Multiple sequence alignment - TraesCS4A01G216500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4A01G216500 | chr4A | 100.000 | 7146 | 0 | 0 | 1 | 7146 | 515460630 | 515467775 | 0.000000e+00 | 13197.0 |
1 | TraesCS4A01G216500 | chr4A | 86.842 | 76 | 8 | 1 | 6706 | 6781 | 424369509 | 424369436 | 4.590000e-12 | 84.2 |
2 | TraesCS4A01G216500 | chr4A | 84.146 | 82 | 10 | 2 | 6707 | 6787 | 599784420 | 599784499 | 7.690000e-10 | 76.8 |
3 | TraesCS4A01G216500 | chr4D | 95.746 | 4537 | 128 | 28 | 1730 | 6258 | 66511717 | 66516196 | 0.000000e+00 | 7249.0 |
4 | TraesCS4A01G216500 | chr4D | 92.746 | 896 | 34 | 12 | 850 | 1736 | 66508281 | 66509154 | 0.000000e+00 | 1266.0 |
5 | TraesCS4A01G216500 | chr4D | 88.315 | 368 | 31 | 4 | 6779 | 7146 | 66517074 | 66517429 | 1.420000e-116 | 431.0 |
6 | TraesCS4A01G216500 | chr4D | 94.022 | 184 | 10 | 1 | 6255 | 6438 | 66516276 | 66516458 | 1.960000e-70 | 278.0 |
7 | TraesCS4A01G216500 | chr4D | 84.211 | 76 | 10 | 1 | 6706 | 6781 | 134627609 | 134627682 | 9.940000e-09 | 73.1 |
8 | TraesCS4A01G216500 | chr4B | 95.111 | 2516 | 75 | 19 | 2842 | 5348 | 97072388 | 97074864 | 0.000000e+00 | 3921.0 |
9 | TraesCS4A01G216500 | chr4B | 96.000 | 1075 | 27 | 7 | 5231 | 6304 | 97074860 | 97075919 | 0.000000e+00 | 1733.0 |
10 | TraesCS4A01G216500 | chr4B | 94.033 | 972 | 21 | 13 | 1879 | 2844 | 97071367 | 97072307 | 0.000000e+00 | 1439.0 |
11 | TraesCS4A01G216500 | chr4B | 92.342 | 888 | 36 | 12 | 988 | 1867 | 97070394 | 97071257 | 0.000000e+00 | 1234.0 |
12 | TraesCS4A01G216500 | chr4B | 93.072 | 664 | 31 | 6 | 5583 | 6246 | 129101331 | 129101979 | 0.000000e+00 | 957.0 |
13 | TraesCS4A01G216500 | chr4B | 90.547 | 603 | 34 | 6 | 6521 | 7122 | 97077043 | 97076463 | 0.000000e+00 | 776.0 |
14 | TraesCS4A01G216500 | chr4B | 81.557 | 835 | 98 | 32 | 1 | 785 | 97068818 | 97069646 | 7.820000e-179 | 638.0 |
15 | TraesCS4A01G216500 | chr4B | 95.899 | 317 | 13 | 0 | 5029 | 5345 | 129052335 | 129052651 | 1.370000e-141 | 514.0 |
16 | TraesCS4A01G216500 | chr4B | 87.626 | 396 | 31 | 8 | 6240 | 6619 | 129103786 | 129104179 | 1.830000e-120 | 444.0 |
17 | TraesCS4A01G216500 | chr4B | 85.870 | 368 | 36 | 6 | 6779 | 7146 | 129104457 | 129104808 | 1.880000e-100 | 377.0 |
18 | TraesCS4A01G216500 | chr4B | 91.852 | 270 | 16 | 1 | 6877 | 7146 | 97076454 | 97076191 | 8.750000e-99 | 372.0 |
19 | TraesCS4A01G216500 | chr4B | 92.233 | 206 | 15 | 1 | 5377 | 5582 | 129056766 | 129056970 | 2.520000e-74 | 291.0 |
20 | TraesCS4A01G216500 | chr5D | 81.006 | 179 | 30 | 3 | 4999 | 5175 | 199084484 | 199084660 | 9.670000e-29 | 139.0 |
21 | TraesCS4A01G216500 | chr1B | 85.526 | 76 | 8 | 2 | 6707 | 6781 | 29409009 | 29408936 | 7.690000e-10 | 76.8 |
22 | TraesCS4A01G216500 | chr7B | 83.333 | 78 | 10 | 2 | 6706 | 6783 | 380716531 | 380716457 | 1.290000e-07 | 69.4 |
