Multiple sequence alignment - TraesCS4A01G219700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G219700 chr4A 100.000 3480 0 0 1 3480 521920907 521917428 0.000000e+00 6427.0
1 TraesCS4A01G219700 chr4A 98.592 71 0 1 1 71 20252433 20252502 1.310000e-24 124.0
2 TraesCS4A01G219700 chr4A 94.667 75 3 1 1 75 706604050 706603977 7.890000e-22 115.0
3 TraesCS4A01G219700 chr4A 93.421 76 3 1 1 74 157584908 157584983 1.020000e-20 111.0
4 TraesCS4A01G219700 chr4D 91.754 2971 100 49 303 3215 69680814 69677931 0.000000e+00 3995.0
5 TraesCS4A01G219700 chr4D 88.119 202 6 8 3279 3480 69677921 69677738 1.260000e-54 224.0
6 TraesCS4A01G219700 chr4D 94.595 74 3 1 1 74 428942920 428942848 2.840000e-21 113.0
7 TraesCS4A01G219700 chr4B 92.397 2236 102 26 953 3139 103056459 103054243 0.000000e+00 3125.0
8 TraesCS4A01G219700 chr4B 89.808 520 23 11 303 822 103057386 103056897 1.050000e-179 640.0
9 TraesCS4A01G219700 chr4B 91.500 200 13 3 3024 3222 103054238 103054042 4.430000e-69 272.0
10 TraesCS4A01G219700 chr4B 97.674 43 1 0 3434 3476 103051241 103051199 1.340000e-09 75.0
11 TraesCS4A01G219700 chr2B 93.755 1153 45 16 2097 3239 214818215 214819350 0.000000e+00 1705.0
12 TraesCS4A01G219700 chr2B 98.760 242 3 0 66 307 608697055 608697296 6.900000e-117 431.0
13 TraesCS4A01G219700 chr2B 98.750 240 3 0 66 305 298558864 298559103 8.930000e-116 427.0
14 TraesCS4A01G219700 chr2B 94.340 53 3 0 1034 1086 799029270 799029322 8.010000e-12 82.4
15 TraesCS4A01G219700 chr2B 92.453 53 4 0 1034 1086 799107558 799107506 3.720000e-10 76.8
16 TraesCS4A01G219700 chr7B 99.167 240 2 0 66 305 677059114 677059353 1.920000e-117 433.0
17 TraesCS4A01G219700 chr7B 97.984 248 5 0 66 313 154366246 154365999 6.900000e-117 431.0
18 TraesCS4A01G219700 chr7B 97.959 245 5 0 66 310 488783407 488783651 3.210000e-115 425.0
19 TraesCS4A01G219700 chr7B 97.551 245 6 0 66 310 117799316 117799072 1.490000e-113 420.0
20 TraesCS4A01G219700 chr7B 94.521 73 4 0 1 73 669205453 669205525 2.840000e-21 113.0
21 TraesCS4A01G219700 chr7B 94.521 73 3 1 1 73 23409602 23409673 1.020000e-20 111.0
22 TraesCS4A01G219700 chr7B 97.500 40 1 0 1032 1071 426972987 426973026 6.230000e-08 69.4
23 TraesCS4A01G219700 chr7A 98.750 240 3 0 66 305 664841960 664842199 8.930000e-116 427.0
24 TraesCS4A01G219700 chr7A 95.833 72 3 0 1 72 211806948 211806877 2.190000e-22 117.0
25 TraesCS4A01G219700 chr7A 97.500 40 1 0 1032 1071 473921377 473921416 6.230000e-08 69.4
26 TraesCS4A01G219700 chr1B 96.471 255 5 1 66 316 2112874 2112620 5.370000e-113 418.0
27 TraesCS4A01G219700 chr1B 96.414 251 9 0 66 316 2090098 2089848 6.950000e-112 414.0
28 TraesCS4A01G219700 chr1B 91.915 235 17 2 1202 1435 481542083 481541850 9.310000e-86 327.0
29 TraesCS4A01G219700 chr1B 92.405 79 3 3 1 79 561755521 561755446 3.670000e-20 110.0
30 TraesCS4A01G219700 chr1D 93.191 235 14 2 1202 1435 359665806 359665573 9.250000e-91 344.0
31 TraesCS4A01G219700 chr1A 92.340 235 16 2 1202 1435 459188125 459187892 2.000000e-87 333.0
32 TraesCS4A01G219700 chr3D 91.064 235 19 2 1202 1435 515776705 515776938 2.020000e-82 316.0
33 TraesCS4A01G219700 chr3D 84.454 238 25 6 1204 1429 445037938 445037701 1.260000e-54 224.0
34 TraesCS4A01G219700 chr3A 91.064 235 19 2 1202 1435 650056443 650056676 2.020000e-82 316.0
35 TraesCS4A01G219700 chr3B 89.787 235 22 2 1202 1435 678548566 678548799 2.030000e-77 300.0
36 TraesCS4A01G219700 chr2D 80.488 246 34 10 1203 1435 175331639 175331883 3.570000e-40 176.0
37 TraesCS4A01G219700 chr6A 95.775 71 3 0 1 71 39142779 39142849 7.890000e-22 115.0
38 TraesCS4A01G219700 chr7D 97.500 40 1 0 1032 1071 412761583 412761622 6.230000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G219700 chr4A 521917428 521920907 3479 True 6427.0 6427 100.00000 1 3480 1 chr4A.!!$R1 3479
1 TraesCS4A01G219700 chr4D 69677738 69680814 3076 True 2109.5 3995 89.93650 303 3480 2 chr4D.!!$R2 3177
2 TraesCS4A01G219700 chr4B 103051199 103057386 6187 True 1028.0 3125 92.84475 303 3476 4 chr4B.!!$R1 3173
3 TraesCS4A01G219700 chr2B 214818215 214819350 1135 False 1705.0 1705 93.75500 2097 3239 1 chr2B.!!$F1 1142


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
533 534 0.346932 ATGCCTCCCTCCCTTCCTAA 59.653 55.000 0.0 0.0 0.0 2.69 F
534 535 0.620700 TGCCTCCCTCCCTTCCTAAC 60.621 60.000 0.0 0.0 0.0 2.34 F
537 538 1.002533 TCCCTCCCTTCCTAACCCG 59.997 63.158 0.0 0.0 0.0 5.28 F
1679 2017 0.108662 GGCCATGCGAAAAAGAAGGG 60.109 55.000 0.0 0.0 0.0 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1479 1800 0.112606 TTGACAGAGAGAGACGGGGT 59.887 55.0 0.0 0.0 0.00 4.95 R
1637 1975 0.676782 ACGCACCTAACCTGCCAATC 60.677 55.0 0.0 0.0 0.00 2.67 R
2194 2550 0.798776 GCATGGAGTGGTTCGAGTTG 59.201 55.0 0.0 0.0 0.00 3.16 R
3345 4117 0.179207 TGAGTACACGACGATGACGC 60.179 55.0 0.0 0.0 43.96 5.19 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.148104 AGTTAAATTATCGACCTGAAACTACAC 57.852 33.333 0.00 0.00 0.00 2.90
36 37 6.642683 AAATTATCGACCTGAAACTACACG 57.357 37.500 0.00 0.00 0.00 4.49
37 38 5.571784 ATTATCGACCTGAAACTACACGA 57.428 39.130 0.00 0.00 0.00 4.35
38 39 3.928727 ATCGACCTGAAACTACACGAA 57.071 42.857 0.00 0.00 32.48 3.85
39 40 3.928727 TCGACCTGAAACTACACGAAT 57.071 42.857 0.00 0.00 0.00 3.34
40 41 3.571571 TCGACCTGAAACTACACGAATG 58.428 45.455 0.00 0.00 0.00 2.67
41 42 3.253921 TCGACCTGAAACTACACGAATGA 59.746 43.478 0.00 0.00 0.00 2.57
42 43 3.364023 CGACCTGAAACTACACGAATGAC 59.636 47.826 0.00 0.00 0.00 3.06
43 44 4.557205 GACCTGAAACTACACGAATGACT 58.443 43.478 0.00 0.00 0.00 3.41
