Multiple sequence alignment - TraesCS4A01G220000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G220000 chr4A 100.000 4777 0 0 1 4777 522292017 522296793 0.000000e+00 8822.0
1 TraesCS4A01G220000 chr4D 96.126 3846 109 19 946 4776 70117933 70121753 0.000000e+00 6240.0
2 TraesCS4A01G220000 chr4D 93.780 418 16 4 420 827 70117413 70117830 1.890000e-173 619.0
3 TraesCS4A01G220000 chr4B 95.404 3742 103 21 526 4214 103771331 103775056 0.000000e+00 5893.0
4 TraesCS4A01G220000 chr4B 89.474 152 14 2 4626 4777 103775260 103775409 1.750000e-44 191.0
5 TraesCS4A01G220000 chr4B 93.617 47 3 0 4593 4639 103775061 103775107 2.390000e-08 71.3
6 TraesCS4A01G220000 chr5D 79.459 925 171 14 2082 2995 197152615 197151699 5.210000e-179 638.0
7 TraesCS4A01G220000 chr5B 79.266 926 171 16 2079 2992 213250215 213251131 1.130000e-175 627.0
8 TraesCS4A01G220000 chr5B 88.556 367 37 5 4221 4587 665542218 665541857 1.580000e-119 440.0
9 TraesCS4A01G220000 chr5A 78.919 925 176 16 2079 2992 227923540 227924456 1.140000e-170 610.0
10 TraesCS4A01G220000 chr7D 90.756 357 30 3 4229 4585 579247868 579248221 1.560000e-129 473.0
11 TraesCS4A01G220000 chr7D 82.792 523 81 8 2293 2812 492221175 492220659 4.360000e-125 459.0
12 TraesCS4A01G220000 chr7D 88.828 367 38 3 4219 4585 477837312 477836949 9.430000e-122 448.0
13 TraesCS4A01G220000 chr7D 83.246 191 30 2 3272 3461 492219999 492219810 1.770000e-39 174.0
14 TraesCS4A01G220000 chr7A 83.174 523 79 8 2293 2812 558756224 558755708 2.010000e-128 470.0
15 TraesCS4A01G220000 chr7A 82.199 191 32 2 3272 3461 558755082 558754893 3.830000e-36 163.0
16 TraesCS4A01G220000 chr6D 89.674 368 35 3 4220 4587 420896061 420896425 2.600000e-127 466.0
17 TraesCS4A01G220000 chr6D 88.043 368 39 5 4219 4585 123967180 123967543 9.500000e-117 431.0
18 TraesCS4A01G220000 chr6D 75.566 221 49 4 2488 2706 335375780 335375563 2.350000e-18 104.0
19 TraesCS4A01G220000 chr3D 89.130 368 37 3 4220 4587 590219344 590219708 5.640000e-124 455.0
20 TraesCS4A01G220000 chr3D 88.525 366 37 5 4221 4585 600110279 600110640 5.680000e-119 438.0
21 TraesCS4A01G220000 chr7B 83.644 483 70 8 2333 2812 521617088 521616612 3.390000e-121 446.0
22 TraesCS4A01G220000 chr7B 81.915 188 32 2 3275 3461 521615960 521615774 1.780000e-34 158.0
23 TraesCS4A01G220000 chr2D 88.283 367 39 4 4220 4585 630766301 630766664 2.040000e-118 436.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G220000 chr4A 522292017 522296793 4776 False 8822.000000 8822 100.000000 1 4777 1 chr4A.!!$F1 4776
1 TraesCS4A01G220000 chr4D 70117413 70121753 4340 False 3429.500000 6240 94.953000 420 4776 2 chr4D.!!$F1 4356
2 TraesCS4A01G220000 chr4B 103771331 103775409 4078 False 2051.766667 5893 92.831667 526 4777 3 chr4B.!!$F1 4251
3 TraesCS4A01G220000 chr5D 197151699 197152615 916 True 638.000000 638 79.459000 2082 2995 1 chr5D.!!$R1 913
4 TraesCS4A01G220000 chr5B 213250215 213251131 916 False 627.000000 627 79.266000 2079 2992 1 chr5B.!!$F1 913
5 TraesCS4A01G220000 chr5A 227923540 227924456 916 False 610.000000 610 78.919000 2079 2992 1 chr5A.!!$F1 913
6 TraesCS4A01G220000 chr7D 492219810 492221175 1365 True 316.500000 459 83.019000 2293 3461 2 chr7D.!!$R2 1168
7 TraesCS4A01G220000 chr7A 558754893 558756224 1331 True 316.500000 470 82.686500 2293 3461 2 chr7A.!!$R1 1168
8 TraesCS4A01G220000 chr7B 521615774 521617088 1314 True 302.000000 446 82.779500 2333 3461 2 chr7B.!!$R1 1128

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
340 341 0.034089 CGCTTTTGGGAGGAGGGAAT 60.034 55.0 0.00 0.00 33.84 3.01 F
377 378 0.110486 ACGGCCTTTGTGTTGGAGAT 59.890 50.0 0.00 0.00 0.00 2.75 F
1891 1938 0.174617 GCTTCTTCCGGAGACTCTGG 59.825 60.0 22.71 22.71 44.41 3.86 F
3495 3764 0.462581 TACTACGCCGTCGGACTGAT 60.463 55.0 17.49 0.00 40.69 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2013 2063 0.593128 TGCTTGCCGCTTTCTTCTTC 59.407 50.0 0.00 0.0 40.11 2.87 R
2015 2065 0.595095 CTTGCTTGCCGCTTTCTTCT 59.405 50.0 0.00 0.0 40.11 2.85 R
3502 3771 0.107703 GTCCAATGGCGATCAGTCCA 60.108 55.0 0.00 0.0 36.70 4.02 R
4312 4596 0.249120 AAGATGGATGTTGCGACCGA 59.751 50.0 0.45 0.0 0.00 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.207354 GCGAAGAGACCGGATCCA 58.793 61.111 9.46 0.00 0.00 3.41
18 19 1.227002 GCGAAGAGACCGGATCCAC 60.227 63.158 9.46 2.42 0.00 4.02
19 20 1.064296 CGAAGAGACCGGATCCACG 59.936 63.158 9.46 10.51 0.00 4.94
27 28 3.884900 CGGATCCACGGACAAACC 58.115 61.111 13.41 0.00 0.00 3.27
28 29 1.743995 CGGATCCACGGACAAACCC 60.744 63.158 13.41 0.00 34.64 4.11
29 30 1.378119 GGATCCACGGACAAACCCC 60.378 63.158 6.95 0.00 34.64 4.95
30 31 1.378119 GATCCACGGACAAACCCCC 60.378 63.158 0.00 0.00 34.64 5.40
35 36 3.943691 CGGACAAACCCCCGGACA 61.944 66.667 0.73 0.00 41.89 4.02
36 37 2.516909 GGACAAACCCCCGGACAA 59.483 61.111 0.73 0.00 0.00 3.18
37 38 1.152715 GGACAAACCCCCGGACAAA 60.153 57.895 0.73 0.00 0.00 2.83
38 39 1.457823 GGACAAACCCCCGGACAAAC 61.458 60.000 0.73 0.00 0.00 2.93
39 40 1.788067 GACAAACCCCCGGACAAACG 61.788 60.000 0.73 0.00 0.00 3.60
40 41 2.908428 AAACCCCCGGACAAACGC 60.908 61.111 0.73 0.00 0.00 4.84
41 42 3.717924 AAACCCCCGGACAAACGCA 62.718 57.895 0.73 0.00 0.00 5.24
42 43 4.636435 ACCCCCGGACAAACGCAG 62.636 66.667 0.73 0.00 0.00 5.18
43 44 4.323477 CCCCCGGACAAACGCAGA 62.323 66.667 0.73 0.00 0.00 4.26
44 45 2.046314 CCCCGGACAAACGCAGAT 60.046 61.111 0.73 0.00 0.00 2.90
45 46 2.106683 CCCCGGACAAACGCAGATC 61.107 63.158 0.73 0.00 0.00 2.75
46 47 1.079127 CCCGGACAAACGCAGATCT 60.079 57.895 0.73 0.00 0.00 2.75
47 48 1.361668 CCCGGACAAACGCAGATCTG 61.362 60.000 18.84 18.84 0.00 2.90
48 49 1.361668 CCGGACAAACGCAGATCTGG 61.362 60.000 23.89 15.76 0.00 3.86
49 50 0.389817 CGGACAAACGCAGATCTGGA 60.390 55.000 23.89 0.00 0.00 3.86
50 51 1.808411 GGACAAACGCAGATCTGGAA 58.192 50.000 23.89 0.00 0.00 3.53
51 52 2.359900 GGACAAACGCAGATCTGGAAT 58.640 47.619 23.89 6.64 0.00 3.01
52 53 2.096496 GGACAAACGCAGATCTGGAATG 59.904 50.000 23.89 17.38 0.00 2.67
53 54 2.086869 ACAAACGCAGATCTGGAATGG 58.913 47.619 23.89 8.96 0.00 3.16
54 55 2.290260 ACAAACGCAGATCTGGAATGGA 60.290 45.455 23.89 0.00 0.00 3.41
55 56 2.322355 AACGCAGATCTGGAATGGAG 57.678 50.000 23.89 1.30 0.00 3.86
56 57 0.467384 ACGCAGATCTGGAATGGAGG 59.533 55.000 23.89 0.00 0.00 4.30
57 58 0.883814 CGCAGATCTGGAATGGAGGC 60.884 60.000 23.89 5.38 0.00 4.70
58 59 0.883814 GCAGATCTGGAATGGAGGCG 60.884 60.000 23.89 0.00 0.00 5.52
59 60 0.250209 CAGATCTGGAATGGAGGCGG 60.250 60.000 15.38 0.00 0.00 6.13
60 61 1.072159 GATCTGGAATGGAGGCGGG 59.928 63.158 0.00 0.00 0.00 6.13
61 62 3.125376 ATCTGGAATGGAGGCGGGC 62.125 63.158 0.00 0.00 0.00 6.13
62 63 3.801997 CTGGAATGGAGGCGGGCT 61.802 66.667 2.69 2.69 0.00 5.19
63 64 4.113815 TGGAATGGAGGCGGGCTG 62.114 66.667 9.52 0.00 0.00 4.85