23 | TraesCS4A01G216500 | chr7B | 81.579 | 76 | 10 | 3 | 6707 | 6781 | 519366662 | 519366734 | 7.740000e-05 | 60.2 |
24 | TraesCS4A01G216500 | chr3D | 84.286 | 70 | 9 | 1 | 6711 | 6780 | 550996777 | 550996844 | 4.630000e-07 | 67.6 |
25 | TraesCS4A01G216500 | chr2A | 82.667 | 75 | 11 | 1 | 6706 | 6780 | 509051655 | 509051727 | 1.660000e-06 | 65.8 |
26 | TraesCS4A01G216500 | chr5A | 94.872 | 39 | 2 | 0 | 412 | 450 | 453190538 | 453190500 | 2.150000e-05 | 62.1 |
27 | TraesCS4A01G216500 | chr5B | 100.000 | 29 | 0 | 0 | 6650 | 6678 | 534669902 | 534669874 | 4.000000e-03 | 54.7 |
28 | TraesCS4A01G216500 | chr2D | 92.105 | 38 | 3 | 0 | 6650 | 6687 | 138293843 | 138293806 | 4.000000e-03 | 54.7 |
29 | TraesCS4A01G216500 | chr3B | 100.000 | 28 | 0 | 0 | 6651 | 6678 | 119422000 | 119421973 | 1.300000e-02 | 52.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4A01G216500 | chr4A | 515460630 | 515467775 | 7145 | False | 13197.000000 | 13197 | 100.00000 | 1 | 7146 | 1 | chr4A.!!$F1 | 7145 |
1 | TraesCS4A01G216500 | chr4D | 66508281 | 66517429 | 9148 | False | 2306.000000 | 7249 | 92.70725 | 850 | 7146 | 4 | chr4D.!!$F2 | 6296 |
2 | TraesCS4A01G216500 | chr4B | 97068818 | 97075919 | 7101 | False | 1793.000000 | 3921 | 91.80860 | 1 | 6304 | 5 | chr4B.!!$F3 | 6303 |
3 | TraesCS4A01G216500 | chr4B | 129101331 | 129104808 | 3477 | False | 592.666667 | 957 | 88.85600 | 5583 | 7146 | 3 | chr4B.!!$F4 | 1563 |
4 | TraesCS4A01G216500 | chr4B | 97076191 | 97077043 | 852 | True | 574.000000 | 776 | 91.19950 | 6521 | 7146 | 2 | chr4B.!!$R1 | 625 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
112 | 113 | 0.036388 | TCGATGTCCAAGAACAGGGC | 60.036 | 55.0 | 0.00 | 0.0 | 31.50 | 5.19 | F |
758 | 806 | 0.041839 | CTGCGGCGCTGATTATGAAC | 60.042 | 55.0 | 33.26 | 0.0 | 0.00 | 3.18 | F |
832 | 881 | 0.529378 | GGACGTCTCCTTTAGCCGAA | 59.471 | 55.0 | 16.46 | 0.0 | 33.07 | 4.30 | F |
1450 | 2069 | 0.543410 | TTGCTCGTTCCCAGGGACTA | 60.543 | 55.0 | 8.12 | 0.0 | 36.02 | 2.59 | F |
1582 | 2202 | 1.179152 | TTTGCCACTGGATGCTCATG | 58.821 | 50.0 | 0.00 | 0.0 | 0.00 | 3.07 | F |
2719 | 6030 | 0.537188 | TCGCAGACTCCCTTGGATTC | 59.463 | 55.0 | 0.00 | 0.0 | 32.48 | 2.52 | F |
4350 | 7749 | 0.452987 | TTGCAATGGAGAATGCTCGC | 59.547 | 50.0 | 0.00 | 0.0 | 42.97 | 5.03 | F |
4518 | 7917 | 0.420272 | TTCTAGGGCCAGTTAGGGGT | 59.580 | 55.0 | 6.18 | 0.0 | 38.09 | 4.95 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1524 | 2144 | 1.016627 | AATTCATCCGACGCACATGG | 58.983 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 | R |
2668 | 5979 | 0.041982 | GGGGCCATAAAGGGTTTGGA | 59.958 | 55.000 | 4.39 | 0.00 | 38.09 | 3.53 | R |
2669 | 5980 | 0.042581 | AGGGGCCATAAAGGGTTTGG | 59.957 | 55.000 | 4.39 | 0.00 | 38.09 | 3.28 | R |
2702 | 6013 | 0.250513 | ACGAATCCAAGGGAGTCTGC | 59.749 | 55.000 | 10.54 | 0.00 | 43.62 | 4.26 | R |
