Multiple sequence alignment - TraesCS4A01G219900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G219900 chr4A 100.000 5574 0 0 1 5574 522152951 522158524 0.000000e+00 10294.0
1 TraesCS4A01G219900 chr4D 90.835 4790 237 75 306 5014 69846352 69851020 0.000000e+00 6228.0
2 TraesCS4A01G219900 chr4D 95.902 244 9 1 5281 5523 69932028 69932271 1.460000e-105 394.0
3 TraesCS4A01G219900 chr4D 88.764 267 12 3 5028 5276 69931705 69931971 1.510000e-80 311.0
4 TraesCS4A01G219900 chr4D 88.889 99 8 1 224 322 69846237 69846332 9.810000e-23 119.0
5 TraesCS4A01G219900 chr4B 93.562 2594 104 19 2429 4990 103525920 103528482 0.000000e+00 3807.0
6 TraesCS4A01G219900 chr4B 85.264 1364 111 40 68 1396 103523506 103524814 0.000000e+00 1323.0
7 TraesCS4A01G219900 chr4B 88.566 516 40 8 1764 2275 103525257 103525757 4.770000e-170 608.0
8 TraesCS4A01G219900 chr4B 93.258 356 22 2 1410 1764 103524855 103525209 1.780000e-144 523.0
9 TraesCS4A01G219900 chr4B 94.422 251 12 1 5028 5276 103528956 103529206 8.760000e-103 385.0
10 TraesCS4A01G219900 chr4B 95.146 206 8 1 5318 5523 103544736 103544939 1.940000e-84 324.0
11 TraesCS4A01G219900 chr4B 94.660 206 9 1 5318 5523 103537867 103538070 9.010000e-83 318.0
12 TraesCS4A01G219900 chr4B 100.000 130 0 0 2267 2396 103525795 103525924 2.010000e-59 241.0
13 TraesCS4A01G219900 chr1B 89.024 82 9 0 85 166 119680041 119679960 9.880000e-18 102.0
14 TraesCS4A01G219900 chr1B 85.484 62 9 0 88 149 512879715 512879654 1.300000e-06 65.8
15 TraesCS4A01G219900 chr1B 79.121 91 15 4 76 164 658524302 658524214 6.030000e-05 60.2
16 TraesCS4A01G219900 chr7A 86.667 90 12 0 76 165 425789570 425789659 3.550000e-17 100.0
17 TraesCS4A01G219900 chr5B 87.059 85 11 0 85 169 471403163 471403079 4.600000e-16 97.1
18 TraesCS4A01G219900 chr5B 84.615 91 14 0 76 166 629690136 629690046 2.140000e-14 91.6
19 TraesCS4A01G219900 chr2B 87.654 81 10 0 85 165 477006153 477006073 1.650000e-15 95.3
20 TraesCS4A01G219900 chr5D 95.122 41 2 0 94 134 240854802 240854762 1.300000e-06 65.8
21 TraesCS4A01G219900 chr7B 91.111 45 4 0 100 144 560501854 560501810 1.680000e-05 62.1
22 TraesCS4A01G219900 chr3D 91.111 45 4 0 85 129 608177015 608176971 1.680000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G219900 chr4A 522152951 522158524 5573 False 10294.000000 10294 100.000 1 5574 1 chr4A.!!$F1 5573
1 TraesCS4A01G219900 chr4D 69846237 69851020 4783 False 3173.500000 6228 89.862 224 5014 2 chr4D.!!$F1 4790
2 TraesCS4A01G219900 chr4D 69931705 69932271 566 False 352.500000 394 92.333 5028 5523 2 chr4D.!!$F2 495
3 TraesCS4A01G219900 chr4B 103523506 103529206 5700 False 1147.833333 3807 92.512 68 5276 6 chr4B.!!$F3 5208

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
465 515 0.032815 TCGCACCATTCACTCGTTCA 59.967 50.0 0.00 0.00 0.00 3.18 F
1344 1421 0.109319 GCGTGATTGCATCCGGTTTT 60.109 50.0 0.00 0.00 34.15 2.43 F
1420 1530 0.038159 CGAGTTCCTTCGCCTTGACT 60.038 55.0 0.00 0.00 33.39 3.41 F
1651 1763 0.321996 GTCCCTTTCCTCGCAACTCT 59.678 55.0 0.00 0.00 0.00 3.24 F
2046 2208 0.803117 TCACAACACGTTTTTGCCGA 59.197 45.0 6.58 2.08 0.00 5.54 F
3065 3298 1.096416 AGCTGCTACCAGAGTACGTC 58.904 55.0 0.00 0.00 41.77 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1408 1492 1.071605 CGGAGAAAGTCAAGGCGAAG 58.928 55.000 0.00 0.0 0.00 3.79 R
2498 2730 1.547372 GCACCATCAGGCAACAGATTT 59.453 47.619 0.00 0.0 40.33 2.17 R
2943 3176 1.889829 AGGCTCGATGGATAGCACTAC 59.110 52.381 0.00 0.0 40.61 2.73 R
3201 3437 3.202906 ACACGCGCAATATTAGGAACAT 58.797 40.909 5.73 0.0 0.00 2.71 R
3670 3907 1.570857 ATTGCAACGGATCCTCCCCA 61.571 55.000 10.75 0.0 31.13 4.96 R
4646 4917 0.183492 AAGTGCACCACATCACCAGT 59.817 50.000 14.63 0.0 36.74 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.443925 CTCTGCGCCTCTCCACGA 61.444 66.667 4.18 0.00 0.00 4.35
18 19 3.408501 CTCTGCGCCTCTCCACGAG 62.409 68.421 4.18 0.00 39.57 4.18
19 20 3.753434 CTGCGCCTCTCCACGAGT 61.753 66.667 4.18 0.00 38.11 4.18
20 21 3.691744 CTGCGCCTCTCCACGAGTC 62.692 68.421 4.18 0.00 38.11 3.36
21 22 4.838486 GCGCCTCTCCACGAGTCG 62.838 72.222 11.85 11.85 38.11 4.18
22 23 4.180946 CGCCTCTCCACGAGTCGG 62.181 72.222 18.30 5.77 38.11 4.79
23 24 4.500116 GCCTCTCCACGAGTCGGC 62.500 72.222 18.30 4.65 38.92 5.54
24 25 3.062466 CCTCTCCACGAGTCGGCA 61.062 66.667 18.30 0.00 38.11 5.69
25 26 2.636412 CCTCTCCACGAGTCGGCAA 61.636 63.158 18.30 0.01 38.11 4.52
26 27 1.289066 CTCTCCACGAGTCGGCAAA 59.711 57.895 18.30 0.00 34.95 3.68
27 28 0.319555 CTCTCCACGAGTCGGCAAAA 60.320 55.000 18.30 0.00 34.95 2.44
28 29 0.319555 TCTCCACGAGTCGGCAAAAG 60.320 55.000 18.30 6.88 0.00 2.27
29 30 1.291877 CTCCACGAGTCGGCAAAAGG 61.292 60.000 18.30 8.54 0.00 3.11
30 31 1.301401 CCACGAGTCGGCAAAAGGA 60.301 57.895 18.30 0.00 0.00 3.36
31 32 1.566018 CCACGAGTCGGCAAAAGGAC 61.566 60.000 18.30 0.00 0.00 3.85
32 33 1.301479 ACGAGTCGGCAAAAGGACC 60.301 57.895 18.30 0.00 33.66 4.46
33 34 2.033194 CGAGTCGGCAAAAGGACCC 61.033 63.158 4.10 0.00 33.66 4.46
34 35 1.375326 GAGTCGGCAAAAGGACCCT 59.625 57.895 0.00 0.00 33.66 4.34
35 36 0.673956 GAGTCGGCAAAAGGACCCTC 60.674 60.000 0.00 0.00 33.66 4.30
36 37 1.128188 AGTCGGCAAAAGGACCCTCT 61.128 55.000 0.00 0.00 33.66 3.69
37 38 0.611714 GTCGGCAAAAGGACCCTCTA 59.388 55.000 0.00 0.00 0.00 2.43
38 39 1.209747 GTCGGCAAAAGGACCCTCTAT 59.790 52.381 0.00 0.00 0.00 1.98
39 40 1.209504 TCGGCAAAAGGACCCTCTATG 59.790 52.381 0.00 0.00 0.00 2.23
40 41 1.065418 CGGCAAAAGGACCCTCTATGT 60.065 52.381 0.00 0.00 0.00 2.29
41 42 2.644676 GGCAAAAGGACCCTCTATGTC 58.355 52.381 0.00 0.00 0.00 3.06
51 52 5.461032 GACCCTCTATGTCCTTCTACATG 57.539 47.826 0.00 0.00 40.29 3.21
52 53 3.643792 ACCCTCTATGTCCTTCTACATGC 59.356 47.826 0.00 0.00 40.29 4.06
53 54 3.305676 CCCTCTATGTCCTTCTACATGCG 60.306 52.174 0.00 0.00 40.29 4.73
54 55 3.319405 CCTCTATGTCCTTCTACATGCGT 59.681 47.826 0.00 0.00 40.29 5.24
55 56 4.294232 CTCTATGTCCTTCTACATGCGTG 58.706 47.826 3.82 3.82 40.29 5.34
56 57 1.656652 ATGTCCTTCTACATGCGTGC 58.343 50.000 5.64 0.00 38.65 5.34
57 58 0.320050 TGTCCTTCTACATGCGTGCA 59.680 50.000 5.64 0.00 0.00 4.57
58 59 1.270571 TGTCCTTCTACATGCGTGCAA 60.271 47.619 5.64 0.00 0.00 4.08
59 60 1.128692 GTCCTTCTACATGCGTGCAAC 59.871 52.381 5.64 0.00 0.00 4.17
78 79 6.474102 GTGCAACGACATTCTCCTTTTTAAAA 59.526 34.615 0.00 0.00 0.00 1.52
