A01G220600 chr7D 91.729 133 9 2 297 428 584452786 584452655 1.970000e-42 183.0
23 TraesCS4A01G220600 chr3D 89.369 1157 98 8 696 1837 185654559 185655705 0.000000e+00 1432.0
24 TraesCS4A01G220600 chr5A 87.758 1209 112 18 812 2005 119024969 119026156 0.000000e+00 1380.0
25 TraesCS4A01G220600 chr2A 87.634 1213 112 19 812 2008 568235057 568233867 0.000000e+00 1375.0
26 TraesCS4A01G220600 chr2A 87.153 685 63 13 2019 2680 425829263 425829945 0.000000e+00 754.0
27 TraesCS4A01G220600 chr2A 85.106 282 16 8 2943 3200 425830661 425830940 6.850000e-67 265.0
28 TraesCS4A01G220600 chr2A 83.459 133 16 4 696 824 755377984 755378114 5.650000e-23 119.0
29 TraesCS4A01G220600 chr2A 79.651 172 19 13 823 987 157904614 157904776 3.400000e-20 110.0
30 TraesCS4A01G220600 chr4B 85.007 1354 130 31 696 2008 247557757 247556436 0.000000e+00 1308.0
31 TraesCS4A01G220600 chr2D 89.989 949 71 12 2019 2944 439659489 439658542 0.000000e+00 1205.0
32 TraesCS4A01G220600 chr2D 91.892 185 9 4 3020 3200 439658158 439657976 1.480000e-63 254.0
33 TraesCS4A01G220600 chr2D 88.525 183 20 1 1 182 571773985 571773803 1.500000e-53 220.0
34 TraesCS4A01G220600 chr2D 87.568 185 22 1 1 184 138691083 138690899 2.520000e-51 213.0
35 TraesCS4A01G220600 chr2D 90.152 132 12 1 312 442 407381984 407381853 1.540000e-38 171.0
36 TraesCS4A01G220600 chr7A 90.383 915 79 7 1091 2005 223982615 223983520 0.000000e+00 1194.0
37 TraesCS4A01G220600 chr3A 88.854 951 78 16 2019 2944 686266570 686265623 0.000000e+00 1144.0
38 TraesCS4A01G220600 chr3A 88.398 181 21 0 1 181 657334156 657333976 5.410000e-53 219.0
39 TraesCS4A01G220600 chr6A 88.124 741 53 17 2513 3220 311853274 311854012 0.000000e+00 848.0
40 TraesCS4A01G220600 chr7B 88.029 685 58 12 2019 2680 104513951 104514634 0.000000e+00 789.0
41 TraesCS4A01G220600 chr7B 85.106 282 16 5 2943 3200 104515350 104515629 6.850000e-67 265.0
42 TraesCS4A01G220600 chr7B 85.185 135 18 2 696 829 291569791 291569658 1.560000e-28 137.0
43 TraesCS4A01G220600 chr1B 80.732 410 33 20 312 693 136011028 136010637 8.800000e-71 278.0
44 TraesCS4A01G220600 chr1B 91.241 137 10 2 308 442 389086041 389086177 5.490000e-43 185.0
45 TraesCS4A01G220600 chr5B 80.049 411 51 19 312 702 248680070 248679671 3.170000e-70 276.0
46 TraesCS4A01G220600 chr5B 88.462 182 20 1 1 182 282649081 282649261 5.410000e-53 219.0
47 TraesCS4A01G220600 chr5B 94.792 96 4 1 599 693 253155730 253155825 7.200000e-32 148.0
48 TraesCS4A01G220600 chr5B 82.292 96 16 1 886 981 526254636 526254542 7.410000e-12 82.4
49 TraesCS4A01G220600 chr1A 84.752 282 17 8 2943 3200 244554271 244553992 3.190000e-65 259.0
50 TraesCS4A01G220600 chr1A 85.714 196 26 1 498 693 98578586 98578393 4.210000e-49 206.0
51 TraesCS4A01G220600 chr5D 87.568 185 22 1 1 184 420463357 420463541 2.520000e-51 213.0
52 TraesCS4A01G220600 chr4D 92.857 126 5 3 312 433 403164538 403164413 2.550000e-41 180.0
53 TraesCS4A01G220600 chr4D 92.063 126 6 4 312 433 311193447 311193322 1.190000e-39 174.0
54 TraesCS4A01G220600 chr4D 87.903 124 13 2 182 305 70578179 70578058 9.320000e-31 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G220600 chr4A 524271281 524274502 3221 True 5951.0 5951 100.000000 1 3222 1 chr4A.!!$R1 3221
1 TraesCS4A01G220600 chr4A 190403299 190404853 1554 False 688.5 1138 86.094000 2019 3200 2 chr4A.!!$F1 1181
2 TraesCS4A01G220600 chr6D 443280290 443283236 2946 True 4379.0 4379 93.739000 312 3222 1 chr6D.!!$R2 2910
3 TraesCS4A01G220600 chr6D 443264205 443266463 2258 True 3422.0 3422 94.128000 316 2566 1 chr6D.!!$R1 2250
4 TraesCS4A01G220600 chr1D 49109179 49111427 2248 True 1612.0 2891 91.260500 986 3222 2 chr1D.!!$R2 2236
5 TraesCS4A01G220600 chrUn 101222078 101224738 2660 True 1876.5 2800 92.572000 312 3222 2 chrUn.!!$R1 2910
6 TraesCS4A01G220600 chr7D 488119476 488122032 2556 True 1910.0 2625 93.757000 487 3143 2 chr7D.!!$R4 2656
7 TraesCS4A01G220600 chr7D 493948482 493949611 1129 False 1587.0 1587 92.108000 312 1445 1 chr7D.!!$F6 1133
8 TraesCS4A01G220600 chr7D 400199615 400202189 2574 True 1296.0 2767 95.813667 487 3222 3 chr7D.!!$R3 2735
9 TraesCS4A01G220600 chr7D 84437620 84438448 828 False 1057.0 1057 89.741000 2108 2944 1 chr7D.!!$F3 836
10 TraesCS4A01G220600 chr3D 185654559 185655705 1146 False 1432.0 1432 89.369000 696 1837 1 chr3D.!!$F1 1141
11 TraesCS4A01G220600 chr5A 119024969 119026156 1187 False 1380.0 1380 87.758000 812 2005 1 chr5A.!!$F1 1193
12 TraesCS4A01G220600 chr2A 568233867 568235057 1190 True 1375.0 1375 87.634000 812 2008 1 chr2A.!!$R1 1196
13 TraesCS4A01G220600 chr2A 425829263 425830940 1677 False 509.5 754 86.129500 2019 3200 2 chr2A.!!$F3 1181
14 TraesCS4A01G220600 chr4B 247556436 247557757 1321 True 1308.0 1308 85.007000 696 2008 1 chr4B.!!$R1 1312
15 TraesCS4A01G220600 chr2D 439657976 439659489 1513 True 729.5 1205 90.940500 2019 3200 2 chr2D.!!$R4 1181
16 TraesCS4A01G220600 chr7A 223982615 223983520 905 False 1194.0 1194 90.383000 1091 2005 1 chr7A.!!$F1 914
17 TraesCS4A01G220600 chr3A 686265623 686266570 947 True 1144.0 1144 88.854000 2019 2944 1 chr3A.!!$R2 925
18 TraesCS4A01G220600 chr6A 311853274 311854012 738 False 848.0 848 88.124000 2513 3220 1 chr6A.!!$F1 707
19 TraesCS4A01G220600 chr7B 104513951 104515629 1678 False 527.0 789 86.567500 2019 3200 2 chr7B.!!$F1 1181

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
475 480 0.110688 CACGCACGACTGTTCCATTG 60.111 55.0 0.0 0.0 0.00 2.82 F
