Multiple sequence alignment - TraesCS4A01G220200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G220200 chr4A 100.000 2776 0 0 1 2776 522974478 522971703 0.000000e+00 5127.0
1 TraesCS4A01G220200 chr4A 97.048 1084 31 1 876 1959 524178548 524179630 0.000000e+00 1823.0
2 TraesCS4A01G220200 chr4A 81.818 539 56 21 2265 2775 456323237 456322713 5.530000e-112 414.0
3 TraesCS4A01G220200 chr4A 81.382 521 55 21 2283 2775 457555878 457555372 1.210000e-103 387.0
4 TraesCS4A01G220200 chr4A 83.333 84 11 2 1983 2063 524179405 524179488 1.070000e-09 75.0
5 TraesCS4A01G220200 chr4A 82.143 84 12 2 1734 1817 522972496 522972416 4.960000e-08 69.4
6 TraesCS4A01G220200 chr4A 82.143 84 12 2 1983 2063 522972745 522972662 4.960000e-08 69.4
7 TraesCS4A01G220200 chr4B 93.988 1181 53 7 794 1959 104341592 104342769 0.000000e+00 1772.0
8 TraesCS4A01G220200 chr4B 94.522 1004 34 4 816 1817 103891358 103890374 0.000000e+00 1530.0
9 TraesCS4A01G220200 chr4B 94.522 1004 34 4 816 1817 104131820 104130836 0.000000e+00 1530.0
10 TraesCS4A01G220200 chr4B 94.428 1005 34 5 816 1817 104005913 104004928 0.000000e+00 1526.0
11 TraesCS4A01G220200 chr4B 89.493 276 14 5 1983 2257 104130916 104130655 4.430000e-88 335.0
12 TraesCS4A01G220200 chr4B 89.130 276 15 5 1983 2257 104005008 104004747 2.060000e-86 329.0
13 TraesCS4A01G220200 chr4B 88.768 276 16 5 1983 2257 103890454 103890193 9.590000e-85 324.0
14 TraesCS4A01G220200 chr4B 90.000 110 5 2 695 804 103897104 103897001 1.340000e-28 137.0
15 TraesCS4A01G220200 chr4B 90.000 110 5 2 695 804 104011070 104010967 1.340000e-28 137.0
16 TraesCS4A01G220200 chr4B 90.000 110 5 2 695 804 104137241 104137138 1.340000e-28 137.0
17 TraesCS4A01G220200 chr4B 85.088 114 12 3 2497 2606 640316711 640316599 8.130000e-21 111.0
18 TraesCS4A01G220200 chr4B 91.304 69 3 2 2708 2776 640316528 640316463 1.060000e-14 91.6
19 TraesCS4A01G220200 chr4B 82.143 84 12 3 1983 2063 104342545 104342628 4.960000e-08 69.4
20 TraesCS4A01G220200 chr4D 94.430 1131 45 7 699 1819 70338083 70336961 0.000000e+00 1724.0
21 TraesCS4A01G220200 chr4D 94.532 1079 51 6 794 1867 70364998 70366073 0.000000e+00 1659.0
22 TraesCS4A01G220200 chr4D 93.261 1113 56 12 701 1813 70343769 70342676 0.000000e+00 1622.0
23 TraesCS4A01G220200 chr4D 88.636 484 39 7 30 501 79223673 79224152 2.400000e-160 575.0
24 TraesCS4A01G220200 chr4D 93.333 195 13 0 1983 2177 70337043 70336849 3.500000e-74 289.0
25 TraesCS4A01G220200 chr4D 97.938 97 2 0 1863 1959 70372065 70372161 4.750000e-38 169.0
26 TraesCS4A01G220200 chr4D 93.827 81 5 0 2192 2272 70336192 70336112 3.750000e-24 122.0
27 TraesCS4A01G220200 chr4D 94.805 77 4 0 1983 2059 70342752 70342676 1.350000e-23 121.0
28 TraesCS4A01G220200 chr4D 83.333 84 11 3 1983 2063 70365940 70366023 1.070000e-09 75.0
29 TraesCS4A01G220200 chr5D 84.783 690 70 17 997 1662 276931946 276931268 0.000000e+00 660.0
30 TraesCS4A01G220200 chr2A 88.086 512 43 10 1 501 542758251 542757747 2.380000e-165 592.0
31 TraesCS4A01G220200 chr2A 86.914 512 39 11 1 501 714059865 714060359 1.450000e-152 549.0
32 TraesCS4A01G220200 chr2D 87.695 512 46 9 4 501 626641651 626642159 5.150000e-162 580.0
33 TraesCS4A01G220200 chr3B 87.835 485 45 6 30 501 169435285 169435768 8.690000e-155 556.0
34 TraesCS4A01G220200 chr7D 86.680 518 46 8 1 501 613463512 613463001 1.120000e-153 553.0
35 TraesCS4A01G220200 chr3A 86.628 516 49 9 1 501 466578099 466578609 1.120000e-153 553.0
36 TraesCS4A01G220200 chr1D 86.408 515 52 9 1 501 49608318 49608828 5.230000e-152 547.0
37 TraesCS4A01G220200 chr7A 86.523 512 50 9 4 501 704953472 704952966 1.880000e-151 545.0
38 TraesCS4A01G220200 chr7A 86.106 511 54 7 4 501 704954417 704953911 4.070000e-148 534.0
39 TraesCS4A01G220200 chr7A 82.998 547 62 15 2258 2776 127455811 127455268 1.510000e-127 466.0
40 TraesCS4A01G220200 chr7A 83.074 514 49 18 2297 2776 650363606 650364115 1.530000e-117 433.0
41 TraesCS4A01G220200 chr7B 87.164 483 40 7 30 501 17841190 17841661 1.890000e-146 529.0
42 TraesCS4A01G220200 chr7B 82.189 539 54 21 2265 2775 531437435 531436911 2.560000e-115 425.0
43 TraesCS4A01G220200 chr5B 84.466 515 57 10 1 501 454279011 454279516 1.160000e-133 486.0
44 TraesCS4A01G220200 chr2B 83.398 512 50 11 1 501 71530407 71530894 2.540000e-120 442.0
45 TraesCS4A01G220200 chr2B 88.298 188 17 3 514 696 71531069 71531256 1.290000e-53 220.0
46 TraesCS4A01G220200 chr1A 86.538 156 18 2 2266 2421 523108414 523108262 4.750000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G220200 chr4A 522971703 522974478 2775 True 1755.266667 5127 88.095333 1 2776 3 chr4A.!!$R3 2775
1 TraesCS4A01G220200 chr4A 524178548 524179630 1082 False 949.000000 1823 90.190500 876 2063 2 chr4A.!!$F1 1187
2 TraesCS4A01G220200 chr4A 456322713 456323237 524 True 414.000000 414 81.818000 2265 2775 1 chr4A.!!$R1 510
3 TraesCS4A01G220200 chr4A 457555372 457555878 506 True 387.000000 387 81.382000 2283 2775 1 chr4A.!!$R2 492
4 TraesCS4A01G220200 chr4B 104130655 104131820 1165 True 932.500000 1530 92.007500 816 2257 2 chr4B.!!$R6 1441
5 TraesCS4A01G220200 chr4B 104004747 104005913 1166 True 927.500000 1526 91.779000 816 2257 2 chr4B.!!$R5 1441
6 TraesCS4A01G220200 chr4B 103890193 103891358 1165 True 927.000000 1530 91.645000 816 2257 2 chr4B.!!$R4 1441
7 TraesCS4A01G220200 chr4B 104341592 104342769 1177 False 920.700000 1772 88.065500 794 2063 2 chr4B.!!$F1 1269
8 TraesCS4A01G220200 chr4D 70342676 70343769 1093 True 871.500000 1622 94.033000 701 2059 2 chr4D.!!$R2 1358
9 TraesCS4A01G220200 chr4D 70364998 70366073 1075 False 867.000000 1659 88.932500 794 2063 2 chr4D.!!$F3 1269
10 TraesCS4A01G220200 chr4D 70336112 70338083 1971 True 711.666667 1724 93.863333 699 2272 3 chr4D.!!$R1 1573
11 TraesCS4A01G220200 chr5D 276931268 276931946 678 True 660.000000 660 84.783000 997 1662 1 chr5D.!!$R1 665
12 TraesCS4A01G220200 chr2A 542757747 542758251 504 True 592.000000 592 88.086000 1 501 1 chr2A.!!$R1 500
13 TraesCS4A01G220200 chr2D 626641651 626642159 508 False 580.000000 580 87.695000 4 501 1 chr2D.!!$F1 497
14 TraesCS4A01G220200 chr7D 613463001 613463512 511 True 553.000000 553 86.680000 1 501 1 chr7D.!!$R1 500
15 TraesCS4A01G220200 chr3A 466578099 466578609 510 False 553.000000 553 86.628000 1 501 1 chr3A.!!$F1 500
16 TraesCS4A01G220200 chr1D 49608318 49608828 510 False 547.000000 547 86.408000 1 501 1 chr1D.!!$F1 500
17 TraesCS4A01G220200 chr7A 704952966 704954417 1451 True 539.500000 545 86.314500 4 501 2 chr7A.!!$R2 497
18 TraesCS4A01G220200 chr7A 127455268 127455811 543 True 466.000000 466 82.998000 2258 2776 1 chr7A.!!$R1 518
19 TraesCS4A01G220200 chr7A 650363606 650364115 509 False 433.000000 433 83.074000 2297 2776 1 chr7A.!!$F1 479
20 TraesCS4A01G220200 chr7B 531436911 531437435 524 True 425.000000 425 82.189000 2265 2775 1 chr7B.!!$R1 510
21 TraesCS4A01G220200 chr5B 454279011 454279516 505 False 486.000000 486 84.466000 1 501 1 chr5B.!!$F1 500
22 TraesCS4A01G220200 chr2B 71530407 71531256 849 False 331.000000 442 85.848000 1 696 2 chr2B.!!$F1 695

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