44 45 4.957296 ACCTGAAACTACACGAATGACTT 58.043 39.130 0.00 0.00 0.00 3.01
45 46 6.092955 ACCTGAAACTACACGAATGACTTA 57.907 37.500 0.00 0.00 0.00 2.24
46 47 6.698380 ACCTGAAACTACACGAATGACTTAT 58.302 36.000 0.00 0.00 0.00 1.73
47 48 7.833786 ACCTGAAACTACACGAATGACTTATA 58.166 34.615 0.00 0.00 0.00 0.98
48 49 7.758528 ACCTGAAACTACACGAATGACTTATAC 59.241 37.037 0.00 0.00 0.00 1.47
49 50 7.758076 CCTGAAACTACACGAATGACTTATACA 59.242 37.037 0.00 0.00 0.00 2.29
50 51 8.456904 TGAAACTACACGAATGACTTATACAC 57.543 34.615 0.00 0.00 0.00 2.90
51 52 7.543172 TGAAACTACACGAATGACTTATACACC 59.457 37.037 0.00 0.00 0.00 4.16
52 53 5.575957 ACTACACGAATGACTTATACACCG 58.424 41.667 0.00 0.00 0.00 4.94
53 54 3.777478 ACACGAATGACTTATACACCGG 58.223 45.455 0.00 0.00 0.00 5.28
54 55 3.120792 CACGAATGACTTATACACCGGG 58.879 50.000 6.32 0.00 0.00 5.73
55 56 3.025978 ACGAATGACTTATACACCGGGA 58.974 45.455 6.32 0.00 0.00 5.14
56 57 3.181483 ACGAATGACTTATACACCGGGAC 60.181 47.826 6.32 0.00 0.00 4.46
71 72 1.894881 GGGACGGAGGTAGTAGCTAG 58.105 60.000 0.89 2.51 0.00 3.42
72 73 1.142667 GGGACGGAGGTAGTAGCTAGT 59.857 57.143 6.29 6.29 0.00 2.57
73 74 2.370189 GGGACGGAGGTAGTAGCTAGTA 59.630 54.545 4.07 4.07 0.00 1.82
74 75 3.181450 GGGACGGAGGTAGTAGCTAGTAA 60.181 52.174 9.92 0.00 0.00 2.24
75 76 3.812609 GGACGGAGGTAGTAGCTAGTAAC 59.187 52.174 14.81 14.81 0.00 2.50
76 77 4.446371 GACGGAGGTAGTAGCTAGTAACA 58.554 47.826 22.73 0.00 0.00 2.41
77 78 5.046288 ACGGAGGTAGTAGCTAGTAACAT 57.954 43.478 22.73 10.04 0.00 2.71
78 79 6.179906 ACGGAGGTAGTAGCTAGTAACATA 57.820 41.667 22.73 0.00 0.00 2.29
79 80 6.229733 ACGGAGGTAGTAGCTAGTAACATAG 58.770 44.000 22.73 15.38 0.00 2.23
88 89 2.974536 GCTAGTAACATAGCGCTCTTCG 59.025 50.000 16.34 3.03 38.90 3.79
89 90 3.303857 GCTAGTAACATAGCGCTCTTCGA 60.304 47.826 16.34 0.00 38.90 3.71
90 91 3.341857 AGTAACATAGCGCTCTTCGAG 57.658 47.619 16.34 0.64 41.67 4.04
91 92 2.943690 AGTAACATAGCGCTCTTCGAGA 59.056 45.455 16.34 0.00 41.67 4.04
92 93 2.941453 AACATAGCGCTCTTCGAGAA 57.059 45.000 16.34 0.00 41.67 2.87
93 94 2.941453 ACATAGCGCTCTTCGAGAAA 57.059 45.000 16.34 0.00 41.67 2.52
94 95 3.232213 ACATAGCGCTCTTCGAGAAAA 57.768 42.857 16.34 0.00 41.67 2.29
95 96 3.786635 ACATAGCGCTCTTCGAGAAAAT 58.213 40.909 16.34 0.00 41.67 1.82
96 97 4.184629 ACATAGCGCTCTTCGAGAAAATT 58.815 39.130 16.34 0.00 41.67 1.82
97 98 4.268884 ACATAGCGCTCTTCGAGAAAATTC 59.731 41.667 16.34 0.00 41.67 2.17
98 99 2.966050 AGCGCTCTTCGAGAAAATTCT 58.034 42.857 2.64 0.00 41.67 2.40
99 100 2.670414 AGCGCTCTTCGAGAAAATTCTG 59.330 45.455 2.64 0.00 41.67 3.02
100 101 2.786021 GCGCTCTTCGAGAAAATTCTGC 60.786 50.000 0.00 0.00 41.67 4.26
101 102 2.670414 CGCTCTTCGAGAAAATTCTGCT 59.330 45.455 0.00 0.00 41.67 4.24
102 103 3.124297 CGCTCTTCGAGAAAATTCTGCTT 59.876 43.478 0.00 0.00 41.67 3.91
103 104 4.327357 CGCTCTTCGAGAAAATTCTGCTTA 59.673 41.667 0.00 0.00 41.67 3.09
104 105 5.006165 CGCTCTTCGAGAAAATTCTGCTTAT 59.994 40.000 0.00 0.00 41.67 1.73
105 106 6.190962 GCTCTTCGAGAAAATTCTGCTTATG 58.809 40.000 0.00 0.00 37.73 1.90
106 107 6.183360 GCTCTTCGAGAAAATTCTGCTTATGT 60.183 38.462 0.00 0.00 37.73 2.29
107 108 7.065216 TCTTCGAGAAAATTCTGCTTATGTG 57.935 36.000 0.00 0.00 37.73 3.21
108 109 5.801350 TCGAGAAAATTCTGCTTATGTGG 57.199 39.130 0.00 0.00 37.73 4.17
109 110 4.094887 TCGAGAAAATTCTGCTTATGTGGC 59.905 41.667 0.00 0.00 37.73 5.01
110 111 4.142622 CGAGAAAATTCTGCTTATGTGGCA 60.143 41.667 0.00 0.00 37.73 4.92
111 112 5.619757 CGAGAAAATTCTGCTTATGTGGCAA 60.620 40.000 0.00 0.00 39.30 4.52
112 113 5.717119 AGAAAATTCTGCTTATGTGGCAAG 58.283 37.500 0.00 0.00 39.30 4.01
113 114 5.244626 AGAAAATTCTGCTTATGTGGCAAGT 59.755 36.000 0.00 0.00 39.30 3.16
114 115 6.434028 AGAAAATTCTGCTTATGTGGCAAGTA 59.566 34.615 0.00 0.00 39.30 2.24
115 116 6.588719 AAATTCTGCTTATGTGGCAAGTAA 57.411 33.333 0.00 0.00 39.30 2.24
116 117 6.780457 AATTCTGCTTATGTGGCAAGTAAT 57.220 33.333 0.00 0.00 39.30 1.89
117 118 6.780457 ATTCTGCTTATGTGGCAAGTAATT 57.220 33.333 0.00 0.00 39.30 1.40
118 119 7.880160 ATTCTGCTTATGTGGCAAGTAATTA 57.120 32.000 0.00 0.00 39.30 1.40
119 120 7.695480 TTCTGCTTATGTGGCAAGTAATTAA 57.305 32.000 0.00 0.00 39.30 1.40
120 121 7.880160 TCTGCTTATGTGGCAAGTAATTAAT 57.120 32.000 0.00 0.00 39.30 1.40
121 122 7.706159 TCTGCTTATGTGGCAAGTAATTAATG 58.294 34.615 0.00 0.00 39.30 1.90
122 123 7.555914 TCTGCTTATGTGGCAAGTAATTAATGA 59.444 33.333 0.00 0.00 39.30 2.57
123 124 7.706159 TGCTTATGTGGCAAGTAATTAATGAG 58.294 34.615 0.00 0.00 36.71 2.90
124 125 7.555914 TGCTTATGTGGCAAGTAATTAATGAGA 59.444 33.333 0.00 0.00 36.71 3.27
125 126 8.072567 GCTTATGTGGCAAGTAATTAATGAGAG 58.927 37.037 0.00 0.00 0.00 3.20
126 127 6.949352 ATGTGGCAAGTAATTAATGAGAGG 57.051 37.500 0.00 0.00 0.00 3.69
127 128 5.815581 TGTGGCAAGTAATTAATGAGAGGT 58.184 37.500 0.00 0.00 0.00 3.85
128 129 5.647658 TGTGGCAAGTAATTAATGAGAGGTG 59.352 40.000 0.00 0.00 0.00 4.00
129 130 5.066505 GTGGCAAGTAATTAATGAGAGGTGG 59.933 44.000 0.00 0.00 0.00 4.61
130 131 5.193679 GGCAAGTAATTAATGAGAGGTGGT 58.806 41.667 4.19 0.00 0.00 4.16
131 132 6.069905 TGGCAAGTAATTAATGAGAGGTGGTA 60.070 38.462 4.19 0.00 0.00 3.25
132 133 6.826741 GGCAAGTAATTAATGAGAGGTGGTAA 59.173 38.462 4.19 0.00 0.00 2.85
133 134 7.201705 GGCAAGTAATTAATGAGAGGTGGTAAC 60.202 40.741 4.19 0.00 0.00 2.50
162 163 5.773239 TGTTACTGTAACATAGCGCTTTC 57.227 39.130 25.14 0.00 43.23 2.62
163 164 4.628333 TGTTACTGTAACATAGCGCTTTCC 59.372 41.667 25.14 0.00 43.23 3.13
164 165 3.328382 ACTGTAACATAGCGCTTTCCA 57.672 42.857 18.68 0.00 0.00 3.53
165 166 3.670625 ACTGTAACATAGCGCTTTCCAA 58.329 40.909 18.68 0.00 0.00 3.53