3107 | 6502 | 1.003718 | GAAAGTGACCCAGGGACGG | 60.004 | 63.158 | 14.54 | 0.00 | 0.00 | 4.79 | R |
4410 | 7809 | 1.414158 | GACATCTCCCATTCCTCCGA | 58.586 | 55.000 | 0.00 | 0.00 | 0.00 | 4.55 | R |
5581 | 9107 | 0.037326 | CCAGCTTCCTCGTGCACTTA | 60.037 | 55.000 | 16.19 | 1.63 | 0.00 | 2.24 | R |
6485 | 12033 | 1.228552 | AGCCATGTCCCGCTGTTTT | 60.229 | 52.632 | 0.00 | 0.00 | 32.98 | 2.43 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
27 | 28 | 4.191485 | GTGCGAACGACGATGGCG | 62.191 | 66.667 | 0.00 | 0.32 | 45.77 | 5.69 |
38 | 39 | 3.499737 | GATGGCGGCGTGGTCAAG | 61.500 | 66.667 | 9.10 | 0.00 | 0.00 | 3.02 |
47 | 48 | 2.031516 | CGTGGTCAAGGCAGAGCTG | 61.032 | 63.158 | 0.00 | 0.00 | 36.97 | 4.24 |
49 | 50 | 2.149383 | TGGTCAAGGCAGAGCTGGT | 61.149 | 57.895 | 0.00 | 0.00 | 36.97 | 4.00 |
60 | 61 | 1.520342 | GAGCTGGTGACATCCTCGC | 60.520 | 63.158 | 0.00 | 0.00 | 41.51 | 5.03 |
65 | 66 | 1.064946 | GGTGACATCCTCGCTCTCG | 59.935 | 63.158 | 0.00 | 0.00 | 0.00 | 4.04 |
68 | 69 | 0.960861 | TGACATCCTCGCTCTCGTGT | 60.961 | 55.000 | 0.00 | 0.00 | 36.96 | 4.49 |
83 | 84 | 1.599576 | GTGTGCCTCCTCTTCCTCC | 59.400 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
85 | 86 | 1.985116 | GTGCCTCCTCTTCCTCCGT | 60.985 | 63.158 | 0.00 | 0.00 | 0.00 | 4.69 |
86 | 87 | 1.682684 | TGCCTCCTCTTCCTCCGTC | 60.683 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
90 | 91 | 4.194720 | CCTCTTCCTCCGTCGCCG | 62.195 | 72.222 | 0.00 | 0.00 | 0.00 | 6.46 |
106 | 107 | 1.445410 | CCGCGTCGATGTCCAAGAA | 60.445 | 57.895 | 4.92 | 0.00 | 0.00 | 2.52 |
112 | 113 | 0.036388 | TCGATGTCCAAGAACAGGGC | 60.036 | 55.000 | 0.00 | 0.00 | 31.50 | 5.19 |
118 | 119 | 1.376037 | CCAAGAACAGGGCGTCTCC | 60.376 | 63.158 | 0.00 | 0.00 | 0.00 | 3.71 |
130 | 131 | 2.985456 | GTCTCCCTCTGCCCACAG | 59.015 | 66.667 | 0.00 | 0.00 | 45.95 | 3.66 |
151 | 152 | 4.166011 | GTGCAACCGCCATCGCTC | 62.166 | 66.667 | 0.00 | 0.00 | 37.32 | 5.03 |
167 | 168 | 3.758088 | CTCGTGGTGGATCTCGCGG | 62.758 | 68.421 | 6.13 | 0.00 | 37.47 | 6.46 |
193 | 194 | 0.734253 | CAGTACGACAGGAGCAGCAC | 60.734 | 60.000 | 0.00 | 0.00 | 0.00 | 4.40 |
235 | 237 | 2.234913 | GACCGTCCGCCACCATAGTT | 62.235 | 60.000 | 0.00 | 0.00 | 0.00 | 2.24 |
241 | 243 | 2.112190 | TCCGCCACCATAGTTATGACA | 58.888 | 47.619 | 0.74 | 0.00 | 35.75 | 3.58 |
264 | 266 | 4.719369 | GTCGTTCGCCTGGTCGCT | 62.719 | 66.667 | 5.78 | 0.00 | 0.00 | 4.93 |
265 | 267 | 4.717629 | TCGTTCGCCTGGTCGCTG | 62.718 | 66.667 | 5.78 | 0.00 | 0.00 | 5.18 |
266 | 268 | 4.717629 | CGTTCGCCTGGTCGCTGA | 62.718 | 66.667 | 5.78 | 0.00 | 0.00 | 4.26 |
267 | 269 | 3.112709 | GTTCGCCTGGTCGCTGAC | 61.113 | 66.667 | 5.78 | 0.79 | 0.00 | 3.51 |
302 | 304 | 2.811317 | GCTGGTGCTCGTCGAAGG | 60.811 | 66.667 | 0.00 | 0.00 | 36.03 | 3.46 |
303 | 305 | 2.962569 | CTGGTGCTCGTCGAAGGA | 59.037 | 61.111 | 0.00 | 0.00 | 0.00 | 3.36 |