1333 1388 0.184692 TGCCCTCATGGTGTTTGACA 59.815 50.0 0.0 0.0 36.04 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2082 2151 1.257743 CGTCCAAGAGTCCTCCTTGA 58.742 55.000 0.00 0.00 42.57 3.02 R
2539 2626 1.070914 GCACCCTAGGGATAAGACTGC 59.929 57.143 35.38 25.86 38.96 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.678921 CGATGTCCGCTTTATCCCA 57.321 52.632 0.00 0.00 0.00 4.37
30 31 1.948104 CGATGTCCGCTTTATCCCAA 58.052 50.000 0.00 0.00 0.00 4.12
31 32 2.285083 CGATGTCCGCTTTATCCCAAA 58.715 47.619 0.00 0.00 0.00 3.28
32 33 2.878406 CGATGTCCGCTTTATCCCAAAT 59.122 45.455 0.00 0.00 0.00 2.32
33 34 3.315191 CGATGTCCGCTTTATCCCAAATT 59.685 43.478 0.00 0.00 0.00 1.82
34 35 4.554723 CGATGTCCGCTTTATCCCAAATTC 60.555 45.833 0.00 0.00 0.00 2.17
35 36 2.680841 TGTCCGCTTTATCCCAAATTCG 59.319 45.455 0.00 0.00 0.00 3.34
36 37 2.940410 GTCCGCTTTATCCCAAATTCGA 59.060 45.455 0.00 0.00 0.00 3.71
37 38 3.564225 GTCCGCTTTATCCCAAATTCGAT 59.436 43.478 0.00 0.00 0.00 3.59
38 39 3.563808 TCCGCTTTATCCCAAATTCGATG 59.436 43.478 0.00 0.00 0.00 3.84
39 40 3.300009 CGCTTTATCCCAAATTCGATGC 58.700 45.455 0.00 0.00 0.00 3.91
40 41 3.243035 CGCTTTATCCCAAATTCGATGCA 60.243 43.478 0.00 0.00 0.00 3.96
41 42 4.681744 GCTTTATCCCAAATTCGATGCAA 58.318 39.130 0.00 0.00 0.00 4.08
42 43 4.741676 GCTTTATCCCAAATTCGATGCAAG 59.258 41.667 0.00 0.00 0.00 4.01
43 44 5.679638 GCTTTATCCCAAATTCGATGCAAGT 60.680 40.000 0.00 0.00 0.00 3.16
44 45 5.913137 TTATCCCAAATTCGATGCAAGTT 57.087 34.783 0.00 0.00 0.00 2.66
45 46 4.806640 ATCCCAAATTCGATGCAAGTTT 57.193 36.364 0.00 0.00 0.00 2.66
46 47 3.911868 TCCCAAATTCGATGCAAGTTTG 58.088 40.909 0.00 0.00 0.00 2.93
47 48 2.995258 CCCAAATTCGATGCAAGTTTGG 59.005 45.455 14.02 14.02 45.17 3.28
48 49 2.995258 CCAAATTCGATGCAAGTTTGGG 59.005 45.455 13.42 4.06 43.05 4.12
49 50 2.368655 AATTCGATGCAAGTTTGGGC 57.631 45.000 0.00 0.00 0.00 5.36
50 51 1.549203 ATTCGATGCAAGTTTGGGCT 58.451 45.000 0.00 0.00 0.00 5.19
51 52 0.597568 TTCGATGCAAGTTTGGGCTG 59.402 50.000 0.00 0.00 0.00 4.85
52 53 0.250684 TCGATGCAAGTTTGGGCTGA 60.251 50.000 0.00 0.00 0.00 4.26
53 54 0.169672 CGATGCAAGTTTGGGCTGAG 59.830 55.000 0.00 0.00 0.00 3.35
54 55 1.538047 GATGCAAGTTTGGGCTGAGA 58.462 50.000 0.00 0.00 0.00 3.27
55 56 2.097825 GATGCAAGTTTGGGCTGAGAT 58.902 47.619 0.00 0.00 0.00 2.75
56 57 1.250328 TGCAAGTTTGGGCTGAGATG 58.750 50.000 0.00 0.00 0.00 2.90
57 58 1.202915 TGCAAGTTTGGGCTGAGATGA 60.203 47.619 0.00 0.00 0.00 2.92
58 59 1.471684 GCAAGTTTGGGCTGAGATGAG 59.528 52.381 0.00 0.00 0.00 2.90
59 60 2.787994 CAAGTTTGGGCTGAGATGAGT 58.212 47.619 0.00 0.00 0.00 3.41
60 61 2.746362 CAAGTTTGGGCTGAGATGAGTC 59.254 50.000 0.00 0.00 0.00 3.36
61 62 1.066573 AGTTTGGGCTGAGATGAGTCG 60.067 52.381 0.00 0.00 0.00 4.18
62 63 1.066858 GTTTGGGCTGAGATGAGTCGA 60.067 52.381 0.00 0.00 0.00 4.20
63 64 1.266178 TTGGGCTGAGATGAGTCGAA 58.734 50.000 0.00 0.00 0.00 3.71
64 65 1.266178 TGGGCTGAGATGAGTCGAAA 58.734 50.000 0.00 0.00 0.00 3.46
65 66 1.623311 TGGGCTGAGATGAGTCGAAAA 59.377 47.619 0.00 0.00 0.00 2.29
66 67 2.003301 GGGCTGAGATGAGTCGAAAAC 58.997 52.381 0.00 0.00 0.00 2.43
67 68 1.656095 GGCTGAGATGAGTCGAAAACG 59.344 52.381 0.00 0.00 0.00 3.60
68 69 2.596452 GCTGAGATGAGTCGAAAACGA 58.404 47.619 0.00 0.00 0.00 3.85
69 70 2.987149 GCTGAGATGAGTCGAAAACGAA 59.013 45.455 0.00 0.00 0.00 3.85
70 71 3.181539 GCTGAGATGAGTCGAAAACGAAC 60.182 47.826 0.00 0.00 0.00 3.95
71 72 2.977829 TGAGATGAGTCGAAAACGAACG 59.022 45.455 0.00 0.00 0.00 3.95
72 73 2.325761 AGATGAGTCGAAAACGAACGG 58.674 47.619 0.00 0.00 0.00 4.44
73 74 2.030540 AGATGAGTCGAAAACGAACGGA 60.031 45.455 0.00 0.00 0.00 4.69
74 75 2.206815 TGAGTCGAAAACGAACGGAA 57.793 45.000 0.00 0.00 0.00 4.30
75 76 2.746269 TGAGTCGAAAACGAACGGAAT 58.254 42.857 0.00 0.00 0.00 3.01
76 77 2.727798 TGAGTCGAAAACGAACGGAATC 59.272 45.455 0.00 0.00 0.00 2.52
77 78 2.727798 GAGTCGAAAACGAACGGAATCA 59.272 45.455 0.00 0.00 0.00 2.57
78 79 2.729882 AGTCGAAAACGAACGGAATCAG 59.270 45.455 0.00 0.00 0.00 2.90
79 80 2.727798 GTCGAAAACGAACGGAATCAGA 59.272 45.455 0.00 0.00 0.00 3.27
80 81 3.182972 GTCGAAAACGAACGGAATCAGAA 59.817 43.478 0.00 0.00 0.00 3.02
81 82 3.182972 TCGAAAACGAACGGAATCAGAAC 59.817 43.478 0.00 0.00 0.00 3.01
82 83 3.060138 CGAAAACGAACGGAATCAGAACA 60.060 43.478 0.00 0.00 0.00 3.18
83 84 4.377022 CGAAAACGAACGGAATCAGAACAT 60.377 41.667 0.00 0.00 0.00 2.71
84 85 5.432885 AAAACGAACGGAATCAGAACATT 57.567 34.783 0.00 0.00 0.00 2.71
85 86 5.432885 AAACGAACGGAATCAGAACATTT 57.567 34.783 0.00 0.00 0.00 2.32
86 87 4.404507 ACGAACGGAATCAGAACATTTG 57.595 40.909 0.00 0.00 0.00 2.32
87 88 3.813166 ACGAACGGAATCAGAACATTTGT 59.187 39.130 0.00 0.00 0.00 2.83
88 89 4.084013 ACGAACGGAATCAGAACATTTGTC 60.084 41.667 0.00 0.00 0.00 3.18
89 90 4.669197 CGAACGGAATCAGAACATTTGTCC 60.669 45.833 0.00 0.00 0.00 4.02
90 91 3.389687 CGGAATCAGAACATTTGTCCG 57.610 47.619 0.00 0.00 40.40 4.79
91 92 2.742053 CGGAATCAGAACATTTGTCCGT 59.258 45.455 0.00 0.00 41.20 4.69
92 93 3.188460 CGGAATCAGAACATTTGTCCGTT 59.812 43.478 0.00 0.00 41.20 4.44
93 94 4.320202 CGGAATCAGAACATTTGTCCGTTT 60.320 41.667 0.00 0.00 41.20 3.60
94 95 4.917415 GGAATCAGAACATTTGTCCGTTTG 59.083 41.667 0.00 0.00 0.00 2.93
95 96 5.278266 GGAATCAGAACATTTGTCCGTTTGA 60.278 40.000 0.00 0.00 0.00 2.69
96 97 4.811555 TCAGAACATTTGTCCGTTTGAG 57.188 40.909 0.00 0.00 0.00 3.02
97 98 3.563808 TCAGAACATTTGTCCGTTTGAGG 59.436 43.478 0.00 0.00 0.00 3.86
98 99 2.293399 AGAACATTTGTCCGTTTGAGGC 59.707 45.455 0.00 0.00 0.00 4.70
99 100 0.958822 ACATTTGTCCGTTTGAGGCC 59.041 50.000 0.00 0.00 0.00 5.19