166 167 3.684788 ACTGTAACATAGCGCTTTCCAAG 59.315 43.478 18.68 7.94 0.00 3.61
167 168 3.932710 CTGTAACATAGCGCTTTCCAAGA 59.067 43.478 18.68 0.00 0.00 3.02
168 169 3.682858 TGTAACATAGCGCTTTCCAAGAC 59.317 43.478 18.68 6.42 0.00 3.01
169 170 2.472695 ACATAGCGCTTTCCAAGACA 57.527 45.000 18.68 0.00 0.00 3.41
170 171 2.778299 ACATAGCGCTTTCCAAGACAA 58.222 42.857 18.68 0.00 0.00 3.18
171 172 2.744202 ACATAGCGCTTTCCAAGACAAG 59.256 45.455 18.68 0.00 0.00 3.16
172 173 2.831685 TAGCGCTTTCCAAGACAAGA 57.168 45.000 18.68 0.00 0.00 3.02
173 174 2.191128 AGCGCTTTCCAAGACAAGAT 57.809 45.000 2.64 0.00 0.00 2.40
174 175 1.808945 AGCGCTTTCCAAGACAAGATG 59.191 47.619 2.64 0.00 0.00 2.90
175 176 1.806542 GCGCTTTCCAAGACAAGATGA 59.193 47.619 0.00 0.00 0.00 2.92
176 177 2.159599 GCGCTTTCCAAGACAAGATGAG 60.160 50.000 0.00 0.00 0.00 2.90
177 178 3.070018 CGCTTTCCAAGACAAGATGAGT 58.930 45.455 0.00 0.00 0.00 3.41
178 179 3.124297 CGCTTTCCAAGACAAGATGAGTC 59.876 47.826 0.00 0.00 36.26 3.36
180 181 5.482908 GCTTTCCAAGACAAGATGAGTCTA 58.517 41.667 0.00 0.00 45.11 2.59
181 182 6.112058 GCTTTCCAAGACAAGATGAGTCTAT 58.888 40.000 0.00 0.00 45.11 1.98
182 183 6.036953 GCTTTCCAAGACAAGATGAGTCTATG 59.963 42.308 0.00 0.00 45.11 2.23
183 184 6.857437 TTCCAAGACAAGATGAGTCTATGA 57.143 37.500 0.00 0.00 45.11 2.15
184 185 6.462552 TCCAAGACAAGATGAGTCTATGAG 57.537 41.667 0.00 0.00 45.11 2.90
185 186 5.049167 CCAAGACAAGATGAGTCTATGAGC 58.951 45.833 0.00 0.00 45.11 4.26
186 187 5.163426 CCAAGACAAGATGAGTCTATGAGCT 60.163 44.000 0.00 0.00 45.11 4.09
187 188 6.040278 CCAAGACAAGATGAGTCTATGAGCTA 59.960 42.308 0.00 0.00 45.11 3.32
188 189 6.882610 AGACAAGATGAGTCTATGAGCTAG 57.117 41.667 0.00 0.00 44.10 3.42
189 190 6.364701 AGACAAGATGAGTCTATGAGCTAGT 58.635 40.000 0.00 0.00 44.10 2.57
190 191 7.513856 AGACAAGATGAGTCTATGAGCTAGTA 58.486 38.462 0.00 0.00 44.10 1.82
191 192 7.996066 AGACAAGATGAGTCTATGAGCTAGTAA 59.004 37.037 0.00 0.00 44.10 2.24
192 193 8.526667 ACAAGATGAGTCTATGAGCTAGTAAA 57.473 34.615 0.00 0.00 33.30 2.01
193 194 9.142014 ACAAGATGAGTCTATGAGCTAGTAAAT 57.858 33.333 0.00 0.00 33.30 1.40
194 195 9.409312 CAAGATGAGTCTATGAGCTAGTAAATG 57.591 37.037 0.00 0.00 33.30 2.32
195 196 8.932434 AGATGAGTCTATGAGCTAGTAAATGA 57.068 34.615 0.00 0.00 31.36 2.57
196 197 9.360901 AGATGAGTCTATGAGCTAGTAAATGAA 57.639 33.333 0.00 0.00 31.36 2.57
197 198 9.624697 GATGAGTCTATGAGCTAGTAAATGAAG 57.375 37.037 0.00 0.00 0.00 3.02
198 199 7.429633 TGAGTCTATGAGCTAGTAAATGAAGC 58.570 38.462 0.00 0.00 36.48 3.86
199 200 6.754193 AGTCTATGAGCTAGTAAATGAAGCC 58.246 40.000 0.00 0.00 36.92 4.35
200 201 6.325028 AGTCTATGAGCTAGTAAATGAAGCCA 59.675 38.462 0.00 0.00 36.92 4.75
201 202 7.016072 AGTCTATGAGCTAGTAAATGAAGCCAT 59.984 37.037 0.00 0.00 36.92 4.40
202 203 7.330700 GTCTATGAGCTAGTAAATGAAGCCATC 59.669 40.741 0.00 0.00 36.92 3.51
203 204 5.620738 TGAGCTAGTAAATGAAGCCATCT 57.379 39.130 0.00 0.00 36.92 2.90
204 205 6.731292 TGAGCTAGTAAATGAAGCCATCTA 57.269 37.500 0.00 0.00 36.92 1.98
205 206 7.308450 TGAGCTAGTAAATGAAGCCATCTAT 57.692 36.000 0.00 0.00 36.92 1.98
206 207 7.157347 TGAGCTAGTAAATGAAGCCATCTATG 58.843 38.462 0.00 0.00 36.92 2.23
207 208 7.015584 TGAGCTAGTAAATGAAGCCATCTATGA 59.984 37.037 0.00 0.00 36.92 2.15
208 209 7.915930 AGCTAGTAAATGAAGCCATCTATGAT 58.084 34.615 0.00 0.00 36.92 2.45
209 210 9.040259 AGCTAGTAAATGAAGCCATCTATGATA 57.960 33.333 0.00 0.00 36.92 2.15
210 211 9.092876 GCTAGTAAATGAAGCCATCTATGATAC 57.907 37.037 0.00 0.00 31.40 2.24
282 283 7.588497 TCATATGCATGACACTAGTCTAAGT 57.412 36.000 10.16 0.00 45.20 2.24
283 284 8.011844 TCATATGCATGACACTAGTCTAAGTT 57.988 34.615 10.16 0.00 45.20 2.66
284 285 9.131791 TCATATGCATGACACTAGTCTAAGTTA 57.868 33.333 10.16 0.00 45.20 2.24
285 286 9.186323 CATATGCATGACACTAGTCTAAGTTAC 57.814 37.037 10.16 0.00 45.20 2.50
286 287 6.835819 TGCATGACACTAGTCTAAGTTACT 57.164 37.500 0.00 0.00 45.20 2.24
287 288 6.853720 TGCATGACACTAGTCTAAGTTACTC 58.146 40.000 0.00 0.00 45.20 2.59
288 289 6.127703 TGCATGACACTAGTCTAAGTTACTCC 60.128 42.308 0.00 0.00 45.20 3.85
289 290 6.680872 GCATGACACTAGTCTAAGTTACTCCC 60.681 46.154 0.00 0.00 45.20 4.30
290 291 5.259632 TGACACTAGTCTAAGTTACTCCCC 58.740 45.833 0.00 0.00 45.20 4.81
291 292 5.222192 TGACACTAGTCTAAGTTACTCCCCA 60.222 44.000 0.00 0.00 45.20 4.96
292 293 5.015515 ACACTAGTCTAAGTTACTCCCCAC 58.984 45.833 0.00 0.00 0.00 4.61
293 294 5.222296 ACACTAGTCTAAGTTACTCCCCACT 60.222 44.000 0.00 0.00 0.00 4.00
294 295 6.012157 ACACTAGTCTAAGTTACTCCCCACTA 60.012 42.308 0.00 0.00 0.00 2.74
295 296 7.061688 CACTAGTCTAAGTTACTCCCCACTAT 58.938 42.308 0.00 0.00 0.00 2.12
296 297 7.013464 CACTAGTCTAAGTTACTCCCCACTATG 59.987 44.444 0.00 0.00 0.00 2.23
297 298 6.088541 AGTCTAAGTTACTCCCCACTATGA 57.911 41.667 0.00 0.00 0.00 2.15
298 299 5.892686 AGTCTAAGTTACTCCCCACTATGAC 59.107 44.000 0.00 0.00 0.00 3.06
299 300 5.068855 GTCTAAGTTACTCCCCACTATGACC 59.931 48.000 0.00 0.00 0.00 4.02
300 301 3.484953 AGTTACTCCCCACTATGACCA 57.515 47.619 0.00 0.00 0.00 4.02
301 302 3.375699 AGTTACTCCCCACTATGACCAG 58.624 50.000 0.00 0.00 0.00 4.00
397 398 2.070783 GGAATCCGCAACGAAACACTA 58.929 47.619 0.00 0.00 0.00 2.74
524 525 3.512516 GCGCAACATGCCTCCCTC 61.513 66.667 0.30 0.00 41.12 4.30
528 529 1.693640 CAACATGCCTCCCTCCCTT 59.306 57.895 0.00 0.00 0.00 3.95
529 530 0.394899 CAACATGCCTCCCTCCCTTC 60.395 60.000 0.00 0.00 0.00 3.46
530 531 1.575447 AACATGCCTCCCTCCCTTCC 61.575 60.000 0.00 0.00 0.00 3.46
531 532 1.695597 CATGCCTCCCTCCCTTCCT 60.696 63.158 0.00 0.00 0.00 3.36