304 | 306 | 1.153939 | CTGGTGCTCGTCGAAGGAG | 60.154 | 63.158 | 9.74 | 9.74 | 33.54 | 3.69 |
305 | 307 | 1.867919 | CTGGTGCTCGTCGAAGGAGT | 61.868 | 60.000 | 14.21 | 0.00 | 33.01 | 3.85 |
306 | 308 | 1.153997 | GGTGCTCGTCGAAGGAGTC | 60.154 | 63.158 | 14.21 | 8.59 | 33.01 | 3.36 |
317 | 319 | 1.962321 | GAAGGAGTCGGGGAGAAGGC | 61.962 | 65.000 | 0.00 | 0.00 | 0.00 | 4.35 |
319 | 321 | 4.516195 | GAGTCGGGGAGAAGGCGC | 62.516 | 72.222 | 0.00 | 0.00 | 0.00 | 6.53 |
336 | 338 | 3.107661 | CGTACACCGGGTTGCGAC | 61.108 | 66.667 | 6.32 | 0.00 | 0.00 | 5.19 |
361 | 363 | 1.659335 | GACACTTTCGACCGACGCA | 60.659 | 57.895 | 0.00 | 0.00 | 42.26 | 5.24 |
364 | 366 | 2.355363 | CTTTCGACCGACGCACCA | 60.355 | 61.111 | 0.00 | 0.00 | 42.26 | 4.17 |
374 | 376 | 1.568612 | CGACGCACCACTTCAATGCT | 61.569 | 55.000 | 0.00 | 0.00 | 37.20 | 3.79 |
381 | 383 | 1.093159 | CCACTTCAATGCTGGCTCTC | 58.907 | 55.000 | 0.00 | 0.00 | 0.00 | 3.20 |
382 | 384 | 1.612462 | CCACTTCAATGCTGGCTCTCA | 60.612 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
384 | 386 | 2.753452 | CACTTCAATGCTGGCTCTCATT | 59.247 | 45.455 | 0.00 | 0.00 | 33.56 | 2.57 |
393 | 395 | 3.390311 | TGCTGGCTCTCATTAGATGTCAT | 59.610 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
408 | 434 | 1.003839 | TCATGTCCGTTGGTGCTCC | 60.004 | 57.895 | 0.00 | 0.00 | 0.00 | 4.70 |
409 | 435 | 2.040544 | CATGTCCGTTGGTGCTCCC | 61.041 | 63.158 | 1.59 | 0.00 | 0.00 | 4.30 |
422 | 448 | 4.803426 | CTCCCGAGCGGCACTGAC | 62.803 | 72.222 | 1.45 | 0.00 | 0.00 | 3.51 |
431 | 457 | 4.693532 | GGCACTGACCGACATGAA | 57.306 | 55.556 | 0.00 | 0.00 | 0.00 | 2.57 |
433 | 459 | 2.309528 | GGCACTGACCGACATGAATA | 57.690 | 50.000 | 0.00 | 0.00 | 0.00 | 1.75 |
434 | 460 | 2.838736 | GGCACTGACCGACATGAATAT | 58.161 | 47.619 | 0.00 | 0.00 | 0.00 | 1.28 |
442 | 468 | 1.536766 | CCGACATGAATATGCGGCAAT | 59.463 | 47.619 | 6.82 | 0.00 | 42.51 | 3.56 |
450 | 476 | 3.884693 | TGAATATGCGGCAATCACTTCAT | 59.115 | 39.130 | 6.82 | 0.00 | 0.00 | 2.57 |
451 | 477 | 3.909776 | ATATGCGGCAATCACTTCATG | 57.090 | 42.857 | 6.82 | 0.00 | 0.00 | 3.07 |
459 | 485 | 2.159198 | GCAATCACTTCATGCGGGAAAT | 60.159 | 45.455 | 0.00 | 0.00 | 0.00 | 2.17 |
460 | 486 | 3.066621 | GCAATCACTTCATGCGGGAAATA | 59.933 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
462 | 488 | 3.627395 | TCACTTCATGCGGGAAATAGT | 57.373 | 42.857 | 0.00 | 0.00 | 0.00 | 2.12 |
475 | 501 | 4.072131 | GGGAAATAGTGTGAGCAAGTGAA | 58.928 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
490 | 516 | 1.007842 | AGTGAAAGGGTTTTGGGTGGT | 59.992 | 47.619 | 0.00 | 0.00 | 0.00 | 4.16 |
548 | 574 | 1.463674 | CCCGCAAAGCATCCTAGTTT | 58.536 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
558 | 584 | 2.911484 | CATCCTAGTTTGCCTCTGGTC | 58.089 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