86 87 9.756461 GACATTCTCCTTTTTAAAATACTCGTC 57.244 33.333 0.55 0.00 0.00 4.20
197 206 2.717639 AGTATGTCAACTCATGGCCC 57.282 50.000 0.00 0.00 30.45 5.80
201 210 1.379044 GTCAACTCATGGCCCTGGG 60.379 63.158 8.86 8.86 0.00 4.45
211 220 1.227383 GGCCCTGGGTGTATCTTGG 59.773 63.158 15.56 0.00 0.00 3.61
213 222 0.623723 GCCCTGGGTGTATCTTGGAA 59.376 55.000 15.56 0.00 0.00 3.53
269 281 5.048504 TGTTTCTTTAAGAGCAAGATGGCTG 60.049 40.000 0.00 0.00 45.99 4.85
270 282 3.012518 TCTTTAAGAGCAAGATGGCTGC 58.987 45.455 0.00 0.00 45.99 5.25
271 283 2.795231 TTAAGAGCAAGATGGCTGCT 57.205 45.000 0.00 0.00 45.99 4.24
272 284 2.795231 TAAGAGCAAGATGGCTGCTT 57.205 45.000 0.00 0.00 45.99 3.91
273 285 2.795231 AAGAGCAAGATGGCTGCTTA 57.205 45.000 0.00 0.00 45.99 3.09
274 286 2.795231 AGAGCAAGATGGCTGCTTAA 57.205 45.000 0.00 0.00 45.99 1.85
275 287 2.641305 AGAGCAAGATGGCTGCTTAAG 58.359 47.619 0.00 0.00 45.99 1.85
276 288 2.026449 AGAGCAAGATGGCTGCTTAAGT 60.026 45.455 4.02 0.00 45.99 2.24
278 290 3.941483 GAGCAAGATGGCTGCTTAAGTTA 59.059 43.478 4.02 0.00 45.99 2.24
279 291 3.944015 AGCAAGATGGCTGCTTAAGTTAG 59.056 43.478 4.02 4.59 43.89 2.34
280 292 3.691609 GCAAGATGGCTGCTTAAGTTAGT 59.308 43.478 4.02 0.00 0.00 2.24
292 304 6.561614 TGCTTAAGTTAGTCTGATCCGTAAG 58.438 40.000 4.02 0.00 0.00 2.34
298 310 3.678056 AGTCTGATCCGTAAGCAACAA 57.322 42.857 0.00 0.00 0.00 2.83
309 321 1.148310 AAGCAACAACCGATCGAGTG 58.852 50.000 18.66 15.94 0.00 3.51
372 422 7.978099 ATCCTTTTATGTTGGATTAAGCCTT 57.022 32.000 11.74 0.00 37.29 4.35
394 444 1.813513 CAGAATGGGAGAACGCTTGT 58.186 50.000 0.00 0.00 0.00 3.16
395 445 1.466167 CAGAATGGGAGAACGCTTGTG 59.534 52.381 0.00 0.00 0.00 3.33
396 446 1.072331 AGAATGGGAGAACGCTTGTGT 59.928 47.619 0.00 0.00 0.00 3.72
397 447 1.464997 GAATGGGAGAACGCTTGTGTC 59.535 52.381 0.00 0.00 0.00 3.67
398 448 0.670546 ATGGGAGAACGCTTGTGTCG 60.671 55.000 0.00 0.00 0.00 4.35
399 449 2.027625 GGGAGAACGCTTGTGTCGG 61.028 63.158 0.00 0.00 0.00 4.79
400 450 1.300697 GGAGAACGCTTGTGTCGGT 60.301 57.895 0.00 0.00 0.00 4.69
402 452 1.403780 GGAGAACGCTTGTGTCGGTAT 60.404 52.381 0.00 0.00 0.00 2.73
403 453 2.334838 GAGAACGCTTGTGTCGGTATT 58.665 47.619 0.00 0.00 0.00 1.89
404 454 2.066262 AGAACGCTTGTGTCGGTATTG 58.934 47.619 0.00 0.00 0.00 1.90
406 456 2.380084 ACGCTTGTGTCGGTATTGAT 57.620 45.000 0.00 0.00 0.00 2.57
407 457 1.999735 ACGCTTGTGTCGGTATTGATG 59.000 47.619 0.00 0.00 0.00 3.07
408 458 1.999735 CGCTTGTGTCGGTATTGATGT 59.000 47.619 0.00 0.00 0.00 3.06
409 459 2.415168 CGCTTGTGTCGGTATTGATGTT 59.585 45.455 0.00 0.00 0.00 2.71
457 507 0.179059 ACGCCATATCGCACCATTCA 60.179 50.000 0.00 0.00 0.00 2.57
458 508 0.235665 CGCCATATCGCACCATTCAC 59.764 55.000 0.00 0.00 0.00 3.18
459 509 1.597742 GCCATATCGCACCATTCACT 58.402 50.000 0.00 0.00 0.00 3.41
460 510 1.532868 GCCATATCGCACCATTCACTC 59.467 52.381 0.00 0.00 0.00 3.51
461 511 1.794701 CCATATCGCACCATTCACTCG 59.205 52.381 0.00 0.00 0.00 4.18
462 512 2.473816 CATATCGCACCATTCACTCGT 58.526 47.619 0.00 0.00 0.00 4.18
463 513 2.665649 TATCGCACCATTCACTCGTT 57.334 45.000 0.00 0.00 0.00 3.85
464 514 1.359848 ATCGCACCATTCACTCGTTC 58.640 50.000 0.00 0.00 0.00 3.95
465 515 0.032815 TCGCACCATTCACTCGTTCA 59.967 50.000 0.00 0.00 0.00 3.18
482 532 4.194720 AGCCGCGTGGATCGACTC 62.195 66.667 21.76 0.00 42.86 3.36
512 562 4.318831 GGTGCACGTAGTCAAAGAAAGAAG 60.319 45.833 11.45 0.00 41.61 2.85
521 571 4.013050 GTCAAAGAAAGAAGGAGATGGGG 58.987 47.826 0.00 0.00 0.00 4.96
522 572 3.657727 TCAAAGAAAGAAGGAGATGGGGT 59.342 43.478 0.00 0.00 0.00 4.95
523 573 4.849810 TCAAAGAAAGAAGGAGATGGGGTA 59.150 41.667 0.00 0.00 0.00 3.69
524 574 4.846168 AAGAAAGAAGGAGATGGGGTAC 57.154 45.455 0.00 0.00 0.00 3.34
525 575 2.766828 AGAAAGAAGGAGATGGGGTACG 59.233 50.000 0.00 0.00 0.00 3.67
526 576 2.544844 AAGAAGGAGATGGGGTACGA 57.455 50.000 0.00 0.00 0.00 3.43
527 577 2.074729 AGAAGGAGATGGGGTACGAG 57.925 55.000 0.00 0.00 0.00 4.18
528 578 1.569548 AGAAGGAGATGGGGTACGAGA 59.430 52.381 0.00 0.00 0.00 4.04
529 579 2.178106 AGAAGGAGATGGGGTACGAGAT 59.822 50.000 0.00 0.00 0.00 2.75
555 605 0.384725 CGAGCCAACAAAACTCGCAG 60.385 55.000 0.00 0.00 45.67 5.18
612 662 1.517257 CGATCCTGTCTGCGTCACC 60.517 63.158 0.00 0.00 0.00 4.02
646 696 9.434275 TTCCAACCAACAGATTAGATATCTAGA 57.566 33.333 12.16 0.00 0.00 2.43
754 811 9.286170 GGTTGTATCTCCCTTTTATTATCTTCC 57.714 37.037 0.00 0.00 0.00 3.46
776 833 6.173339 TCCAATTCTAATAATCTGGCGATCC 58.827 40.000 0.00 0.00 0.00 3.36
778 835 6.093219 CCAATTCTAATAATCTGGCGATCCTG 59.907 42.308 0.00 0.00 0.00 3.86
819 876 6.374417 AGAAACCAATCAGGGCGTATATAT 57.626 37.500 0.00 0.00 43.89 0.86
820 877 7.490657 AGAAACCAATCAGGGCGTATATATA 57.509 36.000 0.00 0.00 43.89 0.86
821 878 7.556844 AGAAACCAATCAGGGCGTATATATAG 58.443 38.462 0.00 0.00 43.89 1.31
822 879 5.871396 ACCAATCAGGGCGTATATATAGG 57.129 43.478 7.88 7.88 43.89 2.57
823 880 4.654262 ACCAATCAGGGCGTATATATAGGG 59.346 45.833 13.00 1.46 43.89 3.53
824 881 4.899457 CCAATCAGGGCGTATATATAGGGA 59.101 45.833 13.00 3.86 0.00 4.20
847 904 0.256177 GGAAGGGTCCAACTCCATCC 59.744 60.000 0.00 0.00 44.26 3.51
862 919 1.531840 ATCCCCGTCTCCATCTCCG 60.532 63.158 0.00 0.00 0.00 4.63
872 935 2.435693 CCATCTCCGTCCCTGGGTC 61.436 68.421 13.56 6.22 0.00 4.46
899 962 0.916358 CACTTCTCTCCCACCCCCAT 60.916 60.000 0.00 0.00 0.00 4.00
901 964 0.327000 CTTCTCTCCCACCCCCATCT 60.327 60.000 0.00 0.00 0.00 2.90
902 965 0.326618 TTCTCTCCCACCCCCATCTC 60.327 60.000 0.00 0.00 0.00 2.75
903 966 1.231751 TCTCTCCCACCCCCATCTCT 61.232 60.000 0.00 0.00 0.00 3.10
920 993 1.690985 CTCCCTCCCTCCCCTGTTC 60.691 68.421 0.00 0.00 0.00 3.18
951 1024 3.755628 CATTGCCGCCTGCTGCTT 61.756 61.111 7.07 0.00 42.00 3.91
952 1025 3.446570 ATTGCCGCCTGCTGCTTC 61.447 61.111 7.07 0.00 42.00 3.86
953 1026 4.953010 TTGCCGCCTGCTGCTTCA 62.953 61.111 7.07 0.00 42.00 3.02
1213 1286 2.279120 GTCGCAGCTCCATCTCCG 60.279 66.667 0.00 0.00 0.00 4.63
1249 1326 2.703007 GTTGACTCCAGCAGGATAGGAT 59.297 50.000 0.00 0.00 44.70 3.24
1275 1352 2.943036 TGGGTTGGTAAGAACTGGAC 57.057 50.000 0.00 0.00 0.00 4.02
1276 1353 2.414612 TGGGTTGGTAAGAACTGGACT 58.585 47.619 0.00 0.00 0.00 3.85
1303 1380 3.159472 TCCAGCTCTGTTTGCATGATTT 58.841 40.909 0.00 0.00 0.00 2.17
1344 1421 0.109319 GCGTGATTGCATCCGGTTTT 60.109 50.000 0.00 0.00 34.15 2.43