532 533 0.400525 CATGCCTCCCTCCCTTCCTA 60.401 60.000 0.00 0.00 0.00 2.94
533 534 0.346932 ATGCCTCCCTCCCTTCCTAA 59.653 55.000 0.00 0.00 0.00 2.69
534 535 0.620700 TGCCTCCCTCCCTTCCTAAC 60.621 60.000 0.00 0.00 0.00 2.34
537 538 1.002533 TCCCTCCCTTCCTAACCCG 59.997 63.158 0.00 0.00 0.00 5.28
565 567 4.394712 GCGCAGGCAGGTGGTACT 62.395 66.667 0.30 0.00 39.62 2.73
568 570 1.073199 GCAGGCAGGTGGTACTGTT 59.927 57.895 0.00 0.00 40.59 3.16
579 581 1.271325 TGGTACTGTTCTACGGACCGA 60.271 52.381 23.38 3.17 31.55 4.69
611 613 4.899239 CACGGGCTCGGATGCTCC 62.899 72.222 12.42 0.00 41.39 4.70
614 616 3.934962 GGGCTCGGATGCTCCCTC 61.935 72.222 0.00 0.00 35.87 4.30
615 617 3.157252 GGCTCGGATGCTCCCTCA 61.157 66.667 0.00 0.00 31.13 3.86
616 618 2.420890 GCTCGGATGCTCCCTCAG 59.579 66.667 0.00 0.00 31.13 3.35
617 619 2.430610 GCTCGGATGCTCCCTCAGT 61.431 63.158 0.00 0.00 31.13 3.41
618 620 1.739049 CTCGGATGCTCCCTCAGTC 59.261 63.158 0.00 0.00 31.13 3.51
708 710 2.278857 CCTTCATCCGACGGCTCG 60.279 66.667 9.66 0.00 39.83 5.03
710 712 4.847516 TTCATCCGACGGCTCGCG 62.848 66.667 9.66 0.00 38.70 5.87
767 769 1.447838 CATCCGACGGTCAACCAGG 60.448 63.158 14.79 0.81 35.14 4.45
774 776 4.048470 GGTCAACCAGGCCCCCTC 62.048 72.222 0.00 0.00 35.31 4.30
775 777 4.048470 GTCAACCAGGCCCCCTCC 62.048 72.222 0.00 0.00 0.00 4.30
776 778 4.285790 TCAACCAGGCCCCCTCCT 62.286 66.667 0.00 0.00 36.78 3.69
777 779 3.732849 CAACCAGGCCCCCTCCTC 61.733 72.222 0.00 0.00 33.25 3.71
893 896 2.353889 CGAGCTCATGTTCCATTCCAAG 59.646 50.000 15.40 0.00 0.00 3.61
944 948 2.892425 GATCAGCCGAACCAGCCG 60.892 66.667 0.00 0.00 0.00 5.52
1086 1407 2.766828 GGAGCTGGTGATGTACTACCTT 59.233 50.000 13.22 2.94 37.84 3.50
1293 1614 2.675371 GGGTACTGGAAGGCCACC 59.325 66.667 5.01 9.00 39.92 4.61
1484 1805 2.666812 GGTAACCACCTGACCCCG 59.333 66.667 0.00 0.00 42.11 5.73
1485 1806 2.219164 GGTAACCACCTGACCCCGT 61.219 63.158 0.00 0.00 42.11 5.28
1486 1807 1.294459 GTAACCACCTGACCCCGTC 59.706 63.158 0.00 0.00 0.00 4.79
1487 1808 1.156803 TAACCACCTGACCCCGTCT 59.843 57.895 0.00 0.00 33.15 4.18
1519 1857 4.849329 GCGCTGATGCTTGGCTGC 62.849 66.667 0.00 0.00 36.97 5.25
1565 1903 4.382306 GCATTAGCGAGAGATTTACTGC 57.618 45.455 0.00 0.00 0.00 4.40
1576 1914 6.198403 CGAGAGATTTACTGCGCATTTAGTAA 59.802 38.462 12.24 13.35 37.55 2.24
1579 1917 7.011482 AGAGATTTACTGCGCATTTAGTAAAGG 59.989 37.037 26.43 10.56 46.47 3.11
1617 1955 6.317789 TCTTTCTTGAAATAGCAAGTGGTG 57.682 37.500 0.00 0.00 44.30 4.17
1637 1975 6.631636 GTGGTGTTTTAGCTTTAGAAAAGTCG 59.368 38.462 0.00 0.00 0.00 4.18
1677 2015 1.701704 GTGGCCATGCGAAAAAGAAG 58.298 50.000 9.72 0.00 0.00 2.85
1678 2016 0.602562 TGGCCATGCGAAAAAGAAGG 59.397 50.000 0.00 0.00 0.00 3.46
1679 2017 0.108662 GGCCATGCGAAAAAGAAGGG 60.109 55.000 0.00 0.00 0.00 3.95
1681 2019 1.544724 CCATGCGAAAAAGAAGGGGA 58.455 50.000 0.00 0.00 0.00 4.81
1685 2024 3.726291 TGCGAAAAAGAAGGGGAAAAG 57.274 42.857 0.00 0.00 0.00 2.27
1689 2028 1.729586 AAAAGAAGGGGAAAAGGGGC 58.270 50.000 0.00 0.00 0.00 5.80
1691 2030 2.038975 GAAGGGGAAAAGGGGCCC 59.961 66.667 17.12 17.12 43.91 5.80
1703 2042 3.688159 GGGCCCAAGTTGCAGCAG 61.688 66.667 19.95 0.00 0.00 4.24
1704 2043 4.368543 GGCCCAAGTTGCAGCAGC 62.369 66.667 15.45 0.00 42.57 5.25
1877 2228 4.045636 ACACTAGCTTTGGTTGCTTTTG 57.954 40.909 0.00 0.00 41.46 2.44
1880 2231 5.163416 ACACTAGCTTTGGTTGCTTTTGAAT 60.163 36.000 0.00 0.00 41.46 2.57
1882 2233 5.754890 ACTAGCTTTGGTTGCTTTTGAATTG 59.245 36.000 0.00 0.00 41.46 2.32
1883 2234 4.516323 AGCTTTGGTTGCTTTTGAATTGT 58.484 34.783 0.00 0.00 37.52 2.71
1884 2235 4.943093 AGCTTTGGTTGCTTTTGAATTGTT 59.057 33.333 0.00 0.00 37.52 2.83
1885 2236 5.415389 AGCTTTGGTTGCTTTTGAATTGTTT 59.585 32.000 0.00 0.00 37.52 2.83
1886 2237 6.072008 AGCTTTGGTTGCTTTTGAATTGTTTT 60.072 30.769 0.00 0.00 37.52 2.43
1887 2238 6.585702 GCTTTGGTTGCTTTTGAATTGTTTTT 59.414 30.769 0.00 0.00 0.00 1.94
1934 2290 4.668289 GAGACTTTTCTCCTCGTGATCTC 58.332 47.826 0.00 0.00 42.42 2.75
1984 2340 2.163818 TCTACAACAAGAAGGGCGTG 57.836 50.000 0.00 0.00 0.00 5.34
2284 2640 3.528370 CCCGACTTCCCGAGCGAT 61.528 66.667 0.00 0.00 0.00 4.58
2362 2718 3.078196 TGGGGCGGCGTCATAGAA 61.078 61.111 15.59 0.00 0.00 2.10
2470 2826 0.038251 TGCTCACGTACCTGCAGAAG 60.038 55.000 17.39 1.02 0.00 2.85
2520 2877 1.383803 CCCTCCTCCTTAGCAGCCT 60.384 63.158 0.00 0.00 0.00 4.58
2557 2915 2.163010 TCAGGTCTCGTGTAATTCGGTC 59.837 50.000 0.00 0.00 0.00 4.79
2624 3002 4.498009 GGATTAACCCGCACAAATCTGATG 60.498 45.833 0.00 0.00 0.00 3.07
2672 3056 0.383949 TGCAGAGTTTTCCCAAACGC 59.616 50.000 0.00 0.00 46.14 4.84
2678 3062 2.223745 AGTTTTCCCAAACGCACGTAT 58.776 42.857 0.00 0.00 46.14 3.06
2721 3105 1.350684 GGTTTTGGATGGCATTTGGGT 59.649 47.619 0.00 0.00 0.00 4.51
2842 3230 5.803461 GTCGGGTAATATTTCAACTTTTGCC 59.197 40.000 0.00 0.00 0.00 4.52
2856 3250 3.749609 ACTTTTGCCGTGGTAGTACATTC 59.250 43.478 2.06 0.00 0.00 2.67
2857 3251 2.389962 TTGCCGTGGTAGTACATTCC 57.610 50.000 2.06 0.00 0.00 3.01
2858 3252 1.268066 TGCCGTGGTAGTACATTCCA 58.732 50.000 2.06 0.00 0.00 3.53
2859 3253 1.624312 TGCCGTGGTAGTACATTCCAA 59.376 47.619 2.06 0.00 32.82 3.53
2889 3290 5.379732 AGAAGTAGAGGTCGAACAAGAAG 57.620 43.478 1.87 0.00 0.00 2.85
2942 3343 4.011698 TGGATCGTGTTGTGTAGCTAGTA 58.988 43.478 0.00 0.00 0.00 1.82
2943 3344 4.095932 TGGATCGTGTTGTGTAGCTAGTAG 59.904 45.833 0.00 0.00 0.00 2.57
2944 3345 4.096081 GGATCGTGTTGTGTAGCTAGTAGT 59.904 45.833 0.00 0.00 0.00 2.73
2951 3352 5.123502 TGTTGTGTAGCTAGTAGTGTAGAGC 59.876 44.000 0.00 0.00 35.07 4.09