559 | 585 | 1.276622 | TCCTAGTTTGCCTCTGGTCC | 58.723 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
563 | 589 | 1.966451 | GTTTGCCTCTGGTCCGTGG | 60.966 | 63.158 | 0.00 | 0.00 | 0.00 | 4.94 |
567 | 593 | 2.982130 | CCTCTGGTCCGTGGAAGG | 59.018 | 66.667 | 0.00 | 0.00 | 0.00 | 3.46 |
599 | 625 | 2.184322 | CAGTCCACGGACCGATGG | 59.816 | 66.667 | 23.38 | 22.66 | 45.59 | 3.51 |
600 | 626 | 2.036731 | AGTCCACGGACCGATGGA | 59.963 | 61.111 | 25.11 | 25.11 | 45.59 | 3.41 |
603 | 629 | 2.184322 | CCACGGACCGATGGAGTG | 59.816 | 66.667 | 23.38 | 6.94 | 38.34 | 3.51 |
623 | 649 | 5.189928 | AGTGCCACGTTGGATGATAAAATA | 58.810 | 37.500 | 8.04 | 0.00 | 40.96 | 1.40 |
624 | 650 | 5.650266 | AGTGCCACGTTGGATGATAAAATAA | 59.350 | 36.000 | 8.04 | 0.00 | 40.96 | 1.40 |
625 | 651 | 6.151985 | AGTGCCACGTTGGATGATAAAATAAA | 59.848 | 34.615 | 8.04 | 0.00 | 40.96 | 1.40 |
627 | 653 | 8.132362 | GTGCCACGTTGGATGATAAAATAAATA | 58.868 | 33.333 | 8.04 | 0.00 | 40.96 | 1.40 |
639 | 665 | 8.725405 | TGATAAAATAAATACAGACCGCTTGA | 57.275 | 30.769 | 0.00 | 0.00 | 0.00 | 3.02 |
659 | 685 | 2.048784 | CGGATGGATGCGAGCGAT | 60.049 | 61.111 | 0.00 | 0.00 | 44.78 | 4.58 |
660 | 686 | 1.665916 | CGGATGGATGCGAGCGATT | 60.666 | 57.895 | 0.00 | 0.00 | 44.78 | 3.34 |
661 | 687 | 1.224069 | CGGATGGATGCGAGCGATTT | 61.224 | 55.000 | 0.00 | 0.00 | 44.78 | 2.17 |
662 | 688 | 0.236711 | GGATGGATGCGAGCGATTTG | 59.763 | 55.000 | 0.00 | 0.00 | 0.00 | 2.32 |
663 | 689 | 1.220529 | GATGGATGCGAGCGATTTGA | 58.779 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
664 | 690 | 1.194098 | GATGGATGCGAGCGATTTGAG | 59.806 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
665 | 691 | 0.811219 | TGGATGCGAGCGATTTGAGG | 60.811 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
667 | 693 | 1.009829 | GATGCGAGCGATTTGAGGTT | 58.990 | 50.000 | 0.00 | 0.00 | 0.00 | 3.50 |
668 | 694 | 2.201732 | GATGCGAGCGATTTGAGGTTA | 58.798 | 47.619 | 0.00 | 0.00 | 0.00 | 2.85 |
669 | 695 | 1.640428 | TGCGAGCGATTTGAGGTTAG | 58.360 | 50.000 | 0.00 | 0.00 | 0.00 | 2.34 |
670 | 696 | 1.067142 | TGCGAGCGATTTGAGGTTAGT | 60.067 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
672 | 698 | 2.607187 | CGAGCGATTTGAGGTTAGTGT | 58.393 | 47.619 | 0.00 | 0.00 | 0.00 | 3.55 |
673 | 699 | 2.993899 | CGAGCGATTTGAGGTTAGTGTT | 59.006 | 45.455 | 0.00 | 0.00 | 0.00 | 3.32 |
674 | 700 | 3.181530 | CGAGCGATTTGAGGTTAGTGTTG | 60.182 | 47.826 | 0.00 | 0.00 | 0.00 | 3.33 |
675 | 701 | 3.074412 | AGCGATTTGAGGTTAGTGTTGG | 58.926 | 45.455 | 0.00 | 0.00 | 0.00 | 3.77 |
676 | 702 | 3.071479 | GCGATTTGAGGTTAGTGTTGGA | 58.929 | 45.455 | 0.00 | 0.00 | 0.00 | 3.53 |
677 | 703 | 3.500680 | GCGATTTGAGGTTAGTGTTGGAA | 59.499 | 43.478 | 0.00 | 0.00 | 0.00 | 3.53 |
679 | 705 | 4.994852 | CGATTTGAGGTTAGTGTTGGAAGA | 59.005 | 41.667 | 0.00 | 0.00 | 0.00 | 2.87 |