1376 1460 6.320672 CCATGGAAGTAAATTTGATGAGAGCT 59.679 38.462 5.56 0.00 0.00 4.09
1408 1492 2.630592 GATCAGTCGCCCCGAGTTCC 62.631 65.000 0.00 0.00 37.44 3.62
1419 1529 1.014564 CCGAGTTCCTTCGCCTTGAC 61.015 60.000 0.00 0.00 39.19 3.18
1420 1530 0.038159 CGAGTTCCTTCGCCTTGACT 60.038 55.000 0.00 0.00 33.39 3.41
1442 1552 6.334202 ACTTTCTCCGTATCTGATCTTCAAC 58.666 40.000 0.00 0.00 0.00 3.18
1480 1590 6.001460 TCTTCCCATTAATTGTTCGTCTTGT 58.999 36.000 0.00 0.00 0.00 3.16
1551 1663 2.125147 TGCTCCTCGGCCGAATTG 60.125 61.111 30.53 21.07 0.00 2.32
1651 1763 0.321996 GTCCCTTTCCTCGCAACTCT 59.678 55.000 0.00 0.00 0.00 3.24
1745 1858 1.207593 CCTCGCTTTGTTTGCTCCG 59.792 57.895 0.00 0.00 0.00 4.63
1747 1860 2.187599 CTCGCTTTGTTTGCTCCGGG 62.188 60.000 0.00 0.00 0.00 5.73
1755 1868 3.234630 TTTGCTCCGGGGTCAGACG 62.235 63.158 1.62 0.00 0.00 4.18
1780 1942 3.248363 GTCTGCAAATTTTCAGTTTGGGC 59.752 43.478 15.93 1.65 37.12 5.36
1810 1972 3.976942 GCAACTTGCATCAGTTTGTACTG 59.023 43.478 8.97 0.00 46.75 2.74
1812 1974 7.940571 GCAACTTGCATCAGTTTGTACTGCA 62.941 44.000 8.97 0.02 45.91 4.41
1820 1982 4.012319 CAGTTTGTACTGCATGCTCATC 57.988 45.455 20.33 7.80 44.81 2.92
1822 1984 4.155462 CAGTTTGTACTGCATGCTCATCTT 59.845 41.667 20.33 0.00 44.81 2.40
1825 1987 5.710513 TTGTACTGCATGCTCATCTTTTT 57.289 34.783 20.33 0.00 0.00 1.94
1827 1989 3.863142 ACTGCATGCTCATCTTTTTCC 57.137 42.857 20.33 0.00 0.00 3.13
1828 1990 3.428532 ACTGCATGCTCATCTTTTTCCT 58.571 40.909 20.33 0.00 0.00 3.36
1829 1991 3.442977 ACTGCATGCTCATCTTTTTCCTC 59.557 43.478 20.33 0.00 0.00 3.71
1830 1992 3.693807 TGCATGCTCATCTTTTTCCTCT 58.306 40.909 20.33 0.00 0.00 3.69
1831 1993 4.084287 TGCATGCTCATCTTTTTCCTCTT 58.916 39.130 20.33 0.00 0.00 2.85
1832 1994 4.525487 TGCATGCTCATCTTTTTCCTCTTT 59.475 37.500 20.33 0.00 0.00 2.52
1833 1995 5.011329 TGCATGCTCATCTTTTTCCTCTTTT 59.989 36.000 20.33 0.00 0.00 2.27
1834 1996 5.930569 GCATGCTCATCTTTTTCCTCTTTTT 59.069 36.000 11.37 0.00 0.00 1.94
1835 1997 6.128634 GCATGCTCATCTTTTTCCTCTTTTTG 60.129 38.462 11.37 0.00 0.00 2.44
1836 1998 5.291971 TGCTCATCTTTTTCCTCTTTTTGC 58.708 37.500 0.00 0.00 0.00 3.68
1837 1999 4.383948 GCTCATCTTTTTCCTCTTTTTGCG 59.616 41.667 0.00 0.00 0.00 4.85
1838 2000 5.762045 CTCATCTTTTTCCTCTTTTTGCGA 58.238 37.500 0.00 0.00 0.00 5.10
1839 2001 6.142818 TCATCTTTTTCCTCTTTTTGCGAA 57.857 33.333 0.00 0.00 0.00 4.70
1840 2002 6.568869 TCATCTTTTTCCTCTTTTTGCGAAA 58.431 32.000 0.00 0.00 0.00 3.46
1841 2003 7.038659 TCATCTTTTTCCTCTTTTTGCGAAAA 58.961 30.769 11.37 11.37 33.58 2.29
1842 2004 7.547370 TCATCTTTTTCCTCTTTTTGCGAAAAA 59.453 29.630 12.84 0.00 40.21 1.94
1867 2029 7.865706 AGGCTTTCGTTGAAGTATCATATTT 57.134 32.000 0.00 0.00 34.96 1.40
1871 2033 7.640240 GCTTTCGTTGAAGTATCATATTTGTCC 59.360 37.037 0.00 0.00 34.96 4.02
1926 2088 4.932200 GTCTGTAGTTACTGAAGCATTGCT 59.068 41.667 5.03 5.03 42.56 3.91
1927 2089 4.931601 TCTGTAGTTACTGAAGCATTGCTG 59.068 41.667 12.82 2.20 39.62 4.41
1958 2120 2.436173 AGCTAGGACTAGGAAATGCCAC 59.564 50.000 8.33 0.00 40.02 5.01
1991 2153 7.894376 AATTTGGTGATTGCAATCTGTAAAG 57.106 32.000 33.23 0.00 36.39 1.85
2018 2180 7.150783 ACAGAAATAAATGAACAGAGAAGCC 57.849 36.000 0.00 0.00 0.00 4.35
2041 2203 4.489810 TGATTGCTTCACAACACGTTTTT 58.510 34.783 0.00 0.00 42.27 1.94
2043 2205 1.989165 TGCTTCACAACACGTTTTTGC 59.011 42.857 6.58 0.00 0.00 3.68
2044 2206 1.323235 GCTTCACAACACGTTTTTGCC 59.677 47.619 6.58 0.00 0.00 4.52
2045 2207 1.581602 CTTCACAACACGTTTTTGCCG 59.418 47.619 6.58 0.00 0.00 5.69
2046 2208 0.803117 TCACAACACGTTTTTGCCGA 59.197 45.000 6.58 2.08 0.00 5.54
2047 2209 1.402259 TCACAACACGTTTTTGCCGAT 59.598 42.857 6.58 0.00 0.00 4.18
2204 2389 6.710597 TCTCCACATACTACTGATTACACC 57.289 41.667 0.00 0.00 0.00 4.16
2205 2390 6.432581 TCTCCACATACTACTGATTACACCT 58.567 40.000 0.00 0.00 0.00 4.00
2206 2391 6.895756 TCTCCACATACTACTGATTACACCTT 59.104 38.462 0.00 0.00 0.00 3.50
2265 2451 6.002082 GGGATGTGTGACCTTTACTACTTTT 58.998 40.000 0.00 0.00 0.00 2.27
2404 2636 5.733226 TCAATGGCATTGAACATAGTACG 57.267 39.130 34.19 9.54 45.57 3.67
2405 2637 5.182487 TCAATGGCATTGAACATAGTACGT 58.818 37.500 34.19 0.00 45.57 3.57
2406 2638 6.342111 TCAATGGCATTGAACATAGTACGTA 58.658 36.000 34.19 12.01 45.57 3.57
2407 2639 6.256975 TCAATGGCATTGAACATAGTACGTAC 59.743 38.462 34.19 18.10 45.57 3.67
2408 2640 5.333299 TGGCATTGAACATAGTACGTACT 57.667 39.130 29.62 29.62 40.24 2.73
2409 2641 5.106442 TGGCATTGAACATAGTACGTACTG 58.894 41.667 33.23 22.47 37.10 2.74
2410 2642 5.107133 GGCATTGAACATAGTACGTACTGT 58.893 41.667 33.23 26.05 37.10 3.55
2411 2643 5.005394 GGCATTGAACATAGTACGTACTGTG 59.995 44.000 36.37 36.37 46.71 3.66
2412 2644 5.500290 GCATTGAACATAGTACGTACTGTGC 60.500 44.000 37.33 27.06 45.69 4.57
2413 2645 5.381174 TTGAACATAGTACGTACTGTGCT 57.619 39.130 37.33 30.73 45.69 4.40
2484 2716 3.998341 GAGAGGCTACGAGGATACACTAG 59.002 52.174 0.00 0.00 41.41 2.57
2525 2757 2.673200 GCCTGATGGTGCTGGAGGA 61.673 63.158 0.00 0.00 35.27 3.71
2609 2841 4.050553 TGTTTCGTAGTTGGTACCTTTCG 58.949 43.478 14.36 10.67 0.00 3.46
2663 2895 4.739046 ATGCTCTAACGCAATCTTATGC 57.261 40.909 0.00 0.00 44.06 3.14
2679 2911 5.324409 TCTTATGCCACAAGTCCTGATTTT 58.676 37.500 0.00 0.00 0.00 1.82
2680 2912 5.774690 TCTTATGCCACAAGTCCTGATTTTT 59.225 36.000 0.00 0.00 0.00 1.94
2681 2913 6.945435 TCTTATGCCACAAGTCCTGATTTTTA 59.055 34.615 0.00 0.00 0.00 1.52
2750 2983 3.051081 TGGCACCATTACATTTTTGGC 57.949 42.857 0.00 0.00 33.66 4.52
2904 3137 6.581388 TTCCTTGTTAGATTCCTGGATGAT 57.419 37.500 0.00 0.00 0.00 2.45
2907 3140 3.995199 TGTTAGATTCCTGGATGATCGC 58.005 45.455 0.00 0.00 0.00 4.58
2943 3176 7.923344 AGATGACTAATAATCTCACCTTCGTTG 59.077 37.037 0.00 0.00 0.00 4.10
2963 3196 1.889829 GTAGTGCTATCCATCGAGCCT 59.110 52.381 0.00 0.00 37.94 4.58
3065 3298 1.096416 AGCTGCTACCAGAGTACGTC 58.904 55.000 0.00 0.00 41.77 4.34
3123 3356 3.248602 CACTGAAACAGGTGCACTCTTAC 59.751 47.826 17.98 0.00 35.51 2.34
3219 3455 5.337219 TGTTATGTTCCTAATATTGCGCG 57.663 39.130 0.00 0.00 0.00 6.86
3220 3456 4.812091 TGTTATGTTCCTAATATTGCGCGT 59.188 37.500 8.43 0.00 0.00 6.01
3524 3760 6.238103 CCGATTACATCATAACGACAAAAGCT 60.238 38.462 0.00 0.00 0.00 3.74
3536 3772 4.330620 ACGACAAAAGCTTTCGTTACAGAA 59.669 37.500 16.80 0.00 43.23 3.02
3571 3807 8.179509 ACACTACTATTATAACTACCAGCCAG 57.820 38.462 0.00 0.00 0.00 4.85