100 101 0.958091 CATTTGTCCGTTTGAGGCCA 59.042 50.000 5.01 0.00 0.00 5.36
101 102 0.958822 ATTTGTCCGTTTGAGGCCAC 59.041 50.000 5.01 0.00 0.00 5.01
102 103 1.440938 TTTGTCCGTTTGAGGCCACG 61.441 55.000 5.01 5.83 36.12 4.94
103 104 2.280592 GTCCGTTTGAGGCCACGT 60.281 61.111 5.01 0.00 34.47 4.49
104 105 2.280524 TCCGTTTGAGGCCACGTG 60.281 61.111 9.08 9.08 34.47 4.49
105 106 2.590575 CCGTTTGAGGCCACGTGT 60.591 61.111 15.65 0.00 34.47 4.49
106 107 2.184167 CCGTTTGAGGCCACGTGTT 61.184 57.895 15.65 0.00 34.47 3.32
107 108 1.010125 CGTTTGAGGCCACGTGTTG 60.010 57.895 15.65 0.51 0.00 3.33
119 120 3.131478 GTGTTGGGCCGCGCTATT 61.131 61.111 5.56 0.00 0.00 1.73
120 121 2.822255 TGTTGGGCCGCGCTATTC 60.822 61.111 5.56 0.00 0.00 1.75
121 122 3.937062 GTTGGGCCGCGCTATTCG 61.937 66.667 5.56 0.00 42.12 3.34
122 123 4.460683 TTGGGCCGCGCTATTCGT 62.461 61.111 5.56 0.00 41.07 3.85
123 124 4.884257 TGGGCCGCGCTATTCGTC 62.884 66.667 5.56 0.00 41.07 4.20
127 128 2.581409 CCGCGCTATTCGTCCGTT 60.581 61.111 5.56 0.00 41.07 4.44
128 129 2.574222 CCGCGCTATTCGTCCGTTC 61.574 63.158 5.56 0.00 41.07 3.95
129 130 1.585521 CGCGCTATTCGTCCGTTCT 60.586 57.895 5.56 0.00 41.07 3.01
130 131 0.316442 CGCGCTATTCGTCCGTTCTA 60.316 55.000 5.56 0.00 41.07 2.10
131 132 1.118833 GCGCTATTCGTCCGTTCTAC 58.881 55.000 0.00 0.00 41.07 2.59
132 133 1.751552 CGCTATTCGTCCGTTCTACC 58.248 55.000 0.00 0.00 0.00 3.18
133 134 1.598924 CGCTATTCGTCCGTTCTACCC 60.599 57.143 0.00 0.00 0.00 3.69
134 135 1.269465 GCTATTCGTCCGTTCTACCCC 60.269 57.143 0.00 0.00 0.00 4.95
135 136 2.026641 CTATTCGTCCGTTCTACCCCA 58.973 52.381 0.00 0.00 0.00 4.96
136 137 1.269012 ATTCGTCCGTTCTACCCCAA 58.731 50.000 0.00 0.00 0.00 4.12
137 138 1.047002 TTCGTCCGTTCTACCCCAAA 58.953 50.000 0.00 0.00 0.00 3.28
138 139 0.318120 TCGTCCGTTCTACCCCAAAC 59.682 55.000 0.00 0.00 0.00 2.93
139 140 1.010419 CGTCCGTTCTACCCCAAACG 61.010 60.000 0.93 0.93 45.83 3.60
142 143 2.831597 CGTTCTACCCCAAACGGAC 58.168 57.895 0.00 0.00 43.31 4.79
143 144 1.010419 CGTTCTACCCCAAACGGACG 61.010 60.000 0.00 0.00 43.31 4.79
144 145 1.004679 TTCTACCCCAAACGGACGC 60.005 57.895 0.00 0.00 0.00 5.19
145 146 1.756408 TTCTACCCCAAACGGACGCA 61.756 55.000 0.00 0.00 0.00 5.24
146 147 1.078708 CTACCCCAAACGGACGCAT 60.079 57.895 0.00 0.00 0.00 4.73
147 148 1.078988 TACCCCAAACGGACGCATC 60.079 57.895 0.00 0.00 0.00 3.91
148 149 2.524951 TACCCCAAACGGACGCATCC 62.525 60.000 0.00 0.00 42.28 3.51
158 159 1.714794 GGACGCATCCGGATAAGATG 58.285 55.000 18.63 7.19 43.31 2.90
159 160 1.673033 GGACGCATCCGGATAAGATGG 60.673 57.143 18.63 4.57 41.22 3.51
160 161 3.143675 CGCATCCGGATAAGATGGG 57.856 57.895 18.63 10.77 44.82 4.00
161 162 0.391661 CGCATCCGGATAAGATGGGG 60.392 60.000 18.63 8.26 45.80 4.96
162 163 0.693049 GCATCCGGATAAGATGGGGT 59.307 55.000 18.63 0.00 41.22 4.95
163 164 1.339151 GCATCCGGATAAGATGGGGTC 60.339 57.143 18.63 0.00 41.22 4.46
164 165 1.066858 CATCCGGATAAGATGGGGTCG 60.067 57.143 18.63 0.00 37.96 4.79
165 166 1.004918 CCGGATAAGATGGGGTCGC 60.005 63.158 0.00 0.00 0.00 5.19
166 167 1.372997 CGGATAAGATGGGGTCGCG 60.373 63.158 0.00 0.00 0.00 5.87
167 168 1.668151 GGATAAGATGGGGTCGCGC 60.668 63.158 0.00 0.00 0.00 6.86
168 169 2.022129 GATAAGATGGGGTCGCGCG 61.022 63.158 26.76 26.76 0.00 6.86
169 170 2.416244 GATAAGATGGGGTCGCGCGA 62.416 60.000 31.40 31.40 0.00 5.87
170 171 1.816863 ATAAGATGGGGTCGCGCGAT 61.817 55.000 37.03 20.33 0.00 4.58
171 172 2.693250 TAAGATGGGGTCGCGCGATG 62.693 60.000 37.03 4.79 0.00 3.84
176 177 4.814294 GGGTCGCGCGATGGAGTT 62.814 66.667 37.03 0.00 0.00 3.01
177 178 3.554692 GGTCGCGCGATGGAGTTG 61.555 66.667 37.03 0.27 0.00 3.16
178 179 3.554692 GTCGCGCGATGGAGTTGG 61.555 66.667 37.03 0.00 0.00 3.77
182 183 2.436646 CGCGATGGAGTTGGCCTT 60.437 61.111 0.00 0.00 0.00 4.35
183 184 1.153449 CGCGATGGAGTTGGCCTTA 60.153 57.895 0.00 0.00 0.00 2.69
184 185 0.532862 CGCGATGGAGTTGGCCTTAT 60.533 55.000 0.00 0.00 0.00 1.73
185 186 1.680338 GCGATGGAGTTGGCCTTATT 58.320 50.000 3.32 0.00 0.00 1.40
186 187 1.604278 GCGATGGAGTTGGCCTTATTC 59.396 52.381 3.32 0.00 0.00 1.75
187 188 2.222027 CGATGGAGTTGGCCTTATTCC 58.778 52.381 3.32 8.64 0.00 3.01
188 189 2.158755 CGATGGAGTTGGCCTTATTCCT 60.159 50.000 16.85 6.60 0.00 3.36
189 190 2.806945 TGGAGTTGGCCTTATTCCTG 57.193 50.000 16.85 0.00 0.00 3.86
190 191 2.274542 TGGAGTTGGCCTTATTCCTGA 58.725 47.619 16.85 0.64 0.00 3.86
191 192 2.239654 TGGAGTTGGCCTTATTCCTGAG 59.760 50.000 16.85 0.00 0.00 3.35
192 193 2.505819 GGAGTTGGCCTTATTCCTGAGA 59.494 50.000 3.32 0.00 0.00 3.27
193 194 3.137360 GGAGTTGGCCTTATTCCTGAGAT 59.863 47.826 3.32 0.00 0.00 2.75
194 195 4.385754 GGAGTTGGCCTTATTCCTGAGATT 60.386 45.833 3.32 0.00 0.00 2.40
195 196 4.530875 AGTTGGCCTTATTCCTGAGATTG 58.469 43.478 3.32 0.00 0.00 2.67
196 197 4.228210 AGTTGGCCTTATTCCTGAGATTGA 59.772 41.667 3.32 0.00 0.00 2.57
197 198 4.860802 TGGCCTTATTCCTGAGATTGAA 57.139 40.909 3.32 0.00 0.00 2.69
198 199 5.393068 TGGCCTTATTCCTGAGATTGAAT 57.607 39.130 3.32 0.00 35.48 2.57
199 200 5.135383 TGGCCTTATTCCTGAGATTGAATG 58.865 41.667 3.32 0.00 33.46 2.67
200 201 5.103982 TGGCCTTATTCCTGAGATTGAATGA 60.104 40.000 3.32 0.00 33.46 2.57
201 202 6.008960 GGCCTTATTCCTGAGATTGAATGAT 58.991 40.000 0.00 0.00 33.46 2.45
202 203 6.150809 GGCCTTATTCCTGAGATTGAATGATC 59.849 42.308 0.00 0.00 33.46 2.92
203 204 6.713903 GCCTTATTCCTGAGATTGAATGATCA 59.286 38.462 0.00 0.00 33.46 2.92
204 205 7.094720 GCCTTATTCCTGAGATTGAATGATCAG 60.095 40.741 0.09 9.08 39.10 2.90
205 206 7.094720 CCTTATTCCTGAGATTGAATGATCAGC 60.095 40.741 0.09 0.00 38.26 4.26