2986 3388 9.974750 GTTATTATTTTCTTCTCGAAGGACTTG 57.025 33.333 6.81 0.00 38.88 3.16
3061 3463 6.372937 TGTGTAATTGTAATTGCGAAGATGGA 59.627 34.615 0.27 0.00 34.29 3.41
3075 3477 4.214332 CGAAGATGGATGTGATAGAGTCGA 59.786 45.833 0.00 0.00 0.00 4.20
3095 3615 0.033504 TTTCAGTGGTGGTCTCTCGC 59.966 55.000 0.00 0.00 0.00 5.03
3109 3629 1.006102 CTCGCGTGACCTGGAAAGT 60.006 57.895 5.77 0.00 0.00 2.66
3116 3637 3.243401 GCGTGACCTGGAAAGTCAATTTT 60.243 43.478 0.00 0.00 45.37 1.82
3215 3737 1.800315 CTGATGCTTGCTTGCACGC 60.800 57.895 15.62 15.62 46.33 5.34
3246 4018 0.675633 GATGAGAGAGAGAGGCTGCC 59.324 60.000 11.65 11.65 0.00 4.85
3254 4026 3.308014 GAGAGGCTGCCGCTCTGTT 62.308 63.158 35.59 12.55 44.99 3.16
3270 4042 5.277297 CGCTCTGTTCTTTGTGAATTGTGTA 60.277 40.000 0.00 0.00 36.99 2.90
3272 4044 6.580041 GCTCTGTTCTTTGTGAATTGTGTATG 59.420 38.462 0.00 0.00 36.99 2.39
3273 4045 7.566760 TCTGTTCTTTGTGAATTGTGTATGT 57.433 32.000 0.00 0.00 36.99 2.29
3274 4046 7.416817 TCTGTTCTTTGTGAATTGTGTATGTG 58.583 34.615 0.00 0.00 36.99 3.21
3275 4047 5.976534 TGTTCTTTGTGAATTGTGTATGTGC 59.023 36.000 0.00 0.00 36.99 4.57
3276 4048 5.764487 TCTTTGTGAATTGTGTATGTGCA 57.236 34.783 0.00 0.00 0.00 4.57
3277 4049 6.330004 TCTTTGTGAATTGTGTATGTGCAT 57.670 33.333 0.00 0.00 0.00 3.96
3325 4097 1.153289 ATGGAGAGACGCCATGCAC 60.153 57.895 6.25 0.00 42.19 4.57
3342 4114 1.411394 CACGCATGCCACTTTTGAAG 58.589 50.000 13.15 0.00 0.00 3.02
3343 4115 0.314935 ACGCATGCCACTTTTGAAGG 59.685 50.000 13.15 0.00 0.00 3.46
3344 4116 0.388907 CGCATGCCACTTTTGAAGGG 60.389 55.000 13.15 0.00 0.00 3.95
3348 4120 4.174305 CCACTTTTGAAGGGGCGT 57.826 55.556 0.00 0.00 46.91 5.68
3353 4129 0.447801 CTTTTGAAGGGGCGTCATCG 59.552 55.000 0.00 0.00 40.37 3.84
3356 4132 2.582498 GAAGGGGCGTCATCGTCG 60.582 66.667 0.00 0.00 43.10 5.12
3364 4140 0.179207 GCGTCATCGTCGTGTACTCA 60.179 55.000 0.00 0.00 39.49 3.41
3436 4212 0.950116 GATGTATGCCCTGCTGAAGC 59.050 55.000 0.00 0.00 42.50 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.148104 GTGTAGTTTCAGGTCGATAATTTAACT 57.852 33.333 0.00 0.00 0.00 2.24
10 11 8.106348 CGTGTAGTTTCAGGTCGATAATTTAAC 58.894 37.037 0.00 0.00 0.00 2.01
11 12 8.028354 TCGTGTAGTTTCAGGTCGATAATTTAA 58.972 33.333 0.00 0.00 0.00 1.52
12 13 7.537715 TCGTGTAGTTTCAGGTCGATAATTTA 58.462 34.615 0.00 0.00 0.00 1.40
13 14 6.392354 TCGTGTAGTTTCAGGTCGATAATTT 58.608 36.000 0.00 0.00 0.00 1.82
14 15 5.957798 TCGTGTAGTTTCAGGTCGATAATT 58.042 37.500 0.00 0.00 0.00 1.40
15 16 5.571784 TCGTGTAGTTTCAGGTCGATAAT 57.428 39.130 0.00 0.00 0.00 1.28
16 17 5.375417 TTCGTGTAGTTTCAGGTCGATAA 57.625 39.130 0.00 0.00 0.00 1.75
17 18 5.124297 TCATTCGTGTAGTTTCAGGTCGATA 59.876 40.000 0.00 0.00 0.00 2.92
18 19 3.928727 TTCGTGTAGTTTCAGGTCGAT 57.071 42.857 0.00 0.00 0.00 3.59
19 20 3.253921 TCATTCGTGTAGTTTCAGGTCGA 59.746 43.478 0.00 0.00 0.00 4.20
20 21 3.364023 GTCATTCGTGTAGTTTCAGGTCG 59.636 47.826 0.00 0.00 0.00 4.79
21 22 4.557205 AGTCATTCGTGTAGTTTCAGGTC 58.443 43.478 0.00 0.00 0.00 3.85
22 23 4.602340 AGTCATTCGTGTAGTTTCAGGT 57.398 40.909 0.00 0.00 0.00 4.00
23 24 7.758076 TGTATAAGTCATTCGTGTAGTTTCAGG 59.242 37.037 0.00 0.00 0.00 3.86
24 25 8.584600 GTGTATAAGTCATTCGTGTAGTTTCAG 58.415 37.037 0.00 0.00 0.00 3.02
25 26 7.543172 GGTGTATAAGTCATTCGTGTAGTTTCA 59.457 37.037 0.00 0.00 0.00 2.69
26 27 7.253552 CGGTGTATAAGTCATTCGTGTAGTTTC 60.254 40.741 0.00 0.00 0.00 2.78
27 28 6.529125 CGGTGTATAAGTCATTCGTGTAGTTT 59.471 38.462 0.00 0.00 0.00 2.66
28 29 6.032094 CGGTGTATAAGTCATTCGTGTAGTT 58.968 40.000 0.00 0.00 0.00 2.24
29 30 5.449588 CCGGTGTATAAGTCATTCGTGTAGT 60.450 44.000 0.00 0.00 0.00 2.73
30 31 4.974275 CCGGTGTATAAGTCATTCGTGTAG 59.026 45.833 0.00 0.00 0.00 2.74
31 32 4.202040 CCCGGTGTATAAGTCATTCGTGTA 60.202 45.833 0.00 0.00 0.00 2.90
32 33 3.429822 CCCGGTGTATAAGTCATTCGTGT 60.430 47.826 0.00 0.00 0.00 4.49
33 34 3.120792 CCCGGTGTATAAGTCATTCGTG 58.879 50.000 0.00 0.00 0.00 4.35
34 35 3.025978 TCCCGGTGTATAAGTCATTCGT 58.974 45.455 0.00 0.00 0.00 3.85
35 36 3.378339 GTCCCGGTGTATAAGTCATTCG 58.622 50.000 0.00 0.00 0.00 3.34
36 37 3.378339 CGTCCCGGTGTATAAGTCATTC 58.622 50.000 0.00 0.00 0.00 2.67
37 38 2.101917 CCGTCCCGGTGTATAAGTCATT 59.898 50.000 0.00 0.00 42.73 2.57
38 39 1.684983 CCGTCCCGGTGTATAAGTCAT 59.315 52.381 0.00 0.00 42.73 3.06
39 40 1.105457 CCGTCCCGGTGTATAAGTCA 58.895 55.000 0.00 0.00 42.73 3.41
40 41 3.953201 CCGTCCCGGTGTATAAGTC 57.047 57.895 0.00 0.00 42.73 3.01
51 52 0.107456 TAGCTACTACCTCCGTCCCG 59.893 60.000 0.00 0.00 0.00 5.14
52 53 1.142667 ACTAGCTACTACCTCCGTCCC 59.857 57.143 0.00 0.00 0.00 4.46
53 54 2.636647 ACTAGCTACTACCTCCGTCC 57.363 55.000 0.00 0.00 0.00 4.79
54 55 4.446371 TGTTACTAGCTACTACCTCCGTC 58.554 47.826 0.00 0.00 0.00 4.79
55 56 4.494091 TGTTACTAGCTACTACCTCCGT 57.506 45.455 0.00 0.00 0.00 4.69
56 57 5.122082 GCTATGTTACTAGCTACTACCTCCG 59.878 48.000 0.00 0.00 40.79 4.63
57 58 5.122082 CGCTATGTTACTAGCTACTACCTCC 59.878 48.000 10.40 0.00 41.61 4.30
58 59 5.390779 GCGCTATGTTACTAGCTACTACCTC 60.391 48.000 0.00 0.00 41.61 3.85
59 60 4.455190 GCGCTATGTTACTAGCTACTACCT 59.545 45.833 0.00 0.00 41.61 3.08
60 61 4.455190 AGCGCTATGTTACTAGCTACTACC 59.545 45.833 8.99 0.00 41.61 3.18
61 62 5.409214 AGAGCGCTATGTTACTAGCTACTAC 59.591 44.000 11.50 0.00 41.61 2.73
62 63 5.549347 AGAGCGCTATGTTACTAGCTACTA 58.451 41.667 11.50 0.00 41.61 1.82
63 64 4.391155 AGAGCGCTATGTTACTAGCTACT 58.609 43.478 11.50 0.00 41.61 2.57
64 65 4.752661 AGAGCGCTATGTTACTAGCTAC 57.247 45.455 11.50 0.00 41.61 3.58
65 66 4.083961 CGAAGAGCGCTATGTTACTAGCTA 60.084 45.833 11.50 0.00 41.61 3.32