3587 3823 2.091994 AGCCAGATAATTGCTTCTGCCT 60.092 45.455 8.56 2.40 38.41 4.75
3670 3907 7.518188 TGAAAAGAGTCTTGGAAAGGTTCTAT 58.482 34.615 6.06 0.00 46.24 1.98
3737 3974 7.381408 TGAGTATTAGCCATTTCGAACGATTAG 59.619 37.037 0.00 0.00 0.00 1.73
3872 4114 3.055458 AGTTGGGTTTTGGAAGGTGTTTG 60.055 43.478 0.00 0.00 0.00 2.93
4000 4244 5.280945 CCATGCTTCCAATTATAACGGTTG 58.719 41.667 3.07 0.00 0.00 3.77
4009 4253 5.526111 CCAATTATAACGGTTGGTACTCCTG 59.474 44.000 3.07 0.00 38.03 3.86
4010 4254 2.685850 ATAACGGTTGGTACTCCTGC 57.314 50.000 3.07 0.00 34.23 4.85
4011 4255 0.609662 TAACGGTTGGTACTCCTGCC 59.390 55.000 3.07 0.00 34.23 4.85
4012 4256 1.125711 AACGGTTGGTACTCCTGCCT 61.126 55.000 0.00 0.00 34.23 4.75
4013 4257 1.125711 ACGGTTGGTACTCCTGCCTT 61.126 55.000 0.00 0.00 34.23 4.35
4014 4258 0.673644 CGGTTGGTACTCCTGCCTTG 60.674 60.000 0.00 0.00 34.23 3.61
4017 4280 2.290960 GGTTGGTACTCCTGCCTTGATT 60.291 50.000 0.00 0.00 34.23 2.57
4024 4287 3.956744 ACTCCTGCCTTGATTTTCCTAC 58.043 45.455 0.00 0.00 0.00 3.18
4031 4294 3.445096 GCCTTGATTTTCCTACAGTGCAT 59.555 43.478 0.00 0.00 0.00 3.96
4032 4295 4.676196 GCCTTGATTTTCCTACAGTGCATG 60.676 45.833 0.00 0.00 0.00 4.06
4033 4296 4.701651 CCTTGATTTTCCTACAGTGCATGA 59.298 41.667 0.00 0.00 0.00 3.07
4041 4305 2.613725 CCTACAGTGCATGAAGTCTGCA 60.614 50.000 0.00 0.00 46.82 4.41
4064 4335 7.611467 TGCATGACAGTATTCAGAATTAAACCT 59.389 33.333 0.00 0.00 0.00 3.50
4081 4352 7.754851 TTAAACCTAACTCTGTTTGGATTCC 57.245 36.000 15.47 0.00 36.23 3.01
4084 4355 5.953571 ACCTAACTCTGTTTGGATTCCTTT 58.046 37.500 15.47 0.00 0.00 3.11
4085 4356 6.373759 ACCTAACTCTGTTTGGATTCCTTTT 58.626 36.000 15.47 0.00 0.00 2.27
4125 4396 4.996758 TCGACAAGATTGAAGAAAGCATCA 59.003 37.500 0.00 0.00 0.00 3.07
4139 4410 0.454957 GCATCACACACATCAACGCC 60.455 55.000 0.00 0.00 0.00 5.68
4286 4557 6.528321 TGAACTCTGTGAATCAATCTTCTGT 58.472 36.000 0.00 0.00 0.00 3.41
4426 4697 0.823356 GCTTCACCCACAGAAAGGCA 60.823 55.000 0.00 0.00 0.00 4.75
4471 4742 2.357760 GCGAACGCAAGGTACCCA 60.358 61.111 8.74 0.00 37.50 4.51
4489 4760 0.320374 CACCCTACACGGCAGAGAAA 59.680 55.000 0.00 0.00 0.00 2.52
4635 4906 4.019174 GGATTGTTCATGTTCATGAGGGT 58.981 43.478 13.89 4.40 31.46 4.34
4639 4910 4.011698 TGTTCATGTTCATGAGGGTGATG 58.988 43.478 13.89 0.00 31.46 3.07
4640 4911 4.012374 GTTCATGTTCATGAGGGTGATGT 58.988 43.478 13.89 0.00 31.46 3.06
4641 4912 3.613030 TCATGTTCATGAGGGTGATGTG 58.387 45.455 10.88 0.00 0.00 3.21
4642 4913 1.825090 TGTTCATGAGGGTGATGTGC 58.175 50.000 0.00 0.00 0.00 4.57
4643 4914 1.073603 TGTTCATGAGGGTGATGTGCA 59.926 47.619 0.00 0.00 0.00 4.57
4644 4915 1.741706 GTTCATGAGGGTGATGTGCAG 59.258 52.381 0.00 0.00 0.00 4.41
4645 4916 0.253894 TCATGAGGGTGATGTGCAGG 59.746 55.000 0.00 0.00 0.00 4.85
4646 4917 0.253894 CATGAGGGTGATGTGCAGGA 59.746 55.000 0.00 0.00 0.00 3.86
4647 4918 0.254178 ATGAGGGTGATGTGCAGGAC 59.746 55.000 0.00 0.00 0.00 3.85
4648 4919 0.837691 TGAGGGTGATGTGCAGGACT 60.838 55.000 0.00 0.00 0.00 3.85
4649 4920 0.392193 GAGGGTGATGTGCAGGACTG 60.392 60.000 0.00 0.00 0.00 3.51
4650 4921 1.377725 GGGTGATGTGCAGGACTGG 60.378 63.158 1.01 0.00 0.00 4.00
4651 4922 1.376466 GGTGATGTGCAGGACTGGT 59.624 57.895 1.01 0.00 0.00 4.00
4652 4923 0.957395 GGTGATGTGCAGGACTGGTG 60.957 60.000 1.01 0.00 0.00 4.17
4653 4924 0.035317 GTGATGTGCAGGACTGGTGA 59.965 55.000 1.01 0.00 0.00 4.02
4654 4925 0.986527 TGATGTGCAGGACTGGTGAT 59.013 50.000 1.01 0.00 0.00 3.06
4807 5078 3.804873 GCGTGAAGGATGAAGAGGATTAC 59.195 47.826 0.00 0.00 0.00 1.89
4817 5088 1.789523 AGAGGATTACGCCCTGCTTA 58.210 50.000 0.00 0.00 33.36 3.09
4818 5089 2.116238 AGAGGATTACGCCCTGCTTAA 58.884 47.619 0.00 0.00 33.36 1.85
4819 5090 2.504175 AGAGGATTACGCCCTGCTTAAA 59.496 45.455 0.00 0.00 33.36 1.52
4820 5091 3.054655 AGAGGATTACGCCCTGCTTAAAA 60.055 43.478 0.00 0.00 33.36 1.52
4821 5092 3.692593 GAGGATTACGCCCTGCTTAAAAA 59.307 43.478 0.00 0.00 33.36 1.94
4871 5143 7.337436 TCATCATTTCATTGCATTGTGAGACTA 59.663 33.333 8.36 0.00 0.00 2.59
4891 5163 8.792830 AGACTAGCTGCATTTGTTAATTAAGA 57.207 30.769 1.02 0.00 0.00 2.10
4937 5209 0.744281 AAGGACCGGTTGCACAAAAG 59.256 50.000 9.42 0.00 0.00 2.27
5001 5273 0.676782 AACCCCAATTCTTCGCCTCG 60.677 55.000 0.00 0.00 0.00 4.63
5004 5276 1.097547 CCCAATTCTTCGCCTCGCAT 61.098 55.000 0.00 0.00 0.00 4.73
5005 5277 0.305922 CCAATTCTTCGCCTCGCATC 59.694 55.000 0.00 0.00 0.00 3.91
5014 5286 0.589729 CGCCTCGCATCGGATTTTTG 60.590 55.000 0.00 0.00 0.00 2.44
5015 5287 0.732571 GCCTCGCATCGGATTTTTGA 59.267 50.000 0.00 0.00 0.00 2.69
5019 5291 1.094785 CGCATCGGATTTTTGACCCT 58.905 50.000 0.00 0.00 0.00 4.34
5020 5292 1.472480 CGCATCGGATTTTTGACCCTT 59.528 47.619 0.00 0.00 0.00 3.95
5021 5293 2.680841 CGCATCGGATTTTTGACCCTTA 59.319 45.455 0.00 0.00 0.00 2.69
5022 5294 3.315191 CGCATCGGATTTTTGACCCTTAT 59.685 43.478 0.00 0.00 0.00 1.73
5023 5295 4.202010 CGCATCGGATTTTTGACCCTTATT 60.202 41.667 0.00 0.00 0.00 1.40
5024 5296 5.043248 GCATCGGATTTTTGACCCTTATTG 58.957 41.667 0.00 0.00 0.00 1.90
5025 5297 5.394115 GCATCGGATTTTTGACCCTTATTGT 60.394 40.000 0.00 0.00 0.00 2.71
5026 5298 6.630071 CATCGGATTTTTGACCCTTATTGTT 58.370 36.000 0.00 0.00 0.00 2.83
5121 5829 2.831366 GCGAGGCCATCATGCACAG 61.831 63.158 5.01 0.00 0.00 3.66
5126 5834 2.795973 CCATCATGCACAGTGCCG 59.204 61.111 23.06 13.91 44.23 5.69
5132 5840 1.671054 ATGCACAGTGCCGTACCAC 60.671 57.895 23.06 0.00 44.23 4.16
5148 5856 1.501741 CACCAAGATTTGACGCCCG 59.498 57.895 0.00 0.00 0.00 6.13
5174 5882 1.883275 CCATGCCAAACGTCCTTGTAA 59.117 47.619 0.00 0.00 0.00 2.41
5190 5916 2.925117 TAACCATGCACCCCCACCC 61.925 63.158 0.00 0.00 0.00 4.61
5258 5984 1.134037 ACTTGGTTACGAAGTGGGCAA 60.134 47.619 11.77 0.00 45.73 4.52
5279 6005 3.693471 CCGCAATTTGGCCAGCCA 61.693 61.111 7.43 7.43 45.63 4.75
5316 6094 2.764314 CGGCGCCCAATTCTTCCAG 61.764 63.158 23.46 0.00 0.00 3.86
5386 6164 0.756442 TGCCAAGGCCATGGAATAGC 60.756 55.000 30.98 14.73 43.54 2.97
5429 6207 3.988976 AGTAATGGTGTCAGCTGTCAT 57.011 42.857 16.61 11.67 0.00 3.06
5478 6257 5.156355 CAAAGTGAATTACTGGATGTGCAC 58.844 41.667 10.75 10.75 40.26 4.57
5523 6302 2.155197 ATTTGGTCCACCCAGGCTCC 62.155 60.000 0.00 0.00 46.31 4.70
5526 6305 3.637273 GTCCACCCAGGCTCCGTT 61.637 66.667 0.00 0.00 37.29 4.44