206 207 5.369409 TTCCTGAGATTGAATGATCAGCT 57.631 39.130 0.09 0.00 38.26 4.24
207 208 4.958509 TCCTGAGATTGAATGATCAGCTC 58.041 43.478 0.09 0.90 38.26 4.09
208 209 3.741856 CCTGAGATTGAATGATCAGCTCG 59.258 47.826 0.09 0.00 39.63 5.03
209 210 4.370049 CTGAGATTGAATGATCAGCTCGT 58.630 43.478 0.09 0.00 39.63 4.18
210 211 4.117685 TGAGATTGAATGATCAGCTCGTG 58.882 43.478 0.09 0.00 39.63 4.35
211 212 3.464907 AGATTGAATGATCAGCTCGTGG 58.535 45.455 0.09 0.00 36.78 4.94
212 213 3.133542 AGATTGAATGATCAGCTCGTGGA 59.866 43.478 0.09 0.00 36.78 4.02
213 214 3.333029 TTGAATGATCAGCTCGTGGAA 57.667 42.857 0.09 0.00 36.78 3.53
214 215 2.897436 TGAATGATCAGCTCGTGGAAG 58.103 47.619 0.09 0.00 0.00 3.46
215 216 2.497273 TGAATGATCAGCTCGTGGAAGA 59.503 45.455 0.09 0.00 0.00 2.87
216 217 2.593346 ATGATCAGCTCGTGGAAGAC 57.407 50.000 0.09 0.00 0.00 3.01
217 218 1.550327 TGATCAGCTCGTGGAAGACT 58.450 50.000 0.00 0.00 0.00 3.24
218 219 1.895798 TGATCAGCTCGTGGAAGACTT 59.104 47.619 0.00 0.00 0.00 3.01
219 220 2.266554 GATCAGCTCGTGGAAGACTTG 58.733 52.381 0.00 0.00 0.00 3.16
220 221 0.319900 TCAGCTCGTGGAAGACTTGC 60.320 55.000 0.00 0.00 0.00 4.01
221 222 0.601046 CAGCTCGTGGAAGACTTGCA 60.601 55.000 5.14 5.14 0.00 4.08
222 223 0.322975 AGCTCGTGGAAGACTTGCAT 59.677 50.000 12.87 0.00 32.24 3.96
223 224 0.445436 GCTCGTGGAAGACTTGCATG 59.555 55.000 19.75 19.75 39.11 4.06
224 225 1.081892 CTCGTGGAAGACTTGCATGG 58.918 55.000 23.76 14.36 38.39 3.66
225 226 0.321564 TCGTGGAAGACTTGCATGGG 60.322 55.000 23.76 12.27 38.39 4.00
226 227 1.885871 GTGGAAGACTTGCATGGGC 59.114 57.895 12.87 0.00 41.68 5.36
227 228 1.675310 TGGAAGACTTGCATGGGCG 60.675 57.895 5.14 0.00 45.35 6.13
228 229 1.675641 GGAAGACTTGCATGGGCGT 60.676 57.895 1.24 0.00 45.35 5.68
229 230 1.503542 GAAGACTTGCATGGGCGTG 59.496 57.895 4.44 0.00 45.35 5.34
230 231 1.228245 AAGACTTGCATGGGCGTGT 60.228 52.632 4.44 0.00 45.35 4.49
231 232 0.823356 AAGACTTGCATGGGCGTGTT 60.823 50.000 4.44 0.00 45.35 3.32
232 233 1.210155 GACTTGCATGGGCGTGTTC 59.790 57.895 4.44 0.00 45.35 3.18
233 234 1.514678 GACTTGCATGGGCGTGTTCA 61.515 55.000 4.44 0.00 45.35 3.18
234 235 1.081242 CTTGCATGGGCGTGTTCAC 60.081 57.895 0.00 0.00 45.35 3.18
235 236 1.518056 CTTGCATGGGCGTGTTCACT 61.518 55.000 0.00 0.00 45.35 3.41
236 237 1.514678 TTGCATGGGCGTGTTCACTC 61.515 55.000 0.00 0.00 45.35 3.51
237 238 1.672356 GCATGGGCGTGTTCACTCT 60.672 57.895 0.00 0.00 0.00 3.24
238 239 0.391130 GCATGGGCGTGTTCACTCTA 60.391 55.000 0.00 0.00 0.00 2.43
239 240 1.359848 CATGGGCGTGTTCACTCTAC 58.640 55.000 1.53 0.00 0.00 2.59
240 241 0.973632 ATGGGCGTGTTCACTCTACA 59.026 50.000 1.53 0.00 0.00 2.74
241 242 0.753867 TGGGCGTGTTCACTCTACAA 59.246 50.000 1.53 0.00 0.00 2.41
242 243 1.139256 TGGGCGTGTTCACTCTACAAA 59.861 47.619 1.53 0.00 0.00 2.83
243 244 2.215196 GGGCGTGTTCACTCTACAAAA 58.785 47.619 1.53 0.00 0.00 2.44
244 245 2.812011 GGGCGTGTTCACTCTACAAAAT 59.188 45.455 1.53 0.00 0.00 1.82
245 246 3.252458 GGGCGTGTTCACTCTACAAAATT 59.748 43.478 1.53 0.00 0.00 1.82
246 247 4.261447 GGGCGTGTTCACTCTACAAAATTT 60.261 41.667 1.53 0.00 0.00 1.82
247 248 5.278604 GGCGTGTTCACTCTACAAAATTTT 58.721 37.500 0.00 0.00 0.00 1.82
248 249 5.173131 GGCGTGTTCACTCTACAAAATTTTG 59.827 40.000 25.73 25.73 43.62 2.44
249 250 5.331532 GCGTGTTCACTCTACAAAATTTTGC 60.332 40.000 26.94 10.68 41.79 3.68
250 251 5.741510 CGTGTTCACTCTACAAAATTTTGCA 59.258 36.000 26.94 16.03 41.79 4.08
251 252 6.252441 CGTGTTCACTCTACAAAATTTTGCAA 59.748 34.615 26.94 16.19 41.79 4.08
252 253 7.043458 CGTGTTCACTCTACAAAATTTTGCAAT 60.043 33.333 26.94 13.06 41.79 3.56
253 254 8.603181 GTGTTCACTCTACAAAATTTTGCAATT 58.397 29.630 26.94 12.74 41.79 2.32
254 255 9.160496 TGTTCACTCTACAAAATTTTGCAATTT 57.840 25.926 26.94 12.40 43.29 1.82
271 272 9.801873 TTTGCAATTTAGAATTTATGCTACCTC 57.198 29.630 0.00 0.00 34.97 3.85
272 273 8.752005 TGCAATTTAGAATTTATGCTACCTCT 57.248 30.769 0.00 0.00 34.97 3.69
273 274 9.189156 TGCAATTTAGAATTTATGCTACCTCTT 57.811 29.630 0.00 0.00 34.97 2.85
274 275 9.455847 GCAATTTAGAATTTATGCTACCTCTTG 57.544 33.333 0.00 0.00 0.00 3.02
278 279 9.733556 TTTAGAATTTATGCTACCTCTTGTTGA 57.266 29.630 0.00 0.00 0.00 3.18
279 280 7.617041 AGAATTTATGCTACCTCTTGTTGAC 57.383 36.000 0.00 0.00 0.00 3.18
280 281 6.313905 AGAATTTATGCTACCTCTTGTTGACG 59.686 38.462 0.00 0.00 0.00 4.35
281 282 1.726853 ATGCTACCTCTTGTTGACGC 58.273 50.000 0.00 0.00 0.00 5.19
282 283 0.391228 TGCTACCTCTTGTTGACGCA 59.609 50.000 0.00 0.00 0.00 5.24
283 284 0.790814 GCTACCTCTTGTTGACGCAC 59.209 55.000 0.00 0.00 0.00 5.34
284 285 1.872237 GCTACCTCTTGTTGACGCACA 60.872 52.381 0.00 0.00 0.00 4.57
285 286 2.479837 CTACCTCTTGTTGACGCACAA 58.520 47.619 0.00 0.00 35.33 3.33
286 287 1.745232 ACCTCTTGTTGACGCACAAA 58.255 45.000 0.00 0.00 40.36 2.83
287 288 2.088423 ACCTCTTGTTGACGCACAAAA 58.912 42.857 0.00 0.00 40.36 2.44
288 289 2.687935 ACCTCTTGTTGACGCACAAAAT 59.312 40.909 0.00 0.00 40.36 1.82
289 290 3.243068 ACCTCTTGTTGACGCACAAAATC 60.243 43.478 0.00 0.00 40.36 2.17
290 291 3.003689 CCTCTTGTTGACGCACAAAATCT 59.996 43.478 0.00 0.00 40.36 2.40
291 292 4.213270 CCTCTTGTTGACGCACAAAATCTA 59.787 41.667 0.00 0.00 40.36 1.98
292 293 5.106555 CCTCTTGTTGACGCACAAAATCTAT 60.107 40.000 0.00 0.00 40.36 1.98
293 294 6.312399 TCTTGTTGACGCACAAAATCTATT 57.688 33.333 0.00 0.00 40.36 1.73
294 295 6.370593 TCTTGTTGACGCACAAAATCTATTC 58.629 36.000 0.00 0.00 40.36 1.75
295 296 5.041951 TGTTGACGCACAAAATCTATTCC 57.958 39.130 0.00 0.00 40.36 3.01
296 297 4.759693 TGTTGACGCACAAAATCTATTCCT 59.240 37.500 0.00 0.00 40.36 3.36