691 | 739 | 6.136541 | AGTGTTGGAAGATCAAAGTTTGAC | 57.863 | 37.500 | 20.26 | 13.70 | 43.48 | 3.18 |
698 | 746 | 9.739276 | TTGGAAGATCAAAGTTTGACTACATAT | 57.261 | 29.630 | 20.26 | 2.89 | 43.48 | 1.78 |
744 | 792 | 6.603237 | TTATTCACATATTCAACTCTGCGG | 57.397 | 37.500 | 0.00 | 0.00 | 0.00 | 5.69 |
745 | 793 | 2.279741 | TCACATATTCAACTCTGCGGC | 58.720 | 47.619 | 0.00 | 0.00 | 0.00 | 6.53 |
749 | 797 | 1.083806 | TATTCAACTCTGCGGCGCTG | 61.084 | 55.000 | 33.26 | 31.27 | 0.00 | 5.18 |
758 | 806 | 0.041839 | CTGCGGCGCTGATTATGAAC | 60.042 | 55.000 | 33.26 | 0.00 | 0.00 | 3.18 |
785 | 834 | 3.872771 | GGAAACTGAACTTGGTGAACGTA | 59.127 | 43.478 | 0.00 | 0.00 | 0.00 | 3.57 |
787 | 836 | 5.163733 | GGAAACTGAACTTGGTGAACGTAAA | 60.164 | 40.000 | 0.00 | 0.00 | 0.00 | 2.01 |
789 | 838 | 4.255301 | ACTGAACTTGGTGAACGTAAACA | 58.745 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
790 | 839 | 4.879545 | ACTGAACTTGGTGAACGTAAACAT | 59.120 | 37.500 | 0.00 | 0.00 | 0.00 | 2.71 |
791 | 840 | 5.007332 | ACTGAACTTGGTGAACGTAAACATC | 59.993 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
792 | 841 | 4.876679 | TGAACTTGGTGAACGTAAACATCA | 59.123 | 37.500 | 0.00 | 0.00 | 0.00 | 3.07 |
793 | 842 | 4.806342 | ACTTGGTGAACGTAAACATCAC | 57.194 | 40.909 | 8.49 | 8.49 | 42.08 | 3.06 |
794 | 843 | 4.193090 | ACTTGGTGAACGTAAACATCACA | 58.807 | 39.130 | 16.73 | 3.45 | 44.05 | 3.58 |
795 | 844 | 4.272504 | ACTTGGTGAACGTAAACATCACAG | 59.727 | 41.667 | 16.73 | 10.15 | 44.05 | 3.66 |
796 | 845 | 3.135225 | TGGTGAACGTAAACATCACAGG | 58.865 | 45.455 | 16.73 | 0.00 | 44.05 | 4.00 |
797 | 846 | 2.095919 | GGTGAACGTAAACATCACAGGC | 60.096 | 50.000 | 16.73 | 0.00 | 44.05 | 4.85 |
798 | 847 | 2.546368 | GTGAACGTAAACATCACAGGCA | 59.454 | 45.455 | 11.49 | 0.00 | 42.31 | 4.75 |
799 | 848 | 3.188460 | GTGAACGTAAACATCACAGGCAT | 59.812 | 43.478 | 11.49 | 0.00 | 42.31 | 4.40 |
802 | 851 | 4.846779 | ACGTAAACATCACAGGCATTTT | 57.153 | 36.364 | 0.00 | 0.00 | 0.00 | 1.82 |
803 | 852 | 4.545610 | ACGTAAACATCACAGGCATTTTG | 58.454 | 39.130 | 0.00 | 0.00 | 0.00 | 2.44 |
804 | 853 | 4.037446 | ACGTAAACATCACAGGCATTTTGT | 59.963 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
806 | 855 | 5.794945 | CGTAAACATCACAGGCATTTTGTAG | 59.205 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
808 | 857 | 5.789643 | AACATCACAGGCATTTTGTAGTT | 57.210 | 34.783 | 0.00 | 0.00 | 0.00 | 2.24 |
810 | 859 | 6.500684 | ACATCACAGGCATTTTGTAGTTAG | 57.499 | 37.500 | 0.00 | 0.00 | 0.00 | 2.34 |
811 | 860 | 5.106157 | ACATCACAGGCATTTTGTAGTTAGC | 60.106 | 40.000 | 0.00 | 0.00 | 0.00 | 3.09 |
812 | 861 | 3.435327 | TCACAGGCATTTTGTAGTTAGCG | 59.565 | 43.478 | 0.00 | 0.00 | 0.00 | 4.26 |
813 | 862 | 2.747446 | ACAGGCATTTTGTAGTTAGCGG | 59.253 | 45.455 | 0.00 | 0.00 | 0.00 | 5.52 |
814 | 863 | 2.097466 | CAGGCATTTTGTAGTTAGCGGG | 59.903 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