195 206 0.0414 CGTCGTGTTGCAATGCTTGA 60.041 50.0 6.82 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1877 3171 0.036164 CCGTGGACCAAGACCAATCA 59.964 55.0 9.22 0.0 39.22 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 114 1.055040 GGCCTCTACTCCAGCATGAT 58.945 55.000 0.00 0.00 39.69 2.45
195 206 0.041400 CGTCGTGTTGCAATGCTTGA 60.041 50.000 6.82 0.00 0.00 3.02
211 222 3.384789 TGCTTGACCTCGTATGCTCTAAT 59.615 43.478 0.00 0.00 0.00 1.73
246 257 0.179040 AACGCTTTCTTCAACCGGGA 60.179 50.000 6.32 0.00 0.00 5.14
268 279 6.408662 GGGACTATATTTCTGAAGCAAGACCT 60.409 42.308 0.00 0.00 0.00 3.85
426 1401 0.108804 TGCAGAAACCGTCGATCTCC 60.109 55.000 0.00 0.00 0.00 3.71
442 1417 1.822990 TCTCCGATTCGTACCTGCTTT 59.177 47.619 5.20 0.00 0.00 3.51
455 1430 2.180017 GCTTTAGTCGTCGCCGGA 59.820 61.111 5.05 0.00 33.95 5.14
477 1452 2.125106 GCCGATCCCGAGCAAGTT 60.125 61.111 0.00 0.00 38.22 2.66
480 1455 1.084370 CCGATCCCGAGCAAGTTGTC 61.084 60.000 4.48 0.47 38.22 3.18
491 1466 2.244651 AAGTTGTCGTCGCCACTGC 61.245 57.895 0.00 0.00 0.00 4.40
504 1479 3.832704 CACTGCGGTGGATAACAGA 57.167 52.632 18.43 0.00 39.59 3.41
505 1480 1.359848 CACTGCGGTGGATAACAGAC 58.640 55.000 18.43 0.00 39.59 3.51
506 1481 0.108804 ACTGCGGTGGATAACAGACG 60.109 55.000 0.00 0.00 34.25 4.18
507 1482 3.395669 GCGGTGGATAACAGACGC 58.604 61.111 0.00 0.00 45.25 5.19
508 1483 2.514013 GCGGTGGATAACAGACGCG 61.514 63.158 3.53 3.53 43.54 6.01
509 1484 1.876714 CGGTGGATAACAGACGCGG 60.877 63.158 12.47 0.00 0.00 6.46
510 1485 2.171725 GGTGGATAACAGACGCGGC 61.172 63.158 12.47 7.86 0.00 6.53
511 1486 1.153628 GTGGATAACAGACGCGGCT 60.154 57.895 9.84 9.84 0.00 5.52
512 1487 0.739813 GTGGATAACAGACGCGGCTT 60.740 55.000 14.60 0.00 0.00 4.35
513 1488 0.459585 TGGATAACAGACGCGGCTTC 60.460 55.000 14.60 7.46 0.00 3.86
514 1489 1.152383 GGATAACAGACGCGGCTTCC 61.152 60.000 14.60 14.47 0.00 3.46
515 1490 1.152383 GATAACAGACGCGGCTTCCC 61.152 60.000 14.60 0.00 0.00 3.97
516 1491 2.588856 ATAACAGACGCGGCTTCCCC 62.589 60.000 14.60 0.00 0.00 4.81
525 1500 4.753662 GGCTTCCCCGAAACCCCC 62.754 72.222 0.00 0.00 0.00 5.40
543 1518 2.105993 CCCCCTACTATTACCCAGTTGC 59.894 54.545 0.00 0.00 0.00 4.17
544 1519 2.775384 CCCCTACTATTACCCAGTTGCA 59.225 50.000 0.00 0.00 0.00 4.08
545 1520 3.181454 CCCCTACTATTACCCAGTTGCAG 60.181 52.174 0.00 0.00 0.00 4.41
546 1521 3.181454 CCCTACTATTACCCAGTTGCAGG 60.181 52.174 0.00 0.00 0.00 4.85
547 1522 3.709653 CCTACTATTACCCAGTTGCAGGA 59.290 47.826 0.00 0.00 0.00 3.86
548 1523 4.163458 CCTACTATTACCCAGTTGCAGGAA 59.837 45.833 0.00 0.00 0.00 3.36
549 1524 4.862641 ACTATTACCCAGTTGCAGGAAT 57.137 40.909 0.00 0.00 0.00 3.01
550 1525 4.526970 ACTATTACCCAGTTGCAGGAATG 58.473 43.478 0.00 0.00 0.00 2.67
551 1526 3.737559 ATTACCCAGTTGCAGGAATGA 57.262 42.857 0.00 0.00 0.00 2.57
552 1527 2.489938 TACCCAGTTGCAGGAATGAC 57.510 50.000 0.00 0.00 0.00 3.06
553 1528 0.773644 ACCCAGTTGCAGGAATGACT 59.226 50.000 0.00 0.00 0.00 3.41
554 1529 1.171308 CCCAGTTGCAGGAATGACTG 58.829 55.000 6.94 6.94 41.41 3.51
555 1530 1.546323 CCCAGTTGCAGGAATGACTGT 60.546 52.381 11.85 0.00 40.59 3.55
556 1531 1.538512 CCAGTTGCAGGAATGACTGTG 59.461 52.381 11.85 1.99 40.59 3.66
557 1532 2.224606 CAGTTGCAGGAATGACTGTGT 58.775 47.619 5.91 0.00 40.59 3.72
558 1533 2.620115 CAGTTGCAGGAATGACTGTGTT 59.380 45.455 5.91 0.00 40.59 3.32
559 1534 2.620115 AGTTGCAGGAATGACTGTGTTG 59.380 45.455 0.00 0.00 40.59 3.33
560 1535 2.618241 GTTGCAGGAATGACTGTGTTGA 59.382 45.455 0.00 0.00 40.59 3.18
561 1536 2.929641 TGCAGGAATGACTGTGTTGAA 58.070 42.857 0.00 0.00 40.59 2.69
562 1537 3.286353 TGCAGGAATGACTGTGTTGAAA 58.714 40.909 0.00 0.00 40.59 2.69
563 1538 3.066621 TGCAGGAATGACTGTGTTGAAAC 59.933 43.478 0.00 0.00 40.59 2.78
564 1539 3.066621 GCAGGAATGACTGTGTTGAAACA 59.933 43.478 0.00 0.00 40.59 2.83
565 1540 4.439974 GCAGGAATGACTGTGTTGAAACAA 60.440 41.667 0.00 0.00 41.21 2.83
566 1541 5.036737 CAGGAATGACTGTGTTGAAACAAC 58.963 41.667 7.55 7.55 41.21 3.32
567 1542 4.704540 AGGAATGACTGTGTTGAAACAACA 59.295 37.500 12.32 12.32 41.21 3.33
568 1543 5.036737 GGAATGACTGTGTTGAAACAACAG 58.963 41.667 15.93 16.99 41.21 3.16
569 1544 4.637483 ATGACTGTGTTGAAACAACAGG 57.363 40.909 15.93 13.83 41.21 4.00
570 1545 3.417101 TGACTGTGTTGAAACAACAGGT 58.583 40.909 15.93 16.26 41.21 4.00
571 1546 3.190327 TGACTGTGTTGAAACAACAGGTG 59.810 43.478 15.93 11.66 41.21 4.00
572 1547 3.417101 ACTGTGTTGAAACAACAGGTGA 58.583 40.909 15.93 2.70 41.21 4.02
573 1548 3.440173 ACTGTGTTGAAACAACAGGTGAG 59.560 43.478 15.93 12.02 41.21 3.51
574 1549 3.417101 TGTGTTGAAACAACAGGTGAGT 58.583 40.909 15.93 0.00 41.21 3.41
575 1550 3.823873 TGTGTTGAAACAACAGGTGAGTT 59.176 39.130 15.93 0.00 41.21 3.01
576 1551 4.279671 TGTGTTGAAACAACAGGTGAGTTT 59.720 37.500 15.93 0.00 41.21 2.66
577 1552 5.221342 TGTGTTGAAACAACAGGTGAGTTTT 60.221 36.000 15.93 0.00 41.21 2.43
578 1553 6.016192 TGTGTTGAAACAACAGGTGAGTTTTA 60.016 34.615 15.93 0.00 41.21 1.52
579 1554 6.526674 GTGTTGAAACAACAGGTGAGTTTTAG 59.473 38.462 15.93 0.00 41.21 1.85
580 1555 5.828299 TGAAACAACAGGTGAGTTTTAGG 57.172 39.130 0.00 0.00 35.77 2.69
581 1556 5.502079 TGAAACAACAGGTGAGTTTTAGGA 58.498 37.500 0.00 0.00 35.77 2.94
582 1557 5.946972 TGAAACAACAGGTGAGTTTTAGGAA 59.053 36.000 0.00 0.00 35.77 3.36
583 1558 6.434652 TGAAACAACAGGTGAGTTTTAGGAAA 59.565 34.615 0.00 0.00 35.77 3.13
584 1559 6.844097 AACAACAGGTGAGTTTTAGGAAAA 57.156 33.333 0.00 0.00 0.00 2.29
594 1569 3.974871 TTTTAGGAAAACAGACACGGC 57.025 42.857 0.00 0.00 0.00 5.68
595 1570 2.922740 TTAGGAAAACAGACACGGCT 57.077 45.000 0.00 0.00 0.00 5.52
596 1571 2.922740 TAGGAAAACAGACACGGCTT 57.077 45.000 0.00 0.00 0.00 4.35
597 1572 1.594331 AGGAAAACAGACACGGCTTC 58.406 50.000 0.00 0.00 0.00 3.86
598 1573 0.234884 GGAAAACAGACACGGCTTCG 59.765 55.000 0.00 0.00 40.22 3.79
599 1574 0.234884 GAAAACAGACACGGCTTCGG 59.765 55.000 0.00 0.00 38.38 4.30
600 1575 1.782028 AAAACAGACACGGCTTCGGC 61.782 55.000 0.00 0.00 38.38 5.54
630 1605 2.899977 GACGTTGTCGACCATCAAAAC 58.100 47.619 14.12 8.53 40.62 2.43
631 1606 2.281517 ACGTTGTCGACCATCAAAACA 58.718 42.857 14.12 0.00 40.62 2.83
632 1607 2.031191 ACGTTGTCGACCATCAAAACAC 59.969 45.455 14.12 0.00 40.62 3.32
633 1608 2.635444 GTTGTCGACCATCAAAACACG 58.365 47.619 14.12 0.00 0.00 4.49
634 1609 2.226602 TGTCGACCATCAAAACACGA 57.773 45.000 14.12 0.00 0.00 4.35
635 1610 2.761559 TGTCGACCATCAAAACACGAT 58.238 42.857 14.12 0.00 32.78 3.73
636 1611 2.734606 TGTCGACCATCAAAACACGATC 59.265 45.455 14.12 0.00 32.78 3.69
637 1612 2.734606 GTCGACCATCAAAACACGATCA 59.265 45.455 3.51 0.00 32.78 2.92
638 1613 3.185594 GTCGACCATCAAAACACGATCAA 59.814 43.478 3.51 0.00 32.78 2.57
639 1614 3.810386 TCGACCATCAAAACACGATCAAA 59.190 39.130 0.00 0.00 0.00 2.69
640 1615 3.906008 CGACCATCAAAACACGATCAAAC 59.094 43.478 0.00 0.00 0.00 2.93
641 1616 3.884169 ACCATCAAAACACGATCAAACG 58.116 40.909 0.00 0.00 39.31 3.60
642 1617 3.233578 CCATCAAAACACGATCAAACGG 58.766 45.455 0.00 0.00 37.61 4.44
643 1618 2.392933 TCAAAACACGATCAAACGGC 57.607 45.000 0.00 0.00 37.61 5.68
644 1619 1.002251 TCAAAACACGATCAAACGGCC 60.002 47.619 0.00 0.00 37.61 6.13
645 1620 1.025812 AAAACACGATCAAACGGCCA 58.974 45.000 2.24 0.00 37.61 5.36