64 65 4.883354 GGAATGGAGGCGGGCTGG 62.883 72.222 9.52 0.00 0.00 4.85
76 77 4.883354 GGCTGGCCCCATCCTTCG 62.883 72.222 0.00 0.00 30.22 3.79
78 79 3.801997 CTGGCCCCATCCTTCGCT 61.802 66.667 0.00 0.00 0.00 4.93
79 80 4.113815 TGGCCCCATCCTTCGCTG 62.114 66.667 0.00 0.00 0.00 5.18
82 83 4.113815 CCCCATCCTTCGCTGCCA 62.114 66.667 0.00 0.00 0.00 4.92
83 84 2.825836 CCCATCCTTCGCTGCCAC 60.826 66.667 0.00 0.00 0.00 5.01
84 85 3.197790 CCATCCTTCGCTGCCACG 61.198 66.667 0.00 0.00 0.00 4.94
85 86 3.869272 CATCCTTCGCTGCCACGC 61.869 66.667 0.00 0.00 0.00 5.34
94 95 4.827087 CTGCCACGCGAGCTGGAT 62.827 66.667 15.93 0.00 35.26 3.41
95 96 4.819761 TGCCACGCGAGCTGGATC 62.820 66.667 15.93 0.00 35.26 3.36
96 97 4.521062 GCCACGCGAGCTGGATCT 62.521 66.667 15.93 0.00 35.26 2.75
97 98 2.584418 CCACGCGAGCTGGATCTG 60.584 66.667 15.93 0.00 35.26 2.90
98 99 2.584418 CACGCGAGCTGGATCTGG 60.584 66.667 15.93 0.00 0.00 3.86
99 100 4.521062 ACGCGAGCTGGATCTGGC 62.521 66.667 15.93 0.00 34.95 4.85
100 101 4.519437 CGCGAGCTGGATCTGGCA 62.519 66.667 0.00 0.00 37.62 4.92
101 102 2.588314 GCGAGCTGGATCTGGCAG 60.588 66.667 8.58 8.58 37.67 4.85
102 103 3.086391 GCGAGCTGGATCTGGCAGA 62.086 63.158 21.19 21.19 37.67 4.26
103 104 1.067749 CGAGCTGGATCTGGCAGAG 59.932 63.158 23.24 10.15 0.00 3.35
104 105 1.227615 GAGCTGGATCTGGCAGAGC 60.228 63.158 23.95 23.95 0.00 4.09
131 132 4.170723 GCACTGAGCGACCACTAC 57.829 61.111 0.00 0.00 0.00 2.73
132 133 1.289066 GCACTGAGCGACCACTACA 59.711 57.895 0.00 0.00 0.00 2.74
133 134 0.734253 GCACTGAGCGACCACTACAG 60.734 60.000 0.00 0.00 35.14 2.74
134 135 0.734253 CACTGAGCGACCACTACAGC 60.734 60.000 0.00 0.00 32.67 4.40
135 136 1.153745 CTGAGCGACCACTACAGCC 60.154 63.158 0.00 0.00 0.00 4.85
136 137 2.202623 GAGCGACCACTACAGCCG 60.203 66.667 0.00 0.00 0.00 5.52
137 138 2.675423 AGCGACCACTACAGCCGA 60.675 61.111 0.00 0.00 0.00 5.54
138 139 2.209064 GAGCGACCACTACAGCCGAA 62.209 60.000 0.00 0.00 0.00 4.30
139 140 1.805945 GCGACCACTACAGCCGAAG 60.806 63.158 0.00 0.00 0.00 3.79
140 141 1.585006 CGACCACTACAGCCGAAGT 59.415 57.895 0.00 0.00 0.00 3.01
141 142 0.732880 CGACCACTACAGCCGAAGTG 60.733 60.000 3.55 3.55 42.25 3.16
160 161 4.530857 CCGGCGGTGCTAGGAAGG 62.531 72.222 19.97 0.00 0.00 3.46
161 162 4.530857 CGGCGGTGCTAGGAAGGG 62.531 72.222 0.00 0.00 0.00 3.95
162 163 4.176752 GGCGGTGCTAGGAAGGGG 62.177 72.222 0.00 0.00 0.00 4.79
163 164 3.400054 GCGGTGCTAGGAAGGGGT 61.400 66.667 0.00 0.00 0.00 4.95
164 165 2.584608 CGGTGCTAGGAAGGGGTG 59.415 66.667 0.00 0.00 0.00 4.61
165 166 2.998949 GGTGCTAGGAAGGGGTGG 59.001 66.667 0.00 0.00 0.00 4.61
166 167 2.680370 GGTGCTAGGAAGGGGTGGG 61.680 68.421 0.00 0.00 0.00 4.61
167 168 1.615424 GTGCTAGGAAGGGGTGGGA 60.615 63.158 0.00 0.00 0.00 4.37
168 169 1.162329 TGCTAGGAAGGGGTGGGAA 59.838 57.895 0.00 0.00 0.00 3.97
169 170 1.205460 TGCTAGGAAGGGGTGGGAAC 61.205 60.000 0.00 0.00 0.00 3.62
170 171 1.205460 GCTAGGAAGGGGTGGGAACA 61.205 60.000 0.00 0.00 38.70 3.18
171 172 1.368374 CTAGGAAGGGGTGGGAACAA 58.632 55.000 0.00 0.00 46.06 2.83
172 173 1.282157 CTAGGAAGGGGTGGGAACAAG 59.718 57.143 0.00 0.00 46.06 3.16
173 174 1.076727 GGAAGGGGTGGGAACAAGG 59.923 63.158 0.00 0.00 46.06 3.61
174 175 1.432023 GGAAGGGGTGGGAACAAGGA 61.432 60.000 0.00 0.00 46.06 3.36
175 176 0.038310 GAAGGGGTGGGAACAAGGAG 59.962 60.000 0.00 0.00 46.06 3.69
176 177 2.035783 GGGGTGGGAACAAGGAGC 59.964 66.667 0.00 0.00 46.06 4.70
177 178 2.840753 GGGGTGGGAACAAGGAGCA 61.841 63.158 0.00 0.00 46.06 4.26
178 179 1.303643 GGGTGGGAACAAGGAGCAG 60.304 63.158 0.00 0.00 46.06 4.24
179 180 1.973812 GGTGGGAACAAGGAGCAGC 60.974 63.158 0.00 0.00 46.06 5.25
180 181 1.073897 GTGGGAACAAGGAGCAGCT 59.926 57.895 0.00 0.00 46.06 4.24
181 182 0.957888 GTGGGAACAAGGAGCAGCTC 60.958 60.000 14.69 14.69 46.06 4.09
182 183 1.130054 TGGGAACAAGGAGCAGCTCT 61.130 55.000 21.99 5.50 37.44 4.09
183 184 0.392327 GGGAACAAGGAGCAGCTCTC 60.392 60.000 21.99 10.89 41.15 3.20
184 185 0.322975 GGAACAAGGAGCAGCTCTCA 59.677 55.000 21.99 0.00 43.70 3.27
185 186 1.437625 GAACAAGGAGCAGCTCTCAC 58.562 55.000 21.99 5.71 43.70 3.51
186 187 1.001860 GAACAAGGAGCAGCTCTCACT 59.998 52.381 21.99 8.08 43.70 3.41
187 188 0.607620 ACAAGGAGCAGCTCTCACTC 59.392 55.000 21.99 4.95 43.70 3.51
188 189 0.607112 CAAGGAGCAGCTCTCACTCA 59.393 55.000 21.99 0.00 43.70 3.41
189 190 0.607620 AAGGAGCAGCTCTCACTCAC 59.392 55.000 21.99 3.45 43.70 3.51
190 191 1.217779 GGAGCAGCTCTCACTCACC 59.782 63.158 21.99 0.00 43.70 4.02
191 192 1.257055 GGAGCAGCTCTCACTCACCT 61.257 60.000 21.99 0.00 43.70 4.00
192 193 1.468985 GAGCAGCTCTCACTCACCTA 58.531 55.000 15.78 0.00 41.51 3.08
193 194 1.405105 GAGCAGCTCTCACTCACCTAG 59.595 57.143 15.78 0.00 41.51 3.02
194 195 1.005332 AGCAGCTCTCACTCACCTAGA 59.995 52.381 0.00 0.00 0.00 2.43
195 196 1.134175 GCAGCTCTCACTCACCTAGAC 59.866 57.143 0.00 0.00 0.00 2.59
196 197 1.748493 CAGCTCTCACTCACCTAGACC 59.252 57.143 0.00 0.00 0.00 3.85
197 198 1.107945 GCTCTCACTCACCTAGACCC 58.892 60.000 0.00 0.00 0.00 4.46
198 199 1.770294 CTCTCACTCACCTAGACCCC 58.230 60.000 0.00 0.00 0.00 4.95
199 200 1.006043 CTCTCACTCACCTAGACCCCA 59.994 57.143 0.00 0.00 0.00 4.96
200 201 1.431633 TCTCACTCACCTAGACCCCAA 59.568 52.381 0.00 0.00 0.00 4.12
201 202 2.158219 TCTCACTCACCTAGACCCCAAA 60.158 50.000 0.00 0.00 0.00 3.28
202 203 2.637872 CTCACTCACCTAGACCCCAAAA 59.362 50.000 0.00 0.00 0.00 2.44
203 204 2.370849 TCACTCACCTAGACCCCAAAAC 59.629 50.000 0.00 0.00 0.00 2.43
204 205 1.703513 ACTCACCTAGACCCCAAAACC 59.296 52.381 0.00 0.00 0.00 3.27
205 206 0.688487 TCACCTAGACCCCAAAACCG 59.312 55.000 0.00 0.00 0.00 4.44
206 207 0.322187 CACCTAGACCCCAAAACCGG 60.322 60.000 0.00 0.00 0.00 5.28
207 208 1.301954 CCTAGACCCCAAAACCGGG 59.698 63.158 6.32 0.00 46.94 5.73
224 225 3.760035 GGCAACCGAGCGAGGAGA 61.760 66.667 7.50 0.00 34.64 3.71
225 226 2.261671 GCAACCGAGCGAGGAGAA 59.738 61.111 7.50 0.00 34.73 2.87
226 227 1.807573 GCAACCGAGCGAGGAGAAG 60.808 63.158 7.50 0.00 34.73 2.85
227 228 1.587054 CAACCGAGCGAGGAGAAGT 59.413 57.895 7.50 0.00 34.73 3.01
228 229 0.809385 CAACCGAGCGAGGAGAAGTA 59.191 55.000 7.50 0.00 34.73 2.24
229 230 1.201647 CAACCGAGCGAGGAGAAGTAA 59.798 52.381 7.50 0.00 34.73 2.24
230 231 0.810016 ACCGAGCGAGGAGAAGTAAC 59.190 55.000 7.50 0.00 34.73 2.50
231 232 0.809385 CCGAGCGAGGAGAAGTAACA 59.191 55.000 0.00 0.00 0.00 2.41
232 233 1.405821 CCGAGCGAGGAGAAGTAACAT 59.594 52.381 0.00 0.00 0.00 2.71
233 234 2.617308 CCGAGCGAGGAGAAGTAACATA 59.383 50.000 0.00 0.00 0.00 2.29
234 235 3.548415 CCGAGCGAGGAGAAGTAACATAC 60.548 52.174 0.00 0.00 0.00 2.39
235 236 3.064958 CGAGCGAGGAGAAGTAACATACA 59.935 47.826 0.00 0.00 0.00 2.29
236 237 4.438336 CGAGCGAGGAGAAGTAACATACAA 60.438 45.833 0.00 0.00 0.00 2.41
237 238 4.745649 AGCGAGGAGAAGTAACATACAAC 58.254 43.478 0.00 0.00 0.00 3.32