5527 6306 3.319198 TCCACCCAGGCTCCGTTC 61.319 66.667 0.00 0.00 37.29 3.95
5528 6307 3.322466 CCACCCAGGCTCCGTTCT 61.322 66.667 0.00 0.00 0.00 3.01
5529 6308 2.046892 CACCCAGGCTCCGTTCTG 60.047 66.667 0.00 0.00 0.00 3.02
5540 6319 2.981859 TCCGTTCTGGATAGCTTTCC 57.018 50.000 15.70 15.70 43.74 3.13
5541 6320 2.467880 TCCGTTCTGGATAGCTTTCCT 58.532 47.619 21.88 0.00 43.74 3.36
5542 6321 2.431057 TCCGTTCTGGATAGCTTTCCTC 59.569 50.000 21.88 10.22 43.74 3.71
5543 6322 2.168521 CCGTTCTGGATAGCTTTCCTCA 59.831 50.000 21.88 7.51 42.00 3.86
5544 6323 3.190874 CGTTCTGGATAGCTTTCCTCAC 58.809 50.000 21.88 14.54 36.68 3.51
5545 6324 3.368427 CGTTCTGGATAGCTTTCCTCACA 60.368 47.826 21.88 3.16 36.68 3.58
5546 6325 3.895232 TCTGGATAGCTTTCCTCACAC 57.105 47.619 21.88 0.00 36.68 3.82
5547 6326 3.173151 TCTGGATAGCTTTCCTCACACA 58.827 45.455 21.88 2.14 36.68 3.72
5548 6327 3.776969 TCTGGATAGCTTTCCTCACACAT 59.223 43.478 21.88 0.00 36.68 3.21
5549 6328 4.125703 CTGGATAGCTTTCCTCACACATC 58.874 47.826 21.88 1.34 36.68 3.06
5550 6329 3.519107 TGGATAGCTTTCCTCACACATCA 59.481 43.478 21.88 0.00 36.68 3.07
5551 6330 4.164796 TGGATAGCTTTCCTCACACATCAT 59.835 41.667 21.88 0.00 36.68 2.45
5552 6331 5.128919 GGATAGCTTTCCTCACACATCATT 58.871 41.667 15.33 0.00 32.68 2.57
5553 6332 5.591877 GGATAGCTTTCCTCACACATCATTT 59.408 40.000 15.33 0.00 32.68 2.32
5554 6333 4.778534 AGCTTTCCTCACACATCATTTG 57.221 40.909 0.00 0.00 0.00 2.32
5555 6334 3.508793 AGCTTTCCTCACACATCATTTGG 59.491 43.478 0.00 0.00 0.00 3.28
5556 6335 3.841643 CTTTCCTCACACATCATTTGGC 58.158 45.455 0.00 0.00 0.00 4.52
5557 6336 2.885135 TCCTCACACATCATTTGGCT 57.115 45.000 0.00 0.00 0.00 4.75
5558 6337 3.159213 TCCTCACACATCATTTGGCTT 57.841 42.857 0.00 0.00 0.00 4.35
5559 6338 3.499338 TCCTCACACATCATTTGGCTTT 58.501 40.909 0.00 0.00 0.00 3.51
5560 6339 3.896888 TCCTCACACATCATTTGGCTTTT 59.103 39.130 0.00 0.00 0.00 2.27
5561 6340 3.991773 CCTCACACATCATTTGGCTTTTG 59.008 43.478 0.00 0.00 0.00 2.44
5562 6341 3.991773 CTCACACATCATTTGGCTTTTGG 59.008 43.478 0.00 0.00 0.00 3.28
5563 6342 3.640498 TCACACATCATTTGGCTTTTGGA 59.360 39.130 0.00 0.00 0.00 3.53
5564 6343 4.283978 TCACACATCATTTGGCTTTTGGAT 59.716 37.500 0.00 0.00 0.00 3.41
5565 6344 5.479724 TCACACATCATTTGGCTTTTGGATA 59.520 36.000 0.00 0.00 0.00 2.59
5566 6345 6.154877 TCACACATCATTTGGCTTTTGGATAT 59.845 34.615 0.00 0.00 0.00 1.63
5567 6346 6.256975 CACACATCATTTGGCTTTTGGATATG 59.743 38.462 0.00 0.00 0.00 1.78
5568 6347 6.070653 ACACATCATTTGGCTTTTGGATATGT 60.071 34.615 0.00 0.00 0.00 2.29
5569 6348 6.477688 CACATCATTTGGCTTTTGGATATGTC 59.522 38.462 0.00 0.00 0.00 3.06
5570 6349 6.154877 ACATCATTTGGCTTTTGGATATGTCA 59.845 34.615 0.00 0.00 0.00 3.58
5571 6350 6.602410 TCATTTGGCTTTTGGATATGTCAA 57.398 33.333 0.00 0.00 0.00 3.18
5572 6351 7.185318 TCATTTGGCTTTTGGATATGTCAAT 57.815 32.000 0.00 0.00 0.00 2.57
5573 6352 8.303780 TCATTTGGCTTTTGGATATGTCAATA 57.696 30.769 0.00 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.408501 CTCGTGGAGAGGCGCAGAG 62.409 68.421 10.83 0.47 43.20 3.35
1 2 3.443925 CTCGTGGAGAGGCGCAGA 61.444 66.667 10.83 0.00 43.20 4.26
9 10 0.319555 CTTTTGCCGACTCGTGGAGA 60.320 55.000 0.00 0.00 33.32 3.71
10 11 1.291877 CCTTTTGCCGACTCGTGGAG 61.292 60.000 0.00 0.00 35.52 3.86
11 12 1.301401 CCTTTTGCCGACTCGTGGA 60.301 57.895 0.00 0.00 0.00 4.02
12 13 1.301401 TCCTTTTGCCGACTCGTGG 60.301 57.895 0.00 0.00 0.00 4.94
13 14 1.566018 GGTCCTTTTGCCGACTCGTG 61.566 60.000 0.00 0.00 0.00 4.35
14 15 1.301479 GGTCCTTTTGCCGACTCGT 60.301 57.895 0.00 0.00 0.00 4.18
15 16 2.033194 GGGTCCTTTTGCCGACTCG 61.033 63.158 0.00 0.00 0.00 4.18
16 17 0.673956 GAGGGTCCTTTTGCCGACTC 60.674 60.000 0.00 0.00 0.00 3.36
17 18 1.128188 AGAGGGTCCTTTTGCCGACT 61.128 55.000 0.00 0.00 0.00 4.18
18 19 0.611714 TAGAGGGTCCTTTTGCCGAC 59.388 55.000 0.00 0.00 0.00 4.79
19 20 1.209504 CATAGAGGGTCCTTTTGCCGA 59.790 52.381 0.00 0.00 0.00 5.54
20 21 1.065418 ACATAGAGGGTCCTTTTGCCG 60.065 52.381 0.00 0.00 0.00 5.69
21 22 2.644676 GACATAGAGGGTCCTTTTGCC 58.355 52.381 0.00 0.00 0.00 4.52
29 30 4.262249 GCATGTAGAAGGACATAGAGGGTC 60.262 50.000 0.00 0.00 37.99 4.46
30 31 3.643792 GCATGTAGAAGGACATAGAGGGT 59.356 47.826 0.00 0.00 37.99 4.34
31 32 3.305676 CGCATGTAGAAGGACATAGAGGG 60.306 52.174 0.00 0.00 37.99 4.30
32 33 3.319405 ACGCATGTAGAAGGACATAGAGG 59.681 47.826 0.00 0.00 37.99 3.69
33 34 4.294232 CACGCATGTAGAAGGACATAGAG 58.706 47.826 0.00 0.00 37.99 2.43
34 35 3.490933 GCACGCATGTAGAAGGACATAGA 60.491 47.826 0.00 0.00 37.99 1.98
35 36 2.797156 GCACGCATGTAGAAGGACATAG 59.203 50.000 0.00 0.00 37.99 2.23
36 37 2.167487 TGCACGCATGTAGAAGGACATA 59.833 45.455 0.00 0.00 37.99 2.29
37 38 1.066215 TGCACGCATGTAGAAGGACAT 60.066 47.619 0.00 0.00 40.78 3.06
38 39 0.320050 TGCACGCATGTAGAAGGACA 59.680 50.000 0.00 0.00 0.00 4.02
39 40 1.128692 GTTGCACGCATGTAGAAGGAC 59.871 52.381 0.00 0.00 0.00 3.85
40 41 1.438651 GTTGCACGCATGTAGAAGGA 58.561 50.000 0.00 0.00 0.00 3.36
41 42 0.095245 CGTTGCACGCATGTAGAAGG 59.905 55.000 0.00 0.00 33.65 3.46
42 43 1.067693 TCGTTGCACGCATGTAGAAG 58.932 50.000 0.00 0.00 42.21 2.85
43 44 0.787787 GTCGTTGCACGCATGTAGAA 59.212 50.000 0.00 0.00 42.21 2.10
44 45 0.319125 TGTCGTTGCACGCATGTAGA 60.319 50.000 0.00 0.00 42.21 2.59
45 46 0.721154 ATGTCGTTGCACGCATGTAG 59.279 50.000 13.23 0.00 42.21 2.74
46 47 1.127766 GAATGTCGTTGCACGCATGTA 59.872 47.619 14.07 0.00 42.21 2.29
47 48 0.110238 GAATGTCGTTGCACGCATGT 60.110 50.000 14.07 8.41 42.21 3.21
48 49 0.166597 AGAATGTCGTTGCACGCATG 59.833 50.000 14.07 0.00 42.21 4.06
49 50 0.443869 GAGAATGTCGTTGCACGCAT 59.556 50.000 0.00 7.82 42.21 4.73
50 51 1.565156 GGAGAATGTCGTTGCACGCA 61.565 55.000 4.15 6.19 42.21 5.24
51 52 1.132640 GGAGAATGTCGTTGCACGC 59.867 57.895 4.15 1.51 42.21 5.34
52 53 1.148310 AAGGAGAATGTCGTTGCACG 58.852 50.000 0.00 0.00 44.19 5.34
53 54 3.626028 AAAAGGAGAATGTCGTTGCAC 57.374 42.857 0.00 0.00 33.48 4.57
54 55 5.759506 TTAAAAAGGAGAATGTCGTTGCA 57.240 34.783 0.00 0.00 33.48 4.08
55 56 7.637709 ATTTTAAAAAGGAGAATGTCGTTGC 57.362 32.000 4.44 0.00 33.48 4.17
56 57 9.893305 AGTATTTTAAAAAGGAGAATGTCGTTG 57.107 29.630 4.44 0.00 33.48 4.10
58 59 8.440833 CGAGTATTTTAAAAAGGAGAATGTCGT 58.559 33.333 4.44 0.00 0.00 4.34
59 60 8.440833 ACGAGTATTTTAAAAAGGAGAATGTCG 58.559 33.333 4.44 6.33 0.00 4.35
60 61 9.756461 GACGAGTATTTTAAAAAGGAGAATGTC 57.244 33.333 4.44 3.16 0.00 3.06