646 1621 0.309612 AAACACGATCAAACGGCCAC 59.690 50.000 2.24 0.00 37.61 5.01
648 1623 2.740826 ACGATCAAACGGCCACGG 60.741 61.111 2.24 0.00 46.48 4.94
649 1624 2.433491 CGATCAAACGGCCACGGA 60.433 61.111 2.24 0.00 46.48 4.69
650 1625 2.452813 CGATCAAACGGCCACGGAG 61.453 63.158 2.24 0.00 46.48 4.63
651 1626 2.746277 ATCAAACGGCCACGGAGC 60.746 61.111 2.24 0.00 46.48 4.70
652 1627 3.254024 ATCAAACGGCCACGGAGCT 62.254 57.895 2.24 0.00 46.48 4.09
653 1628 3.726517 CAAACGGCCACGGAGCTG 61.727 66.667 2.24 6.24 46.48 4.24
681 1656 4.501714 GCACACGATCGGCCGGTA 62.502 66.667 27.83 7.28 0.00 4.02
682 1657 2.278596 CACACGATCGGCCGGTAG 60.279 66.667 27.83 22.58 0.00 3.18
683 1658 2.438975 ACACGATCGGCCGGTAGA 60.439 61.111 26.08 6.04 0.00 2.59
684 1659 2.048023 ACACGATCGGCCGGTAGAA 61.048 57.895 26.08 5.58 0.00 2.10
685 1660 1.299165 CACGATCGGCCGGTAGAAG 60.299 63.158 26.08 12.96 0.00 2.85
686 1661 2.335369 CGATCGGCCGGTAGAAGG 59.665 66.667 27.83 1.50 0.00 3.46
687 1662 2.487532 CGATCGGCCGGTAGAAGGT 61.488 63.158 27.83 0.95 0.00 3.50
688 1663 1.168407 CGATCGGCCGGTAGAAGGTA 61.168 60.000 27.83 1.69 0.00 3.08
689 1664 1.035139 GATCGGCCGGTAGAAGGTAA 58.965 55.000 27.83 0.77 0.00 2.85
690 1665 1.000496 GATCGGCCGGTAGAAGGTAAG 60.000 57.143 27.83 0.00 0.00 2.34
691 1666 1.227176 CGGCCGGTAGAAGGTAAGC 60.227 63.158 20.10 0.00 0.00 3.09
692 1667 1.673808 CGGCCGGTAGAAGGTAAGCT 61.674 60.000 20.10 0.00 0.00 3.74
693 1668 0.540454 GGCCGGTAGAAGGTAAGCTT 59.460 55.000 3.48 3.48 0.00 3.74
694 1669 1.065636 GGCCGGTAGAAGGTAAGCTTT 60.066 52.381 3.20 0.00 0.00 3.51
695 1670 2.617276 GGCCGGTAGAAGGTAAGCTTTT 60.617 50.000 3.20 0.00 0.00 2.27
696 1671 3.079578 GCCGGTAGAAGGTAAGCTTTTT 58.920 45.455 3.20 0.00 0.00 1.94
789 1766 3.982058 GTCTGAGTTAAAGTGTGACCTCG 59.018 47.826 0.00 0.00 0.00 4.63
792 1769 2.978489 GAGTTAAAGTGTGACCTCGACG 59.022 50.000 0.00 0.00 0.00 5.12
906 1893 6.384224 CCATCCAAATATGTTTCGATCCATG 58.616 40.000 7.40 0.00 0.00 3.66
1804 3098 7.849804 AAGAGATTAAATCGCAGTACAATGT 57.150 32.000 0.00 0.00 0.00 2.71
1805 3099 8.942338 AAGAGATTAAATCGCAGTACAATGTA 57.058 30.769 0.00 0.00 0.00 2.29
1806 3100 8.942338 AGAGATTAAATCGCAGTACAATGTAA 57.058 30.769 0.00 0.00 0.00 2.41
1807 3101 9.378551 AGAGATTAAATCGCAGTACAATGTAAA 57.621 29.630 0.00 0.00 0.00 2.01
1808 3102 9.422196 GAGATTAAATCGCAGTACAATGTAAAC 57.578 33.333 0.00 0.00 0.00 2.01
1809 3103 9.162764 AGATTAAATCGCAGTACAATGTAAACT 57.837 29.630 0.00 0.00 0.00 2.66
1810 3104 9.210426 GATTAAATCGCAGTACAATGTAAACTG 57.790 33.333 10.96 10.96 42.80 3.16
1811 3105 6.554334 AAATCGCAGTACAATGTAAACTGT 57.446 33.333 15.27 0.00 42.10 3.55
1812 3106 6.554334 AATCGCAGTACAATGTAAACTGTT 57.446 33.333 15.27 2.68 42.10 3.16
1813 3107 5.585500 TCGCAGTACAATGTAAACTGTTC 57.415 39.130 15.27 2.34 42.10 3.18
1814 3108 4.449743 TCGCAGTACAATGTAAACTGTTCC 59.550 41.667 15.27 1.77 42.10 3.62
1815 3109 4.212425 CGCAGTACAATGTAAACTGTTCCA 59.788 41.667 15.27 0.00 42.10 3.53
1816 3110 5.449304 GCAGTACAATGTAAACTGTTCCAC 58.551 41.667 15.27 0.00 42.10 4.02
1817 3111 5.675970 CAGTACAATGTAAACTGTTCCACG 58.324 41.667 7.87 0.00 36.66 4.94
1818 3112 5.235616 CAGTACAATGTAAACTGTTCCACGT 59.764 40.000 7.87 0.00 36.66 4.49
1819 3113 6.421501 CAGTACAATGTAAACTGTTCCACGTA 59.578 38.462 7.87 0.00 36.66 3.57
1820 3114 7.117236 CAGTACAATGTAAACTGTTCCACGTAT 59.883 37.037 7.87 0.00 36.66 3.06
1821 3115 8.306038 AGTACAATGTAAACTGTTCCACGTATA 58.694 33.333 0.00 0.00 0.00 1.47
1822 3116 7.355332 ACAATGTAAACTGTTCCACGTATAC 57.645 36.000 0.00 0.00 0.00 1.47
1823 3117 7.156673 ACAATGTAAACTGTTCCACGTATACT 58.843 34.615 0.56 0.00 0.00 2.12
1824 3118 7.658575 ACAATGTAAACTGTTCCACGTATACTT 59.341 33.333 0.56 0.00 0.00 2.24
1825 3119 9.142515 CAATGTAAACTGTTCCACGTATACTTA 57.857 33.333 0.56 0.00 0.00 2.24
1826 3120 8.922058 ATGTAAACTGTTCCACGTATACTTAG 57.078 34.615 0.56 0.00 0.00 2.18
1827 3121 7.885297 TGTAAACTGTTCCACGTATACTTAGT 58.115 34.615 0.56 0.00 0.00 2.24
1828 3122 8.359642 TGTAAACTGTTCCACGTATACTTAGTT 58.640 33.333 0.56 0.00 0.00 2.24
1829 3123 9.840427 GTAAACTGTTCCACGTATACTTAGTTA 57.160 33.333 0.56 0.00 0.00 2.24
1830 3124 8.748380 AAACTGTTCCACGTATACTTAGTTAC 57.252 34.615 0.56 0.00 0.00 2.50
1831 3125 7.452880 ACTGTTCCACGTATACTTAGTTACA 57.547 36.000 0.56 0.00 0.00 2.41
1832 3126 7.533426 ACTGTTCCACGTATACTTAGTTACAG 58.467 38.462 14.16 14.16 0.00 2.74
1833 3127 7.391554 ACTGTTCCACGTATACTTAGTTACAGA 59.608 37.037 18.99 0.00 0.00 3.41
1834 3128 8.284945 TGTTCCACGTATACTTAGTTACAGAT 57.715 34.615 0.56 0.00 0.00 2.90
1835 3129 8.400947 TGTTCCACGTATACTTAGTTACAGATC 58.599 37.037 0.56 0.00 0.00 2.75
1836 3130 8.400947 GTTCCACGTATACTTAGTTACAGATCA 58.599 37.037 0.56 0.00 0.00 2.92
1837 3131 8.687292 TCCACGTATACTTAGTTACAGATCAT 57.313 34.615 0.56 0.00 0.00 2.45
1838 3132 8.565416 TCCACGTATACTTAGTTACAGATCATG 58.435 37.037 0.56 0.00 0.00 3.07
1839 3133 7.808381 CCACGTATACTTAGTTACAGATCATGG 59.192 40.741 0.56 0.00 0.00 3.66
1840 3134 8.350722 CACGTATACTTAGTTACAGATCATGGT 58.649 37.037 0.56 0.00 0.00 3.55
1841 3135 9.565090 ACGTATACTTAGTTACAGATCATGGTA 57.435 33.333 0.56 0.00 0.00 3.25
1842 3136 9.823098 CGTATACTTAGTTACAGATCATGGTAC 57.177 37.037 0.56 0.00 0.00 3.34
1845 3139 7.956328 ACTTAGTTACAGATCATGGTACTGA 57.044 36.000 16.87 0.00 35.85 3.41
1846 3140 8.540507 ACTTAGTTACAGATCATGGTACTGAT 57.459 34.615 16.87 0.00 38.57 2.90
1853 3147 4.597404 GATCATGGTACTGATCTCTGCA 57.403 45.455 14.74 0.00 45.30 4.41
1854 3148 4.953667 GATCATGGTACTGATCTCTGCAA 58.046 43.478 14.74 0.00 45.30 4.08
1855 3149 5.549347 GATCATGGTACTGATCTCTGCAAT 58.451 41.667 14.74 0.00 45.30 3.56
1856 3150 6.676990 ATCATGGTACTGATCTCTGCAATA 57.323 37.500 0.00 0.00 29.85 1.90
1857 3151 6.094193 TCATGGTACTGATCTCTGCAATAG 57.906 41.667 0.00 0.00 0.00 1.73
1858 3152 5.600069 TCATGGTACTGATCTCTGCAATAGT 59.400 40.000 0.00 0.00 0.00 2.12
1859 3153 5.268118 TGGTACTGATCTCTGCAATAGTG 57.732 43.478 0.00 0.00 0.00 2.74
1860 3154 4.711846 TGGTACTGATCTCTGCAATAGTGT 59.288 41.667 0.00 0.00 0.00 3.55
1861 3155 5.187772 TGGTACTGATCTCTGCAATAGTGTT 59.812 40.000 0.00 0.00 0.00 3.32
1862 3156 5.521735 GGTACTGATCTCTGCAATAGTGTTG 59.478 44.000 0.00 0.00 0.00 3.33
1863 3157 5.411831 ACTGATCTCTGCAATAGTGTTGA 57.588 39.130 3.47 0.00 0.00 3.18
1864 3158 5.987098 ACTGATCTCTGCAATAGTGTTGAT 58.013 37.500 3.47 0.00 0.00 2.57
1865 3159 6.413052 ACTGATCTCTGCAATAGTGTTGATT 58.587 36.000 3.47 0.00 0.00 2.57
1866 3160 6.883217 ACTGATCTCTGCAATAGTGTTGATTT 59.117 34.615 3.47 0.00 0.00 2.17
1867 3161 7.065563 ACTGATCTCTGCAATAGTGTTGATTTC 59.934 37.037 3.47 0.00 0.00 2.17
1868 3162 7.108194 TGATCTCTGCAATAGTGTTGATTTCT 58.892 34.615 3.47 0.00 0.00 2.52
1869 3163 6.974932 TCTCTGCAATAGTGTTGATTTCTC 57.025 37.500 3.47 0.00 0.00 2.87
1870 3164 5.578336 TCTCTGCAATAGTGTTGATTTCTCG 59.422 40.000 3.47 0.00 0.00 4.04
1871 3165 5.237815 TCTGCAATAGTGTTGATTTCTCGT 58.762 37.500 3.47 0.00 0.00 4.18
1872 3166 5.700832 TCTGCAATAGTGTTGATTTCTCGTT 59.299 36.000 3.47 0.00 0.00 3.85
1873 3167 6.871492 TCTGCAATAGTGTTGATTTCTCGTTA 59.129 34.615 3.47 0.00 0.00 3.18
1874 3168 7.386573 TCTGCAATAGTGTTGATTTCTCGTTAA 59.613 33.333 3.47 0.00 0.00 2.01