297 298 5.935206 TGTTGACGCACAAAATCTATTCCTA 59.065 36.000 0.00 0.00 40.36 2.94
298 299 6.428465 TGTTGACGCACAAAATCTATTCCTAA 59.572 34.615 0.00 0.00 40.36 2.69
299 300 7.120579 TGTTGACGCACAAAATCTATTCCTAAT 59.879 33.333 0.00 0.00 40.36 1.73
300 301 8.609176 GTTGACGCACAAAATCTATTCCTAATA 58.391 33.333 0.00 0.00 40.36 0.98
301 302 8.725405 TGACGCACAAAATCTATTCCTAATAA 57.275 30.769 0.00 0.00 0.00 1.40
302 303 9.337396 TGACGCACAAAATCTATTCCTAATAAT 57.663 29.630 0.00 0.00 0.00 1.28
423 428 5.888982 ATTTTCTACATCCGAGGTGGTAT 57.111 39.130 0.00 0.00 39.52 2.73
424 429 5.687166 TTTTCTACATCCGAGGTGGTATT 57.313 39.130 0.00 0.00 39.52 1.89
425 430 6.795144 TTTTCTACATCCGAGGTGGTATTA 57.205 37.500 0.00 0.00 39.52 0.98
426 431 6.989155 TTTCTACATCCGAGGTGGTATTAT 57.011 37.500 0.00 0.00 39.52 1.28
427 432 6.989155 TTCTACATCCGAGGTGGTATTATT 57.011 37.500 0.00 0.00 39.52 1.40
428 433 6.585695 TCTACATCCGAGGTGGTATTATTC 57.414 41.667 0.00 0.00 39.52 1.75
429 434 6.072649 TCTACATCCGAGGTGGTATTATTCA 58.927 40.000 0.00 0.00 39.52 2.57
430 435 5.825593 ACATCCGAGGTGGTATTATTCAT 57.174 39.130 0.00 0.00 39.52 2.57
431 436 5.551233 ACATCCGAGGTGGTATTATTCATG 58.449 41.667 0.00 0.00 39.52 3.07
472 477 2.279851 CCACGCACGACTGTTCCA 60.280 61.111 0.00 0.00 0.00 3.53
473 478 1.667830 CCACGCACGACTGTTCCAT 60.668 57.895 0.00 0.00 0.00 3.41
474 479 1.227999 CCACGCACGACTGTTCCATT 61.228 55.000 0.00 0.00 0.00 3.16
475 480 0.110688 CACGCACGACTGTTCCATTG 60.111 55.000 0.00 0.00 0.00 2.82
476 481 0.531974 ACGCACGACTGTTCCATTGT 60.532 50.000 0.00 0.00 0.00 2.71
477 482 0.586319 CGCACGACTGTTCCATTGTT 59.414 50.000 0.00 0.00 0.00 2.83
478 483 1.398451 CGCACGACTGTTCCATTGTTC 60.398 52.381 0.00 0.00 0.00 3.18
479 484 1.069227 GCACGACTGTTCCATTGTTCC 60.069 52.381 0.00 0.00 0.00 3.62
480 485 2.217750 CACGACTGTTCCATTGTTCCA 58.782 47.619 0.00 0.00 0.00 3.53
483 488 4.454161 CACGACTGTTCCATTGTTCCATTA 59.546 41.667 0.00 0.00 0.00 1.90
498 503 2.006888 CCATTATTCCACGCACGACTT 58.993 47.619 0.00 0.00 0.00 3.01
548 553 5.482686 AGAAGCGTTTTGGTACGTAAAAA 57.517 34.783 0.00 0.00 43.22 1.94
573 578 1.314730 TCCACGAACAGGAAAAAGGC 58.685 50.000 0.00 0.00 30.71 4.35
596 601 0.809385 GATCAAGGACACGAGACGGA 59.191 55.000 0.00 0.00 0.00 4.69
604 609 1.154263 CACGAGACGGAACCGAGTC 60.154 63.158 20.14 13.38 42.83 3.36
623 628 1.947456 TCGACGTCCATCGAGATCAAT 59.053 47.619 10.58 0.00 45.84 2.57
879 903 1.872237 CGACAAGCGACAAAGGAAGGA 60.872 52.381 0.00 0.00 44.57 3.36
1003 1027 4.794439 CGGACGACAGCGCCATGA 62.794 66.667 2.29 0.00 42.48 3.07
1209 1264 1.391485 CTCAATGGCGTTGACTCTTCG 59.609 52.381 17.86 4.06 41.79 3.79
1251 1306 0.393537 GCCAGGCAGCATAACACTCT 60.394 55.000 6.55 0.00 0.00 3.24
1333 1388 0.184692 TGCCCTCATGGTGTTTGACA 59.815 50.000 0.00 0.00 36.04 3.58
1439 1494 3.728845 TGGTTCTCTTTCTCGTTCCTTG 58.271 45.455 0.00 0.00 0.00 3.61
1757 1815 5.189625 CGCACACAAAACATTTGTTGAATC 58.810 37.500 5.77 0.00 38.44 2.52
1759 1817 6.541086 GCACACAAAACATTTGTTGAATCAA 58.459 32.000 5.77 0.00 38.44 2.57
1814 1872 1.133790 GCTCCAAGTCATCAACCATGC 59.866 52.381 0.00 0.00 31.70 4.06
2082 2151 4.175337 CCGGGATGGCGATGGTGT 62.175 66.667 0.00 0.00 0.00 4.16
2209 2281 7.152645 TCCTAACAGAACTATTCTTGTGTCAC 58.847 38.462 0.00 0.00 38.11 3.67
2216 2288 2.586648 ATTCTTGTGTCACCCCCTTC 57.413 50.000 0.00 0.00 0.00 3.46
2304 2390 1.002087 GTAGACTCCAACAGTGGTGGG 59.998 57.143 27.03 19.05 46.11 4.61
2336 2422 7.394016 TCAGATTCCAATGAAACTAGCACTAA 58.606 34.615 0.00 0.00 32.42 2.24
2501 2588 6.174049 ACTAATCCCAGAACTAGAAACAAGC 58.826 40.000 0.00 0.00 0.00 4.01
2539 2626 4.822036 TGTGGATTGTGAACCTTTTACG 57.178 40.909 0.00 0.00 0.00 3.18
2693 2913 3.393089 AGCTACTTGTGAAGGTGTCAG 57.607 47.619 0.00 0.00 36.74 3.51
2817 3040 4.918810 TTCTTTGGAAAGTGAAGCTTCC 57.081 40.909 23.42 14.41 36.17 3.46
2841 3064 8.490311 TCCCCTGAAAATTAAAGTTTTTCATGT 58.510 29.630 13.23 0.00 46.36 3.21
2922 3149 6.947733 TCAGGGAGATAAAACATGTCAATTGT 59.052 34.615 5.13 0.00 0.00 2.71
3041 3618 8.857694 ATCATCTTCCATTTTTGCTTTTCATT 57.142 26.923 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.948104 TTGGGATAAAGCGGACATCG 58.052 50.000 0.00 0.00 42.76 3.84
12 13 4.554723 CGAATTTGGGATAAAGCGGACATC 60.555 45.833 0.00 0.00 0.00 3.06
13 14 3.315191 CGAATTTGGGATAAAGCGGACAT 59.685 43.478 0.00 0.00 0.00 3.06
14 15 2.680841 CGAATTTGGGATAAAGCGGACA 59.319 45.455 0.00 0.00 0.00 4.02
15 16 2.940410 TCGAATTTGGGATAAAGCGGAC 59.060 45.455 0.00 0.00 0.00 4.79
16 17 3.269538 TCGAATTTGGGATAAAGCGGA 57.730 42.857 0.00 0.00 0.00 5.54
17 18 3.853307 GCATCGAATTTGGGATAAAGCGG 60.853 47.826 0.00 0.00 0.00 5.52
18 19 3.243035 TGCATCGAATTTGGGATAAAGCG 60.243 43.478 0.00 0.00 0.00 4.68
19 20 4.305989 TGCATCGAATTTGGGATAAAGC 57.694 40.909 0.00 0.00 0.00 3.51
20 21 5.894807 ACTTGCATCGAATTTGGGATAAAG 58.105 37.500 0.00 1.98 0.00 1.85
21 22 5.913137 ACTTGCATCGAATTTGGGATAAA 57.087 34.783 0.00 0.00 0.00 1.40
22 23 5.913137 AACTTGCATCGAATTTGGGATAA 57.087 34.783 0.00 0.00 0.00 1.75
23 24 5.394005 CCAAACTTGCATCGAATTTGGGATA 60.394 40.000 14.96 0.00 43.64 2.59
24 25 4.497300 CAAACTTGCATCGAATTTGGGAT 58.503 39.130 0.00 0.00 0.00 3.85
25 26 3.305950 CCAAACTTGCATCGAATTTGGGA 60.306 43.478 14.96 0.00 43.64 4.37
26 27 2.995258 CCAAACTTGCATCGAATTTGGG 59.005 45.455 14.96 0.00 43.64 4.12
27 28 2.995258 CCCAAACTTGCATCGAATTTGG 59.005 45.455 15.47 15.47 45.86 3.28
28 29 2.412770 GCCCAAACTTGCATCGAATTTG 59.587 45.455 0.00 0.00 0.00 2.32
29 30 2.299867 AGCCCAAACTTGCATCGAATTT 59.700 40.909 0.00 0.00 0.00 1.82