61 62 9.503399 AGACGAGTATTTTAAAAAGGAGAATGT 57.497 29.630 4.44 0.00 0.00 2.71
169 170 9.224267 GCCATGAGTTGACATACTATTATCATT 57.776 33.333 0.00 0.00 0.00 2.57
170 171 7.826252 GGCCATGAGTTGACATACTATTATCAT 59.174 37.037 0.00 0.00 0.00 2.45
171 172 7.161404 GGCCATGAGTTGACATACTATTATCA 58.839 38.462 0.00 0.00 0.00 2.15
173 182 6.273260 AGGGCCATGAGTTGACATACTATTAT 59.727 38.462 6.18 0.00 0.00 1.28
177 186 3.134623 CAGGGCCATGAGTTGACATACTA 59.865 47.826 13.35 0.00 0.00 1.82
179 188 2.292267 CAGGGCCATGAGTTGACATAC 58.708 52.381 13.35 0.00 0.00 2.39
182 191 1.379916 CCAGGGCCATGAGTTGACA 59.620 57.895 21.32 0.00 0.00 3.58
197 206 4.402056 ACGTATTCCAAGATACACCCAG 57.598 45.455 0.00 0.00 33.12 4.45
201 210 6.897259 TTGCTTACGTATTCCAAGATACAC 57.103 37.500 0.00 0.00 33.12 2.90
221 233 0.657840 CTTACCGCAGTAGCCATTGC 59.342 55.000 0.00 0.00 37.52 3.56
234 246 6.305638 GCTCTTAAAGAAACATTTGCTTACCG 59.694 38.462 0.00 0.00 0.00 4.02
237 249 8.629158 TCTTGCTCTTAAAGAAACATTTGCTTA 58.371 29.630 0.00 0.00 30.79 3.09
269 281 5.459434 GCTTACGGATCAGACTAACTTAAGC 59.541 44.000 1.29 3.43 34.07 3.09
270 282 6.561614 TGCTTACGGATCAGACTAACTTAAG 58.438 40.000 0.00 0.00 0.00 1.85
271 283 6.519679 TGCTTACGGATCAGACTAACTTAA 57.480 37.500 0.00 0.00 0.00 1.85
272 284 6.071784 TGTTGCTTACGGATCAGACTAACTTA 60.072 38.462 0.00 0.00 0.00 2.24
273 285 5.169295 GTTGCTTACGGATCAGACTAACTT 58.831 41.667 0.00 0.00 0.00 2.66
274 286 4.219944 TGTTGCTTACGGATCAGACTAACT 59.780 41.667 0.00 0.00 0.00 2.24
275 287 4.491676 TGTTGCTTACGGATCAGACTAAC 58.508 43.478 0.00 0.00 0.00 2.34
276 288 4.794278 TGTTGCTTACGGATCAGACTAA 57.206 40.909 0.00 0.00 0.00 2.24
278 290 3.326747 GTTGTTGCTTACGGATCAGACT 58.673 45.455 0.00 0.00 0.00 3.24
279 291 2.415512 GGTTGTTGCTTACGGATCAGAC 59.584 50.000 0.00 0.00 0.00 3.51
280 292 2.695359 GGTTGTTGCTTACGGATCAGA 58.305 47.619 0.00 0.00 0.00 3.27
292 304 1.359848 ATCACTCGATCGGTTGTTGC 58.640 50.000 16.41 0.00 0.00 4.17
298 310 6.370442 TGAAAACAATTAATCACTCGATCGGT 59.630 34.615 16.41 9.34 0.00 4.69
360 410 2.897271 TTCTGGCAAGGCTTAATCCA 57.103 45.000 0.00 7.13 0.00 3.41
372 422 1.377202 GCGTTCTCCCATTCTGGCA 60.377 57.895 0.00 0.00 35.79 4.92
385 435 2.063266 TCAATACCGACACAAGCGTTC 58.937 47.619 0.00 0.00 0.00 3.95
387 437 1.999735 CATCAATACCGACACAAGCGT 59.000 47.619 0.00 0.00 0.00 5.07
389 439 5.539582 TTAACATCAATACCGACACAAGC 57.460 39.130 0.00 0.00 0.00 4.01
415 465 3.823304 GCAGTTTGTCTCCCATTCTTCTT 59.177 43.478 0.00 0.00 0.00 2.52
416 466 3.181440 TGCAGTTTGTCTCCCATTCTTCT 60.181 43.478 0.00 0.00 0.00 2.85
417 467 3.057946 GTGCAGTTTGTCTCCCATTCTTC 60.058 47.826 0.00 0.00 0.00 2.87
418 468 2.887152 GTGCAGTTTGTCTCCCATTCTT 59.113 45.455 0.00 0.00 0.00 2.52
419 469 2.508526 GTGCAGTTTGTCTCCCATTCT 58.491 47.619 0.00 0.00 0.00 2.40
458 508 3.989698 ATCCACGCGGCTGAACGAG 62.990 63.158 12.47 0.00 39.59 4.18
459 509 3.982372 GATCCACGCGGCTGAACGA 62.982 63.158 12.47 0.00 35.47 3.85
460 510 3.554692 GATCCACGCGGCTGAACG 61.555 66.667 12.47 0.00 0.00 3.95
461 511 3.554692 CGATCCACGCGGCTGAAC 61.555 66.667 12.47 1.35 34.51 3.18
462 512 3.754530 TCGATCCACGCGGCTGAA 61.755 61.111 12.47 0.00 42.26 3.02
463 513 4.492160 GTCGATCCACGCGGCTGA 62.492 66.667 12.47 3.66 42.26 4.26
464 514 4.498520 AGTCGATCCACGCGGCTG 62.499 66.667 12.47 0.00 42.77 4.85
512 562 1.811359 CGTATCTCGTACCCCATCTCC 59.189 57.143 0.00 0.00 34.52 3.71
521 571 2.733552 TGGCTCGTATCGTATCTCGTAC 59.266 50.000 0.00 0.00 40.80 3.67
522 572 3.030668 TGGCTCGTATCGTATCTCGTA 57.969 47.619 0.00 0.00 40.80 3.43
523 573 1.875009 TGGCTCGTATCGTATCTCGT 58.125 50.000 0.00 0.00 40.80 4.18
524 574 2.032290 TGTTGGCTCGTATCGTATCTCG 60.032 50.000 0.00 0.00 41.41 4.04
525 575 3.620929 TGTTGGCTCGTATCGTATCTC 57.379 47.619 0.00 0.00 0.00 2.75
526 576 4.380841 TTTGTTGGCTCGTATCGTATCT 57.619 40.909 0.00 0.00 0.00 1.98
527 577 4.565564 AGTTTTGTTGGCTCGTATCGTATC 59.434 41.667 0.00 0.00 0.00 2.24
528 578 4.501071 AGTTTTGTTGGCTCGTATCGTAT 58.499 39.130 0.00 0.00 0.00 3.06
529 579 3.916761 AGTTTTGTTGGCTCGTATCGTA 58.083 40.909 0.00 0.00 0.00 3.43
594 644 1.517257 GGTGACGCAGACAGGATCG 60.517 63.158 0.00 0.00 30.17 3.69
612 662 0.958091 TGTTGGTTGGAATCTTGCGG 59.042 50.000 0.00 0.00 0.00 5.69
754 811 6.652481 ACAGGATCGCCAGATTATTAGAATTG 59.348 38.462 0.00 0.00 37.19 2.32
771 828 3.728718 CGTTGGTTTGAAAAACAGGATCG 59.271 43.478 5.33 0.88 36.87 3.69
776 833 3.923461 TCTTGCGTTGGTTTGAAAAACAG 59.077 39.130 5.33 0.00 36.87 3.16
778 835 4.912528 TTCTTGCGTTGGTTTGAAAAAC 57.087 36.364 0.00 0.00 0.00 2.43
797 854 6.761714 CCTATATATACGCCCTGATTGGTTTC 59.238 42.308 0.00 0.00 0.00 2.78
819 876 1.640202 TGGACCCTTCCCTATCCCTA 58.360 55.000 0.00 0.00 42.01 3.53
820 877 0.728843 TTGGACCCTTCCCTATCCCT 59.271 55.000 0.00 0.00 42.01 4.20
821 878 0.844660 GTTGGACCCTTCCCTATCCC 59.155 60.000 0.00 0.00 42.01 3.85
822 879 1.769465 GAGTTGGACCCTTCCCTATCC 59.231 57.143 0.00 0.00 42.01 2.59
823 880 1.769465 GGAGTTGGACCCTTCCCTATC 59.231 57.143 0.00 0.00 42.01 2.08
824 881 1.082194 TGGAGTTGGACCCTTCCCTAT 59.918 52.381 4.17 0.00 42.01 2.57
847 904 2.491022 GGACGGAGATGGAGACGGG 61.491 68.421 0.00 0.00 0.00 5.28
872 935 1.374758 GGAGAGAAGTGTGCACCCG 60.375 63.158 15.69 0.00 0.00 5.28
899 962 2.133201 AGGGGAGGGAGGGAGAGA 59.867 66.667 0.00 0.00 0.00 3.10
901 964 2.182858 GAACAGGGGAGGGAGGGAGA 62.183 65.000 0.00 0.00 0.00 3.71
902 965 1.690985 GAACAGGGGAGGGAGGGAG 60.691 68.421 0.00 0.00 0.00 4.30
903 966 2.454941 GAACAGGGGAGGGAGGGA 59.545 66.667 0.00 0.00 0.00 4.20
920 993 1.517242 GCAATGGAGATAAGGCGAGG 58.483 55.000 0.00 0.00 0.00 4.63
961 1034 1.067821 CTCGTTCCCTGGCTAGCTAAG 59.932 57.143 15.72 12.40 0.00 2.18
962 1035 1.112113 CTCGTTCCCTGGCTAGCTAA 58.888 55.000 15.72 2.40 0.00 3.09
963 1036 0.755698 CCTCGTTCCCTGGCTAGCTA 60.756 60.000 15.72 7.83 0.00 3.32
964 1037 2.060980 CCTCGTTCCCTGGCTAGCT 61.061 63.158 15.72 0.00 0.00 3.32
965 1038 2.022240 CTCCTCGTTCCCTGGCTAGC 62.022 65.000 6.04 6.04 0.00 3.42
973 1046 3.839432 CCGCTCCTCCTCGTTCCC 61.839 72.222 0.00 0.00 0.00 3.97
1213 1286 2.808543 AGTCAACTTGAAGATTCGGCAC 59.191 45.455 0.00 0.00 0.00 5.01
1249 1326 5.070001 CAGTTCTTACCAACCCAAGAATCA 58.930 41.667 0.60 0.00 41.45 2.57
1276 1353 1.888512 GCAAACAGAGCTGGAATTCCA 59.111 47.619 25.53 25.53 45.30 3.53