66 67 3.304123 CGAAGAGCGCTATGTTACTAGCT 60.304 47.826 11.50 0.00 41.61 3.32
67 68 2.974536 CGAAGAGCGCTATGTTACTAGC 59.025 50.000 11.50 0.00 40.61 3.42
68 69 4.469625 TCGAAGAGCGCTATGTTACTAG 57.530 45.455 11.50 0.15 40.61 2.57
83 84 6.092670 CCACATAAGCAGAATTTTCTCGAAGA 59.907 38.462 0.00 0.00 34.74 2.87
84 85 6.253746 CCACATAAGCAGAATTTTCTCGAAG 58.746 40.000 0.00 0.00 34.74 3.79
85 86 5.391950 GCCACATAAGCAGAATTTTCTCGAA 60.392 40.000 0.00 0.00 34.74 3.71
86 87 4.094887 GCCACATAAGCAGAATTTTCTCGA 59.905 41.667 0.00 0.00 34.74 4.04
87 88 4.142622 TGCCACATAAGCAGAATTTTCTCG 60.143 41.667 0.00 0.00 34.74 4.04
88 89 5.314923 TGCCACATAAGCAGAATTTTCTC 57.685 39.130 0.00 0.00 34.74 2.87
89 90 5.244626 ACTTGCCACATAAGCAGAATTTTCT 59.755 36.000 0.00 0.00 42.17 2.52
90 91 5.473039 ACTTGCCACATAAGCAGAATTTTC 58.527 37.500 0.00 0.00 42.17 2.29
91 92 5.473066 ACTTGCCACATAAGCAGAATTTT 57.527 34.783 0.00 0.00 42.17 1.82
92 93 6.588719 TTACTTGCCACATAAGCAGAATTT 57.411 33.333 0.00 0.00 42.17 1.82
93 94 6.780457 ATTACTTGCCACATAAGCAGAATT 57.220 33.333 0.00 0.00 42.17 2.17
94 95 6.780457 AATTACTTGCCACATAAGCAGAAT 57.220 33.333 0.00 0.00 42.17 2.40
95 96 7.695480 TTAATTACTTGCCACATAAGCAGAA 57.305 32.000 0.00 0.00 42.17 3.02
96 97 7.555914 TCATTAATTACTTGCCACATAAGCAGA 59.444 33.333 0.00 0.00 42.17 4.26
97 98 7.706159 TCATTAATTACTTGCCACATAAGCAG 58.294 34.615 0.00 0.00 42.17 4.24
98 99 7.555914 TCTCATTAATTACTTGCCACATAAGCA 59.444 33.333 0.00 0.00 38.81 3.91
99 100 7.930217 TCTCATTAATTACTTGCCACATAAGC 58.070 34.615 0.00 0.00 0.00 3.09
100 101 8.562892 CCTCTCATTAATTACTTGCCACATAAG 58.437 37.037 0.00 0.00 0.00 1.73
101 102 8.052748 ACCTCTCATTAATTACTTGCCACATAA 58.947 33.333 0.00 0.00 0.00 1.90
102 103 7.498900 CACCTCTCATTAATTACTTGCCACATA 59.501 37.037 0.00 0.00 0.00 2.29
103 104 6.319658 CACCTCTCATTAATTACTTGCCACAT 59.680 38.462 0.00 0.00 0.00 3.21
104 105 5.647658 CACCTCTCATTAATTACTTGCCACA 59.352 40.000 0.00 0.00 0.00 4.17
105 106 5.066505 CCACCTCTCATTAATTACTTGCCAC 59.933 44.000 0.00 0.00 0.00 5.01
106 107 5.192927 CCACCTCTCATTAATTACTTGCCA 58.807 41.667 0.00 0.00 0.00 4.92
107 108 5.193679 ACCACCTCTCATTAATTACTTGCC 58.806 41.667 0.00 0.00 0.00 4.52
108 109 7.335924 TGTTACCACCTCTCATTAATTACTTGC 59.664 37.037 0.00 0.00 0.00 4.01
109 110 8.786826 TGTTACCACCTCTCATTAATTACTTG 57.213 34.615 0.00 0.00 0.00 3.16
140 141 8.947657 CTTGGAAAGCGCTATGTTACAGTAACA 61.948 40.741 25.09 25.09 44.55 2.41
141 142 4.628333 TGGAAAGCGCTATGTTACAGTAAC 59.372 41.667 12.05 15.58 39.11 2.50
142 143 4.823157 TGGAAAGCGCTATGTTACAGTAA 58.177 39.130 12.05 0.00 0.00 2.24
143 144 4.459390 TGGAAAGCGCTATGTTACAGTA 57.541 40.909 12.05 0.00 0.00 2.74
144 145 3.328382 TGGAAAGCGCTATGTTACAGT 57.672 42.857 12.05 0.00 0.00 3.55
145 146 3.932710 TCTTGGAAAGCGCTATGTTACAG 59.067 43.478 12.05 3.17 45.70 2.74
146 147 3.682858 GTCTTGGAAAGCGCTATGTTACA 59.317 43.478 12.05 5.56 45.70 2.41
147 148 3.682858 TGTCTTGGAAAGCGCTATGTTAC 59.317 43.478 12.05 2.15 45.70 2.50
148 149 3.932822 TGTCTTGGAAAGCGCTATGTTA 58.067 40.909 12.05 0.00 45.70 2.41
149 150 2.778299 TGTCTTGGAAAGCGCTATGTT 58.222 42.857 12.05 0.00 45.70 2.71
150 151 2.472695 TGTCTTGGAAAGCGCTATGT 57.527 45.000 12.05 0.00 45.70 2.29
151 152 3.002791 TCTTGTCTTGGAAAGCGCTATG 58.997 45.455 12.05 0.00 45.70 2.23
152 153 3.334583 TCTTGTCTTGGAAAGCGCTAT 57.665 42.857 12.05 0.00 45.70 2.97
153 154 2.831685 TCTTGTCTTGGAAAGCGCTA 57.168 45.000 12.05 0.00 45.70 4.26
154 155 1.808945 CATCTTGTCTTGGAAAGCGCT 59.191 47.619 2.64 2.64 45.70 5.92
155 156 1.806542 TCATCTTGTCTTGGAAAGCGC 59.193 47.619 0.00 0.00 45.70 5.92
156 157 3.070018 ACTCATCTTGTCTTGGAAAGCG 58.930 45.455 0.00 0.00 45.70 4.68
157 158 4.322567 AGACTCATCTTGTCTTGGAAAGC 58.677 43.478 0.00 0.00 45.70 3.51
158 159 7.326454 TCATAGACTCATCTTGTCTTGGAAAG 58.674 38.462 1.67 0.00 41.45 2.62
159 160 7.244886 TCATAGACTCATCTTGTCTTGGAAA 57.755 36.000 1.67 0.00 41.45 3.13
160 161 6.629068 GCTCATAGACTCATCTTGTCTTGGAA 60.629 42.308 1.67 0.00 41.45 3.53
161 162 5.163468 GCTCATAGACTCATCTTGTCTTGGA 60.163 44.000 1.67 0.74 41.45 3.53
162 163 5.049167 GCTCATAGACTCATCTTGTCTTGG 58.951 45.833 1.67 0.00 41.45 3.61
163 164 5.904941 AGCTCATAGACTCATCTTGTCTTG 58.095 41.667 1.67 2.00 41.45 3.02
164 165 6.833416 ACTAGCTCATAGACTCATCTTGTCTT 59.167 38.462 0.00 0.00 41.45 3.01
165 166 6.364701 ACTAGCTCATAGACTCATCTTGTCT 58.635 40.000 0.00 0.00 45.48 3.41
166 167 6.633500 ACTAGCTCATAGACTCATCTTGTC 57.367 41.667 0.00 0.00 36.29 3.18
167 168 8.526667 TTTACTAGCTCATAGACTCATCTTGT 57.473 34.615 0.00 0.00 36.29 3.16
168 169 9.409312 CATTTACTAGCTCATAGACTCATCTTG 57.591 37.037 0.00 0.00 36.29 3.02
169 170 9.360901 TCATTTACTAGCTCATAGACTCATCTT 57.639 33.333 0.00 0.00 36.29 2.40
170 171 8.932434 TCATTTACTAGCTCATAGACTCATCT 57.068 34.615 0.00 0.00 39.15 2.90
171 172 9.624697 CTTCATTTACTAGCTCATAGACTCATC 57.375 37.037 0.00 0.00 35.30 2.92
172 173 8.087750 GCTTCATTTACTAGCTCATAGACTCAT 58.912 37.037 0.00 0.00 35.30 2.90
173 174 7.429633 GCTTCATTTACTAGCTCATAGACTCA 58.570 38.462 0.00 0.00 35.30 3.41
174 175 6.866248 GGCTTCATTTACTAGCTCATAGACTC 59.134 42.308 0.00 0.00 35.30 3.36
175 176 6.325028 TGGCTTCATTTACTAGCTCATAGACT 59.675 38.462 0.00 0.00 35.30 3.24
176 177 6.516718 TGGCTTCATTTACTAGCTCATAGAC 58.483 40.000 0.00 0.00 35.30 2.59
177 178 6.731292 TGGCTTCATTTACTAGCTCATAGA 57.269 37.500 0.00 0.00 35.30 1.98
178 179 7.385267 AGATGGCTTCATTTACTAGCTCATAG 58.615 38.462 0.00 0.00 37.53 2.23
179 180 7.308450 AGATGGCTTCATTTACTAGCTCATA 57.692 36.000 0.00 0.00 35.30 2.15