30 31 1.895131 AGCCCAAACTTGCATCGAATT 59.105 42.857 0.00 0.00 0.00 2.17
31 32 1.203052 CAGCCCAAACTTGCATCGAAT 59.797 47.619 0.00 0.00 0.00 3.34
32 33 0.597568 CAGCCCAAACTTGCATCGAA 59.402 50.000 0.00 0.00 0.00 3.71
33 34 0.250684 TCAGCCCAAACTTGCATCGA 60.251 50.000 0.00 0.00 0.00 3.59
34 35 0.169672 CTCAGCCCAAACTTGCATCG 59.830 55.000 0.00 0.00 0.00 3.84
35 36 1.538047 TCTCAGCCCAAACTTGCATC 58.462 50.000 0.00 0.00 0.00 3.91
36 37 1.822990 CATCTCAGCCCAAACTTGCAT 59.177 47.619 0.00 0.00 0.00 3.96
37 38 1.202915 TCATCTCAGCCCAAACTTGCA 60.203 47.619 0.00 0.00 0.00 4.08
38 39 1.471684 CTCATCTCAGCCCAAACTTGC 59.528 52.381 0.00 0.00 0.00 4.01
39 40 2.746362 GACTCATCTCAGCCCAAACTTG 59.254 50.000 0.00 0.00 0.00 3.16
40 41 2.613977 CGACTCATCTCAGCCCAAACTT 60.614 50.000 0.00 0.00 0.00 2.66
41 42 1.066573 CGACTCATCTCAGCCCAAACT 60.067 52.381 0.00 0.00 0.00 2.66
42 43 1.066858 TCGACTCATCTCAGCCCAAAC 60.067 52.381 0.00 0.00 0.00 2.93
43 44 1.266178 TCGACTCATCTCAGCCCAAA 58.734 50.000 0.00 0.00 0.00 3.28
44 45 1.266178 TTCGACTCATCTCAGCCCAA 58.734 50.000 0.00 0.00 0.00 4.12
45 46 1.266178 TTTCGACTCATCTCAGCCCA 58.734 50.000 0.00 0.00 0.00 5.36
46 47 2.003301 GTTTTCGACTCATCTCAGCCC 58.997 52.381 0.00 0.00 0.00 5.19
60 61 3.060138 TGTTCTGATTCCGTTCGTTTTCG 60.060 43.478 0.00 0.00 45.64 3.46
61 62 4.461992 TGTTCTGATTCCGTTCGTTTTC 57.538 40.909 0.00 0.00 0.00 2.29
62 63 5.432885 AATGTTCTGATTCCGTTCGTTTT 57.567 34.783 0.00 0.00 0.00 2.43
63 64 5.212194 CAAATGTTCTGATTCCGTTCGTTT 58.788 37.500 0.00 0.00 0.00 3.60
64 65 4.274950 ACAAATGTTCTGATTCCGTTCGTT 59.725 37.500 0.00 0.00 0.00 3.85
65 66 3.813166 ACAAATGTTCTGATTCCGTTCGT 59.187 39.130 0.00 0.00 0.00 3.85
66 67 4.394795 GACAAATGTTCTGATTCCGTTCG 58.605 43.478 0.00 0.00 0.00 3.95
67 68 4.669197 CGGACAAATGTTCTGATTCCGTTC 60.669 45.833 0.00 0.00 34.05 3.95
68 69 3.188460 CGGACAAATGTTCTGATTCCGTT 59.812 43.478 0.00 0.00 34.05 4.44
69 70 2.742053 CGGACAAATGTTCTGATTCCGT 59.258 45.455 0.00 0.00 34.05 4.69
70 71 2.742053 ACGGACAAATGTTCTGATTCCG 59.258 45.455 5.61 5.61 43.01 4.30
71 72 4.766404 AACGGACAAATGTTCTGATTCC 57.234 40.909 0.00 0.00 0.00 3.01
72 73 5.757886 TCAAACGGACAAATGTTCTGATTC 58.242 37.500 0.00 0.00 0.00 2.52
73 74 5.278463 CCTCAAACGGACAAATGTTCTGATT 60.278 40.000 0.00 0.00 0.00 2.57
74 75 4.216257 CCTCAAACGGACAAATGTTCTGAT 59.784 41.667 0.00 0.00 0.00 2.90
75 76 3.563808 CCTCAAACGGACAAATGTTCTGA 59.436 43.478 0.00 0.00 0.00 3.27
76 77 3.853307 GCCTCAAACGGACAAATGTTCTG 60.853 47.826 0.00 0.00 0.00 3.02
77 78 2.293399 GCCTCAAACGGACAAATGTTCT 59.707 45.455 0.00 0.00 0.00 3.01
78 79 2.607038 GGCCTCAAACGGACAAATGTTC 60.607 50.000 0.00 0.00 30.13 3.18
79 80 1.339929 GGCCTCAAACGGACAAATGTT 59.660 47.619 0.00 0.00 30.13 2.71
80 81 0.958822 GGCCTCAAACGGACAAATGT 59.041 50.000 0.00 0.00 30.13 2.71
81 82 0.958091 TGGCCTCAAACGGACAAATG 59.042 50.000 3.32 0.00 39.73 2.32
82 83 0.958822 GTGGCCTCAAACGGACAAAT 59.041 50.000 3.32 0.00 45.53 2.32
83 84 1.440938 CGTGGCCTCAAACGGACAAA 61.441 55.000 3.32 0.00 45.53 2.83
84 85 1.890041 CGTGGCCTCAAACGGACAA 60.890 57.895 3.32 0.00 45.53 3.18
85 86 2.280524 CGTGGCCTCAAACGGACA 60.281 61.111 3.32 0.00 40.63 4.02
86 87 2.280592 ACGTGGCCTCAAACGGAC 60.281 61.111 16.65 0.00 43.96 4.79
87 88 2.280524 CACGTGGCCTCAAACGGA 60.281 61.111 16.65 0.00 43.96 4.69
88 89 2.184167 AACACGTGGCCTCAAACGG 61.184 57.895 21.57 8.74 43.96 4.44
89 90 1.010125 CAACACGTGGCCTCAAACG 60.010 57.895 21.57 11.46 45.15 3.60
90 91 1.358759 CCAACACGTGGCCTCAAAC 59.641 57.895 21.57 0.00 41.72 2.93
91 92 3.834726 CCAACACGTGGCCTCAAA 58.165 55.556 21.57 0.00 41.72 2.69
102 103 3.108357 GAATAGCGCGGCCCAACAC 62.108 63.158 8.83 0.00 0.00 3.32
103 104 2.822255 GAATAGCGCGGCCCAACA 60.822 61.111 8.83 0.00 0.00 3.33
104 105 3.937062 CGAATAGCGCGGCCCAAC 61.937 66.667 8.83 0.00 0.00 3.77
105 106 4.460683 ACGAATAGCGCGGCCCAA 62.461 61.111 8.83 0.00 46.04 4.12
106 107 4.884257 GACGAATAGCGCGGCCCA 62.884 66.667 8.83 0.00 46.04 5.36
110 111 2.574222 GAACGGACGAATAGCGCGG 61.574 63.158 8.83 0.00 46.04 6.46
111 112 0.316442 TAGAACGGACGAATAGCGCG 60.316 55.000 0.00 0.00 46.04 6.86
112 113 1.118833 GTAGAACGGACGAATAGCGC 58.881 55.000 0.00 0.00 46.04 5.92
114 115 1.269465 GGGGTAGAACGGACGAATAGC 60.269 57.143 0.00 0.00 0.00 2.97
115 116 2.026641 TGGGGTAGAACGGACGAATAG 58.973 52.381 0.00 0.00 0.00 1.73
116 117 2.142356 TGGGGTAGAACGGACGAATA 57.858 50.000 0.00 0.00 0.00 1.75
117 118 1.269012 TTGGGGTAGAACGGACGAAT 58.731 50.000 0.00 0.00 0.00 3.34
118 119 1.047002 TTTGGGGTAGAACGGACGAA 58.953 50.000 0.00 0.00 0.00 3.85
119 120 0.318120 GTTTGGGGTAGAACGGACGA 59.682 55.000 0.00 0.00 0.00 4.20
120 121 1.010419 CGTTTGGGGTAGAACGGACG 61.010 60.000 1.06 0.00 43.44 4.79
121 122 2.831597 CGTTTGGGGTAGAACGGAC 58.168 57.895 1.06 0.00 43.44 4.79
124 125 1.010419 CGTCCGTTTGGGGTAGAACG 61.010 60.000 1.98 1.98 45.89 3.95
125 126 1.293963 GCGTCCGTTTGGGGTAGAAC 61.294 60.000 0.00 0.00 36.01 3.01
126 127 1.004679 GCGTCCGTTTGGGGTAGAA 60.005 57.895 0.00 0.00 36.01 2.10
127 128 1.546589 ATGCGTCCGTTTGGGGTAGA 61.547 55.000 0.00 0.00 36.01 2.59
128 129 1.078708 ATGCGTCCGTTTGGGGTAG 60.079 57.895 0.00 0.00 36.01 3.18
129 130 1.078988 GATGCGTCCGTTTGGGGTA 60.079 57.895 0.00 0.00 36.01 3.69
130 131 2.359478 GATGCGTCCGTTTGGGGT 60.359 61.111 0.00 0.00 36.01 4.95
131 132 3.131478 GGATGCGTCCGTTTGGGG 61.131 66.667 9.75 0.00 34.13 4.96
139 140 1.673033 CCATCTTATCCGGATGCGTCC 60.673 57.143 27.55 15.54 39.19 4.79
140 141 1.673033 CCCATCTTATCCGGATGCGTC 60.673 57.143 27.55 0.00 39.19 5.19