1875 3169 7.295201 TGCAATAGTGTTGATTTCTCGTTAAC 58.705 34.615 3.47 0.00 0.00 2.01
1876 3170 7.172532 TGCAATAGTGTTGATTTCTCGTTAACT 59.827 33.333 3.47 0.00 0.00 2.24
1877 3171 8.015658 GCAATAGTGTTGATTTCTCGTTAACTT 58.984 33.333 3.47 0.00 0.00 2.66
1878 3172 9.318041 CAATAGTGTTGATTTCTCGTTAACTTG 57.682 33.333 3.71 0.00 0.00 3.16
1879 3173 8.827177 ATAGTGTTGATTTCTCGTTAACTTGA 57.173 30.769 3.71 0.00 0.00 3.02
1880 3174 7.730364 AGTGTTGATTTCTCGTTAACTTGAT 57.270 32.000 3.71 0.00 0.00 2.57
1881 3175 8.154649 AGTGTTGATTTCTCGTTAACTTGATT 57.845 30.769 3.71 0.00 0.00 2.57
1882 3176 8.070171 AGTGTTGATTTCTCGTTAACTTGATTG 58.930 33.333 3.71 0.00 0.00 2.67
1883 3177 7.323656 GTGTTGATTTCTCGTTAACTTGATTGG 59.676 37.037 3.71 0.00 0.00 3.16
1884 3178 7.012894 TGTTGATTTCTCGTTAACTTGATTGGT 59.987 33.333 3.71 0.00 0.00 3.67
1885 3179 7.129109 TGATTTCTCGTTAACTTGATTGGTC 57.871 36.000 3.71 0.00 0.00 4.02
1886 3180 6.934645 TGATTTCTCGTTAACTTGATTGGTCT 59.065 34.615 3.71 0.00 0.00 3.85
1887 3181 7.444183 TGATTTCTCGTTAACTTGATTGGTCTT 59.556 33.333 3.71 0.00 0.00 3.01
1888 3182 6.539649 TTCTCGTTAACTTGATTGGTCTTG 57.460 37.500 3.71 0.00 0.00 3.02
1889 3183 4.994852 TCTCGTTAACTTGATTGGTCTTGG 59.005 41.667 3.71 0.00 0.00 3.61
1890 3184 4.710324 TCGTTAACTTGATTGGTCTTGGT 58.290 39.130 3.71 0.00 0.00 3.67
1891 3185 4.753107 TCGTTAACTTGATTGGTCTTGGTC 59.247 41.667 3.71 0.00 0.00 4.02
1892 3186 4.083484 CGTTAACTTGATTGGTCTTGGTCC 60.083 45.833 3.71 0.00 0.00 4.46
1893 3187 3.593442 AACTTGATTGGTCTTGGTCCA 57.407 42.857 0.00 0.00 0.00 4.02
1894 3188 2.863809 ACTTGATTGGTCTTGGTCCAC 58.136 47.619 0.00 0.00 34.45 4.02
1895 3189 1.806542 CTTGATTGGTCTTGGTCCACG 59.193 52.381 0.00 0.00 34.45 4.94
1896 3190 0.036164 TGATTGGTCTTGGTCCACGG 59.964 55.000 0.00 0.00 34.45 4.94
1897 3191 0.323629 GATTGGTCTTGGTCCACGGA 59.676 55.000 0.00 0.00 34.45 4.69
1898 3192 0.324943 ATTGGTCTTGGTCCACGGAG 59.675 55.000 0.00 0.00 34.45 4.63
1899 3193 0.761323 TTGGTCTTGGTCCACGGAGA 60.761 55.000 0.00 0.00 34.45 3.71
1900 3194 0.544357 TGGTCTTGGTCCACGGAGAT 60.544 55.000 0.00 0.00 0.00 2.75
1901 3195 0.108138 GGTCTTGGTCCACGGAGATG 60.108 60.000 0.00 0.00 0.00 2.90
1902 3196 0.608640 GTCTTGGTCCACGGAGATGT 59.391 55.000 0.00 0.00 0.00 3.06
1903 3197 0.608130 TCTTGGTCCACGGAGATGTG 59.392 55.000 0.00 0.00 39.60 3.21
1904 3198 0.608130 CTTGGTCCACGGAGATGTGA 59.392 55.000 0.00 0.00 42.55 3.58
1905 3199 1.208052 CTTGGTCCACGGAGATGTGAT 59.792 52.381 0.00 0.00 42.55 3.06
1906 3200 1.275666 TGGTCCACGGAGATGTGATT 58.724 50.000 0.00 0.00 42.55 2.57
1907 3201 1.628340 TGGTCCACGGAGATGTGATTT 59.372 47.619 0.00 0.00 42.55 2.17
1908 3202 2.009774 GGTCCACGGAGATGTGATTTG 58.990 52.381 0.00 0.00 42.55 2.32
1909 3203 2.615493 GGTCCACGGAGATGTGATTTGT 60.615 50.000 0.00 0.00 42.55 2.83
1910 3204 3.369052 GGTCCACGGAGATGTGATTTGTA 60.369 47.826 0.00 0.00 42.55 2.41
1911 3205 4.250464 GTCCACGGAGATGTGATTTGTAA 58.750 43.478 0.00 0.00 42.55 2.41
1912 3206 4.693566 GTCCACGGAGATGTGATTTGTAAA 59.306 41.667 0.00 0.00 42.55 2.01
1913 3207 4.693566 TCCACGGAGATGTGATTTGTAAAC 59.306 41.667 0.00 0.00 42.55 2.01
1914 3208 4.142687 CCACGGAGATGTGATTTGTAAACC 60.143 45.833 0.00 0.00 42.55 3.27
1915 3209 3.682858 ACGGAGATGTGATTTGTAAACCG 59.317 43.478 0.00 0.00 41.85 4.44
1916 3210 3.682858 CGGAGATGTGATTTGTAAACCGT 59.317 43.478 0.00 0.00 33.44 4.83
1917 3211 4.865925 CGGAGATGTGATTTGTAAACCGTA 59.134 41.667 0.00 0.00 33.44 4.02
1918 3212 5.522460 CGGAGATGTGATTTGTAAACCGTAT 59.478 40.000 0.00 0.00 33.44 3.06
1919 3213 6.036735 CGGAGATGTGATTTGTAAACCGTATT 59.963 38.462 0.00 0.00 33.44 1.89
1920 3214 7.407337 GGAGATGTGATTTGTAAACCGTATTC 58.593 38.462 0.00 0.00 0.00 1.75
1921 3215 7.316544 AGATGTGATTTGTAAACCGTATTCC 57.683 36.000 0.00 0.00 0.00 3.01
1922 3216 7.110155 AGATGTGATTTGTAAACCGTATTCCT 58.890 34.615 0.00 0.00 0.00 3.36
1923 3217 8.262227 AGATGTGATTTGTAAACCGTATTCCTA 58.738 33.333 0.00 0.00 0.00 2.94
1924 3218 8.974060 ATGTGATTTGTAAACCGTATTCCTAT 57.026 30.769 0.00 0.00 0.00 2.57
1925 3219 8.203937 TGTGATTTGTAAACCGTATTCCTATG 57.796 34.615 0.00 0.00 0.00 2.23
1926 3220 7.130269 GTGATTTGTAAACCGTATTCCTATGC 58.870 38.462 0.00 0.00 0.00 3.14
1927 3221 5.721876 TTTGTAAACCGTATTCCTATGCG 57.278 39.130 0.00 0.00 39.25 4.73
1932 3226 3.210857 CGTATTCCTATGCGGGGTG 57.789 57.895 0.00 0.00 36.40 4.61
1933 3227 0.949105 CGTATTCCTATGCGGGGTGC 60.949 60.000 0.00 0.00 46.70 5.01
1934 3228 0.396811 GTATTCCTATGCGGGGTGCT 59.603 55.000 0.00 0.00 46.63 4.40
1935 3229 1.621814 GTATTCCTATGCGGGGTGCTA 59.378 52.381 0.00 0.00 46.63 3.49
1936 3230 1.136828 ATTCCTATGCGGGGTGCTAA 58.863 50.000 0.00 0.00 46.63 3.09
1937 3231 1.136828 TTCCTATGCGGGGTGCTAAT 58.863 50.000 0.00 0.00 46.63 1.73
1938 3232 1.136828 TCCTATGCGGGGTGCTAATT 58.863 50.000 0.00 0.00 46.63 1.40
1939 3233 1.071699 TCCTATGCGGGGTGCTAATTC 59.928 52.381 0.00 0.00 46.63 2.17
1940 3234 1.072331 CCTATGCGGGGTGCTAATTCT 59.928 52.381 0.00 0.00 46.63 2.40
1941 3235 2.487265 CCTATGCGGGGTGCTAATTCTT 60.487 50.000 0.00 0.00 46.63 2.52
1942 3236 2.143876 ATGCGGGGTGCTAATTCTTT 57.856 45.000 0.00 0.00 46.63 2.52
1943 3237 2.791347 TGCGGGGTGCTAATTCTTTA 57.209 45.000 0.00 0.00 46.63 1.85
1944 3238 3.290948 TGCGGGGTGCTAATTCTTTAT 57.709 42.857 0.00 0.00 46.63 1.40
1945 3239 3.626930 TGCGGGGTGCTAATTCTTTATT 58.373 40.909 0.00 0.00 46.63 1.40
1946 3240 3.380004 TGCGGGGTGCTAATTCTTTATTG 59.620 43.478 0.00 0.00 46.63 1.90
1947 3241 3.630312 GCGGGGTGCTAATTCTTTATTGA 59.370 43.478 0.00 0.00 41.73 2.57
1948 3242 4.097286 GCGGGGTGCTAATTCTTTATTGAA 59.903 41.667 0.00 0.00 41.73 2.69
1949 3243 5.393678 GCGGGGTGCTAATTCTTTATTGAAA 60.394 40.000 0.00 0.00 41.73 2.69
1950 3244 6.626302 CGGGGTGCTAATTCTTTATTGAAAA 58.374 36.000 0.00 0.00 0.00 2.29
1951 3245 7.093992 CGGGGTGCTAATTCTTTATTGAAAAA 58.906 34.615 0.00 0.00 0.00 1.94
1978 3272 8.807948 AATATTACAGTAAACCAGATTGCAGT 57.192 30.769 0.00 0.00 0.00 4.40
1979 3273 9.899661 AATATTACAGTAAACCAGATTGCAGTA 57.100 29.630 0.00 0.00 0.00 2.74
1980 3274 9.899661 ATATTACAGTAAACCAGATTGCAGTAA 57.100 29.630 0.00 0.00 33.76 2.24
1981 3275 8.630054 ATTACAGTAAACCAGATTGCAGTAAA 57.370 30.769 0.00 0.00 33.28 2.01
1982 3276 8.630054 TTACAGTAAACCAGATTGCAGTAAAT 57.370 30.769 0.00 0.00 29.05 1.40
1983 3277 7.145932 ACAGTAAACCAGATTGCAGTAAATC 57.854 36.000 0.00 0.00 36.91 2.17
1984 3278 6.714810 ACAGTAAACCAGATTGCAGTAAATCA 59.285 34.615 0.00 0.00 38.74 2.57
1985 3279 7.094634 ACAGTAAACCAGATTGCAGTAAATCAG 60.095 37.037 0.00 0.00 38.74 2.90
1986 3280 4.708726 AACCAGATTGCAGTAAATCAGC 57.291 40.909 0.00 0.00 38.74 4.26
1987 3281 2.679837 ACCAGATTGCAGTAAATCAGCG 59.320 45.455 0.00 0.00 38.74 5.18
1988 3282 2.032550 CCAGATTGCAGTAAATCAGCGG 59.967 50.000 0.00 0.00 38.74 5.52
1989 3283 1.672881 AGATTGCAGTAAATCAGCGGC 59.327 47.619 0.00 0.00 38.74 6.53
1990 3284 1.672881 GATTGCAGTAAATCAGCGGCT 59.327 47.619 0.00 0.00 36.69 5.52
1991 3285 2.394930 TTGCAGTAAATCAGCGGCTA 57.605 45.000 0.26 0.00 0.00 3.93
1992 3286 1.939974 TGCAGTAAATCAGCGGCTAG 58.060 50.000 0.26 0.00 0.00 3.42
1993 3287 1.207089 TGCAGTAAATCAGCGGCTAGT 59.793 47.619 0.26 0.00 0.00 2.57
1994 3288 1.861575 GCAGTAAATCAGCGGCTAGTC 59.138 52.381 0.26 0.00 0.00 2.59