238 239 4.463186 AGCGAGGAGAAGTAACATACAACT 59.537 41.667 0.00 0.00 0.00 3.16
239 240 4.799428 GCGAGGAGAAGTAACATACAACTC 59.201 45.833 0.00 0.00 34.67 3.01
240 241 5.621555 GCGAGGAGAAGTAACATACAACTCA 60.622 44.000 0.00 0.00 36.00 3.41
241 242 6.565234 CGAGGAGAAGTAACATACAACTCAT 58.435 40.000 0.00 0.00 36.00 2.90
242 243 6.473778 CGAGGAGAAGTAACATACAACTCATG 59.526 42.308 0.00 0.00 36.00 3.07
243 244 7.246171 AGGAGAAGTAACATACAACTCATGT 57.754 36.000 0.00 0.00 46.36 3.21
257 258 7.141758 ACAACTCATGTATCATTATCACCCT 57.858 36.000 0.00 0.00 41.63 4.34
258 259 7.220030 ACAACTCATGTATCATTATCACCCTC 58.780 38.462 0.00 0.00 41.63 4.30
259 260 6.365970 ACTCATGTATCATTATCACCCTCC 57.634 41.667 0.00 0.00 0.00 4.30
260 261 5.047021 ACTCATGTATCATTATCACCCTCCG 60.047 44.000 0.00 0.00 0.00 4.63
261 262 4.222810 TCATGTATCATTATCACCCTCCGG 59.777 45.833 0.00 0.00 0.00 5.14
262 263 2.301870 TGTATCATTATCACCCTCCGGC 59.698 50.000 0.00 0.00 0.00 6.13
263 264 1.434188 ATCATTATCACCCTCCGGCA 58.566 50.000 0.00 0.00 0.00 5.69
264 265 0.468226 TCATTATCACCCTCCGGCAC 59.532 55.000 0.00 0.00 0.00 5.01
265 266 0.469917 CATTATCACCCTCCGGCACT 59.530 55.000 0.00 0.00 0.00 4.40
266 267 1.691976 CATTATCACCCTCCGGCACTA 59.308 52.381 0.00 0.00 0.00 2.74
267 268 1.117150 TTATCACCCTCCGGCACTAC 58.883 55.000 0.00 0.00 0.00 2.73
268 269 0.757935 TATCACCCTCCGGCACTACC 60.758 60.000 0.00 0.00 0.00 3.18
269 270 3.782443 CACCCTCCGGCACTACCC 61.782 72.222 0.00 0.00 33.26 3.69
270 271 4.007323 ACCCTCCGGCACTACCCT 62.007 66.667 0.00 0.00 33.26 4.34
271 272 2.281091 CCCTCCGGCACTACCCTA 59.719 66.667 0.00 0.00 33.26 3.53
272 273 1.833049 CCCTCCGGCACTACCCTAG 60.833 68.421 0.00 0.00 33.26 3.02
273 274 1.076192 CCTCCGGCACTACCCTAGT 60.076 63.158 0.00 0.00 40.28 2.57
274 275 1.108132 CCTCCGGCACTACCCTAGTC 61.108 65.000 0.00 0.00 36.76 2.59
275 276 0.106619 CTCCGGCACTACCCTAGTCT 60.107 60.000 0.00 0.00 36.76 3.24
276 277 0.395311 TCCGGCACTACCCTAGTCTG 60.395 60.000 0.00 0.00 36.76 3.51
277 278 0.683504 CCGGCACTACCCTAGTCTGT 60.684 60.000 0.00 0.00 36.76 3.41
278 279 0.456221 CGGCACTACCCTAGTCTGTG 59.544 60.000 0.00 0.00 36.76 3.66
279 280 1.848652 GGCACTACCCTAGTCTGTGA 58.151 55.000 0.00 0.00 36.76 3.58
280 281 2.176889 GGCACTACCCTAGTCTGTGAA 58.823 52.381 0.00 0.00 36.76 3.18
281 282 2.565834 GGCACTACCCTAGTCTGTGAAA 59.434 50.000 0.00 0.00 36.76 2.69
282 283 3.007614 GGCACTACCCTAGTCTGTGAAAA 59.992 47.826 0.00 0.00 36.76 2.29
283 284 4.504340 GGCACTACCCTAGTCTGTGAAAAA 60.504 45.833 0.00 0.00 36.76 1.94
300 301 2.936928 AAAAACCTTACGGGCGGAG 58.063 52.632 0.00 0.00 39.10 4.63
301 302 0.109153 AAAAACCTTACGGGCGGAGT 59.891 50.000 0.00 0.00 39.10 3.85
302 303 0.975887 AAAACCTTACGGGCGGAGTA 59.024 50.000 0.00 0.00 39.10 2.59
303 304 0.533951 AAACCTTACGGGCGGAGTAG 59.466 55.000 0.00 0.00 39.10 2.57
304 305 1.325476 AACCTTACGGGCGGAGTAGG 61.325 60.000 0.00 4.89 39.10 3.18
305 306 1.454479 CCTTACGGGCGGAGTAGGA 60.454 63.158 0.00 0.00 0.00 2.94
306 307 0.826672 CCTTACGGGCGGAGTAGGAT 60.827 60.000 0.00 0.00 0.00 3.24
307 308 1.546323 CCTTACGGGCGGAGTAGGATA 60.546 57.143 0.00 0.00 0.00 2.59
308 309 1.538950 CTTACGGGCGGAGTAGGATAC 59.461 57.143 0.00 0.00 43.47 2.24
309 310 0.473755 TACGGGCGGAGTAGGATACA 59.526 55.000 0.00 0.00 46.26 2.29
310 311 0.396139 ACGGGCGGAGTAGGATACAA 60.396 55.000 0.00 0.00 46.26 2.41
311 312 0.966920 CGGGCGGAGTAGGATACAAT 59.033 55.000 0.00 0.00 46.26 2.71
312 313 1.336887 CGGGCGGAGTAGGATACAATG 60.337 57.143 0.00 0.00 46.26 2.82
313 314 1.002087 GGGCGGAGTAGGATACAATGG 59.998 57.143 0.00 0.00 46.26 3.16
314 315 1.002087 GGCGGAGTAGGATACAATGGG 59.998 57.143 0.00 0.00 46.26 4.00
315 316 1.002087 GCGGAGTAGGATACAATGGGG 59.998 57.143 0.00 0.00 46.26 4.96
316 317 2.326428 CGGAGTAGGATACAATGGGGT 58.674 52.381 0.00 0.00 46.26 4.95
317 318 2.037251 CGGAGTAGGATACAATGGGGTG 59.963 54.545 0.00 0.00 46.26 4.61
318 319 2.372172 GGAGTAGGATACAATGGGGTGG 59.628 54.545 0.00 0.00 46.26 4.61
319 320 3.046374 GAGTAGGATACAATGGGGTGGT 58.954 50.000 0.00 0.00 46.26 4.16
320 321 2.777692 AGTAGGATACAATGGGGTGGTG 59.222 50.000 0.00 0.00 46.26 4.17
321 322 0.258774 AGGATACAATGGGGTGGTGC 59.741 55.000 0.00 0.00 41.41 5.01
322 323 1.101049 GGATACAATGGGGTGGTGCG 61.101 60.000 0.00 0.00 0.00 5.34
323 324 1.724582 GATACAATGGGGTGGTGCGC 61.725 60.000 0.00 0.00 0.00 6.09
324 325 2.210144 ATACAATGGGGTGGTGCGCT 62.210 55.000 9.73 0.00 0.00 5.92
325 326 2.419011 TACAATGGGGTGGTGCGCTT 62.419 55.000 9.73 0.00 0.00 4.68
326 327 2.203625 AATGGGGTGGTGCGCTTT 60.204 55.556 9.73 0.00 0.00 3.51
327 328 1.836604 AATGGGGTGGTGCGCTTTT 60.837 52.632 9.73 0.00 0.00 2.27
328 329 2.098426 AATGGGGTGGTGCGCTTTTG 62.098 55.000 9.73 0.00 0.00 2.44
329 330 3.989787 GGGGTGGTGCGCTTTTGG 61.990 66.667 9.73 0.00 0.00 3.28
330 331 3.989787 GGGTGGTGCGCTTTTGGG 61.990 66.667 9.73 0.00 0.00 4.12
331 332 2.909965 GGTGGTGCGCTTTTGGGA 60.910 61.111 9.73 0.00 33.84 4.37
332 333 2.644992 GTGGTGCGCTTTTGGGAG 59.355 61.111 9.73 0.00 33.84 4.30
333 334 2.597217 TGGTGCGCTTTTGGGAGG 60.597 61.111 9.73 0.00 33.84 4.30
334 335 2.282180 GGTGCGCTTTTGGGAGGA 60.282 61.111 9.73 0.00 33.84 3.71
335 336 2.335712 GGTGCGCTTTTGGGAGGAG 61.336 63.158 9.73 0.00 33.84 3.69
336 337 2.034066 TGCGCTTTTGGGAGGAGG 59.966 61.111 9.73 0.00 33.84 4.30
337 338 2.751837 GCGCTTTTGGGAGGAGGG 60.752 66.667 0.00 0.00 33.84 4.30
338 339 3.077907 CGCTTTTGGGAGGAGGGA 58.922 61.111 0.00 0.00 33.84 4.20
339 340 1.378762 CGCTTTTGGGAGGAGGGAA 59.621 57.895 0.00 0.00 33.84 3.97
340 341 0.034089 CGCTTTTGGGAGGAGGGAAT 60.034 55.000 0.00 0.00 33.84 3.01
341 342 1.478631 GCTTTTGGGAGGAGGGAATG 58.521 55.000 0.00 0.00 0.00 2.67
342 343 1.272704 GCTTTTGGGAGGAGGGAATGT 60.273 52.381 0.00 0.00 0.00 2.71
343 344 2.823152 GCTTTTGGGAGGAGGGAATGTT 60.823 50.000 0.00 0.00 0.00 2.71
344 345 3.563479 GCTTTTGGGAGGAGGGAATGTTA 60.563 47.826 0.00 0.00 0.00 2.41
345 346 3.732048 TTTGGGAGGAGGGAATGTTAC 57.268 47.619 0.00 0.00 0.00 2.50
346 347 1.591768 TGGGAGGAGGGAATGTTACC 58.408 55.000 0.00 0.00 0.00 2.85
347 348 1.203505 TGGGAGGAGGGAATGTTACCA 60.204 52.381 0.00 0.00 31.71 3.25
348 349 1.212195 GGGAGGAGGGAATGTTACCAC 59.788 57.143 0.00 0.00 31.71 4.16
349 350 1.212195 GGAGGAGGGAATGTTACCACC 59.788 57.143 2.50 2.50 41.81 4.61
350 351 1.913419 GAGGAGGGAATGTTACCACCA 59.087 52.381 12.27 0.00 43.74 4.17
351 352 1.916181 AGGAGGGAATGTTACCACCAG 59.084 52.381 12.27 0.00 43.74 4.00
352 353 1.682087 GGAGGGAATGTTACCACCAGC 60.682 57.143 5.68 0.00 41.21 4.85
353 354 1.282157 GAGGGAATGTTACCACCAGCT 59.718 52.381 0.00 0.00 31.71 4.24
354 355 1.710809 AGGGAATGTTACCACCAGCTT 59.289 47.619 0.00 0.00 31.71 3.74
355 356 1.818674 GGGAATGTTACCACCAGCTTG 59.181 52.381 0.00 0.00 0.00 4.01
356 357 2.514803 GGAATGTTACCACCAGCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
357 358 2.228822 GGAATGTTACCACCAGCTTGTG 59.771 50.000 10.93 10.93 35.98 3.33