1303 1380 2.291043 GGCACGGGGAGGAAGAGAA 61.291 63.158 0.00 0.00 0.00 2.87
1376 1460 4.713735 TGATCCAGCGCCGGCAAA 62.714 61.111 28.98 6.45 43.41 3.68
1408 1492 1.071605 CGGAGAAAGTCAAGGCGAAG 58.928 55.000 0.00 0.00 0.00 3.79
1413 1497 4.720649 TCAGATACGGAGAAAGTCAAGG 57.279 45.455 0.00 0.00 0.00 3.61
1419 1529 5.457148 CGTTGAAGATCAGATACGGAGAAAG 59.543 44.000 0.00 0.00 27.95 2.62
1420 1530 5.340803 CGTTGAAGATCAGATACGGAGAAA 58.659 41.667 0.00 0.00 27.95 2.52
1442 1552 4.202245 TGGGAAGAACTTTACTGATCCG 57.798 45.455 0.00 0.00 0.00 4.18
1480 1590 5.321927 TGTGAGTTGTGAGGAGTATCTGTA 58.678 41.667 0.00 0.00 33.73 2.74
1551 1663 1.202580 ACCGAGTAGCATGATTGAGCC 60.203 52.381 0.00 0.00 0.00 4.70
1561 1673 3.514645 GGTTTCGATTAACCGAGTAGCA 58.485 45.455 3.33 0.00 38.33 3.49
1608 1720 1.539827 CACGCCTAACTTTCCCAAAGG 59.460 52.381 1.28 0.00 42.82 3.11
1651 1763 2.975799 GCACGCAACCCTTTCCGA 60.976 61.111 0.00 0.00 0.00 4.55
1755 1868 5.234972 CCCAAACTGAAAATTTGCAGACTTC 59.765 40.000 29.41 5.10 36.01 3.01
1805 1967 4.397417 AGGAAAAAGATGAGCATGCAGTAC 59.603 41.667 21.98 8.58 0.00 2.73
1810 1972 4.715527 AAGAGGAAAAAGATGAGCATGC 57.284 40.909 10.51 10.51 0.00 4.06
1812 1974 5.930569 GCAAAAAGAGGAAAAAGATGAGCAT 59.069 36.000 0.00 0.00 0.00 3.79
1818 1980 7.841915 TTTTTCGCAAAAAGAGGAAAAAGAT 57.158 28.000 6.47 0.00 41.06 2.40
1839 2001 6.385649 TGATACTTCAACGAAAGCCTTTTT 57.614 33.333 0.00 0.00 0.00 1.94
1840 2002 6.575162 ATGATACTTCAACGAAAGCCTTTT 57.425 33.333 0.00 0.00 34.96 2.27
1841 2003 7.865706 ATATGATACTTCAACGAAAGCCTTT 57.134 32.000 0.00 0.00 34.96 3.11
1842 2004 7.865706 AATATGATACTTCAACGAAAGCCTT 57.134 32.000 0.00 0.00 34.96 4.35
1843 2005 7.336931 ACAAATATGATACTTCAACGAAAGCCT 59.663 33.333 0.00 0.00 34.96 4.58
1844 2006 7.472543 ACAAATATGATACTTCAACGAAAGCC 58.527 34.615 0.00 0.00 34.96 4.35
1845 2007 7.640240 GGACAAATATGATACTTCAACGAAAGC 59.360 37.037 0.00 0.00 34.96 3.51
1849 2011 6.566141 TCGGACAAATATGATACTTCAACGA 58.434 36.000 0.00 0.00 34.96 3.85
1857 2019 3.997021 CCTGCCTCGGACAAATATGATAC 59.003 47.826 0.00 0.00 0.00 2.24
1867 2029 3.319198 GAACCCCTGCCTCGGACA 61.319 66.667 0.00 0.00 0.00 4.02
1871 2033 1.522569 CTTAGGAACCCCTGCCTCG 59.477 63.158 0.00 0.00 44.15 4.63
1926 2088 6.907961 TCCTAGTCCTAGCTTGATAGTAACA 58.092 40.000 0.00 0.00 31.95 2.41
1927 2089 7.820578 TTCCTAGTCCTAGCTTGATAGTAAC 57.179 40.000 0.00 0.00 31.95 2.50
1958 2120 5.771469 TGCAATCACCAAATTTGACTAGTG 58.229 37.500 19.86 17.13 0.00 2.74
1991 2153 7.061557 GCTTCTCTGTTCATTTATTTCTGTTGC 59.938 37.037 0.00 0.00 0.00 4.17
2018 2180 3.338818 AACGTGTTGTGAAGCAATCAG 57.661 42.857 0.00 0.00 39.19 2.90
2041 2203 3.318275 GGTCATCAGTTACTAGATCGGCA 59.682 47.826 0.00 0.00 0.00 5.69
2043 2205 4.338400 TGTGGTCATCAGTTACTAGATCGG 59.662 45.833 0.00 0.00 0.00 4.18
2044 2206 5.500645 TGTGGTCATCAGTTACTAGATCG 57.499 43.478 0.00 0.00 0.00 3.69
2045 2207 6.810911 ACATGTGGTCATCAGTTACTAGATC 58.189 40.000 0.00 0.00 31.15 2.75
2046 2208 6.798427 ACATGTGGTCATCAGTTACTAGAT 57.202 37.500 0.00 0.00 31.15 1.98
2047 2209 6.014584 ACAACATGTGGTCATCAGTTACTAGA 60.015 38.462 0.00 0.00 31.15 2.43
2265 2451 8.989131 GGCAGAAGGTACCTGGAATATATATAA 58.011 37.037 17.14 0.00 32.51 0.98
2411 2643 3.181495 ACTCAACTGTCTCGCTACATAGC 60.181 47.826 0.49 0.49 45.62 2.97
2412 2644 4.624336 ACTCAACTGTCTCGCTACATAG 57.376 45.455 0.00 0.00 0.00 2.23
2413 2645 4.575236 CCTACTCAACTGTCTCGCTACATA 59.425 45.833 0.00 0.00 0.00 2.29
2414 2646 3.378742 CCTACTCAACTGTCTCGCTACAT 59.621 47.826 0.00 0.00 0.00 2.29
2415 2647 2.747989 CCTACTCAACTGTCTCGCTACA 59.252 50.000 0.00 0.00 0.00 2.74
2416 2648 2.097791 CCCTACTCAACTGTCTCGCTAC 59.902 54.545 0.00 0.00 0.00 3.58
2484 2716 8.034804 AGGCAACAGATTTAATCAATGGTTAAC 58.965 33.333 7.74 0.00 41.41 2.01
2498 2730 1.547372 GCACCATCAGGCAACAGATTT 59.453 47.619 0.00 0.00 40.33 2.17
2525 2757 6.152323 GGAGCATATCAAACTCATGCCATAAT 59.848 38.462 2.35 0.00 44.90 1.28
2563 2795 3.953201 GCATGTAGCCAATCCTTGC 57.047 52.632 0.00 0.00 37.23 4.01
2663 2895 8.764287 GTTGAAAATAAAAATCAGGACTTGTGG 58.236 33.333 0.00 0.00 0.00 4.17
2679 2911 5.284897 CGTAATGCGCATGTGTTGAAAATAA 59.715 36.000 26.09 0.00 0.00 1.40
2680 2912 4.790651 CGTAATGCGCATGTGTTGAAAATA 59.209 37.500 26.09 5.26 0.00 1.40
2681 2913 3.607641 CGTAATGCGCATGTGTTGAAAAT 59.392 39.130 26.09 6.37 0.00 1.82
2836 3069 9.470399 GGGGGAAACTAATCTACAATTTTTCTA 57.530 33.333 0.00 0.00 0.00 2.10
2839 3072 8.736097 AAGGGGGAAACTAATCTACAATTTTT 57.264 30.769 0.00 0.00 0.00 1.94
2840 3073 8.177456 AGAAGGGGGAAACTAATCTACAATTTT 58.823 33.333 0.00 0.00 0.00 1.82
2849 3082 6.659824 TCAATACAGAAGGGGGAAACTAATC 58.340 40.000 0.00 0.00 0.00 1.75
2883 3116 4.993584 CGATCATCCAGGAATCTAACAAGG 59.006 45.833 0.00 0.00 0.00 3.61
2885 3118 4.101585 AGCGATCATCCAGGAATCTAACAA 59.898 41.667 0.00 0.00 0.00 2.83
2943 3176 1.889829 AGGCTCGATGGATAGCACTAC 59.110 52.381 0.00 0.00 40.61 2.73
3201 3437 3.202906 ACACGCGCAATATTAGGAACAT 58.797 40.909 5.73 0.00 0.00 2.71
3206 3442 3.878086 ATGAACACGCGCAATATTAGG 57.122 42.857 5.73 0.00 0.00 2.69
3211 3447 3.544356 TTCAAATGAACACGCGCAATA 57.456 38.095 5.73 0.00 0.00 1.90
3213 3449 3.926289 TTCAAATGAACACGCGCAA 57.074 42.105 5.73 0.00 0.00 4.85
3524 3760 7.040201 AGTGTAGATACCAGTTCTGTAACGAAA 60.040 37.037 0.00 0.00 40.73 3.46
3571 3807 5.819901 ACTTCAGTAGGCAGAAGCAATTATC 59.180 40.000 0.00 0.00 43.84 1.75
3616 3853 6.585322 AGTCGACCTGTAGAAAGTTTATTTCG 59.415 38.462 13.01 0.00 33.86 3.46
3670 3907 1.570857 ATTGCAACGGATCCTCCCCA 61.571 55.000 10.75 0.00 31.13 4.96
3737 3974 3.119101 TCCTTGTCCTCTATCAACTTCGC 60.119 47.826 0.00 0.00 0.00 4.70
3872 4114 5.452777 AGAAACAAAAGTTAGCGCTCAATC 58.547 37.500 16.34 2.73 0.00 2.67
3978 4222 5.163561 ACCAACCGTTATAATTGGAAGCATG 60.164 40.000 18.87 0.00 44.84 4.06
4000 4244 3.017442 GGAAAATCAAGGCAGGAGTACC 58.983 50.000 0.00 0.00 0.00 3.34
4009 4253 2.819608 TGCACTGTAGGAAAATCAAGGC 59.180 45.455 0.00 0.00 0.00 4.35
4010 4254 4.701651 TCATGCACTGTAGGAAAATCAAGG 59.298 41.667 0.00 0.00 0.00 3.61
4011 4255 5.885230 TCATGCACTGTAGGAAAATCAAG 57.115 39.130 0.00 0.00 0.00 3.02
4012 4256 5.769662 ACTTCATGCACTGTAGGAAAATCAA 59.230 36.000 0.00 0.00 0.00 2.57
4013 4257 5.316167 ACTTCATGCACTGTAGGAAAATCA 58.684 37.500 0.00 0.00 0.00 2.57
4014 4258 5.645497 AGACTTCATGCACTGTAGGAAAATC 59.355 40.000 0.00 0.00 0.00 2.17