1995 3289 2.120232 CAGTAAATCAGCGGCTAGTCG 58.880 52.381 13.55 13.55 0.00 4.18
2005 3299 2.713770 GCTAGTCGCCGTGATCGA 59.286 61.111 0.00 0.00 39.71 3.59
2006 3300 1.283181 GCTAGTCGCCGTGATCGAT 59.717 57.895 0.00 0.00 38.29 3.59
2007 3301 0.317938 GCTAGTCGCCGTGATCGATT 60.318 55.000 0.00 0.00 38.29 3.34
2008 3302 1.399572 CTAGTCGCCGTGATCGATTG 58.600 55.000 0.00 0.00 38.29 2.67
2009 3303 0.594028 TAGTCGCCGTGATCGATTGC 60.594 55.000 0.00 0.00 38.29 3.56
2010 3304 2.164663 GTCGCCGTGATCGATTGCA 61.165 57.895 0.00 0.00 38.29 4.08
2011 3305 1.878069 TCGCCGTGATCGATTGCAG 60.878 57.895 0.00 0.00 39.71 4.41
2012 3306 2.325857 GCCGTGATCGATTGCAGC 59.674 61.111 0.00 0.00 39.71 5.25
2013 3307 2.176273 GCCGTGATCGATTGCAGCT 61.176 57.895 0.00 0.00 39.71 4.24
2014 3308 1.709147 GCCGTGATCGATTGCAGCTT 61.709 55.000 0.00 0.00 39.71 3.74
2015 3309 0.302890 CCGTGATCGATTGCAGCTTC 59.697 55.000 0.00 0.00 39.71 3.86
2016 3310 1.284657 CGTGATCGATTGCAGCTTCT 58.715 50.000 0.00 0.00 39.71 2.85
2017 3311 1.005242 CGTGATCGATTGCAGCTTCTG 60.005 52.381 0.00 0.00 39.71 3.02
2018 3312 1.329906 GTGATCGATTGCAGCTTCTGG 59.670 52.381 0.00 0.00 31.21 3.86
2019 3313 1.207811 TGATCGATTGCAGCTTCTGGA 59.792 47.619 0.00 0.00 31.21 3.86
2020 3314 2.158856 TGATCGATTGCAGCTTCTGGAT 60.159 45.455 0.00 0.00 30.73 3.41
2021 3315 1.945387 TCGATTGCAGCTTCTGGATC 58.055 50.000 0.00 0.00 30.73 3.36
2022 3316 0.580578 CGATTGCAGCTTCTGGATCG 59.419 55.000 0.00 0.00 30.73 3.69
2023 3317 1.661341 GATTGCAGCTTCTGGATCGT 58.339 50.000 0.00 0.00 30.73 3.73
2024 3318 2.799562 CGATTGCAGCTTCTGGATCGTA 60.800 50.000 5.25 0.00 32.90 3.43
2025 3319 2.760634 TTGCAGCTTCTGGATCGTAA 57.239 45.000 0.00 0.00 30.73 3.18
2026 3320 2.760634 TGCAGCTTCTGGATCGTAAA 57.239 45.000 0.00 0.00 31.21 2.01
2027 3321 2.346803 TGCAGCTTCTGGATCGTAAAC 58.653 47.619 0.00 0.00 31.21 2.01
2028 3322 1.666189 GCAGCTTCTGGATCGTAAACC 59.334 52.381 0.00 0.00 31.21 3.27
2029 3323 2.935238 GCAGCTTCTGGATCGTAAACCA 60.935 50.000 0.00 0.00 34.81 3.67
2038 3332 5.110814 TGGATCGTAAACCAGATTGGATT 57.889 39.130 1.40 0.00 40.96 3.01
2045 3339 9.675464 ATCGTAAACCAGATTGGATTTTAGTAA 57.325 29.630 1.40 0.00 40.96 2.24
2073 3371 5.594724 AAATTGTTCCACATCAAATTGCG 57.405 34.783 0.00 0.00 0.00 4.85
2150 3448 5.401531 AAAGATTCGGTCTAGCACAGTAA 57.598 39.130 0.00 0.00 35.67 2.24
2254 4195 9.690913 AGGAAGAAAGAATGATGACATATTCAA 57.309 29.630 14.60 0.00 37.92 2.69
2294 4235 6.655003 CACAGTTTCTAAGCTCCCAAGAAATA 59.345 38.462 13.37 0.00 40.33 1.40
2295 4236 7.174946 CACAGTTTCTAAGCTCCCAAGAAATAA 59.825 37.037 13.37 0.00 40.33 1.40
2311 4252 7.383300 CCAAGAAATAAAGCTTTCTGGTTGAAG 59.617 37.037 16.57 0.00 43.05 3.02
2347 4288 3.340928 CAGCATGTCATCCAGTGAAAGA 58.659 45.455 0.00 0.00 38.90 2.52
2393 4334 6.071391 CCCAAGCTTTATTTACACATGTCCTT 60.071 38.462 0.00 0.00 0.00 3.36
2409 4350 3.329225 TGTCCTTTGTGTACATCCATGGA 59.671 43.478 18.88 18.88 0.00 3.41
2417 4358 6.742953 TTGTGTACATCCATGGAGACACTGA 61.743 44.000 34.50 26.63 43.63 3.41
2449 4415 6.618287 TTTATTCTGCATGCACCTACATAC 57.382 37.500 18.46 0.00 0.00 2.39
2451 4417 1.836802 TCTGCATGCACCTACATACCA 59.163 47.619 18.46 0.00 0.00 3.25
2495 4463 4.142026 ACGGCTGTACTGTAGCATTTCATA 60.142 41.667 0.00 0.00 42.88 2.15
2501 4469 9.429359 GCTGTACTGTAGCATTTCATATATTCT 57.571 33.333 1.46 0.00 40.81 2.40
2549 4520 5.831525 AGTTTTCCCGACAGAACCTAAAAAT 59.168 36.000 0.00 0.00 0.00 1.82
2553 4525 8.496707 TTTCCCGACAGAACCTAAAAATATAC 57.503 34.615 0.00 0.00 0.00 1.47
2570 4543 8.506168 AAAATATACATCCAATGACAACTCGT 57.494 30.769 0.00 0.00 0.00 4.18
2611 4588 1.949525 CAGAATGTAAGCCCGGGATTG 59.050 52.381 33.89 12.45 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.073678 TGCGTCATAGTGTTGCAGAAAT 58.926 40.909 0.00 0.00 0.00 2.17
77 84 4.451150 TAGAGGCCGCGGCTGTTG 62.451 66.667 45.23 12.13 38.98 3.33
123 131 1.071471 CGTCAAAGGAGTGCCCACT 59.929 57.895 0.00 0.00 45.84 4.00
195 206 4.760715 ACACGATATTAGAGCATACGAGGT 59.239 41.667 0.00 0.00 0.00 3.85
211 222 0.172578 CGTTGGAGGAGCACACGATA 59.827 55.000 0.00 0.00 0.00 2.92
246 257 8.709308 ACATAGGTCTTGCTTCAGAAATATAGT 58.291 33.333 0.00 0.00 0.00 2.12
312 327 7.877003 TCTACAACACAAGTCTTGTTTCAAAA 58.123 30.769 15.73 0.21 43.23 2.44
313 328 7.441890 TCTACAACACAAGTCTTGTTTCAAA 57.558 32.000 15.73 1.69 43.23 2.69
314 329 7.441890 TTCTACAACACAAGTCTTGTTTCAA 57.558 32.000 15.73 0.69 43.23 2.69
426 1401 2.782192 CGACTAAAGCAGGTACGAATCG 59.218 50.000 0.00 0.00 0.00 3.34
491 1466 1.876714 CCGCGTCTGTTATCCACCG 60.877 63.158 4.92 0.00 0.00 4.94
508 1483 4.753662 GGGGGTTTCGGGGAAGCC 62.754 72.222 0.00 0.00 44.48 4.35
522 1497 2.105993 GCAACTGGGTAATAGTAGGGGG 59.894 54.545 0.00 0.00 0.00 5.40
523 1498 2.775384 TGCAACTGGGTAATAGTAGGGG 59.225 50.000 0.00 0.00 0.00 4.79
524 1499 3.181454 CCTGCAACTGGGTAATAGTAGGG 60.181 52.174 0.00 0.00 0.00 3.53
525 1500 3.709653 TCCTGCAACTGGGTAATAGTAGG 59.290 47.826 0.00 0.00 0.00 3.18
526 1501 5.353394 TTCCTGCAACTGGGTAATAGTAG 57.647 43.478 0.00 0.00 0.00 2.57
527 1502 5.427157 TCATTCCTGCAACTGGGTAATAGTA 59.573 40.000 0.00 0.00 0.00 1.82
528 1503 4.227300 TCATTCCTGCAACTGGGTAATAGT 59.773 41.667 0.00 0.00 0.00 2.12
529 1504 4.576463 GTCATTCCTGCAACTGGGTAATAG 59.424 45.833 0.00 0.00 0.00 1.73
530 1505 4.227300 AGTCATTCCTGCAACTGGGTAATA 59.773 41.667 0.00 0.00 0.00 0.98
531 1506 3.010584 AGTCATTCCTGCAACTGGGTAAT 59.989 43.478 0.00 0.00 0.00 1.89
532 1507 2.375174 AGTCATTCCTGCAACTGGGTAA 59.625 45.455 0.00 0.00 0.00 2.85
533 1508 1.985159 AGTCATTCCTGCAACTGGGTA 59.015 47.619 0.00 0.00 0.00 3.69
534 1509 0.773644 AGTCATTCCTGCAACTGGGT 59.226 50.000 0.00 0.00 0.00 4.51
535 1510 1.171308 CAGTCATTCCTGCAACTGGG 58.829 55.000 6.13 0.00 36.36 4.45
536 1511 1.538512 CACAGTCATTCCTGCAACTGG 59.461 52.381 16.20 1.68 42.66 4.00
537 1512 2.224606 ACACAGTCATTCCTGCAACTG 58.775 47.619 11.50 11.50 43.69 3.16
538 1513 2.620115 CAACACAGTCATTCCTGCAACT 59.380 45.455 0.00 0.00 35.83 3.16
539 1514 2.618241 TCAACACAGTCATTCCTGCAAC 59.382 45.455 0.00 0.00 35.83 4.17
540 1515 2.929641 TCAACACAGTCATTCCTGCAA 58.070 42.857 0.00 0.00 35.83 4.08
541 1516 2.636647 TCAACACAGTCATTCCTGCA 57.363 45.000 0.00 0.00 35.83 4.41
542 1517 3.066621 TGTTTCAACACAGTCATTCCTGC 59.933 43.478 0.00 0.00 35.83 4.85
543 1518 4.898829 TGTTTCAACACAGTCATTCCTG 57.101 40.909 0.00 0.00 38.45 3.86
544 1519 4.704540 TGTTGTTTCAACACAGTCATTCCT 59.295 37.500 10.63 0.00 38.92 3.36
545 1520 4.992688 TGTTGTTTCAACACAGTCATTCC 58.007 39.130 10.63 0.00 38.92 3.01
546 1521 5.036737 CCTGTTGTTTCAACACAGTCATTC 58.963 41.667 10.63 0.00 38.92 2.67
547 1522 4.462483 ACCTGTTGTTTCAACACAGTCATT 59.538 37.500 10.63 2.32 38.92 2.57
548 1523 4.016444 ACCTGTTGTTTCAACACAGTCAT 58.984 39.130 10.63 4.67 38.92 3.06
549 1524 3.190327 CACCTGTTGTTTCAACACAGTCA 59.810 43.478 10.63 4.75 38.92 3.41
550 1525 3.438781 TCACCTGTTGTTTCAACACAGTC 59.561 43.478 10.63 1.52 38.92 3.51
551 1526 3.417101 TCACCTGTTGTTTCAACACAGT 58.583 40.909 10.63 8.77 38.92 3.55
552 1527 3.440173 ACTCACCTGTTGTTTCAACACAG 59.560 43.478 10.63 11.97 38.92 3.66
553 1528 3.417101 ACTCACCTGTTGTTTCAACACA 58.583 40.909 10.63 1.09 38.92 3.72