358 359 2.949177 ATGTTACCACCAGCTTGTGA 57.051 45.000 19.03 0.00 38.55 3.58
359 360 1.961793 TGTTACCACCAGCTTGTGAC 58.038 50.000 19.03 9.94 38.55 3.67
360 361 0.865769 GTTACCACCAGCTTGTGACG 59.134 55.000 19.03 6.12 38.55 4.35
361 362 0.250124 TTACCACCAGCTTGTGACGG 60.250 55.000 19.03 5.43 38.55 4.79
362 363 2.725203 TACCACCAGCTTGTGACGGC 62.725 60.000 19.03 0.00 38.55 5.68
363 364 3.357079 CACCAGCTTGTGACGGCC 61.357 66.667 12.50 0.00 38.55 6.13
364 365 3.560251 ACCAGCTTGTGACGGCCT 61.560 61.111 0.00 0.00 0.00 5.19
365 366 2.281761 CCAGCTTGTGACGGCCTT 60.282 61.111 0.00 0.00 0.00 4.35
366 367 1.898574 CCAGCTTGTGACGGCCTTT 60.899 57.895 0.00 0.00 0.00 3.11
367 368 1.283793 CAGCTTGTGACGGCCTTTG 59.716 57.895 0.00 0.00 0.00 2.77
368 369 1.152963 AGCTTGTGACGGCCTTTGT 60.153 52.632 0.00 0.00 0.00 2.83
369 370 1.008538 GCTTGTGACGGCCTTTGTG 60.009 57.895 0.00 0.00 0.00 3.33
370 371 1.724582 GCTTGTGACGGCCTTTGTGT 61.725 55.000 0.00 0.00 0.00 3.72
371 372 0.738389 CTTGTGACGGCCTTTGTGTT 59.262 50.000 0.00 0.00 0.00 3.32
372 373 0.453793 TTGTGACGGCCTTTGTGTTG 59.546 50.000 0.00 0.00 0.00 3.33
373 374 1.358759 GTGACGGCCTTTGTGTTGG 59.641 57.895 0.00 0.00 0.00 3.77
374 375 1.098712 GTGACGGCCTTTGTGTTGGA 61.099 55.000 0.00 0.00 0.00 3.53
375 376 0.817634 TGACGGCCTTTGTGTTGGAG 60.818 55.000 0.00 0.00 0.00 3.86
376 377 0.534203 GACGGCCTTTGTGTTGGAGA 60.534 55.000 0.00 0.00 0.00 3.71
377 378 0.110486 ACGGCCTTTGTGTTGGAGAT 59.890 50.000 0.00 0.00 0.00 2.75
378 379 1.349688 ACGGCCTTTGTGTTGGAGATA 59.650 47.619 0.00 0.00 0.00 1.98
379 380 2.026262 ACGGCCTTTGTGTTGGAGATAT 60.026 45.455 0.00 0.00 0.00 1.63
380 381 2.355756 CGGCCTTTGTGTTGGAGATATG 59.644 50.000 0.00 0.00 0.00 1.78
381 382 3.356290 GGCCTTTGTGTTGGAGATATGT 58.644 45.455 0.00 0.00 0.00 2.29
382 383 3.129287 GGCCTTTGTGTTGGAGATATGTG 59.871 47.826 0.00 0.00 0.00 3.21
383 384 3.428045 GCCTTTGTGTTGGAGATATGTGC 60.428 47.826 0.00 0.00 0.00 4.57
384 385 3.758023 CCTTTGTGTTGGAGATATGTGCA 59.242 43.478 0.00 0.00 0.00 4.57
385 386 4.400251 CCTTTGTGTTGGAGATATGTGCAT 59.600 41.667 0.00 0.00 0.00 3.96
386 387 4.968812 TTGTGTTGGAGATATGTGCATG 57.031 40.909 0.00 0.00 0.00 4.06
387 388 4.219264 TGTGTTGGAGATATGTGCATGA 57.781 40.909 0.00 0.00 0.00 3.07
388 389 4.784177 TGTGTTGGAGATATGTGCATGAT 58.216 39.130 0.00 0.00 0.00 2.45
389 390 4.577283 TGTGTTGGAGATATGTGCATGATG 59.423 41.667 0.00 0.00 0.00 3.07
390 391 4.577693 GTGTTGGAGATATGTGCATGATGT 59.422 41.667 0.00 0.00 0.00 3.06
391 392 5.066893 GTGTTGGAGATATGTGCATGATGTT 59.933 40.000 0.00 0.00 0.00 2.71
392 393 5.066764 TGTTGGAGATATGTGCATGATGTTG 59.933 40.000 0.00 0.00 0.00 3.33
393 394 3.566742 TGGAGATATGTGCATGATGTTGC 59.433 43.478 0.00 0.00 43.07 4.17
394 395 3.819337 GGAGATATGTGCATGATGTTGCT 59.181 43.478 0.00 0.00 43.18 3.91
395 396 4.277672 GGAGATATGTGCATGATGTTGCTT 59.722 41.667 0.00 0.00 43.18 3.91
396 397 5.221185 GGAGATATGTGCATGATGTTGCTTT 60.221 40.000 0.00 0.00 43.18 3.51
397 398 6.216801 AGATATGTGCATGATGTTGCTTTT 57.783 33.333 0.00 0.00 43.18 2.27
398 399 6.040247 AGATATGTGCATGATGTTGCTTTTG 58.960 36.000 0.00 0.00 43.18 2.44
399 400 2.756829 TGTGCATGATGTTGCTTTTGG 58.243 42.857 0.00 0.00 43.18 3.28
400 401 2.102757 TGTGCATGATGTTGCTTTTGGT 59.897 40.909 0.00 0.00 43.18 3.67
401 402 3.132925 GTGCATGATGTTGCTTTTGGTT 58.867 40.909 0.00 0.00 43.18 3.67
402 403 3.059461 GTGCATGATGTTGCTTTTGGTTG 60.059 43.478 0.00 0.00 43.18 3.77
403 404 3.181468 TGCATGATGTTGCTTTTGGTTGA 60.181 39.130 0.00 0.00 43.18 3.18
404 405 3.808726 GCATGATGTTGCTTTTGGTTGAA 59.191 39.130 0.00 0.00 39.57 2.69
405 406 4.318974 GCATGATGTTGCTTTTGGTTGAAC 60.319 41.667 0.00 0.00 39.57 3.18
406 407 4.734398 TGATGTTGCTTTTGGTTGAACT 57.266 36.364 0.00 0.00 0.00 3.01
407 408 5.083533 TGATGTTGCTTTTGGTTGAACTT 57.916 34.783 0.00 0.00 0.00 2.66
408 409 6.214191 TGATGTTGCTTTTGGTTGAACTTA 57.786 33.333 0.00 0.00 0.00 2.24
409 410 6.272318 TGATGTTGCTTTTGGTTGAACTTAG 58.728 36.000 0.00 0.00 0.00 2.18
410 411 4.429108 TGTTGCTTTTGGTTGAACTTAGC 58.571 39.130 0.00 0.49 0.00 3.09
411 412 4.159506 TGTTGCTTTTGGTTGAACTTAGCT 59.840 37.500 0.00 0.00 0.00 3.32
412 413 5.109210 GTTGCTTTTGGTTGAACTTAGCTT 58.891 37.500 0.00 0.00 0.00 3.74
413 414 5.337578 TGCTTTTGGTTGAACTTAGCTTT 57.662 34.783 0.00 0.00 0.00 3.51
414 415 5.729510 TGCTTTTGGTTGAACTTAGCTTTT 58.270 33.333 0.00 0.00 0.00 2.27
415 416 5.580297 TGCTTTTGGTTGAACTTAGCTTTTG 59.420 36.000 0.00 0.00 0.00 2.44
416 417 5.006649 GCTTTTGGTTGAACTTAGCTTTTGG 59.993 40.000 0.00 0.00 0.00 3.28
417 418 5.923733 TTTGGTTGAACTTAGCTTTTGGA 57.076 34.783 0.00 0.00 0.00 3.53
418 419 6.478512 TTTGGTTGAACTTAGCTTTTGGAT 57.521 33.333 0.00 0.00 0.00 3.41
460 461 5.290493 TCGTGCATTTCTGTCCCTATTAT 57.710 39.130 0.00 0.00 0.00 1.28
464 465 6.402550 CGTGCATTTCTGTCCCTATTATATGC 60.403 42.308 0.00 0.00 37.10 3.14
465 466 5.945784 TGCATTTCTGTCCCTATTATATGCC 59.054 40.000 0.00 0.00 36.06 4.40
473 474 7.451255 TCTGTCCCTATTATATGCCCAAATTTG 59.549 37.037 11.40 11.40 0.00 2.32
665 676 3.148279 CTCCCTTCCCTCCGTCCG 61.148 72.222 0.00 0.00 0.00 4.79
751 762 1.630369 TCCATGCTCTTGTTGCTAGGT 59.370 47.619 0.00 0.00 0.00 3.08
817 828 4.396166 CAGGAGAAATCGTGCCACTAATTT 59.604 41.667 5.16 5.16 0.00 1.82
827 838 5.045215 CGTGCCACTAATTTCGAGGTATTA 58.955 41.667 0.00 0.00 0.00 0.98
849 860 4.365514 TGGATGGTTACACACATTGTCT 57.634 40.909 0.00 0.00 39.91 3.41
855 866 4.142038 GGTTACACACATTGTCTTCCCTT 58.858 43.478 0.00 0.00 39.91 3.95
858 869 2.362077 ACACACATTGTCTTCCCTTTGC 59.638 45.455 0.00 0.00 29.79 3.68
913 924 1.352114 CGGCATTTTGAATGCTGTGG 58.648 50.000 20.78 8.43 44.17 4.17
1071 1118 3.584250 GACCGTCGTCGTCTTCGCA 62.584 63.158 0.71 0.00 36.96 5.10
1073 1120 2.127345 CGTCGTCGTCTTCGCAGT 60.127 61.111 0.00 0.00 36.96 4.40
1102 1149 1.901085 GTCGGCTTCTGGATGGTCT 59.099 57.895 0.00 0.00 0.00 3.85
1110 1157 2.041922 TGGATGGTCTCCCCTCCG 60.042 66.667 0.00 0.00 45.87 4.63
1485 1532 3.134879 GTGGAGGACACGGTGACA 58.865 61.111 16.29 2.95 40.85 3.58
1523 1570 3.326747 CTTCTACCGACACCAAGGAAAG 58.673 50.000 0.00 0.00 0.00 2.62
1526 1573 2.556287 CGACACCAAGGAAAGCGC 59.444 61.111 0.00 0.00 0.00 5.92
1561 1608 0.318784 GGACGCGAACACTGAGAAGT 60.319 55.000 15.93 0.00 0.00 3.01
1885 1932 0.247736 GCAGAAGCTTCTTCCGGAGA 59.752 55.000 26.44 1.39 34.74 3.71
1891 1938 0.174617 GCTTCTTCCGGAGACTCTGG 59.825 60.000 22.71 22.71 44.41 3.86
2013 2063 7.960195 GCCGAGAAGAAAAAGAATAAGAAGAAG 59.040 37.037 0.00 0.00 0.00 2.85
2014 2064 9.209175 CCGAGAAGAAAAAGAATAAGAAGAAGA 57.791 33.333 0.00 0.00 0.00 2.87
3461 3726 1.228675 CCAAGCTCAAGGCCAGGTT 60.229 57.895 5.01 2.22 43.05 3.50
3486 3755 1.751927 CCACCCTCTACTACGCCGT 60.752 63.158 0.00 0.00 0.00 5.68
3490 3759 1.522355 CCTCTACTACGCCGTCGGA 60.522 63.158 17.49 0.00 40.69 4.55