816 | 865 | 2.096980 | GGCATTTTGTAGTTAGCGGGAC | 59.903 | 50.000 | 0.00 | 0.00 | 0.00 | 4.46 |
830 | 879 | 1.141234 | GGGACGTCTCCTTTAGCCG | 59.859 | 63.158 | 16.46 | 0.00 | 36.68 | 5.52 |
832 | 881 | 0.529378 | GGACGTCTCCTTTAGCCGAA | 59.471 | 55.000 | 16.46 | 0.00 | 33.07 | 4.30 |
833 | 882 | 1.067354 | GGACGTCTCCTTTAGCCGAAA | 60.067 | 52.381 | 16.46 | 0.00 | 33.07 | 3.46 |
834 | 883 | 2.611224 | GGACGTCTCCTTTAGCCGAAAA | 60.611 | 50.000 | 16.46 | 0.00 | 33.07 | 2.29 |
835 | 884 | 2.410939 | ACGTCTCCTTTAGCCGAAAAC | 58.589 | 47.619 | 0.00 | 0.00 | 0.00 | 2.43 |
836 | 885 | 2.036862 | ACGTCTCCTTTAGCCGAAAACT | 59.963 | 45.455 | 0.00 | 0.00 | 0.00 | 2.66 |
838 | 887 | 4.240096 | CGTCTCCTTTAGCCGAAAACTTA | 58.760 | 43.478 | 0.00 | 0.00 | 0.00 | 2.24 |
840 | 889 | 5.005490 | CGTCTCCTTTAGCCGAAAACTTATC | 59.995 | 44.000 | 0.00 | 0.00 | 0.00 | 1.75 |
842 | 891 | 4.824289 | TCCTTTAGCCGAAAACTTATCGT | 58.176 | 39.130 | 0.00 | 0.00 | 38.60 | 3.73 |
845 | 894 | 5.220416 | CCTTTAGCCGAAAACTTATCGTCAG | 60.220 | 44.000 | 0.00 | 0.00 | 38.60 | 3.51 |
871 | 934 | 3.506398 | TGGGGGTCATTCTTTTCTTTCC | 58.494 | 45.455 | 0.00 | 0.00 | 0.00 | 3.13 |
891 | 954 | 6.721571 | TTCCGAACAAACATTATCAGTCTC | 57.278 | 37.500 | 0.00 | 0.00 | 0.00 | 3.36 |
909 | 1522 | 1.092921 | TCTGGTTGTGTCGTGTTGCC | 61.093 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 |
970 | 1583 | 5.968676 | ACACTCCTTGCCCTATGTATTTA | 57.031 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
971 | 1584 | 6.515512 | ACACTCCTTGCCCTATGTATTTAT | 57.484 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
972 | 1585 | 7.626999 | ACACTCCTTGCCCTATGTATTTATA | 57.373 | 36.000 | 0.00 | 0.00 | 0.00 | 0.98 |
973 | 1586 | 8.219660 | ACACTCCTTGCCCTATGTATTTATAT | 57.780 | 34.615 | 0.00 | 0.00 | 0.00 | 0.86 |
974 | 1587 | 8.103305 | ACACTCCTTGCCCTATGTATTTATATG | 58.897 | 37.037 | 0.00 | 0.00 | 0.00 | 1.78 |
975 | 1588 | 8.103305 | CACTCCTTGCCCTATGTATTTATATGT | 58.897 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
976 | 1589 | 9.333961 | ACTCCTTGCCCTATGTATTTATATGTA | 57.666 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
1003 | 1616 | 1.333524 | GCCATTCGTGATCAATCGCAG | 60.334 | 52.381 | 0.00 | 0.00 | 37.15 | 5.18 |
1011 | 1624 | 2.735663 | GTGATCAATCGCAGCCATCTAG | 59.264 | 50.000 | 0.00 | 0.00 | 37.27 | 2.43 |
1012 | 1625 | 2.629617 | TGATCAATCGCAGCCATCTAGA | 59.370 | 45.455 | 0.00 | 0.00 | 0.00 | 2.43 |
1245 | 1864 | 1.520787 | GTACACGGCGGCTATGCTT | 60.521 | 57.895 | 13.24 | 0.00 | 34.52 | 3.91 |
1308 | 1927 | 3.688159 | GGACGCGTGGTGGTAGGT | 61.688 | 66.667 | 20.70 | 0.00 | 0.00 | 3.08 |
1450 | 2069 | 0.543410 | TTGCTCGTTCCCAGGGACTA | 60.543 | 55.000 | 8.12 | 0.00 | 36.02 | 2.59 |
1524 | 2144 | 1.893137 | AGGTGGAAATTTTCTTCCGGC | 59.107 | 47.619 | 8.93 | 0.00 | 46.85 | 6.13 |