180 181 6.185114 AGATGGCTTCATTTACTAGCTCAT 57.815 37.500 0.00 0.00 35.30 2.90
181 182 5.620738 AGATGGCTTCATTTACTAGCTCA 57.379 39.130 0.00 0.00 35.30 4.26
182 183 7.382110 TCATAGATGGCTTCATTTACTAGCTC 58.618 38.462 0.00 0.00 35.30 4.09
183 184 7.308450 TCATAGATGGCTTCATTTACTAGCT 57.692 36.000 3.03 0.00 35.30 3.32
184 185 9.092876 GTATCATAGATGGCTTCATTTACTAGC 57.907 37.037 3.03 0.00 0.00 3.42
258 259 7.588497 ACTTAGACTAGTGTCATGCATATGA 57.412 36.000 6.97 0.00 45.20 2.15
259 260 9.186323 GTAACTTAGACTAGTGTCATGCATATG 57.814 37.037 0.00 0.00 45.20 1.78
260 261 9.137459 AGTAACTTAGACTAGTGTCATGCATAT 57.863 33.333 0.00 0.00 45.20 1.78
261 262 8.521170 AGTAACTTAGACTAGTGTCATGCATA 57.479 34.615 0.00 0.00 45.20 3.14
262 263 7.411486 AGTAACTTAGACTAGTGTCATGCAT 57.589 36.000 0.00 0.00 45.20 3.96
263 264 6.127703 GGAGTAACTTAGACTAGTGTCATGCA 60.128 42.308 0.00 0.00 45.20 3.96
264 265 6.267070 GGAGTAACTTAGACTAGTGTCATGC 58.733 44.000 0.00 0.00 45.20 4.06
265 266 6.183360 GGGGAGTAACTTAGACTAGTGTCATG 60.183 46.154 0.00 0.00 45.20 3.07
266 267 5.892686 GGGGAGTAACTTAGACTAGTGTCAT 59.107 44.000 0.00 0.00 45.20 3.06
267 268 5.222192 TGGGGAGTAACTTAGACTAGTGTCA 60.222 44.000 0.00 0.00 45.20 3.58
268 269 5.125257 GTGGGGAGTAACTTAGACTAGTGTC 59.875 48.000 0.00 0.00 43.22 3.67
269 270 5.015515 GTGGGGAGTAACTTAGACTAGTGT 58.984 45.833 0.00 0.00 0.00 3.55
270 271 5.262804 AGTGGGGAGTAACTTAGACTAGTG 58.737 45.833 0.00 0.00 0.00 2.74
271 272 5.533333 AGTGGGGAGTAACTTAGACTAGT 57.467 43.478 0.00 0.00 0.00 2.57
272 273 7.229106 GTCATAGTGGGGAGTAACTTAGACTAG 59.771 44.444 0.00 0.00 31.58 2.57
273 274 7.059156 GTCATAGTGGGGAGTAACTTAGACTA 58.941 42.308 0.00 0.00 31.58 2.59
274 275 5.892686 GTCATAGTGGGGAGTAACTTAGACT 59.107 44.000 0.00 0.00 31.58 3.24
275 276 5.068855 GGTCATAGTGGGGAGTAACTTAGAC 59.931 48.000 0.00 0.00 32.58 2.59
276 277 5.206587 GGTCATAGTGGGGAGTAACTTAGA 58.793 45.833 0.00 0.00 0.00 2.10
277 278 4.960469 TGGTCATAGTGGGGAGTAACTTAG 59.040 45.833 0.00 0.00 0.00 2.18
278 279 4.950361 TGGTCATAGTGGGGAGTAACTTA 58.050 43.478 0.00 0.00 0.00 2.24
279 280 3.775316 CTGGTCATAGTGGGGAGTAACTT 59.225 47.826 0.00 0.00 0.00 2.66
280 281 3.375699 CTGGTCATAGTGGGGAGTAACT 58.624 50.000 0.00 0.00 0.00 2.24
281 282 2.158943 GCTGGTCATAGTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
282 283 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
283 284 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
284 285 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
285 286 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
286 287 0.639943 TAGGCTGGTCATAGTGGGGA 59.360 55.000 0.00 0.00 0.00 4.81
287 288 1.507140 TTAGGCTGGTCATAGTGGGG 58.493 55.000 0.00 0.00 0.00 4.96
288 289 3.545703 CTTTTAGGCTGGTCATAGTGGG 58.454 50.000 0.00 0.00 0.00 4.61
289 290 2.945668 GCTTTTAGGCTGGTCATAGTGG 59.054 50.000 0.00 0.00 0.00 4.00
290 291 3.878778 AGCTTTTAGGCTGGTCATAGTG 58.121 45.455 0.00 0.00 41.43 2.74
300 301 2.508526 CTTGTGGTCAGCTTTTAGGCT 58.491 47.619 0.00 0.00 44.10 4.58
301 302 1.541588 CCTTGTGGTCAGCTTTTAGGC 59.458 52.381 0.00 0.00 0.00 3.93
524 525 3.805497 GCCCCGGGTTAGGAAGGG 61.805 72.222 21.85 0.73 43.41 3.95
550 552 0.955919 GAACAGTACCACCTGCCTGC 60.956 60.000 0.00 0.00 35.83 4.85
560 562 1.131315 GTCGGTCCGTAGAACAGTACC 59.869 57.143 11.88 0.00 0.00 3.34
561 563 1.131315 GGTCGGTCCGTAGAACAGTAC 59.869 57.143 11.88 0.00 0.00 2.73
562 564 1.453155 GGTCGGTCCGTAGAACAGTA 58.547 55.000 11.88 0.00 0.00 2.74
563 565 1.246737 GGGTCGGTCCGTAGAACAGT 61.247 60.000 11.88 0.00 37.00 3.55
564 566 0.964358 AGGGTCGGTCCGTAGAACAG 60.964 60.000 11.88 0.00 37.00 3.16
565 567 0.962356 GAGGGTCGGTCCGTAGAACA 60.962 60.000 11.88 0.00 37.00 3.18
568 570 2.124983 CGAGGGTCGGTCCGTAGA 60.125 66.667 11.88 0.00 36.00 2.59
579 581 1.319541 CCGTGAGATATGACGAGGGT 58.680 55.000 0.00 0.00 37.81 4.34
611 613 2.801631 GGATGGCGAGGGACTGAGG 61.802 68.421 0.00 0.00 41.55 3.86
612 614 2.801631 GGGATGGCGAGGGACTGAG 61.802 68.421 0.00 0.00 41.55 3.35
613 615 2.764128 GGGATGGCGAGGGACTGA 60.764 66.667 0.00 0.00 41.55 3.41
614 616 3.083349 TGGGATGGCGAGGGACTG 61.083 66.667 0.00 0.00 41.55 3.51
616 618 2.764128 TCTGGGATGGCGAGGGAC 60.764 66.667 0.00 0.00 0.00 4.46
617 619 2.764128 GTCTGGGATGGCGAGGGA 60.764 66.667 0.00 0.00 0.00 4.20
618 620 4.227134 CGTCTGGGATGGCGAGGG 62.227 72.222 0.00 0.00 0.00 4.30
772 774 1.229984 AAGTTGGGGAGGGGAGGAG 60.230 63.158 0.00 0.00 0.00 3.69
773 775 1.541368 CAAGTTGGGGAGGGGAGGA 60.541 63.158 0.00 0.00 0.00 3.71
774 776 3.090765 CAAGTTGGGGAGGGGAGG 58.909 66.667 0.00 0.00 0.00 4.30
775 777 2.356667 GCAAGTTGGGGAGGGGAG 59.643 66.667 4.75 0.00 0.00 4.30
776 778 2.451493 TGCAAGTTGGGGAGGGGA 60.451 61.111 4.75 0.00 0.00 4.81
777 779 2.283173 GTGCAAGTTGGGGAGGGG 60.283 66.667 4.75 0.00 0.00 4.79
778 780 2.672996 CGTGCAAGTTGGGGAGGG 60.673 66.667 4.75 0.00 0.00 4.30
840 843 2.034305 CCGTATATATAGGCGGAGGTGC 59.966 54.545 17.80 0.00 46.33 5.01
841 844 2.621998 CCCGTATATATAGGCGGAGGTG 59.378 54.545 22.01 7.80 46.33 4.00
842 845 2.941480 CCCGTATATATAGGCGGAGGT 58.059 52.381 22.01 0.00 46.33 3.85
843 846 1.612463 GCCCGTATATATAGGCGGAGG 59.388 57.143 22.01 10.61 46.33 4.30
944 948 0.819666 GGGAGATTGGTTGGATCGGC 60.820 60.000 0.00 0.00 0.00 5.54
947 951 1.811941 GCTCGGGAGATTGGTTGGATC 60.812 57.143 0.00 0.00 38.80 3.36
948 952 0.181350 GCTCGGGAGATTGGTTGGAT 59.819 55.000 0.00 0.00 38.80 3.41
949 953 1.602237 GCTCGGGAGATTGGTTGGA 59.398 57.895 0.00 0.00 38.80 3.53
951 955 2.464459 GCGCTCGGGAGATTGGTTG 61.464 63.158 0.00 0.00 38.80 3.77
1478 1799 0.322636 TGACAGAGAGAGACGGGGTC 60.323 60.000 0.00 0.00 0.00 4.46