554 1529 4.434713 AACTCACCTGTTGTTTCAACAC 57.565 40.909 10.63 0.00 38.92 3.32
555 1530 5.461032 AAAACTCACCTGTTGTTTCAACA 57.539 34.783 13.40 13.40 37.08 3.33
556 1531 6.033966 CCTAAAACTCACCTGTTGTTTCAAC 58.966 40.000 5.78 5.78 33.45 3.18
557 1532 5.946972 TCCTAAAACTCACCTGTTGTTTCAA 59.053 36.000 0.00 0.00 33.45 2.69
558 1533 5.502079 TCCTAAAACTCACCTGTTGTTTCA 58.498 37.500 0.00 0.00 33.45 2.69
559 1534 6.445357 TTCCTAAAACTCACCTGTTGTTTC 57.555 37.500 0.00 0.00 33.45 2.78
560 1535 6.844097 TTTCCTAAAACTCACCTGTTGTTT 57.156 33.333 0.00 0.00 35.71 2.83
561 1536 6.627243 GTTTTCCTAAAACTCACCTGTTGTT 58.373 36.000 7.78 0.00 45.55 2.83
562 1537 6.203808 GTTTTCCTAAAACTCACCTGTTGT 57.796 37.500 7.78 0.00 45.55 3.32
574 1549 3.547746 AGCCGTGTCTGTTTTCCTAAAA 58.452 40.909 0.00 0.00 0.00 1.52
575 1550 3.202829 AGCCGTGTCTGTTTTCCTAAA 57.797 42.857 0.00 0.00 0.00 1.85
576 1551 2.922740 AGCCGTGTCTGTTTTCCTAA 57.077 45.000 0.00 0.00 0.00 2.69
577 1552 2.762745 GAAGCCGTGTCTGTTTTCCTA 58.237 47.619 0.00 0.00 0.00 2.94
578 1553 1.594331 GAAGCCGTGTCTGTTTTCCT 58.406 50.000 0.00 0.00 0.00 3.36
579 1554 0.234884 CGAAGCCGTGTCTGTTTTCC 59.765 55.000 0.00 0.00 0.00 3.13
580 1555 0.234884 CCGAAGCCGTGTCTGTTTTC 59.765 55.000 0.00 0.00 0.00 2.29
581 1556 1.782028 GCCGAAGCCGTGTCTGTTTT 61.782 55.000 0.00 0.00 0.00 2.43
582 1557 2.251642 GCCGAAGCCGTGTCTGTTT 61.252 57.895 0.00 0.00 0.00 2.83
583 1558 2.665185 GCCGAAGCCGTGTCTGTT 60.665 61.111 0.00 0.00 0.00 3.16
606 1581 3.291101 ATGGTCGACAACGTCCCCG 62.291 63.158 18.91 0.00 44.47 5.73
607 1582 1.447314 GATGGTCGACAACGTCCCC 60.447 63.158 18.91 0.00 44.47 4.81
608 1583 0.320073 TTGATGGTCGACAACGTCCC 60.320 55.000 18.91 0.00 44.47 4.46
609 1584 1.504359 TTTGATGGTCGACAACGTCC 58.496 50.000 18.91 0.00 45.08 4.79
610 1585 2.285756 TGTTTTGATGGTCGACAACGTC 59.714 45.455 18.91 12.02 40.69 4.34
611 1586 2.031191 GTGTTTTGATGGTCGACAACGT 59.969 45.455 18.91 1.61 40.69 3.99
612 1587 2.635444 GTGTTTTGATGGTCGACAACG 58.365 47.619 18.91 0.00 41.26 4.10
613 1588 2.285756 TCGTGTTTTGATGGTCGACAAC 59.714 45.455 18.91 12.15 0.00 3.32
614 1589 2.552031 TCGTGTTTTGATGGTCGACAA 58.448 42.857 18.91 6.46 0.00 3.18
615 1590 2.226602 TCGTGTTTTGATGGTCGACA 57.773 45.000 18.91 3.91 0.00 4.35
616 1591 2.734606 TGATCGTGTTTTGATGGTCGAC 59.265 45.455 7.13 7.13 0.00 4.20
617 1592 3.033368 TGATCGTGTTTTGATGGTCGA 57.967 42.857 0.00 0.00 0.00 4.20
618 1593 3.804518 TTGATCGTGTTTTGATGGTCG 57.195 42.857 0.00 0.00 0.00 4.79
619 1594 3.906008 CGTTTGATCGTGTTTTGATGGTC 59.094 43.478 0.00 0.00 0.00 4.02
620 1595 3.304391 CCGTTTGATCGTGTTTTGATGGT 60.304 43.478 0.00 0.00 0.00 3.55
621 1596 3.233578 CCGTTTGATCGTGTTTTGATGG 58.766 45.455 0.00 0.00 0.00 3.51
622 1597 2.656422 GCCGTTTGATCGTGTTTTGATG 59.344 45.455 0.00 0.00 0.00 3.07
623 1598 2.351350 GGCCGTTTGATCGTGTTTTGAT 60.351 45.455 0.00 0.00 0.00 2.57
624 1599 1.002251 GGCCGTTTGATCGTGTTTTGA 60.002 47.619 0.00 0.00 0.00 2.69
625 1600 1.268794 TGGCCGTTTGATCGTGTTTTG 60.269 47.619 0.00 0.00 0.00 2.44
626 1601 1.025812 TGGCCGTTTGATCGTGTTTT 58.974 45.000 0.00 0.00 0.00 2.43
627 1602 0.309612 GTGGCCGTTTGATCGTGTTT 59.690 50.000 0.00 0.00 0.00 2.83
628 1603 1.837538 CGTGGCCGTTTGATCGTGTT 61.838 55.000 0.00 0.00 0.00 3.32
629 1604 2.314647 CGTGGCCGTTTGATCGTGT 61.315 57.895 0.00 0.00 0.00 4.49
630 1605 2.474266 CGTGGCCGTTTGATCGTG 59.526 61.111 0.00 0.00 0.00 4.35
631 1606 2.740826 CCGTGGCCGTTTGATCGT 60.741 61.111 0.00 0.00 0.00 3.73
632 1607 2.433491 TCCGTGGCCGTTTGATCG 60.433 61.111 0.00 0.00 0.00 3.69
633 1608 2.750888 GCTCCGTGGCCGTTTGATC 61.751 63.158 0.00 0.00 0.00 2.92
634 1609 2.746277 GCTCCGTGGCCGTTTGAT 60.746 61.111 0.00 0.00 0.00 2.57
635 1610 3.936203 AGCTCCGTGGCCGTTTGA 61.936 61.111 0.00 0.00 0.00 2.69
636 1611 3.726517 CAGCTCCGTGGCCGTTTG 61.727 66.667 0.00 0.00 0.00 2.93
664 1639 4.501714 TACCGGCCGATCGTGTGC 62.502 66.667 30.73 10.32 0.00 4.57
665 1640 2.274232 TTCTACCGGCCGATCGTGTG 62.274 60.000 30.73 10.69 0.00 3.82
666 1641 2.001361 CTTCTACCGGCCGATCGTGT 62.001 60.000 30.73 18.38 0.00 4.49
667 1642 1.299165 CTTCTACCGGCCGATCGTG 60.299 63.158 30.73 12.43 0.00 4.35
668 1643 2.487532 CCTTCTACCGGCCGATCGT 61.488 63.158 30.73 19.22 0.00 3.73
669 1644 1.168407 TACCTTCTACCGGCCGATCG 61.168 60.000 30.73 13.32 0.00 3.69
670 1645 1.000496 CTTACCTTCTACCGGCCGATC 60.000 57.143 30.73 0.00 0.00 3.69
671 1646 1.038280 CTTACCTTCTACCGGCCGAT 58.962 55.000 30.73 14.28 0.00 4.18
672 1647 1.669999 GCTTACCTTCTACCGGCCGA 61.670 60.000 30.73 6.52 0.00 5.54
673 1648 1.227176 GCTTACCTTCTACCGGCCG 60.227 63.158 21.04 21.04 0.00 6.13
674 1649 0.540454 AAGCTTACCTTCTACCGGCC 59.460 55.000 0.00 0.00 0.00 6.13
675 1650 2.398252 AAAGCTTACCTTCTACCGGC 57.602 50.000 0.00 0.00 31.99 6.13
724 1699 4.927267 TGATCCTGGTAGTGTCCATTTT 57.073 40.909 0.00 0.00 36.84 1.82
725 1700 4.228210 ACATGATCCTGGTAGTGTCCATTT 59.772 41.667 0.00 0.00 36.84 2.32
726 1701 3.782523 ACATGATCCTGGTAGTGTCCATT 59.217 43.478 0.00 0.00 36.84 3.16
727 1702 3.387962 ACATGATCCTGGTAGTGTCCAT 58.612 45.455 0.00 0.00 36.84 3.41
728 1703 2.832838 ACATGATCCTGGTAGTGTCCA 58.167 47.619 0.00 0.00 36.00 4.02
729 1704 5.163301 ACAATACATGATCCTGGTAGTGTCC 60.163 44.000 12.76 0.00 40.90 4.02
771 1746 2.978489 CGTCGAGGTCACACTTTAACTC 59.022 50.000 0.00 0.00 0.00 3.01
772 1747 2.360165 ACGTCGAGGTCACACTTTAACT 59.640 45.455 4.63 0.00 0.00 2.24
789 1766 1.404391 TCGGAGAGCTATTTGGACGTC 59.596 52.381 7.13 7.13 0.00 4.34
792 1769 6.483640 ACATTTAATCGGAGAGCTATTTGGAC 59.516 38.462 0.00 0.00 43.63 4.02
906 1893 4.040376 GGATTCACGTATCTGTTACCGAC 58.960 47.826 0.00 0.00 0.00 4.79
1245 2265 2.268920 GCCTCCTTCATGTCGCCA 59.731 61.111 0.00 0.00 0.00 5.69
1789 3083 6.348213 GGAACAGTTTACATTGTACTGCGATT 60.348 38.462 16.21 6.67 42.28 3.34
1790 3084 5.121768 GGAACAGTTTACATTGTACTGCGAT 59.878 40.000 16.21 6.38 42.28 4.58
1791 3085 4.449743 GGAACAGTTTACATTGTACTGCGA 59.550 41.667 16.21 0.00 42.28 5.10
1792 3086 4.212425 TGGAACAGTTTACATTGTACTGCG 59.788 41.667 16.21 1.66 42.28 5.18
1793 3087 5.449304 GTGGAACAGTTTACATTGTACTGC 58.551 41.667 16.21 4.86 41.80 4.40
1794 3088 5.235616 ACGTGGAACAGTTTACATTGTACTG 59.764 40.000 15.14 15.14 41.80 2.74
1795 3089 5.362263 ACGTGGAACAGTTTACATTGTACT 58.638 37.500 0.00 0.00 41.80 2.73
1796 3090 5.662211 ACGTGGAACAGTTTACATTGTAC 57.338 39.130 0.00 0.00 41.80 2.90
1797 3091 8.306038 AGTATACGTGGAACAGTTTACATTGTA 58.694 33.333 0.00 0.00 41.80 2.41
1798 3092 7.156673 AGTATACGTGGAACAGTTTACATTGT 58.843 34.615 0.00 0.00 41.80 2.71
1799 3093 7.591006 AGTATACGTGGAACAGTTTACATTG 57.409 36.000 0.00 0.00 41.80 2.82
1800 3094 9.362539 CTAAGTATACGTGGAACAGTTTACATT 57.637 33.333 0.00 0.00 41.80 2.71
1801 3095 8.526147 ACTAAGTATACGTGGAACAGTTTACAT 58.474 33.333 9.05 0.00 41.80 2.29
1802 3096 7.885297 ACTAAGTATACGTGGAACAGTTTACA 58.115 34.615 9.05 0.00 41.80 2.41
1803 3097 8.748380 AACTAAGTATACGTGGAACAGTTTAC 57.252 34.615 9.05 0.00 41.80 2.01
1804 3098 9.840427 GTAACTAAGTATACGTGGAACAGTTTA 57.160 33.333 9.05 0.00 41.80 2.01
1805 3099 8.359642 TGTAACTAAGTATACGTGGAACAGTTT 58.640 33.333 9.05 0.00 41.80 2.66
1806 3100 7.885297 TGTAACTAAGTATACGTGGAACAGTT 58.115 34.615 9.05 8.65 41.80 3.16