3492 3761 0.809241 CTCTACTACGCCGTCGGACT 60.809 60.000 17.49 0.24 40.69 3.85
3493 3762 1.086067 TCTACTACGCCGTCGGACTG 61.086 60.000 17.49 6.24 40.69 3.51
3494 3763 1.079197 TACTACGCCGTCGGACTGA 60.079 57.895 17.49 0.00 40.69 3.41
3495 3764 0.462581 TACTACGCCGTCGGACTGAT 60.463 55.000 17.49 0.00 40.69 2.90
3496 3765 1.009900 CTACGCCGTCGGACTGATC 60.010 63.158 17.49 0.00 40.69 2.92
3497 3766 2.697250 CTACGCCGTCGGACTGATCG 62.697 65.000 17.49 10.40 40.69 3.69
3500 3769 3.822192 CCGTCGGACTGATCGCCA 61.822 66.667 4.91 0.00 0.00 5.69
3501 3770 2.413351 CGTCGGACTGATCGCCAT 59.587 61.111 6.57 0.00 0.00 4.40
3502 3771 1.226974 CGTCGGACTGATCGCCATT 60.227 57.895 6.57 0.00 0.00 3.16
3538 3811 8.088365 GCCATTGGACTACAACTAAGAAATTTT 58.912 33.333 6.95 0.00 42.94 1.82
3914 4191 3.955650 AGTGCGTACATAGGTTCTGTT 57.044 42.857 6.38 0.00 0.00 3.16
3915 4192 3.585862 AGTGCGTACATAGGTTCTGTTG 58.414 45.455 6.38 0.00 0.00 3.33
3916 4193 2.671396 GTGCGTACATAGGTTCTGTTGG 59.329 50.000 0.00 0.00 0.00 3.77
4110 4393 5.990668 AGATTGATCCCCACTTAGTTACAC 58.009 41.667 0.00 0.00 0.00 2.90
4156 4439 7.335422 CCTATGATTTTTATCGGCTATCTGCTT 59.665 37.037 0.00 0.00 42.39 3.91
4180 4463 2.932234 CGCACCTCTCCACGGTTCT 61.932 63.158 0.00 0.00 30.82 3.01
4183 4466 1.254026 CACCTCTCCACGGTTCTGTA 58.746 55.000 0.00 0.00 30.82 2.74
4236 4520 2.223180 CGCAACGGGCCTACTAAAAATC 60.223 50.000 0.84 0.00 40.31 2.17
4243 4527 5.365895 ACGGGCCTACTAAAAATCAGTCTAT 59.634 40.000 0.84 0.00 0.00 1.98
4283 4567 3.997681 TCAATCAACCATGCAGCATTTTG 59.002 39.130 16.18 16.18 0.00 2.44
4327 4611 0.104120 CCTATCGGTCGCAACATCCA 59.896 55.000 0.00 0.00 0.00 3.41
4333 4617 0.099436 GGTCGCAACATCCATCTTGC 59.901 55.000 0.00 0.00 39.57 4.01
4366 4650 4.286297 TGTCTTCCCTCATTGGTTGTAG 57.714 45.455 0.00 0.00 0.00 2.74
4367 4651 3.010420 GTCTTCCCTCATTGGTTGTAGC 58.990 50.000 0.00 0.00 0.00 3.58
4368 4652 2.642311 TCTTCCCTCATTGGTTGTAGCA 59.358 45.455 0.00 0.00 0.00 3.49
4370 4654 1.086696 CCCTCATTGGTTGTAGCACG 58.913 55.000 0.00 0.00 0.00 5.34
4372 4656 1.732259 CCTCATTGGTTGTAGCACGTC 59.268 52.381 0.00 0.00 0.00 4.34
4373 4657 2.412870 CTCATTGGTTGTAGCACGTCA 58.587 47.619 0.00 0.00 0.00 4.35
4374 4658 3.002791 CTCATTGGTTGTAGCACGTCAT 58.997 45.455 0.00 0.00 0.00 3.06
4375 4659 3.000041 TCATTGGTTGTAGCACGTCATC 59.000 45.455 0.00 0.00 0.00 2.92
4376 4660 1.424403 TTGGTTGTAGCACGTCATCG 58.576 50.000 0.00 0.00 43.34 3.84
4379 4663 0.999406 GTTGTAGCACGTCATCGCAT 59.001 50.000 0.00 0.00 41.18 4.73
4381 4665 0.865639 TGTAGCACGTCATCGCATCG 60.866 55.000 0.00 0.00 41.18 3.84
4382 4666 1.299089 TAGCACGTCATCGCATCGG 60.299 57.895 0.00 0.00 41.18 4.18
4383 4667 2.000215 TAGCACGTCATCGCATCGGT 62.000 55.000 0.00 0.00 41.18 4.69
4412 4696 3.734463 TCTTTCATTGACGGTTGTAGCA 58.266 40.909 0.00 0.00 0.00 3.49
4459 4743 7.570875 GCATTTATTGTTGTTGCTTGCAATACA 60.571 33.333 11.32 14.50 34.70 2.29
4496 4780 1.302383 CCGCCGTTTGTAGCATCCAA 61.302 55.000 0.00 0.00 0.00 3.53
4505 4789 0.391130 GTAGCATCCAACCGTGCAGA 60.391 55.000 0.00 0.00 43.63 4.26
4507 4791 0.322816 AGCATCCAACCGTGCAGATT 60.323 50.000 0.00 0.00 43.63 2.40
4540 4824 0.952280 ACACACTCACGTCACTCGAT 59.048 50.000 0.00 0.00 42.86 3.59
4543 4827 1.607148 ACACTCACGTCACTCGATTGA 59.393 47.619 0.65 0.65 42.86 2.57
4558 4842 6.528423 CACTCGATTGAGACTTCGTTAAATCT 59.472 38.462 17.27 0.00 45.57 2.40
4584 4868 2.095161 CGACTGAGTTCTAGACACACCC 60.095 54.545 0.00 0.00 0.00 4.61
4590 4874 5.330233 TGAGTTCTAGACACACCCTTATCA 58.670 41.667 0.00 0.00 0.00 2.15
4591 4875 5.958380 TGAGTTCTAGACACACCCTTATCAT 59.042 40.000 0.00 0.00 0.00 2.45
4620 4906 2.215196 GGTTTATCATCGCCCGCTTAA 58.785 47.619 0.00 0.00 0.00 1.85
4652 5104 5.476599 CCTTCACCTTTCATATCAACCACAA 59.523 40.000 0.00 0.00 0.00 3.33
4655 5107 6.068010 TCACCTTTCATATCAACCACAACTT 58.932 36.000 0.00 0.00 0.00 2.66
4671 5123 0.324614 ACTTCATGCCACCGATCACA 59.675 50.000 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.227002 GTGGATCCGGTCTCTTCGC 60.227 63.158 7.39 0.00 0.00 4.70
1 2 1.064296 CGTGGATCCGGTCTCTTCG 59.936 63.158 7.39 5.71 0.00 3.79
2 3 1.437986 CCGTGGATCCGGTCTCTTC 59.562 63.158 7.39 0.00 43.07 2.87
3 4 3.617368 CCGTGGATCCGGTCTCTT 58.383 61.111 7.39 0.00 43.07 2.85
10 11 1.743995 GGGTTTGTCCGTGGATCCG 60.744 63.158 7.39 0.00 37.00 4.18
11 12 1.378119 GGGGTTTGTCCGTGGATCC 60.378 63.158 4.20 4.20 37.00 3.36
12 13 1.378119 GGGGGTTTGTCCGTGGATC 60.378 63.158 0.00 0.00 37.00 3.36
13 14 2.761160 GGGGGTTTGTCCGTGGAT 59.239 61.111 0.00 0.00 37.00 3.41
14 15 3.943691 CGGGGGTTTGTCCGTGGA 61.944 66.667 0.00 0.00 41.23 4.02
16 17 3.943691 TCCGGGGGTTTGTCCGTG 61.944 66.667 0.00 0.00 44.32 4.94
17 18 3.944945 GTCCGGGGGTTTGTCCGT 61.945 66.667 0.00 0.00 44.32 4.69
18 19 2.962142 TTTGTCCGGGGGTTTGTCCG 62.962 60.000 0.00 0.00 45.29 4.79
19 20 1.152715 TTTGTCCGGGGGTTTGTCC 60.153 57.895 0.00 0.00 0.00 4.02
20 21 1.788067 CGTTTGTCCGGGGGTTTGTC 61.788 60.000 0.00 0.00 0.00 3.18
21 22 1.824760 CGTTTGTCCGGGGGTTTGT 60.825 57.895 0.00 0.00 0.00 2.83
22 23 3.035727 CGTTTGTCCGGGGGTTTG 58.964 61.111 0.00 0.00 0.00 2.93
23 24 2.908428 GCGTTTGTCCGGGGGTTT 60.908 61.111 0.00 0.00 0.00 3.27
24 25 4.192453 TGCGTTTGTCCGGGGGTT 62.192 61.111 0.00 0.00 0.00 4.11
25 26 4.636435 CTGCGTTTGTCCGGGGGT 62.636 66.667 0.00 0.00 0.00 4.95
26 27 3.622060 ATCTGCGTTTGTCCGGGGG 62.622 63.158 0.00 0.00 0.00 5.40
27 28 2.046314 ATCTGCGTTTGTCCGGGG 60.046 61.111 0.00 0.00 0.00 5.73
28 29 1.079127 AGATCTGCGTTTGTCCGGG 60.079 57.895 0.00 0.00 0.00 5.73
29 30 1.361668 CCAGATCTGCGTTTGTCCGG 61.362 60.000 17.76 0.00 0.00 5.14
30 31 0.389817 TCCAGATCTGCGTTTGTCCG 60.390 55.000 17.76 0.35 0.00 4.79
31 32 1.808411 TTCCAGATCTGCGTTTGTCC 58.192 50.000 17.76 0.00 0.00 4.02
32 33 2.096496 CCATTCCAGATCTGCGTTTGTC 59.904 50.000 17.76 0.00 0.00 3.18
33 34 2.086869 CCATTCCAGATCTGCGTTTGT 58.913 47.619 17.76 0.00 0.00 2.83
34 35 2.353889 CTCCATTCCAGATCTGCGTTTG 59.646 50.000 17.76 10.89 0.00 2.93
35 36 2.636830 CTCCATTCCAGATCTGCGTTT 58.363 47.619 17.76 0.00 0.00 3.60
36 37 1.134280 CCTCCATTCCAGATCTGCGTT 60.134 52.381 17.76 0.46 0.00 4.84
37 38 0.467384 CCTCCATTCCAGATCTGCGT 59.533 55.000 17.76 2.11 0.00 5.24
38 39 0.883814 GCCTCCATTCCAGATCTGCG 60.884 60.000 17.76 10.69 0.00 5.18
39 40 0.883814 CGCCTCCATTCCAGATCTGC 60.884 60.000 17.76 1.42 0.00 4.26
40 41 0.250209 CCGCCTCCATTCCAGATCTG 60.250 60.000 16.24 16.24 0.00 2.90
41 42 1.414061 CCCGCCTCCATTCCAGATCT 61.414 60.000 0.00 0.00 0.00 2.75
42 43 1.072159 CCCGCCTCCATTCCAGATC 59.928 63.158 0.00 0.00 0.00 2.75
43 44 3.125376 GCCCGCCTCCATTCCAGAT 62.125 63.158 0.00 0.00 0.00 2.90
44 45 3.797353 GCCCGCCTCCATTCCAGA 61.797 66.667 0.00 0.00 0.00 3.86
45 46 3.801997 AGCCCGCCTCCATTCCAG 61.802 66.667 0.00 0.00 0.00 3.86
46 47 4.113815 CAGCCCGCCTCCATTCCA 62.114 66.667 0.00 0.00 0.00 3.53
47 48 4.883354 CCAGCCCGCCTCCATTCC 62.883 72.222 0.00 0.00 0.00 3.01