1479 1800 0.112606 TTGACAGAGAGAGACGGGGT 59.887 55.000 0.00 0.00 0.00 4.95
1482 1803 2.479389 GCAGATTGACAGAGAGAGACGG 60.479 54.545 0.00 0.00 0.00 4.79
1483 1804 2.790812 CGCAGATTGACAGAGAGAGACG 60.791 54.545 0.00 0.00 0.00 4.18
1484 1805 2.796304 CGCAGATTGACAGAGAGAGAC 58.204 52.381 0.00 0.00 0.00 3.36
1485 1806 1.133982 GCGCAGATTGACAGAGAGAGA 59.866 52.381 0.30 0.00 0.00 3.10
1486 1807 1.134753 AGCGCAGATTGACAGAGAGAG 59.865 52.381 11.47 0.00 0.00 3.20
1487 1808 1.135170 CAGCGCAGATTGACAGAGAGA 60.135 52.381 11.47 0.00 0.00 3.10
1519 1857 4.489306 AAGAGGAAGGGATTAAACGAGG 57.511 45.455 0.00 0.00 0.00 4.63
1563 1901 4.033587 GTCGATTCCTTTACTAAATGCGCA 59.966 41.667 14.96 14.96 0.00 6.09
1565 1903 4.317839 CGGTCGATTCCTTTACTAAATGCG 60.318 45.833 0.00 0.00 0.00 4.73
1576 1914 1.041437 GATCTCCCGGTCGATTCCTT 58.959 55.000 0.00 0.00 0.00 3.36
1579 1917 2.362717 AGAAAGATCTCCCGGTCGATTC 59.637 50.000 0.00 2.32 0.00 2.52
1617 1955 7.060748 GCCAATCGACTTTTCTAAAGCTAAAAC 59.939 37.037 0.00 0.00 0.00 2.43
1637 1975 0.676782 ACGCACCTAACCTGCCAATC 60.677 55.000 0.00 0.00 0.00 2.67
1677 2015 2.284625 CTTGGGCCCCTTTTCCCC 60.285 66.667 22.27 0.00 41.92 4.81
1678 2016 1.152118 AACTTGGGCCCCTTTTCCC 60.152 57.895 22.27 0.00 42.93 3.97
1679 2017 2.057830 CAACTTGGGCCCCTTTTCC 58.942 57.895 22.27 0.00 0.00 3.13
1681 2019 1.383803 TGCAACTTGGGCCCCTTTT 60.384 52.632 22.27 6.13 0.00 2.27
1702 2041 1.598130 GGGACAACTTGAGCGTGCT 60.598 57.895 0.00 0.00 0.00 4.40
1703 2042 1.166531 AAGGGACAACTTGAGCGTGC 61.167 55.000 0.00 0.00 0.00 5.34
1704 2043 1.264288 GAAAGGGACAACTTGAGCGTG 59.736 52.381 0.00 0.00 0.00 5.34
1745 2084 3.033764 TGCTTTCCGCACGTCGAC 61.034 61.111 5.18 5.18 45.47 4.20
1927 2283 1.138464 TCATCCAGCTGCAGAGATCAC 59.862 52.381 20.43 0.00 0.00 3.06
1934 2290 1.451567 CCCAGTCATCCAGCTGCAG 60.452 63.158 10.11 10.11 0.00 4.41
1984 2340 1.650536 CGTGTCGTACCGCTCGATC 60.651 63.158 0.00 0.00 39.45 3.69
2194 2550 0.798776 GCATGGAGTGGTTCGAGTTG 59.201 55.000 0.00 0.00 0.00 3.16
2284 2640 1.170919 GGCTCTCCGCGTAGTCCATA 61.171 60.000 4.92 0.00 40.44 2.74
2446 2802 1.084370 GCAGGTACGTGAGCATGTCC 61.084 60.000 19.35 1.72 0.00 4.02
2520 2877 2.631062 ACCTGACGAACATGTTAGTGGA 59.369 45.455 26.20 12.92 0.00 4.02
2557 2915 0.667993 TTGGTTTCGGAAGCTTGCAG 59.332 50.000 18.65 10.68 34.41 4.41
2672 3056 4.280174 AGGCTAACACCTGGTATATACGTG 59.720 45.833 14.31 14.31 39.13 4.49
2678 3062 3.022557 ACGAGGCTAACACCTGGTATA 57.977 47.619 0.00 0.00 45.79 1.47
2721 3105 1.429930 TCCTGGCTTGTACCAAGTCA 58.570 50.000 10.50 10.50 39.86 3.41
2842 3230 3.322211 TGGTTGGAATGTACTACCACG 57.678 47.619 5.92 0.00 34.13 4.94
2856 3250 5.581085 CGACCTCTACTTCTAATTTGGTTGG 59.419 44.000 0.00 0.00 0.00 3.77
2857 3251 6.395629 TCGACCTCTACTTCTAATTTGGTTG 58.604 40.000 0.00 0.00 0.00 3.77
2858 3252 6.600882 TCGACCTCTACTTCTAATTTGGTT 57.399 37.500 0.00 0.00 0.00 3.67
2859 3253 6.014840 TGTTCGACCTCTACTTCTAATTTGGT 60.015 38.462 0.00 0.00 0.00 3.67
2889 3290 5.901552 TGAACCCAAAACTTCAGTTTCATC 58.098 37.500 5.41 2.05 46.47 2.92
2942 3343 0.542232 ACCCGAACCAGCTCTACACT 60.542 55.000 0.00 0.00 0.00 3.55
2943 3344 0.320697 AACCCGAACCAGCTCTACAC 59.679 55.000 0.00 0.00 0.00 2.90
2944 3345 1.927487 TAACCCGAACCAGCTCTACA 58.073 50.000 0.00 0.00 0.00 2.74
2951 3352 7.465513 CGAGAAGAAAATAATAACCCGAACCAG 60.466 40.741 0.00 0.00 0.00 4.00
2986 3388 1.961277 CTGCCACGACACTGAACCC 60.961 63.158 0.00 0.00 0.00 4.11
3061 3463 5.127845 ACCACTGAAATCGACTCTATCACAT 59.872 40.000 0.00 0.00 0.00 3.21
3075 3477 1.338200 GCGAGAGACCACCACTGAAAT 60.338 52.381 0.00 0.00 0.00 2.17
3095 3615 4.568152 AAAATTGACTTTCCAGGTCACG 57.432 40.909 0.00 0.00 42.41 4.35
3203 3725 1.369689 GTGTGAGCGTGCAAGCAAG 60.370 57.895 26.30 3.58 40.15 4.01
3215 3737 2.087646 TCTCTCATCCAGTCGTGTGAG 58.912 52.381 0.00 0.00 39.47 3.51
3246 4018 3.970610 CACAATTCACAAAGAACAGAGCG 59.029 43.478 0.00 0.00 39.49 5.03
3254 4026 5.764487 TGCACATACACAATTCACAAAGA 57.236 34.783 0.00 0.00 0.00 2.52
3270 4042 4.084287 AGATTCAGAACCAACATGCACAT 58.916 39.130 0.00 0.00 0.00 3.21
3272 4044 4.697352 ACTAGATTCAGAACCAACATGCAC 59.303 41.667 0.00 0.00 0.00 4.57
3273 4045 4.910195 ACTAGATTCAGAACCAACATGCA 58.090 39.130 0.00 0.00 0.00 3.96
3274 4046 4.937620 TGACTAGATTCAGAACCAACATGC 59.062 41.667 0.00 0.00 0.00 4.06
3275 4047 6.457934 GCATGACTAGATTCAGAACCAACATG 60.458 42.308 0.00 0.00 35.09 3.21
3276 4048 5.587844 GCATGACTAGATTCAGAACCAACAT 59.412 40.000 0.00 0.00 0.00 2.71
3277 4049 4.937620 GCATGACTAGATTCAGAACCAACA 59.062 41.667 0.00 0.00 0.00 3.33
3325 4097 0.388907 CCCTTCAAAAGTGGCATGCG 60.389 55.000 12.44 0.00 0.00 4.73
3342 4114 3.055080 TACACGACGATGACGCCCC 62.055 63.158 0.00 0.00 43.96 5.80
3343 4115 1.870901 GTACACGACGATGACGCCC 60.871 63.158 0.00 0.00 43.96 6.13
3344 4116 0.860618 GAGTACACGACGATGACGCC 60.861 60.000 0.00 0.00 43.96 5.68
3345 4117 0.179207 TGAGTACACGACGATGACGC 60.179 55.000 0.00 0.00 43.96 5.19
3346 4118 2.236741 TTGAGTACACGACGATGACG 57.763 50.000 0.00 0.00 45.75 4.35
3347 4119 3.979495 ACTTTTGAGTACACGACGATGAC 59.021 43.478 0.00 0.00 0.00 3.06
3348 4120 3.978855 CACTTTTGAGTACACGACGATGA 59.021 43.478 0.00 0.00 0.00 2.92
3353 4129 4.608445 GCATCACACTTTTGAGTACACGAC 60.608 45.833 0.00 0.00 0.00 4.34
3356 4132 3.815401 AGGCATCACACTTTTGAGTACAC 59.185 43.478 0.00 0.00 0.00 2.90
3364 4140 5.452356 CCAAAAGAGAAGGCATCACACTTTT 60.452 40.000 12.63 12.63 37.97 2.27
3436 4212 0.524862 AGTGTTCCTACCTACGTGCG 59.475 55.000 0.00 0.00 0.00 5.34



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.