1807 3101 7.391554 TCTGTAACTAAGTATACGTGGAACAGT 59.608 37.037 24.48 11.30 41.80 3.55
1808 3102 7.755591 TCTGTAACTAAGTATACGTGGAACAG 58.244 38.462 22.23 22.23 41.80 3.16
1809 3103 7.686438 TCTGTAACTAAGTATACGTGGAACA 57.314 36.000 9.05 10.62 35.74 3.18
1810 3104 8.400947 TGATCTGTAACTAAGTATACGTGGAAC 58.599 37.037 9.05 7.16 0.00 3.62
1811 3105 8.510243 TGATCTGTAACTAAGTATACGTGGAA 57.490 34.615 9.05 0.00 0.00 3.53
1812 3106 8.565416 CATGATCTGTAACTAAGTATACGTGGA 58.435 37.037 9.05 0.00 0.00 4.02
1813 3107 7.808381 CCATGATCTGTAACTAAGTATACGTGG 59.192 40.741 0.00 0.94 0.00 4.94
1814 3108 8.350722 ACCATGATCTGTAACTAAGTATACGTG 58.649 37.037 0.00 0.00 0.00 4.49
1815 3109 8.461249 ACCATGATCTGTAACTAAGTATACGT 57.539 34.615 0.00 0.00 0.00 3.57
1816 3110 9.823098 GTACCATGATCTGTAACTAAGTATACG 57.177 37.037 0.00 0.00 0.00 3.06
1819 3113 9.642343 TCAGTACCATGATCTGTAACTAAGTAT 57.358 33.333 0.00 0.00 0.00 2.12
1820 3114 9.642343 ATCAGTACCATGATCTGTAACTAAGTA 57.358 33.333 0.00 0.00 34.84 2.24
1821 3115 7.956328 TCAGTACCATGATCTGTAACTAAGT 57.044 36.000 0.00 0.00 0.00 2.24
1833 3127 5.563876 ATTGCAGAGATCAGTACCATGAT 57.436 39.130 0.00 0.00 42.62 2.45
1834 3128 5.600069 ACTATTGCAGAGATCAGTACCATGA 59.400 40.000 4.81 0.00 0.00 3.07
1835 3129 5.695363 CACTATTGCAGAGATCAGTACCATG 59.305 44.000 4.81 0.00 0.00 3.66
1836 3130 5.365025 ACACTATTGCAGAGATCAGTACCAT 59.635 40.000 4.81 0.00 0.00 3.55
1837 3131 4.711846 ACACTATTGCAGAGATCAGTACCA 59.288 41.667 4.81 0.00 0.00 3.25
1838 3132 5.269505 ACACTATTGCAGAGATCAGTACC 57.730 43.478 4.81 0.00 0.00 3.34
1839 3133 6.333416 TCAACACTATTGCAGAGATCAGTAC 58.667 40.000 4.81 0.00 0.00 2.73
1840 3134 6.530019 TCAACACTATTGCAGAGATCAGTA 57.470 37.500 4.81 0.00 0.00 2.74
1841 3135 5.411831 TCAACACTATTGCAGAGATCAGT 57.588 39.130 4.81 0.00 0.00 3.41
1842 3136 6.922247 AATCAACACTATTGCAGAGATCAG 57.078 37.500 4.81 0.00 0.00 2.90
1843 3137 7.108194 AGAAATCAACACTATTGCAGAGATCA 58.892 34.615 4.81 0.00 0.00 2.92
1844 3138 7.516470 CGAGAAATCAACACTATTGCAGAGATC 60.516 40.741 4.81 0.00 0.00 2.75
1845 3139 6.257411 CGAGAAATCAACACTATTGCAGAGAT 59.743 38.462 4.81 0.00 0.00 2.75
1846 3140 5.578336 CGAGAAATCAACACTATTGCAGAGA 59.422 40.000 4.81 0.00 0.00 3.10
1847 3141 5.349817 ACGAGAAATCAACACTATTGCAGAG 59.650 40.000 0.00 0.00 0.00 3.35
1848 3142 5.237815 ACGAGAAATCAACACTATTGCAGA 58.762 37.500 0.00 0.00 0.00 4.26
1849 3143 5.536554 ACGAGAAATCAACACTATTGCAG 57.463 39.130 0.00 0.00 0.00 4.41
1850 3144 5.940192 AACGAGAAATCAACACTATTGCA 57.060 34.783 0.00 0.00 0.00 4.08
1851 3145 7.519002 AGTTAACGAGAAATCAACACTATTGC 58.481 34.615 0.00 0.00 0.00 3.56
1852 3146 9.318041 CAAGTTAACGAGAAATCAACACTATTG 57.682 33.333 0.00 0.00 0.00 1.90
1853 3147 9.268268 TCAAGTTAACGAGAAATCAACACTATT 57.732 29.630 0.00 0.00 0.00 1.73
1854 3148 8.827177 TCAAGTTAACGAGAAATCAACACTAT 57.173 30.769 0.00 0.00 0.00 2.12
1855 3149 8.827177 ATCAAGTTAACGAGAAATCAACACTA 57.173 30.769 0.00 0.00 0.00 2.74
1856 3150 7.730364 ATCAAGTTAACGAGAAATCAACACT 57.270 32.000 0.00 0.00 0.00 3.55
1857 3151 7.323656 CCAATCAAGTTAACGAGAAATCAACAC 59.676 37.037 0.00 0.00 0.00 3.32
1858 3152 7.012894 ACCAATCAAGTTAACGAGAAATCAACA 59.987 33.333 0.00 0.00 0.00 3.33
1859 3153 7.360361 ACCAATCAAGTTAACGAGAAATCAAC 58.640 34.615 0.00 0.00 0.00 3.18
1860 3154 7.444183 AGACCAATCAAGTTAACGAGAAATCAA 59.556 33.333 0.00 0.00 0.00 2.57
1861 3155 6.934645 AGACCAATCAAGTTAACGAGAAATCA 59.065 34.615 0.00 0.00 0.00 2.57
1862 3156 7.365840 AGACCAATCAAGTTAACGAGAAATC 57.634 36.000 0.00 0.73 0.00 2.17
1863 3157 7.308589 CCAAGACCAATCAAGTTAACGAGAAAT 60.309 37.037 0.00 0.00 0.00 2.17
1864 3158 6.017440 CCAAGACCAATCAAGTTAACGAGAAA 60.017 38.462 0.00 0.00 0.00 2.52
1865 3159 5.468746 CCAAGACCAATCAAGTTAACGAGAA 59.531 40.000 0.00 0.00 0.00 2.87
1866 3160 4.994852 CCAAGACCAATCAAGTTAACGAGA 59.005 41.667 0.00 2.76 0.00 4.04
1867 3161 4.755123 ACCAAGACCAATCAAGTTAACGAG 59.245 41.667 0.00 0.00 0.00 4.18
1868 3162 4.710324 ACCAAGACCAATCAAGTTAACGA 58.290 39.130 0.00 0.00 0.00 3.85
1869 3163 4.083484 GGACCAAGACCAATCAAGTTAACG 60.083 45.833 0.00 0.00 0.00 3.18
1870 3164 4.825085 TGGACCAAGACCAATCAAGTTAAC 59.175 41.667 0.00 0.00 34.25 2.01
1871 3165 4.825085 GTGGACCAAGACCAATCAAGTTAA 59.175 41.667 0.00 0.00 39.22 2.01
1872 3166 4.394729 GTGGACCAAGACCAATCAAGTTA 58.605 43.478 0.00 0.00 39.22 2.24
1873 3167 3.222603 GTGGACCAAGACCAATCAAGTT 58.777 45.455 0.00 0.00 39.22 2.66
1874 3168 2.810400 CGTGGACCAAGACCAATCAAGT 60.810 50.000 0.36 0.00 39.22 3.16
1875 3169 1.806542 CGTGGACCAAGACCAATCAAG 59.193 52.381 0.36 0.00 39.22 3.02
1876 3170 1.544537 CCGTGGACCAAGACCAATCAA 60.545 52.381 9.22 0.00 39.22 2.57
1877 3171 0.036164 CCGTGGACCAAGACCAATCA 59.964 55.000 9.22 0.00 39.22 2.57
1878 3172 0.323629 TCCGTGGACCAAGACCAATC 59.676 55.000 9.22 0.00 39.22 2.67
1879 3173 0.324943 CTCCGTGGACCAAGACCAAT 59.675 55.000 9.22 0.00 39.22 3.16
1880 3174 0.761323 TCTCCGTGGACCAAGACCAA 60.761 55.000 9.22 0.00 39.22 3.67
1881 3175 0.544357 ATCTCCGTGGACCAAGACCA 60.544 55.000 9.22 0.00 34.84 4.02
1882 3176 0.108138 CATCTCCGTGGACCAAGACC 60.108 60.000 9.22 0.00 0.00 3.85
1883 3177 0.608640 ACATCTCCGTGGACCAAGAC 59.391 55.000 9.22 0.00 0.00 3.01
1884 3178 0.608130 CACATCTCCGTGGACCAAGA 59.392 55.000 9.22 2.72 33.05 3.02
1885 3179 0.608130 TCACATCTCCGTGGACCAAG 59.392 55.000 0.00 0.00 37.50 3.61
1886 3180 1.275666 ATCACATCTCCGTGGACCAA 58.724 50.000 0.00 0.00 37.50 3.67
1887 3181 1.275666 AATCACATCTCCGTGGACCA 58.724 50.000 0.00 0.00 37.50 4.02
1888 3182 2.009774 CAAATCACATCTCCGTGGACC 58.990 52.381 0.00 0.00 37.50 4.46
1889 3183 2.699954 ACAAATCACATCTCCGTGGAC 58.300 47.619 0.00 0.00 37.50 4.02
1890 3184 4.545208 TTACAAATCACATCTCCGTGGA 57.455 40.909 0.00 0.00 37.50 4.02
1891 3185 4.142687 GGTTTACAAATCACATCTCCGTGG 60.143 45.833 0.00 0.00 37.50 4.94
1892 3186 4.435518 CGGTTTACAAATCACATCTCCGTG 60.436 45.833 0.00 0.00 38.29 4.94
1893 3187 3.682858 CGGTTTACAAATCACATCTCCGT 59.317 43.478 0.00 0.00 0.00 4.69
1894 3188 3.682858 ACGGTTTACAAATCACATCTCCG 59.317 43.478 0.00 0.00 40.00 4.63
1895 3189 6.920569 ATACGGTTTACAAATCACATCTCC 57.079 37.500 0.00 0.00 0.00 3.71
1896 3190 7.280205 AGGAATACGGTTTACAAATCACATCTC 59.720 37.037 0.00 0.00 0.00 2.75
1897 3191 7.110155 AGGAATACGGTTTACAAATCACATCT 58.890 34.615 0.00 0.00 0.00 2.90
1898 3192 7.316544 AGGAATACGGTTTACAAATCACATC 57.683 36.000 0.00 0.00 0.00 3.06
1899 3193 8.836413 CATAGGAATACGGTTTACAAATCACAT 58.164 33.333 0.00 0.00 0.00 3.21
1900 3194 7.201661 GCATAGGAATACGGTTTACAAATCACA 60.202 37.037 0.00 0.00 0.00 3.58
1901 3195 7.130269 GCATAGGAATACGGTTTACAAATCAC 58.870 38.462 0.00 0.00 0.00 3.06
1902 3196 6.018588 CGCATAGGAATACGGTTTACAAATCA 60.019 38.462 0.00 0.00 0.00 2.57
1903 3197 6.360329 CGCATAGGAATACGGTTTACAAATC 58.640 40.000 0.00 0.00 0.00 2.17
1904 3198 5.237779 CCGCATAGGAATACGGTTTACAAAT 59.762 40.000 0.00 0.00 45.00 2.32
1905 3199 4.571580 CCGCATAGGAATACGGTTTACAAA 59.428 41.667 0.00 0.00 45.00 2.83
1906 3200 4.121317 CCGCATAGGAATACGGTTTACAA 58.879 43.478 0.00 0.00 45.00 2.41
1907 3201 3.493002 CCCGCATAGGAATACGGTTTACA 60.493 47.826 0.00 0.00 39.96 2.41
1908 3202 3.062042 CCCGCATAGGAATACGGTTTAC 58.938 50.000 0.00 0.00 39.96 2.01