61 62 3.801997 AGCGAAGGATGGGGCCAG 61.802 66.667 4.39 0.00 0.00 4.85
62 63 4.113815 CAGCGAAGGATGGGGCCA 62.114 66.667 4.39 0.00 0.00 5.36
65 66 4.113815 TGGCAGCGAAGGATGGGG 62.114 66.667 0.00 0.00 0.00 4.96
66 67 2.825836 GTGGCAGCGAAGGATGGG 60.826 66.667 0.00 0.00 0.00 4.00
67 68 3.197790 CGTGGCAGCGAAGGATGG 61.198 66.667 3.87 0.00 0.00 3.51
68 69 3.869272 GCGTGGCAGCGAAGGATG 61.869 66.667 12.46 0.00 0.00 3.51
77 78 4.827087 ATCCAGCTCGCGTGGCAG 62.827 66.667 23.08 17.02 34.77 4.85
78 79 4.819761 GATCCAGCTCGCGTGGCA 62.820 66.667 23.08 8.59 34.77 4.92
79 80 4.521062 AGATCCAGCTCGCGTGGC 62.521 66.667 16.25 16.25 34.77 5.01
80 81 2.584418 CAGATCCAGCTCGCGTGG 60.584 66.667 5.77 7.00 36.28 4.94
81 82 2.584418 CCAGATCCAGCTCGCGTG 60.584 66.667 5.77 4.44 0.00 5.34
82 83 4.521062 GCCAGATCCAGCTCGCGT 62.521 66.667 5.77 0.00 0.00 6.01
83 84 4.519437 TGCCAGATCCAGCTCGCG 62.519 66.667 0.00 0.00 0.00 5.87
84 85 2.588314 CTGCCAGATCCAGCTCGC 60.588 66.667 6.18 0.00 0.00 5.03
85 86 1.067749 CTCTGCCAGATCCAGCTCG 59.932 63.158 0.00 0.00 0.00 5.03
86 87 1.227615 GCTCTGCCAGATCCAGCTC 60.228 63.158 0.00 0.00 0.00 4.09
87 88 2.909577 GCTCTGCCAGATCCAGCT 59.090 61.111 0.00 0.00 0.00 4.24
114 115 0.734253 CTGTAGTGGTCGCTCAGTGC 60.734 60.000 0.00 0.00 38.57 4.40
115 116 0.734253 GCTGTAGTGGTCGCTCAGTG 60.734 60.000 10.34 0.00 0.00 3.66
116 117 1.587054 GCTGTAGTGGTCGCTCAGT 59.413 57.895 10.34 0.00 0.00 3.41
117 118 1.153745 GGCTGTAGTGGTCGCTCAG 60.154 63.158 0.00 0.00 0.00 3.35
118 119 2.970639 GGCTGTAGTGGTCGCTCA 59.029 61.111 0.00 0.00 0.00 4.26
119 120 2.202623 CGGCTGTAGTGGTCGCTC 60.203 66.667 0.00 0.00 0.00 5.03
120 121 2.214181 CTTCGGCTGTAGTGGTCGCT 62.214 60.000 0.00 0.00 0.00 4.93
121 122 1.805945 CTTCGGCTGTAGTGGTCGC 60.806 63.158 0.00 0.00 0.00 5.19
122 123 0.732880 CACTTCGGCTGTAGTGGTCG 60.733 60.000 21.23 0.00 39.17 4.79
123 124 3.123674 CACTTCGGCTGTAGTGGTC 57.876 57.895 21.23 0.00 39.17 4.02
143 144 4.530857 CCTTCCTAGCACCGCCGG 62.531 72.222 0.00 0.00 0.00 6.13
144 145 4.530857 CCCTTCCTAGCACCGCCG 62.531 72.222 0.00 0.00 0.00 6.46
145 146 4.176752 CCCCTTCCTAGCACCGCC 62.177 72.222 0.00 0.00 0.00 6.13
146 147 3.400054 ACCCCTTCCTAGCACCGC 61.400 66.667 0.00 0.00 0.00 5.68
147 148 2.584608 CACCCCTTCCTAGCACCG 59.415 66.667 0.00 0.00 0.00 4.94
148 149 2.680370 CCCACCCCTTCCTAGCACC 61.680 68.421 0.00 0.00 0.00 5.01
149 150 1.205460 TTCCCACCCCTTCCTAGCAC 61.205 60.000 0.00 0.00 0.00 4.40
150 151 1.162329 TTCCCACCCCTTCCTAGCA 59.838 57.895 0.00 0.00 0.00 3.49
151 152 1.205460 TGTTCCCACCCCTTCCTAGC 61.205 60.000 0.00 0.00 0.00 3.42
152 153 1.282157 CTTGTTCCCACCCCTTCCTAG 59.718 57.143 0.00 0.00 0.00 3.02
153 154 1.368374 CTTGTTCCCACCCCTTCCTA 58.632 55.000 0.00 0.00 0.00 2.94
154 155 1.435346 CCTTGTTCCCACCCCTTCCT 61.435 60.000 0.00 0.00 0.00 3.36
155 156 1.076727 CCTTGTTCCCACCCCTTCC 59.923 63.158 0.00 0.00 0.00 3.46
156 157 0.038310 CTCCTTGTTCCCACCCCTTC 59.962 60.000 0.00 0.00 0.00 3.46
157 158 2.081585 GCTCCTTGTTCCCACCCCTT 62.082 60.000 0.00 0.00 0.00 3.95
158 159 2.539081 GCTCCTTGTTCCCACCCCT 61.539 63.158 0.00 0.00 0.00 4.79
159 160 2.035783 GCTCCTTGTTCCCACCCC 59.964 66.667 0.00 0.00 0.00 4.95
160 161 1.303643 CTGCTCCTTGTTCCCACCC 60.304 63.158 0.00 0.00 0.00 4.61
161 162 1.973812 GCTGCTCCTTGTTCCCACC 60.974 63.158 0.00 0.00 0.00 4.61
162 163 0.957888 GAGCTGCTCCTTGTTCCCAC 60.958 60.000 18.80 0.00 0.00 4.61
163 164 1.130054 AGAGCTGCTCCTTGTTCCCA 61.130 55.000 25.09 0.00 0.00 4.37
164 165 0.392327 GAGAGCTGCTCCTTGTTCCC 60.392 60.000 25.09 0.00 37.69 3.97
165 166 0.322975 TGAGAGCTGCTCCTTGTTCC 59.677 55.000 25.09 7.36 43.26 3.62
166 167 1.001860 AGTGAGAGCTGCTCCTTGTTC 59.998 52.381 25.09 16.04 43.26 3.18
167 168 1.001860 GAGTGAGAGCTGCTCCTTGTT 59.998 52.381 25.09 7.06 43.26 2.83
168 169 0.607620 GAGTGAGAGCTGCTCCTTGT 59.392 55.000 25.09 7.46 43.26 3.16
169 170 0.607112 TGAGTGAGAGCTGCTCCTTG 59.393 55.000 25.09 0.00 43.26 3.61
170 171 0.607620 GTGAGTGAGAGCTGCTCCTT 59.392 55.000 25.09 8.64 43.26 3.36
171 172 1.257055 GGTGAGTGAGAGCTGCTCCT 61.257 60.000 25.09 15.51 43.26 3.69
172 173 1.217779 GGTGAGTGAGAGCTGCTCC 59.782 63.158 25.09 16.80 43.26 4.70
173 174 1.405105 CTAGGTGAGTGAGAGCTGCTC 59.595 57.143 21.72 21.72 44.21 4.26
174 175 1.005332 TCTAGGTGAGTGAGAGCTGCT 59.995 52.381 0.00 0.00 0.00 4.24
175 176 1.134175 GTCTAGGTGAGTGAGAGCTGC 59.866 57.143 0.00 0.00 0.00 5.25
176 177 1.748493 GGTCTAGGTGAGTGAGAGCTG 59.252 57.143 0.00 0.00 35.36 4.24
177 178 1.341581 GGGTCTAGGTGAGTGAGAGCT 60.342 57.143 0.00 0.00 37.74 4.09
178 179 1.107945 GGGTCTAGGTGAGTGAGAGC 58.892 60.000 0.00 0.00 37.06 4.09
179 180 1.006043 TGGGGTCTAGGTGAGTGAGAG 59.994 57.143 0.00 0.00 0.00 3.20
180 181 1.081481 TGGGGTCTAGGTGAGTGAGA 58.919 55.000 0.00 0.00 0.00 3.27
181 182 1.938585 TTGGGGTCTAGGTGAGTGAG 58.061 55.000 0.00 0.00 0.00 3.51
182 183 2.370849 GTTTTGGGGTCTAGGTGAGTGA 59.629 50.000 0.00 0.00 0.00 3.41
183 184 2.552373 GGTTTTGGGGTCTAGGTGAGTG 60.552 54.545 0.00 0.00 0.00 3.51
184 185 1.703513 GGTTTTGGGGTCTAGGTGAGT 59.296 52.381 0.00 0.00 0.00 3.41
185 186 1.338769 CGGTTTTGGGGTCTAGGTGAG 60.339 57.143 0.00 0.00 0.00 3.51
186 187 0.688487 CGGTTTTGGGGTCTAGGTGA 59.312 55.000 0.00 0.00 0.00 4.02
187 188 0.322187 CCGGTTTTGGGGTCTAGGTG 60.322 60.000 0.00 0.00 0.00 4.00
188 189 1.494716 CCCGGTTTTGGGGTCTAGGT 61.495 60.000 0.00 0.00 46.17 3.08
189 190 1.301954 CCCGGTTTTGGGGTCTAGG 59.698 63.158 0.00 0.00 46.17 3.02
206 207 4.821589 CTCCTCGCTCGGTTGCCC 62.822 72.222 0.00 0.00 0.00 5.36
207 208 3.296709 TTCTCCTCGCTCGGTTGCC 62.297 63.158 0.00 0.00 0.00 4.52
208 209 1.807573 CTTCTCCTCGCTCGGTTGC 60.808 63.158 0.00 0.00 0.00 4.17
209 210 0.809385 TACTTCTCCTCGCTCGGTTG 59.191 55.000 0.00 0.00 0.00 3.77
210 211 1.201880 GTTACTTCTCCTCGCTCGGTT 59.798 52.381 0.00 0.00 0.00 4.44
211 212 0.810016 GTTACTTCTCCTCGCTCGGT 59.190 55.000 0.00 0.00 0.00 4.69
212 213 0.809385 TGTTACTTCTCCTCGCTCGG 59.191 55.000 0.00 0.00 0.00 4.63
213 214 2.853731 ATGTTACTTCTCCTCGCTCG 57.146 50.000 0.00 0.00 0.00 5.03
214 215 4.634184 TGTATGTTACTTCTCCTCGCTC 57.366 45.455 0.00 0.00 0.00 5.03
215 216 4.463186 AGTTGTATGTTACTTCTCCTCGCT 59.537 41.667 0.00 0.00 0.00 4.93
216 217 4.745649 AGTTGTATGTTACTTCTCCTCGC 58.254 43.478 0.00 0.00 0.00 5.03
217 218 5.950883 TGAGTTGTATGTTACTTCTCCTCG 58.049 41.667 0.00 0.00 32.55 4.63
218 219 7.324178 ACATGAGTTGTATGTTACTTCTCCTC 58.676 38.462 0.00 0.00 36.57 3.71
219 220 7.246171 ACATGAGTTGTATGTTACTTCTCCT 57.754 36.000 0.00 0.00 36.57 3.69
232 233 8.262601 AGGGTGATAATGATACATGAGTTGTA 57.737 34.615 0.00 0.00 44.71 2.41
233 234 7.141758 AGGGTGATAATGATACATGAGTTGT 57.858 36.000 0.00 0.00 42.62 3.32
234 235 6.652481 GGAGGGTGATAATGATACATGAGTTG 59.348 42.308 0.00 0.00 0.00 3.16
235 236 6.519043 CGGAGGGTGATAATGATACATGAGTT 60.519 42.308 0.00 0.00 0.00 3.01