4017 4280 4.318332 CAGACTTCATGCACTGTAGGAAA 58.682 43.478 0.00 0.00 0.00 3.13
4064 4335 8.990163 AGTTAAAAGGAATCCAAACAGAGTTA 57.010 30.769 0.61 0.00 0.00 2.24
4081 4352 5.929992 TCGACCTGACAACCATAGTTAAAAG 59.070 40.000 0.00 0.00 33.27 2.27
4125 4396 2.668212 CCCGGCGTTGATGTGTGT 60.668 61.111 6.01 0.00 0.00 3.72
4286 4557 3.826157 CAGGAGGAAGCATGTTTTTGGTA 59.174 43.478 0.00 0.00 0.00 3.25
4426 4697 3.665675 GAACCCGCGGATCAGCACT 62.666 63.158 30.73 0.00 36.85 4.40
4471 4742 0.320697 GTTTCTCTGCCGTGTAGGGT 59.679 55.000 0.00 0.00 41.48 4.34
4489 4760 0.985490 GGCCCCTCAAGATCCTCTGT 60.985 60.000 0.00 0.00 0.00 3.41
4584 4855 1.435563 TGTACTGGAGAAGGGAGGGAA 59.564 52.381 0.00 0.00 0.00 3.97
4635 4906 0.986527 ATCACCAGTCCTGCACATCA 59.013 50.000 0.00 0.00 0.00 3.07
4639 4910 0.957395 CCACATCACCAGTCCTGCAC 60.957 60.000 0.00 0.00 0.00 4.57
4640 4911 1.376086 CCACATCACCAGTCCTGCA 59.624 57.895 0.00 0.00 0.00 4.41
4641 4912 0.957395 CACCACATCACCAGTCCTGC 60.957 60.000 0.00 0.00 0.00 4.85
4642 4913 0.957395 GCACCACATCACCAGTCCTG 60.957 60.000 0.00 0.00 0.00 3.86
4643 4914 1.376466 GCACCACATCACCAGTCCT 59.624 57.895 0.00 0.00 0.00 3.85
4644 4915 1.073025 TGCACCACATCACCAGTCC 59.927 57.895 0.00 0.00 0.00 3.85
4645 4916 0.250467 AGTGCACCACATCACCAGTC 60.250 55.000 14.63 0.00 36.74 3.51
4646 4917 0.183492 AAGTGCACCACATCACCAGT 59.817 50.000 14.63 0.00 36.74 4.00
4647 4918 0.877071 GAAGTGCACCACATCACCAG 59.123 55.000 14.63 0.00 36.74 4.00
4648 4919 0.473755 AGAAGTGCACCACATCACCA 59.526 50.000 14.63 0.00 34.97 4.17
4649 4920 0.877071 CAGAAGTGCACCACATCACC 59.123 55.000 14.63 0.00 34.97 4.02
4776 5047 2.166459 TCATCCTTCACGCTGGAGTAAG 59.834 50.000 0.00 0.00 35.63 2.34
4824 5095 9.176460 TGATGAACATTACAGATAATTCTTGCA 57.824 29.630 0.00 0.00 0.00 4.08
4834 5105 8.471609 TGCAATGAAATGATGAACATTACAGAT 58.528 29.630 0.00 0.00 46.90 2.90
4837 5108 8.874816 CAATGCAATGAAATGATGAACATTACA 58.125 29.630 0.00 0.00 46.90 2.41
4871 5143 7.693969 ACTCTCTTAATTAACAAATGCAGCT 57.306 32.000 0.00 0.00 0.00 4.24
4891 5163 4.513318 GCTGTCAAGCTTGTTCTAAACTCT 59.487 41.667 25.19 0.00 46.60 3.24
5001 5273 4.918810 ATAAGGGTCAAAAATCCGATGC 57.081 40.909 0.00 0.00 0.00 3.91
5004 5276 5.770663 TCAACAATAAGGGTCAAAAATCCGA 59.229 36.000 0.00 0.00 0.00 4.55
5005 5277 6.019779 TCAACAATAAGGGTCAAAAATCCG 57.980 37.500 0.00 0.00 0.00 4.18
5014 5286 4.811557 CGAGGATCTTCAACAATAAGGGTC 59.188 45.833 5.61 0.00 0.00 4.46
5015 5287 4.770795 CGAGGATCTTCAACAATAAGGGT 58.229 43.478 5.61 0.00 0.00 4.34
5019 5291 5.647658 ACAATGCGAGGATCTTCAACAATAA 59.352 36.000 5.61 0.00 0.00 1.40
5020 5292 5.065090 CACAATGCGAGGATCTTCAACAATA 59.935 40.000 5.61 0.00 0.00 1.90
5021 5293 4.012374 ACAATGCGAGGATCTTCAACAAT 58.988 39.130 5.61 0.00 0.00 2.71
5022 5294 3.189080 CACAATGCGAGGATCTTCAACAA 59.811 43.478 5.61 0.00 0.00 2.83
5023 5295 2.743664 CACAATGCGAGGATCTTCAACA 59.256 45.455 5.61 3.00 0.00 3.33
5024 5296 2.744202 ACACAATGCGAGGATCTTCAAC 59.256 45.455 5.61 0.00 0.00 3.18
5025 5297 3.057969 ACACAATGCGAGGATCTTCAA 57.942 42.857 5.61 0.00 0.00 2.69
5026 5298 2.768253 ACACAATGCGAGGATCTTCA 57.232 45.000 5.61 0.00 0.00 3.02
5101 5809 2.203112 TGCATGATGGCCTCGCTC 60.203 61.111 3.32 0.00 0.00 5.03
5121 5829 1.199097 CAAATCTTGGTGGTACGGCAC 59.801 52.381 0.00 0.00 0.00 5.01
5126 5834 1.467342 GGCGTCAAATCTTGGTGGTAC 59.533 52.381 0.00 0.00 0.00 3.34
5132 5840 2.406616 CCCGGGCGTCAAATCTTGG 61.407 63.158 8.08 0.00 0.00 3.61
5148 5856 2.212900 GACGTTTGGCATGGCTTCCC 62.213 60.000 21.08 0.00 0.00 3.97
5174 5882 3.901005 TAGGGTGGGGGTGCATGGT 62.901 63.158 0.00 0.00 0.00 3.55
5190 5916 7.495279 CCTCTTCAAGTTCAGATTCTCCATTAG 59.505 40.741 0.00 0.00 0.00 1.73
5316 6094 3.064900 AGGAGCTTCAAGACCACAATC 57.935 47.619 0.00 0.00 0.00 2.67
5325 6103 1.151668 CCACGACAAGGAGCTTCAAG 58.848 55.000 0.00 0.00 0.00 3.02
5357 6135 1.351017 TGGCCTTGGCATATAGGTAGC 59.649 52.381 14.04 0.00 33.91 3.58
5359 6137 2.308570 CCATGGCCTTGGCATATAGGTA 59.691 50.000 23.67 0.00 47.00 3.08
5386 6164 1.804748 GAAGTTAACTGCCTTGGGTCG 59.195 52.381 9.34 0.00 0.00 4.79
5429 6207 3.685139 GACACTTCTGTCCCATCTTCA 57.315 47.619 0.00 0.00 41.06 3.02
5478 6257 1.074072 TCAAATGGACCCACGGTGG 59.926 57.895 20.41 20.41 35.25 4.61
5523 6302 3.190874 GTGAGGAAAGCTATCCAGAACG 58.809 50.000 0.00 0.00 42.27 3.95
5524 6303 3.935828 GTGTGAGGAAAGCTATCCAGAAC 59.064 47.826 0.00 0.00 42.27 3.01
5525 6304 3.582647 TGTGTGAGGAAAGCTATCCAGAA 59.417 43.478 0.00 0.00 42.27 3.02
5526 6305 3.173151 TGTGTGAGGAAAGCTATCCAGA 58.827 45.455 0.00 0.00 42.27 3.86
5527 6306 3.616956 TGTGTGAGGAAAGCTATCCAG 57.383 47.619 0.00 0.00 42.27 3.86
5528 6307 3.519107 TGATGTGTGAGGAAAGCTATCCA 59.481 43.478 0.00 0.00 42.27 3.41
5529 6308 4.142609 TGATGTGTGAGGAAAGCTATCC 57.857 45.455 0.00 0.00 39.96 2.59
5530 6309 6.459298 CCAAATGATGTGTGAGGAAAGCTATC 60.459 42.308 0.00 0.00 0.00 2.08
5531 6310 5.359009 CCAAATGATGTGTGAGGAAAGCTAT 59.641 40.000 0.00 0.00 0.00 2.97
5532 6311 4.701651 CCAAATGATGTGTGAGGAAAGCTA 59.298 41.667 0.00 0.00 0.00 3.32
5533 6312 3.508793 CCAAATGATGTGTGAGGAAAGCT 59.491 43.478 0.00 0.00 0.00 3.74
5534 6313 3.841643 CCAAATGATGTGTGAGGAAAGC 58.158 45.455 0.00 0.00 0.00 3.51
5535 6314 3.508793 AGCCAAATGATGTGTGAGGAAAG 59.491 43.478 0.00 0.00 0.00 2.62
5536 6315 3.499338 AGCCAAATGATGTGTGAGGAAA 58.501 40.909 0.00 0.00 0.00 3.13
5537 6316 3.159213 AGCCAAATGATGTGTGAGGAA 57.841 42.857 0.00 0.00 0.00 3.36
5538 6317 2.885135 AGCCAAATGATGTGTGAGGA 57.115 45.000 0.00 0.00 0.00 3.71
5539 6318 3.947910 AAAGCCAAATGATGTGTGAGG 57.052 42.857 0.00 0.00 0.00 3.86
5540 6319 3.991773 CCAAAAGCCAAATGATGTGTGAG 59.008 43.478 0.00 0.00 0.00 3.51
5541 6320 3.640498 TCCAAAAGCCAAATGATGTGTGA 59.360 39.130 0.00 0.00 0.00 3.58
5542 6321 3.992643 TCCAAAAGCCAAATGATGTGTG 58.007 40.909 0.00 0.00 0.00 3.82
5543 6322 4.895668 ATCCAAAAGCCAAATGATGTGT 57.104 36.364 0.00 0.00 0.00 3.72
5544 6323 6.342906 ACATATCCAAAAGCCAAATGATGTG 58.657 36.000 0.00 0.00 0.00 3.21
5545 6324 6.154877 TGACATATCCAAAAGCCAAATGATGT 59.845 34.615 0.00 0.00 0.00 3.06
5546 6325 6.575267 TGACATATCCAAAAGCCAAATGATG 58.425 36.000 0.00 0.00 0.00 3.07
5547 6326 6.795144 TGACATATCCAAAAGCCAAATGAT 57.205 33.333 0.00 0.00 0.00 2.45
5548 6327 6.602410 TTGACATATCCAAAAGCCAAATGA 57.398 33.333 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.