141 142 0.321671 CCCATCTTATCCGGATGCGT 59.678 55.000 27.55 3.44 39.19 5.24
142 143 0.391661 CCCCATCTTATCCGGATGCG 60.392 60.000 27.55 16.81 39.19 4.73
143 144 0.693049 ACCCCATCTTATCCGGATGC 59.307 55.000 27.55 0.00 39.19 3.91
144 145 1.066858 CGACCCCATCTTATCCGGATG 60.067 57.143 27.55 11.46 39.94 3.51
145 146 1.267121 CGACCCCATCTTATCCGGAT 58.733 55.000 22.95 22.95 0.00 4.18
146 147 1.469335 GCGACCCCATCTTATCCGGA 61.469 60.000 6.61 6.61 0.00 5.14
147 148 1.004918 GCGACCCCATCTTATCCGG 60.005 63.158 0.00 0.00 0.00 5.14
148 149 1.372997 CGCGACCCCATCTTATCCG 60.373 63.158 0.00 0.00 0.00 4.18
149 150 1.668151 GCGCGACCCCATCTTATCC 60.668 63.158 12.10 0.00 0.00 2.59
150 151 2.022129 CGCGCGACCCCATCTTATC 61.022 63.158 28.94 0.00 0.00 1.75
151 152 1.816863 ATCGCGCGACCCCATCTTAT 61.817 55.000 37.37 12.64 0.00 1.73
152 153 2.495409 ATCGCGCGACCCCATCTTA 61.495 57.895 37.37 9.15 0.00 2.10
153 154 3.849951 ATCGCGCGACCCCATCTT 61.850 61.111 37.37 14.38 0.00 2.40
154 155 4.592192 CATCGCGCGACCCCATCT 62.592 66.667 37.37 15.27 0.00 2.90
159 160 4.814294 AACTCCATCGCGCGACCC 62.814 66.667 37.37 0.00 0.00 4.46
160 161 3.554692 CAACTCCATCGCGCGACC 61.555 66.667 37.37 0.00 0.00 4.79
161 162 3.554692 CCAACTCCATCGCGCGAC 61.555 66.667 37.37 0.00 0.00 5.19
165 166 0.532862 ATAAGGCCAACTCCATCGCG 60.533 55.000 5.01 0.00 0.00 5.87
166 167 1.604278 GAATAAGGCCAACTCCATCGC 59.396 52.381 5.01 0.00 0.00 4.58
167 168 2.158755 AGGAATAAGGCCAACTCCATCG 60.159 50.000 5.01 0.00 0.00 3.84
168 169 3.117888 TCAGGAATAAGGCCAACTCCATC 60.118 47.826 5.01 0.00 0.00 3.51
169 170 2.852449 TCAGGAATAAGGCCAACTCCAT 59.148 45.455 5.01 0.00 0.00 3.41
170 171 2.239654 CTCAGGAATAAGGCCAACTCCA 59.760 50.000 5.01 0.00 0.00 3.86
171 172 2.505819 TCTCAGGAATAAGGCCAACTCC 59.494 50.000 5.01 5.19 0.00 3.85
172 173 3.914426 TCTCAGGAATAAGGCCAACTC 57.086 47.619 5.01 0.00 0.00 3.01
173 174 4.228210 TCAATCTCAGGAATAAGGCCAACT 59.772 41.667 5.01 0.00 0.00 3.16
174 175 4.526970 TCAATCTCAGGAATAAGGCCAAC 58.473 43.478 5.01 0.00 0.00 3.77
175 176 4.860802 TCAATCTCAGGAATAAGGCCAA 57.139 40.909 5.01 0.00 0.00 4.52
176 177 4.860802 TTCAATCTCAGGAATAAGGCCA 57.139 40.909 5.01 0.00 0.00 5.36
177 178 5.380043 TCATTCAATCTCAGGAATAAGGCC 58.620 41.667 0.00 0.00 32.71 5.19
178 179 6.713903 TGATCATTCAATCTCAGGAATAAGGC 59.286 38.462 0.00 0.00 32.71 4.35
179 180 7.094720 GCTGATCATTCAATCTCAGGAATAAGG 60.095 40.741 0.00 0.00 36.48 2.69
180 181 7.662258 AGCTGATCATTCAATCTCAGGAATAAG 59.338 37.037 0.00 0.00 36.48 1.73
181 182 7.515586 AGCTGATCATTCAATCTCAGGAATAA 58.484 34.615 0.00 0.00 36.48 1.40
182 183 7.075851 AGCTGATCATTCAATCTCAGGAATA 57.924 36.000 0.00 0.00 36.48 1.75
183 184 5.942961 AGCTGATCATTCAATCTCAGGAAT 58.057 37.500 0.00 0.00 36.48 3.01
184 185 5.366460 GAGCTGATCATTCAATCTCAGGAA 58.634 41.667 0.00 0.00 36.48 3.36
185 186 4.501058 CGAGCTGATCATTCAATCTCAGGA 60.501 45.833 0.00 0.00 36.48 3.86
186 187 3.741856 CGAGCTGATCATTCAATCTCAGG 59.258 47.826 0.00 0.00 36.48 3.86
187 188 4.209495 CACGAGCTGATCATTCAATCTCAG 59.791 45.833 0.00 3.08 38.49 3.35
188 189 4.117685 CACGAGCTGATCATTCAATCTCA 58.882 43.478 0.00 0.00 34.04 3.27
189 190 3.493877 CCACGAGCTGATCATTCAATCTC 59.506 47.826 0.00 0.00 32.44 2.75
190 191 3.133542 TCCACGAGCTGATCATTCAATCT 59.866 43.478 0.00 0.00 0.00 2.40
191 192 3.461061 TCCACGAGCTGATCATTCAATC 58.539 45.455 0.00 0.00 0.00 2.67
192 193 3.548745 TCCACGAGCTGATCATTCAAT 57.451 42.857 0.00 0.00 0.00 2.57
193 194 3.055891 TCTTCCACGAGCTGATCATTCAA 60.056 43.478 0.00 0.00 0.00 2.69
194 195 2.497273 TCTTCCACGAGCTGATCATTCA 59.503 45.455 0.00 0.00 0.00 2.57
195 196 2.863137 GTCTTCCACGAGCTGATCATTC 59.137 50.000 0.00 0.00 0.00 2.67
196 197 2.499289 AGTCTTCCACGAGCTGATCATT 59.501 45.455 0.00 0.00 0.00 2.57
197 198 2.106566 AGTCTTCCACGAGCTGATCAT 58.893 47.619 0.00 0.00 0.00 2.45
198 199 1.550327 AGTCTTCCACGAGCTGATCA 58.450 50.000 0.00 0.00 0.00 2.92
199 200 2.266554 CAAGTCTTCCACGAGCTGATC 58.733 52.381 0.00 0.00 0.00 2.92
200 201 1.674221 GCAAGTCTTCCACGAGCTGAT 60.674 52.381 0.00 0.00 0.00 2.90
201 202 0.319900 GCAAGTCTTCCACGAGCTGA 60.320 55.000 0.00 0.00 0.00 4.26
202 203 0.601046 TGCAAGTCTTCCACGAGCTG 60.601 55.000 0.00 0.00 32.64 4.24
203 204 0.322975 ATGCAAGTCTTCCACGAGCT 59.677 50.000 0.00 0.00 32.64 4.09
204 205 0.445436 CATGCAAGTCTTCCACGAGC 59.555 55.000 0.00 0.00 0.00 5.03
205 206 1.081892 CCATGCAAGTCTTCCACGAG 58.918 55.000 0.00 0.00 0.00 4.18
206 207 0.321564 CCCATGCAAGTCTTCCACGA 60.322 55.000 0.00 0.00 0.00 4.35
207 208 1.926511 GCCCATGCAAGTCTTCCACG 61.927 60.000 0.00 0.00 37.47 4.94
208 209 1.885871 GCCCATGCAAGTCTTCCAC 59.114 57.895 0.00 0.00 37.47 4.02
209 210 1.675310 CGCCCATGCAAGTCTTCCA 60.675 57.895 0.00 0.00 37.32 3.53
210 211 1.675641 ACGCCCATGCAAGTCTTCC 60.676 57.895 0.00 0.00 37.32 3.46
211 212 1.237285 ACACGCCCATGCAAGTCTTC 61.237 55.000 0.00 0.00 37.32 2.87
212 213 0.823356 AACACGCCCATGCAAGTCTT 60.823 50.000 0.00 0.00 37.32 3.01
213 214 1.228245 AACACGCCCATGCAAGTCT 60.228 52.632 0.00 0.00 37.32 3.24
214 215 1.210155 GAACACGCCCATGCAAGTC 59.790 57.895 0.00 0.00 37.32 3.01
215 216 1.528076 TGAACACGCCCATGCAAGT 60.528 52.632 0.00 0.00 37.32 3.16
216 217 1.081242 GTGAACACGCCCATGCAAG 60.081 57.895 0.00 0.00 37.32 4.01
217 218 1.514678 GAGTGAACACGCCCATGCAA 61.515 55.000 0.00 0.00 37.32 4.08
218 219 1.965930 GAGTGAACACGCCCATGCA 60.966 57.895 0.00 0.00 37.32 3.96
219 220 0.391130 TAGAGTGAACACGCCCATGC 60.391 55.000 5.19 0.00 36.20 4.06
220 221 1.337728 TGTAGAGTGAACACGCCCATG 60.338 52.381 5.19 0.00 36.20 3.66