236 237 5.047021 CGGAGGGTGATAATGATACATGAGT 60.047 44.000 0.00 0.00 0.00 3.41
237 238 5.414360 CGGAGGGTGATAATGATACATGAG 58.586 45.833 0.00 0.00 0.00 2.90
238 239 5.405935 CGGAGGGTGATAATGATACATGA 57.594 43.478 0.00 0.00 0.00 3.07
255 256 1.108132 GACTAGGGTAGTGCCGGAGG 61.108 65.000 5.05 0.00 46.51 4.30
256 257 0.106619 AGACTAGGGTAGTGCCGGAG 60.107 60.000 5.05 0.00 39.59 4.63
257 258 0.395311 CAGACTAGGGTAGTGCCGGA 60.395 60.000 5.05 0.00 39.59 5.14
258 259 0.683504 ACAGACTAGGGTAGTGCCGG 60.684 60.000 0.00 0.00 39.59 6.13
259 260 0.456221 CACAGACTAGGGTAGTGCCG 59.544 60.000 0.00 0.00 39.59 5.69
260 261 1.848652 TCACAGACTAGGGTAGTGCC 58.151 55.000 0.00 0.00 39.59 5.01
261 262 3.955650 TTTCACAGACTAGGGTAGTGC 57.044 47.619 0.00 0.00 39.59 4.40
288 289 1.538950 GTATCCTACTCCGCCCGTAAG 59.461 57.143 0.00 0.00 0.00 2.34
289 290 1.133823 TGTATCCTACTCCGCCCGTAA 60.134 52.381 0.00 0.00 0.00 3.18
290 291 0.473755 TGTATCCTACTCCGCCCGTA 59.526 55.000 0.00 0.00 0.00 4.02
291 292 0.396139 TTGTATCCTACTCCGCCCGT 60.396 55.000 0.00 0.00 0.00 5.28
292 293 0.966920 ATTGTATCCTACTCCGCCCG 59.033 55.000 0.00 0.00 0.00 6.13
293 294 1.002087 CCATTGTATCCTACTCCGCCC 59.998 57.143 0.00 0.00 0.00 6.13
294 295 1.002087 CCCATTGTATCCTACTCCGCC 59.998 57.143 0.00 0.00 0.00 6.13
295 296 1.002087 CCCCATTGTATCCTACTCCGC 59.998 57.143 0.00 0.00 0.00 5.54
296 297 2.037251 CACCCCATTGTATCCTACTCCG 59.963 54.545 0.00 0.00 0.00 4.63
297 298 2.372172 CCACCCCATTGTATCCTACTCC 59.628 54.545 0.00 0.00 0.00 3.85
298 299 3.046374 ACCACCCCATTGTATCCTACTC 58.954 50.000 0.00 0.00 0.00 2.59
299 300 2.777692 CACCACCCCATTGTATCCTACT 59.222 50.000 0.00 0.00 0.00 2.57
300 301 2.748465 GCACCACCCCATTGTATCCTAC 60.748 54.545 0.00 0.00 0.00 3.18
301 302 1.493022 GCACCACCCCATTGTATCCTA 59.507 52.381 0.00 0.00 0.00 2.94
302 303 0.258774 GCACCACCCCATTGTATCCT 59.741 55.000 0.00 0.00 0.00 3.24
303 304 1.101049 CGCACCACCCCATTGTATCC 61.101 60.000 0.00 0.00 0.00 2.59
304 305 1.724582 GCGCACCACCCCATTGTATC 61.725 60.000 0.30 0.00 0.00 2.24
305 306 1.752694 GCGCACCACCCCATTGTAT 60.753 57.895 0.30 0.00 0.00 2.29
306 307 2.360600 GCGCACCACCCCATTGTA 60.361 61.111 0.30 0.00 0.00 2.41
307 308 3.808218 AAGCGCACCACCCCATTGT 62.808 57.895 11.47 0.00 0.00 2.71
308 309 2.098426 AAAAGCGCACCACCCCATTG 62.098 55.000 11.47 0.00 0.00 2.82
309 310 1.836604 AAAAGCGCACCACCCCATT 60.837 52.632 11.47 0.00 0.00 3.16
310 311 2.203625 AAAAGCGCACCACCCCAT 60.204 55.556 11.47 0.00 0.00 4.00
311 312 3.222855 CAAAAGCGCACCACCCCA 61.223 61.111 11.47 0.00 0.00 4.96
312 313 3.989787 CCAAAAGCGCACCACCCC 61.990 66.667 11.47 0.00 0.00 4.95
313 314 3.989787 CCCAAAAGCGCACCACCC 61.990 66.667 11.47 0.00 0.00 4.61
314 315 2.909965 TCCCAAAAGCGCACCACC 60.910 61.111 11.47 0.00 0.00 4.61
315 316 2.644992 CTCCCAAAAGCGCACCAC 59.355 61.111 11.47 0.00 0.00 4.16
316 317 2.597217 CCTCCCAAAAGCGCACCA 60.597 61.111 11.47 0.00 0.00 4.17
317 318 2.282180 TCCTCCCAAAAGCGCACC 60.282 61.111 11.47 0.00 0.00 5.01
318 319 2.335712 CCTCCTCCCAAAAGCGCAC 61.336 63.158 11.47 0.00 0.00 5.34
319 320 2.034066 CCTCCTCCCAAAAGCGCA 59.966 61.111 11.47 0.00 0.00 6.09
320 321 2.751837 CCCTCCTCCCAAAAGCGC 60.752 66.667 0.00 0.00 0.00 5.92
321 322 0.034089 ATTCCCTCCTCCCAAAAGCG 60.034 55.000 0.00 0.00 0.00 4.68
322 323 1.272704 ACATTCCCTCCTCCCAAAAGC 60.273 52.381 0.00 0.00 0.00 3.51
323 324 2.907458 ACATTCCCTCCTCCCAAAAG 57.093 50.000 0.00 0.00 0.00 2.27
324 325 3.245479 GGTAACATTCCCTCCTCCCAAAA 60.245 47.826 0.00 0.00 0.00 2.44
325 326 2.310647 GGTAACATTCCCTCCTCCCAAA 59.689 50.000 0.00 0.00 0.00 3.28
326 327 1.920351 GGTAACATTCCCTCCTCCCAA 59.080 52.381 0.00 0.00 0.00 4.12
327 328 1.203505 TGGTAACATTCCCTCCTCCCA 60.204 52.381 0.00 0.00 46.17 4.37
328 329 1.591768 TGGTAACATTCCCTCCTCCC 58.408 55.000 0.00 0.00 46.17 4.30
341 342 0.865769 CGTCACAAGCTGGTGGTAAC 59.134 55.000 21.25 11.08 39.27 2.50
342 343 0.250124 CCGTCACAAGCTGGTGGTAA 60.250 55.000 21.25 0.00 39.27 2.85
343 344 1.369692 CCGTCACAAGCTGGTGGTA 59.630 57.895 21.25 0.00 39.27 3.25
344 345 2.111043 CCGTCACAAGCTGGTGGT 59.889 61.111 21.25 0.00 39.27 4.16
345 346 3.357079 GCCGTCACAAGCTGGTGG 61.357 66.667 21.25 6.56 39.27 4.61
346 347 3.357079 GGCCGTCACAAGCTGGTG 61.357 66.667 15.67 15.67 40.16 4.17
347 348 2.624674 AAAGGCCGTCACAAGCTGGT 62.625 55.000 0.00 0.00 0.00 4.00
348 349 1.898574 AAAGGCCGTCACAAGCTGG 60.899 57.895 0.00 0.00 0.00 4.85
349 350 1.283793 CAAAGGCCGTCACAAGCTG 59.716 57.895 0.00 0.00 0.00 4.24
350 351 1.152963 ACAAAGGCCGTCACAAGCT 60.153 52.632 0.00 0.00 0.00 3.74
351 352 1.008538 CACAAAGGCCGTCACAAGC 60.009 57.895 0.00 0.00 0.00 4.01
352 353 0.738389 AACACAAAGGCCGTCACAAG 59.262 50.000 0.00 0.00 0.00 3.16
353 354 0.453793 CAACACAAAGGCCGTCACAA 59.546 50.000 0.00 0.00 0.00 3.33
354 355 1.380403 CCAACACAAAGGCCGTCACA 61.380 55.000 0.00 0.00 0.00 3.58
355 356 1.098712 TCCAACACAAAGGCCGTCAC 61.099 55.000 0.00 0.00 0.00 3.67
356 357 0.817634 CTCCAACACAAAGGCCGTCA 60.818 55.000 0.00 0.00 0.00 4.35
357 358 0.534203 TCTCCAACACAAAGGCCGTC 60.534 55.000 0.00 0.00 0.00 4.79
358 359 0.110486 ATCTCCAACACAAAGGCCGT 59.890 50.000 0.00 0.00 0.00 5.68
359 360 2.107950 TATCTCCAACACAAAGGCCG 57.892 50.000 0.00 0.00 0.00 6.13
360 361 3.129287 CACATATCTCCAACACAAAGGCC 59.871 47.826 0.00 0.00 0.00 5.19
361 362 3.428045 GCACATATCTCCAACACAAAGGC 60.428 47.826 0.00 0.00 0.00 4.35
362 363 3.758023 TGCACATATCTCCAACACAAAGG 59.242 43.478 0.00 0.00 0.00 3.11
363 364 5.124297 TCATGCACATATCTCCAACACAAAG 59.876 40.000 0.00 0.00 0.00 2.77
364 365 5.008980 TCATGCACATATCTCCAACACAAA 58.991 37.500 0.00 0.00 0.00 2.83
365 366 4.587891 TCATGCACATATCTCCAACACAA 58.412 39.130 0.00 0.00 0.00 3.33
366 367 4.219264 TCATGCACATATCTCCAACACA 57.781 40.909 0.00 0.00 0.00 3.72
367 368 4.577693 ACATCATGCACATATCTCCAACAC 59.422 41.667 0.00 0.00 0.00 3.32
368 369 4.784177 ACATCATGCACATATCTCCAACA 58.216 39.130 0.00 0.00 0.00 3.33
369 370 5.516996 CAACATCATGCACATATCTCCAAC 58.483 41.667 0.00 0.00 0.00 3.77
370 371 4.037089 GCAACATCATGCACATATCTCCAA 59.963 41.667 0.00 0.00 45.70 3.53
371 372 3.566742 GCAACATCATGCACATATCTCCA 59.433 43.478 0.00 0.00 45.70 3.86
372 373 4.156664 GCAACATCATGCACATATCTCC 57.843 45.455 0.00 0.00 45.70 3.71
382 383 3.391965 TCAACCAAAAGCAACATCATGC 58.608 40.909 0.00 0.00 46.78 4.06
383 384 5.051816 AGTTCAACCAAAAGCAACATCATG 58.948 37.500 0.00 0.00 0.00 3.07
384 385 5.280654 AGTTCAACCAAAAGCAACATCAT 57.719 34.783 0.00 0.00 0.00 2.45
385 386 4.734398 AGTTCAACCAAAAGCAACATCA 57.266 36.364 0.00 0.00 0.00 3.07
386 387 5.175673 GCTAAGTTCAACCAAAAGCAACATC 59.824 40.000 0.00 0.00 0.00 3.06
387 388 5.049828 GCTAAGTTCAACCAAAAGCAACAT 58.950 37.500 0.00 0.00 0.00 2.71
388 389 4.159506 AGCTAAGTTCAACCAAAAGCAACA 59.840 37.500 0.00 0.00 0.00 3.33