1909 3203 2.037511 CCCCGCATAGGAATACGGTTTA 59.962 50.000 0.00 0.00 39.96 2.01
1910 3204 1.202722 CCCCGCATAGGAATACGGTTT 60.203 52.381 0.00 0.00 39.96 3.27
1911 3205 0.395312 CCCCGCATAGGAATACGGTT 59.605 55.000 0.00 0.00 39.96 4.44
1912 3206 0.761702 ACCCCGCATAGGAATACGGT 60.762 55.000 0.00 0.00 39.96 4.83
1913 3207 0.320421 CACCCCGCATAGGAATACGG 60.320 60.000 0.00 0.00 45.00 4.02
1914 3208 0.949105 GCACCCCGCATAGGAATACG 60.949 60.000 0.00 0.00 45.00 3.06
1915 3209 0.396811 AGCACCCCGCATAGGAATAC 59.603 55.000 0.00 0.00 46.13 1.89
1916 3210 2.018355 TAGCACCCCGCATAGGAATA 57.982 50.000 0.00 0.00 46.13 1.75
1917 3211 1.136828 TTAGCACCCCGCATAGGAAT 58.863 50.000 0.00 0.00 46.13 3.01
1918 3212 1.136828 ATTAGCACCCCGCATAGGAA 58.863 50.000 0.00 0.00 46.13 3.36
1919 3213 1.071699 GAATTAGCACCCCGCATAGGA 59.928 52.381 0.00 0.00 46.13 2.94
1920 3214 1.072331 AGAATTAGCACCCCGCATAGG 59.928 52.381 0.00 0.00 46.13 2.57
1921 3215 2.550830 AGAATTAGCACCCCGCATAG 57.449 50.000 0.00 0.00 46.13 2.23
1922 3216 3.290948 AAAGAATTAGCACCCCGCATA 57.709 42.857 0.00 0.00 46.13 3.14
1923 3217 2.143876 AAAGAATTAGCACCCCGCAT 57.856 45.000 0.00 0.00 46.13 4.73
1924 3218 2.791347 TAAAGAATTAGCACCCCGCA 57.209 45.000 0.00 0.00 46.13 5.69
1925 3219 3.630312 TCAATAAAGAATTAGCACCCCGC 59.370 43.478 0.00 0.00 42.91 6.13
1926 3220 5.828299 TTCAATAAAGAATTAGCACCCCG 57.172 39.130 0.00 0.00 0.00 5.73
1952 3246 9.243105 ACTGCAATCTGGTTTACTGTAATATTT 57.757 29.630 0.37 0.00 0.00 1.40
1953 3247 8.807948 ACTGCAATCTGGTTTACTGTAATATT 57.192 30.769 0.37 0.00 0.00 1.28
1954 3248 9.899661 TTACTGCAATCTGGTTTACTGTAATAT 57.100 29.630 0.37 0.00 0.00 1.28
1955 3249 9.727859 TTTACTGCAATCTGGTTTACTGTAATA 57.272 29.630 0.37 0.00 0.00 0.98
1956 3250 8.630054 TTTACTGCAATCTGGTTTACTGTAAT 57.370 30.769 0.37 0.00 0.00 1.89
1957 3251 8.630054 ATTTACTGCAATCTGGTTTACTGTAA 57.370 30.769 0.00 0.00 0.00 2.41
1958 3252 7.880713 TGATTTACTGCAATCTGGTTTACTGTA 59.119 33.333 0.00 0.00 34.66 2.74
1959 3253 6.714810 TGATTTACTGCAATCTGGTTTACTGT 59.285 34.615 0.00 0.00 34.66 3.55
1960 3254 7.144722 TGATTTACTGCAATCTGGTTTACTG 57.855 36.000 0.00 0.00 34.66 2.74
1961 3255 6.127897 GCTGATTTACTGCAATCTGGTTTACT 60.128 38.462 5.48 0.00 41.89 2.24
1962 3256 6.030228 GCTGATTTACTGCAATCTGGTTTAC 58.970 40.000 5.48 0.00 41.89 2.01
1963 3257 5.163764 CGCTGATTTACTGCAATCTGGTTTA 60.164 40.000 5.48 0.00 42.30 2.01
1964 3258 4.379813 CGCTGATTTACTGCAATCTGGTTT 60.380 41.667 5.48 0.00 42.30 3.27
1965 3259 3.127548 CGCTGATTTACTGCAATCTGGTT 59.872 43.478 5.48 0.00 42.30 3.67
1966 3260 2.679837 CGCTGATTTACTGCAATCTGGT 59.320 45.455 5.48 0.00 42.30 4.00
1967 3261 2.032550 CCGCTGATTTACTGCAATCTGG 59.967 50.000 5.48 0.00 42.30 3.86
1968 3262 2.540361 GCCGCTGATTTACTGCAATCTG 60.540 50.000 0.00 0.00 42.30 2.90
1969 3263 1.672881 GCCGCTGATTTACTGCAATCT 59.327 47.619 0.00 0.00 42.30 2.40
1970 3264 1.672881 AGCCGCTGATTTACTGCAATC 59.327 47.619 0.00 0.00 42.30 2.67
1971 3265 1.755179 AGCCGCTGATTTACTGCAAT 58.245 45.000 0.00 0.00 42.30 3.56
1972 3266 2.279741 CTAGCCGCTGATTTACTGCAA 58.720 47.619 2.16 0.00 42.30 4.08
1973 3267 1.207089 ACTAGCCGCTGATTTACTGCA 59.793 47.619 2.16 0.00 42.30 4.41
1974 3268 1.861575 GACTAGCCGCTGATTTACTGC 59.138 52.381 2.16 0.00 39.52 4.40
1975 3269 2.120232 CGACTAGCCGCTGATTTACTG 58.880 52.381 2.16 0.00 0.00 2.74
1976 3270 2.493713 CGACTAGCCGCTGATTTACT 57.506 50.000 2.16 0.00 0.00 2.24
1989 3283 1.399572 CAATCGATCACGGCGACTAG 58.600 55.000 16.62 0.00 40.94 2.57
1990 3284 0.594028 GCAATCGATCACGGCGACTA 60.594 55.000 16.62 0.00 40.94 2.59
1991 3285 1.878522 GCAATCGATCACGGCGACT 60.879 57.895 16.62 0.00 40.94 4.18
1992 3286 2.082437 CTGCAATCGATCACGGCGAC 62.082 60.000 16.62 0.69 40.94 5.19
1993 3287 1.878069 CTGCAATCGATCACGGCGA 60.878 57.895 16.62 0.00 42.48 5.54
1994 3288 2.622629 CTGCAATCGATCACGGCG 59.377 61.111 4.80 4.80 40.21 6.46
1995 3289 1.709147 AAGCTGCAATCGATCACGGC 61.709 55.000 18.89 18.89 40.21 5.68
1996 3290 0.302890 GAAGCTGCAATCGATCACGG 59.697 55.000 0.00 0.00 40.21 4.94
1997 3291 1.005242 CAGAAGCTGCAATCGATCACG 60.005 52.381 0.00 0.00 41.26 4.35
1998 3292 1.329906 CCAGAAGCTGCAATCGATCAC 59.670 52.381 0.00 0.00 0.00 3.06
1999 3293 1.207811 TCCAGAAGCTGCAATCGATCA 59.792 47.619 0.00 0.00 0.00 2.92
2000 3294 1.945387 TCCAGAAGCTGCAATCGATC 58.055 50.000 0.00 0.00 0.00 3.69
2001 3295 2.492012 GATCCAGAAGCTGCAATCGAT 58.508 47.619 1.02 0.00 0.00 3.59
2002 3296 1.803998 CGATCCAGAAGCTGCAATCGA 60.804 52.381 15.40 0.00 42.54 3.59
2003 3297 0.580578 CGATCCAGAAGCTGCAATCG 59.419 55.000 1.02 9.03 38.34 3.34
2004 3298 1.661341 ACGATCCAGAAGCTGCAATC 58.339 50.000 1.02 0.00 0.00 2.67
2005 3299 2.988010 TACGATCCAGAAGCTGCAAT 57.012 45.000 1.02 0.00 0.00 3.56
2006 3300 2.742053 GTTTACGATCCAGAAGCTGCAA 59.258 45.455 1.02 0.00 0.00 4.08
2007 3301 2.346803 GTTTACGATCCAGAAGCTGCA 58.653 47.619 1.02 0.00 0.00 4.41
2008 3302 1.666189 GGTTTACGATCCAGAAGCTGC 59.334 52.381 0.00 0.00 0.00 5.25
2009 3303 2.972625 TGGTTTACGATCCAGAAGCTG 58.027 47.619 0.00 0.00 0.00 4.24
2016 3310 4.771114 ATCCAATCTGGTTTACGATCCA 57.229 40.909 0.00 0.00 39.03 3.41
2017 3311 6.451064 AAAATCCAATCTGGTTTACGATCC 57.549 37.500 0.00 0.00 39.03 3.36
2018 3312 8.209917 ACTAAAATCCAATCTGGTTTACGATC 57.790 34.615 0.00 0.00 39.03 3.69
2019 3313 9.675464 TTACTAAAATCCAATCTGGTTTACGAT 57.325 29.630 0.00 0.00 39.03 3.73
2020 3314 9.504708 TTTACTAAAATCCAATCTGGTTTACGA 57.495 29.630 0.00 0.00 39.03 3.43
2065 3363 2.924926 CAACACCATCATCCGCAATTTG 59.075 45.455 0.00 0.00 0.00 2.32
2073 3371 2.225019 GCATCGATCAACACCATCATCC 59.775 50.000 0.00 0.00 0.00 3.51
2177 3476 9.832445 AAGTTGACTTCTACTGTAATCTTTTGA 57.168 29.630 0.00 0.00 32.55 2.69
2254 4195 9.778741 TTAGAAACTGTGAAGATGTAAACTGAT 57.221 29.630 0.00 0.00 0.00 2.90
2294 4235 2.695147 CCCACTTCAACCAGAAAGCTTT 59.305 45.455 12.53 12.53 35.40 3.51
2295 4236 2.310538 CCCACTTCAACCAGAAAGCTT 58.689 47.619 0.00 0.00 35.40 3.74
2300 4241 1.780309 ACATCCCCACTTCAACCAGAA 59.220 47.619 0.00 0.00 34.41 3.02
2311 4252 2.677228 CTGGTCCCACATCCCCAC 59.323 66.667 0.00 0.00 0.00 4.61
2347 4288 3.306613 GGCCTAGGTGGTAAGTACATCT 58.693 50.000 11.31 0.00 38.35 2.90
2393 4334 3.582647 AGTGTCTCCATGGATGTACACAA 59.417 43.478 34.01 13.43 39.66 3.33
2442 4408 7.065085 GCCTAGCACATGATATTTGGTATGTAG 59.935 40.741 0.00 0.00 32.86 2.74
2449 4415 3.489355 TGGCCTAGCACATGATATTTGG 58.511 45.455 3.32 0.00 0.00 3.28
2451 4417 4.937620 CGTATGGCCTAGCACATGATATTT 59.062 41.667 3.32 0.00 0.00 1.40
2549 4520 9.438228 TTTTTACGAGTTGTCATTGGATGTATA 57.562 29.630 0.00 0.00 0.00 1.47
2577 4550 6.517529 GCTTACATTCTGTCACTAGGATAGGG 60.518 46.154 0.00 0.00 45.75 3.53
2579 4552 6.451393 GGCTTACATTCTGTCACTAGGATAG 58.549 44.000 0.00 0.00 46.50 2.08
2587 4563 1.369625 CCGGGCTTACATTCTGTCAC 58.630 55.000 0.00 0.00 0.00 3.67
2598 4574 1.223487 GCTCACAATCCCGGGCTTA 59.777 57.895 18.49 0.00 0.00 3.09
2607 4584 1.731160 GCTGACACTGAGCTCACAATC 59.269 52.381 13.74 10.60 33.37 2.67
2696 4674 7.553334 AGAGTTGAATAACAGGCGTTCTATTA 58.447 34.615 0.00 0.00 39.30 0.98
2737 4718 9.950680 AAGCTAATATGTTTTATTTGGATCGTG 57.049 29.630 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.