221 222 0.973632 TGTAGAGTGAACACGCCCAT 59.026 50.000 5.19 0.00 36.20 4.00
222 223 0.753867 TTGTAGAGTGAACACGCCCA 59.246 50.000 5.19 0.91 36.20 5.36
223 224 1.873698 TTTGTAGAGTGAACACGCCC 58.126 50.000 5.19 0.00 36.20 6.13
224 225 4.483476 AATTTTGTAGAGTGAACACGCC 57.517 40.909 5.19 0.00 36.20 5.68
225 226 5.331532 GCAAAATTTTGTAGAGTGAACACGC 60.332 40.000 27.13 8.23 40.24 5.34
226 227 5.741510 TGCAAAATTTTGTAGAGTGAACACG 59.258 36.000 27.13 2.43 40.24 4.49
227 228 7.518731 TTGCAAAATTTTGTAGAGTGAACAC 57.481 32.000 27.13 10.26 40.24 3.32
228 229 8.715191 AATTGCAAAATTTTGTAGAGTGAACA 57.285 26.923 27.13 13.41 40.24 3.18
245 246 9.801873 GAGGTAGCATAAATTCTAAATTGCAAA 57.198 29.630 1.71 0.00 32.66 3.68
246 247 9.189156 AGAGGTAGCATAAATTCTAAATTGCAA 57.811 29.630 0.00 0.00 32.66 4.08
247 248 8.752005 AGAGGTAGCATAAATTCTAAATTGCA 57.248 30.769 0.00 0.00 32.66 4.08
248 249 9.455847 CAAGAGGTAGCATAAATTCTAAATTGC 57.544 33.333 0.00 0.00 0.00 3.56
252 253 9.733556 TCAACAAGAGGTAGCATAAATTCTAAA 57.266 29.630 0.00 0.00 0.00 1.85
253 254 9.162764 GTCAACAAGAGGTAGCATAAATTCTAA 57.837 33.333 0.00 0.00 0.00 2.10
254 255 7.491372 CGTCAACAAGAGGTAGCATAAATTCTA 59.509 37.037 0.00 0.00 0.00 2.10
255 256 6.313905 CGTCAACAAGAGGTAGCATAAATTCT 59.686 38.462 0.00 0.00 0.00 2.40
256 257 6.478588 CGTCAACAAGAGGTAGCATAAATTC 58.521 40.000 0.00 0.00 0.00 2.17
257 258 5.163754 GCGTCAACAAGAGGTAGCATAAATT 60.164 40.000 0.00 0.00 34.65 1.82
258 259 4.332819 GCGTCAACAAGAGGTAGCATAAAT 59.667 41.667 0.00 0.00 34.65 1.40
259 260 3.682858 GCGTCAACAAGAGGTAGCATAAA 59.317 43.478 0.00 0.00 34.65 1.40
260 261 3.259064 GCGTCAACAAGAGGTAGCATAA 58.741 45.455 0.00 0.00 34.65 1.90
261 262 2.232696 TGCGTCAACAAGAGGTAGCATA 59.767 45.455 0.00 0.00 34.65 3.14
262 263 1.001974 TGCGTCAACAAGAGGTAGCAT 59.998 47.619 0.00 0.00 34.65 3.79
263 264 0.391228 TGCGTCAACAAGAGGTAGCA 59.609 50.000 0.00 0.00 34.65 3.49
264 265 0.790814 GTGCGTCAACAAGAGGTAGC 59.209 55.000 0.00 0.00 34.65 3.58
265 266 2.148916 TGTGCGTCAACAAGAGGTAG 57.851 50.000 0.00 0.00 34.65 3.18
266 267 2.605837 TTGTGCGTCAACAAGAGGTA 57.394 45.000 0.00 0.00 35.16 3.08
267 268 1.745232 TTTGTGCGTCAACAAGAGGT 58.255 45.000 1.75 0.00 40.93 3.85
268 269 2.842208 TTTTGTGCGTCAACAAGAGG 57.158 45.000 1.75 0.00 40.93 3.69
269 270 4.214980 AGATTTTGTGCGTCAACAAGAG 57.785 40.909 1.75 0.00 40.93 2.85
270 271 5.940192 ATAGATTTTGTGCGTCAACAAGA 57.060 34.783 1.75 0.00 40.93 3.02
271 272 5.569059 GGAATAGATTTTGTGCGTCAACAAG 59.431 40.000 1.75 0.00 40.93 3.16
272 273 5.240623 AGGAATAGATTTTGTGCGTCAACAA 59.759 36.000 0.00 0.00 38.26 2.83
273 274 4.759693 AGGAATAGATTTTGTGCGTCAACA 59.240 37.500 0.00 0.00 35.61 3.33
274 275 5.296813 AGGAATAGATTTTGTGCGTCAAC 57.703 39.130 0.00 0.00 35.61 3.18
275 276 7.624360 ATTAGGAATAGATTTTGTGCGTCAA 57.376 32.000 0.00 0.00 0.00 3.18
276 277 8.725405 TTATTAGGAATAGATTTTGTGCGTCA 57.275 30.769 0.00 0.00 0.00 4.35
310 311 8.495949 CGAAGTCAATCCGTGCTTTATTATTAT 58.504 33.333 0.00 0.00 0.00 1.28
429 434 6.820152 CGGGTCATATGATCACATGAATACAT 59.180 38.462 18.00 2.79 37.87 2.29
430 435 6.165577 CGGGTCATATGATCACATGAATACA 58.834 40.000 18.00 0.00 37.87 2.29
431 436 5.063944 GCGGGTCATATGATCACATGAATAC 59.936 44.000 18.00 11.19 37.87 1.89
475 480 2.004017 TCGTGCGTGGAATAATGGAAC 58.996 47.619 0.00 0.00 0.00 3.62
476 481 2.004017 GTCGTGCGTGGAATAATGGAA 58.996 47.619 0.00 0.00 0.00 3.53
477 482 1.206132 AGTCGTGCGTGGAATAATGGA 59.794 47.619 0.00 0.00 0.00 3.41
478 483 1.651987 AGTCGTGCGTGGAATAATGG 58.348 50.000 0.00 0.00 0.00 3.16
479 484 3.740044 AAAGTCGTGCGTGGAATAATG 57.260 42.857 0.00 0.00 0.00 1.90
480 485 3.126343 GGAAAAGTCGTGCGTGGAATAAT 59.874 43.478 0.00 0.00 0.00 1.28
483 488 0.872388 GGAAAAGTCGTGCGTGGAAT 59.128 50.000 0.00 0.00 0.00 3.01
498 503 7.747155 TGATTAATAACAGGAACAACGGAAA 57.253 32.000 0.00 0.00 0.00 3.13
553 558 1.679153 GCCTTTTTCCTGTTCGTGGAA 59.321 47.619 0.00 0.00 41.33 3.53
573 578 1.986378 GTCTCGTGTCCTTGATCAACG 59.014 52.381 3.38 7.31 0.00 4.10
596 601 1.505353 GATGGACGTCGACTCGGTT 59.495 57.895 14.70 0.00 34.94 4.44
604 609 2.031595 AGATTGATCTCGATGGACGTCG 60.032 50.000 9.92 7.57 43.13 5.12
623 628 6.876155 TGTTTTTATATGTAGGCGTGGTAGA 58.124 36.000 0.00 0.00 0.00 2.59
879 903 3.003113 GCCTAGGTCGTCGCACCTT 62.003 63.158 17.64 6.45 45.24 3.50
937 961 1.531264 CGTGTCGTATCCCTTCGTCAG 60.531 57.143 0.00 0.00 0.00 3.51
943 967 1.880819 AACGCCGTGTCGTATCCCTT 61.881 55.000 0.00 0.00 42.46 3.95
1209 1264 2.766263 TGACACCACACCATCCTCTATC 59.234 50.000 0.00 0.00 0.00 2.08
1251 1306 1.198408 CCTGCAGAACGTGTACTCGTA 59.802 52.381 21.83 6.56 43.38 3.43
1312 1367 1.474077 GTCAAACACCATGAGGGCATC 59.526 52.381 0.00 0.00 42.05 3.91
1333 1388 2.427095 GGCGGTGGAGAAATAGCAATTT 59.573 45.455 0.00 0.00 38.03 1.82
1759 1817 9.520515 AGAACTCCATACATTTTGTTCAAGTAT 57.479 29.630 0.00 0.00 37.03 2.12
2082 2151 1.257743 CGTCCAAGAGTCCTCCTTGA 58.742 55.000 0.00 0.00 42.57 3.02
2149 2218 7.005296 GGAGGAATACCATCTCAGAGTAGTTA 58.995 42.308 0.00 0.00 38.94 2.24
2209 2281 5.693769 TGTACTTCATTTAGAGAAGGGGG 57.306 43.478 7.71 0.00 45.18 5.40
2216 2288 6.256757 GCTAGCAGGTTGTACTTCATTTAGAG 59.743 42.308 10.63 0.00 0.00 2.43
2501 2588 4.002982 TCCACAAATCTTTCGATCACCTG 58.997 43.478 0.00 0.00 0.00 4.00
2539 2626 1.070914 GCACCCTAGGGATAAGACTGC 59.929 57.143 35.38 25.86 38.96 4.40
2912 3139 6.053632 TCATCTCTACCACACAATTGACAT 57.946 37.500 13.59 0.00 0.00 3.06
2922 3149 6.686378 GCACCAATAATCTCATCTCTACCACA 60.686 42.308 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.