389 390 4.682787 AGCTAAGTTCAACCAAAAGCAAC 58.317 39.130 0.00 0.00 0.00 4.17
390 391 5.337578 AAGCTAAGTTCAACCAAAAGCAA 57.662 34.783 0.00 0.00 0.00 3.91
391 392 5.337578 AAAGCTAAGTTCAACCAAAAGCA 57.662 34.783 0.00 0.00 0.00 3.91
392 393 5.006649 CCAAAAGCTAAGTTCAACCAAAAGC 59.993 40.000 0.00 0.00 0.00 3.51
393 394 6.337356 TCCAAAAGCTAAGTTCAACCAAAAG 58.663 36.000 0.00 0.00 0.00 2.27
394 395 6.287589 TCCAAAAGCTAAGTTCAACCAAAA 57.712 33.333 0.00 0.00 0.00 2.44
395 396 5.923733 TCCAAAAGCTAAGTTCAACCAAA 57.076 34.783 0.00 0.00 0.00 3.28
396 397 7.589958 TTATCCAAAAGCTAAGTTCAACCAA 57.410 32.000 0.00 0.00 0.00 3.67
397 398 7.450014 TCATTATCCAAAAGCTAAGTTCAACCA 59.550 33.333 0.00 0.00 0.00 3.67
398 399 7.826690 TCATTATCCAAAAGCTAAGTTCAACC 58.173 34.615 0.00 0.00 0.00 3.77
399 400 9.860898 AATCATTATCCAAAAGCTAAGTTCAAC 57.139 29.630 0.00 0.00 0.00 3.18
473 474 5.183228 TCCATACTTTCAGTTTTCCGATCC 58.817 41.667 0.00 0.00 0.00 3.36
475 476 7.393234 TCAAATCCATACTTTCAGTTTTCCGAT 59.607 33.333 0.00 0.00 0.00 4.18
476 477 6.712998 TCAAATCCATACTTTCAGTTTTCCGA 59.287 34.615 0.00 0.00 0.00 4.55
477 478 6.908825 TCAAATCCATACTTTCAGTTTTCCG 58.091 36.000 0.00 0.00 0.00 4.30
478 479 9.710900 ATTTCAAATCCATACTTTCAGTTTTCC 57.289 29.630 0.00 0.00 0.00 3.13
520 523 5.738783 GCCAAGCTTTTCAGGTTTCAACATA 60.739 40.000 0.00 0.00 38.76 2.29
522 525 3.678529 GCCAAGCTTTTCAGGTTTCAACA 60.679 43.478 0.00 0.00 38.76 3.33
554 557 2.086869 GTCCTGTATGTGCATGTGCTT 58.913 47.619 6.55 0.00 42.66 3.91
665 676 1.209261 CTTTCAAGGGGAGGAGAGCTC 59.791 57.143 5.27 5.27 0.00 4.09
744 755 2.167693 CCGGTCACTTCAATACCTAGCA 59.832 50.000 0.00 0.00 0.00 3.49
751 762 3.371034 TGATCTCCCGGTCACTTCAATA 58.629 45.455 0.00 0.00 0.00 1.90
817 828 5.599242 TGTGTAACCATCCATAATACCTCGA 59.401 40.000 0.00 0.00 34.36 4.04
827 838 4.922206 AGACAATGTGTGTAACCATCCAT 58.078 39.130 0.00 0.00 41.96 3.41
849 860 4.447138 TCAGGAAACTAAGCAAAGGGAA 57.553 40.909 0.00 0.00 40.21 3.97
855 866 6.479660 CAGCAAAATTTCAGGAAACTAAGCAA 59.520 34.615 0.00 0.00 40.21 3.91
858 869 7.706179 TGAACAGCAAAATTTCAGGAAACTAAG 59.294 33.333 0.00 0.00 40.21 2.18
913 924 3.594134 CAGAGGTCAGATCCTGAAACAC 58.406 50.000 0.00 0.00 42.46 3.32
948 964 3.997021 CCGTTCATATATGCTTCCTCACC 59.003 47.826 7.92 0.00 0.00 4.02
1071 1118 3.753434 CCGACGAGGCAGAGCACT 61.753 66.667 0.00 0.00 0.00 4.40
1485 1532 1.476007 AAGCCTGCTCCTTCACGTCT 61.476 55.000 0.00 0.00 0.00 4.18
1561 1608 4.680237 CTTGGTGTCAGCCGGCGA 62.680 66.667 23.20 18.73 0.00 5.54
1635 1682 1.340248 TCGTCGAAGGTCTGCTTCTTT 59.660 47.619 0.00 0.00 0.00 2.52
1763 1810 1.228337 TCCTCCGTCTTGTCCGTGA 60.228 57.895 0.00 0.00 0.00 4.35
1885 1932 2.286523 CCTGCCCGTTCTCCAGAGT 61.287 63.158 0.00 0.00 0.00 3.24
1891 1938 4.821589 CTCCGCCTGCCCGTTCTC 62.822 72.222 0.00 0.00 0.00 2.87
2013 2063 0.593128 TGCTTGCCGCTTTCTTCTTC 59.407 50.000 0.00 0.00 40.11 2.87
2014 2064 1.000938 CTTGCTTGCCGCTTTCTTCTT 60.001 47.619 0.00 0.00 40.11 2.52
2015 2065 0.595095 CTTGCTTGCCGCTTTCTTCT 59.405 50.000 0.00 0.00 40.11 2.85
2237 2293 2.434336 CGGATGGGATCTTTGTAGGACA 59.566 50.000 0.00 0.00 0.00 4.02
3461 3726 2.116238 GTAGTAGAGGGTGGAATGCCA 58.884 52.381 0.00 0.00 43.47 4.92
3486 3755 1.143838 CCAATGGCGATCAGTCCGA 59.856 57.895 0.00 0.00 0.00 4.55
3490 3759 0.904649 TCAGTCCAATGGCGATCAGT 59.095 50.000 0.00 0.00 0.00 3.41
3492 3761 1.538849 CGATCAGTCCAATGGCGATCA 60.539 52.381 19.11 0.00 33.60 2.92
3493 3762 1.143305 CGATCAGTCCAATGGCGATC 58.857 55.000 12.98 12.98 0.00 3.69
3494 3763 0.882042 GCGATCAGTCCAATGGCGAT 60.882 55.000 0.00 0.00 0.00 4.58
3495 3764 1.521457 GCGATCAGTCCAATGGCGA 60.521 57.895 0.00 0.00 0.00 5.54
3496 3765 2.537560 GGCGATCAGTCCAATGGCG 61.538 63.158 0.00 0.00 0.00 5.69
3497 3766 0.820891 ATGGCGATCAGTCCAATGGC 60.821 55.000 0.00 0.00 35.75 4.40
3498 3767 1.335810 CAATGGCGATCAGTCCAATGG 59.664 52.381 0.00 0.00 35.75 3.16
3499 3768 1.335810 CCAATGGCGATCAGTCCAATG 59.664 52.381 2.92 5.01 35.75 2.82
3500 3769 1.212688 TCCAATGGCGATCAGTCCAAT 59.787 47.619 0.00 0.00 35.75 3.16
3501 3770 0.617935 TCCAATGGCGATCAGTCCAA 59.382 50.000 0.00 0.00 35.75 3.53
3502 3771 0.107703 GTCCAATGGCGATCAGTCCA 60.108 55.000 0.00 0.00 36.70 4.02
3538 3811 1.700739 CCTTACACCTACCACACCCAA 59.299 52.381 0.00 0.00 0.00 4.12
3794 4071 3.181485 GCTAGCTGTTAACTCCGATCACT 60.181 47.826 7.70 0.00 0.00 3.41
3836 4113 5.579904 CCTATATCAGCCAATCAATCAGACG 59.420 44.000 0.00 0.00 0.00 4.18
3914 4191 4.682334 TAGACACCGGCCGACCCA 62.682 66.667 30.73 3.00 0.00 4.51
3915 4192 2.248086 AATTAGACACCGGCCGACCC 62.248 60.000 30.73 12.74 0.00 4.46
3916 4193 0.461135 TAATTAGACACCGGCCGACC 59.539 55.000 30.73 12.36 0.00 4.79
4072 4352 8.982723 GGGGATCAATCTCTTAGCTATGTATTA 58.017 37.037 6.53 0.00 0.00 0.98
4156 4439 3.720494 TGGAGAGGTGCGCCAATA 58.280 55.556 20.59 0.00 43.96 1.90
4180 4463 7.218228 TCTATTACCGAAAGTGAAGTGTACA 57.782 36.000 0.00 0.00 0.00 2.90
4183 4466 7.876068 TGAAATCTATTACCGAAAGTGAAGTGT 59.124 33.333 0.00 0.00 0.00 3.55
4236 4520 9.092876 GAGACTTGGTTAAATCTCAATAGACTG 57.907 37.037 0.00 0.00 37.99 3.51
4264 4548 3.331150 CACAAAATGCTGCATGGTTGAT 58.669 40.909 30.52 18.90 0.00 2.57
4283 4567 4.752661 AAAATGTTGCAAATGATGGCAC 57.247 36.364 0.00 0.00 40.23 5.01
4312 4596 0.249120 AAGATGGATGTTGCGACCGA 59.751 50.000 0.45 0.00 0.00 4.69
4333 4617 2.026822 AGGGAAGACATGCTACAACCAG 60.027 50.000 0.00 0.00 0.00 4.00
4348 4632 2.749621 GTGCTACAACCAATGAGGGAAG 59.250 50.000 0.00 0.00 43.89 3.46
4349 4633 2.790433 GTGCTACAACCAATGAGGGAA 58.210 47.619 0.00 0.00 43.89 3.97
4366 4650 2.452813 AACCGATGCGATGACGTGC 61.453 57.895 0.00 0.00 41.98 5.34
4367 4651 1.344837 CAACCGATGCGATGACGTG 59.655 57.895 0.00 0.00 41.98 4.49
4368 4652 2.452813 GCAACCGATGCGATGACGT 61.453 57.895 0.00 0.00 46.87 4.34
4379 4663 3.567585 TCAATGAAAGATGTTGCAACCGA 59.432 39.130 26.14 9.67 0.00 4.69
4381 4665 3.670055 CGTCAATGAAAGATGTTGCAACC 59.330 43.478 26.14 12.17 0.00 3.77
4382 4666 3.670055 CCGTCAATGAAAGATGTTGCAAC 59.330 43.478 22.83 22.83 0.00 4.17
4383 4667 3.317711 ACCGTCAATGAAAGATGTTGCAA 59.682 39.130 0.00 0.00 0.00 4.08
4412 4696 5.302360 TGCTACAACCGTTCTAACTGAAAT 58.698 37.500 0.00 0.00 36.30 2.17
4496 4780 1.890876 TTTGCTACAATCTGCACGGT 58.109 45.000 0.00 0.00 39.05 4.83
4522 4806 4.447583 CTCAATCGAGTGACGTGAGTGTG 61.448 52.174 12.21 0.00 39.01 3.82
4525 4809 2.095668 GTCTCAATCGAGTGACGTGAGT 60.096 50.000 12.21 0.00 42.09 3.41
4543 4827 5.181622 AGTCGACTGAGATTTAACGAAGTCT 59.818 40.000 19.30 0.00 45.00 3.24
4620 4906 1.702957 TGAAAGGTGAAGGGTTCGGAT 59.297 47.619 0.00 0.00 0.00 4.18
4652 5104 0.324614 TGTGATCGGTGGCATGAAGT 59.675 50.000 0.00 0.00 0.00 3.01
4655 5107 2.127271 AATTGTGATCGGTGGCATGA 57.873 45.000 0.00 0.00 0.00 3.07
4714 5166 4.360951 AACTCATAAAAGACCCGTTCCA 57.639 40.909 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.