1570 | 2190 | 2.673368 | CGTCTACTCCTTGATTTGCCAC | 59.327 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
1582 | 2202 | 1.179152 | TTTGCCACTGGATGCTCATG | 58.821 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
1618 | 2238 | 3.886505 | TCGTCCCAAAATTGTTTGTAGCT | 59.113 | 39.130 | 0.00 | 0.00 | 42.26 | 3.32 |
1661 | 2281 | 2.937469 | TTGTGTTGGCTGTTTGTGAG | 57.063 | 45.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1681 | 2309 | 6.478673 | TGTGAGTTGTGACACAAATACAGTAG | 59.521 | 38.462 | 22.16 | 0.00 | 40.15 | 2.57 |
1766 | 4963 | 2.887151 | ATTTGGCTGCTTGTAGGAGT | 57.113 | 45.000 | 0.00 | 0.00 | 35.94 | 3.85 |
1772 | 4969 | 2.432510 | GGCTGCTTGTAGGAGTAGACAT | 59.567 | 50.000 | 0.00 | 0.00 | 37.35 | 3.06 |
1791 | 4988 | 9.956720 | GTAGACATCCATTGAATCCTTTATTTG | 57.043 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
1797 | 4994 | 9.768662 | ATCCATTGAATCCTTTATTTGTATTGC | 57.231 | 29.630 | 0.00 | 0.00 | 0.00 | 3.56 |
1798 | 4995 | 8.980596 | TCCATTGAATCCTTTATTTGTATTGCT | 58.019 | 29.630 | 0.00 | 0.00 | 0.00 | 3.91 |
2556 | 5867 | 6.857437 | TTCCTCAGAGTCATCTTGATTACA | 57.143 | 37.500 | 0.00 | 0.00 | 31.64 | 2.41 |
2557 | 5868 | 7.429374 | TTCCTCAGAGTCATCTTGATTACAT | 57.571 | 36.000 | 0.00 | 0.00 | 31.64 | 2.29 |
2591 | 5902 | 3.814005 | ACGAAACTCACTGTTGGTACT | 57.186 | 42.857 | 0.00 | 0.00 | 39.13 | 2.73 |
2662 | 5973 | 9.823647 | ATGATCCATGGTTCGATATTAACTATC | 57.176 | 33.333 | 12.58 | 2.58 | 34.06 | 2.08 |
2663 | 5974 | 8.258007 | TGATCCATGGTTCGATATTAACTATCC | 58.742 | 37.037 | 12.58 | 0.00 | 33.89 | 2.59 |
2664 | 5975 | 7.547697 | TCCATGGTTCGATATTAACTATCCA | 57.452 | 36.000 | 12.58 | 0.00 | 33.89 | 3.41 |
2665 | 5976 | 7.969004 | TCCATGGTTCGATATTAACTATCCAA | 58.031 | 34.615 | 12.58 | 0.00 | 33.89 | 3.53 |
2666 | 5977 | 8.433599 | TCCATGGTTCGATATTAACTATCCAAA | 58.566 | 33.333 | 12.58 | 0.00 | 33.89 | 3.28 |
2667 | 5978 | 8.721478 | CCATGGTTCGATATTAACTATCCAAAG | 58.279 | 37.037 | 2.57 | 0.00 | 33.89 | 2.77 |
2668 | 5979 | 9.273016 | CATGGTTCGATATTAACTATCCAAAGT | 57.727 | 33.333 | 0.00 | 0.00 | 33.89 | 2.66 |
2669 | 5980 | 8.882415 | TGGTTCGATATTAACTATCCAAAGTC | 57.118 | 34.615 | 0.00 | 0.00 | 33.89 | 3.01 |
2670 | 5981 | 7.929785 | TGGTTCGATATTAACTATCCAAAGTCC | 59.070 | 37.037 | 0.00 | 0.00 | 33.89 | 3.85 |
2671 | 5982 | 7.929785 | GGTTCGATATTAACTATCCAAAGTCCA | 59.070 | 37.037 | 0.00 | 0.00 | 33.89 | 4.02 |
2672 | 5983 | 9.321562 | GTTCGATATTAACTATCCAAAGTCCAA | 57.678 | 33.333 | 0.00 | 0.00 | 33.89 | 3.53 |
2673 | 5984 | 9.893634 | TTCGATATTAACTATCCAAAGTCCAAA | 57.106 | 29.630 | 0.00 | 0.00 | 33.89 | 3.28 |
2674 | 5985 | 9.321562 | TCGATATTAACTATCCAAAGTCCAAAC | 57.678 | 33.333 | 0.00 | 0.00 | 33.89 | 2.93 |
2675 | 5986 | 8.557029 | CGATATTAACTATCCAAAGTCCAAACC | 58.443 | 37.037 | 0.00 | 0.00 | 33.89 | 3.27 |
2676 | 5987 | 8.762481 | ATATTAACTATCCAAAGTCCAAACCC | 57.238 | 34.615 | 0.00 | 0.00 | 0.00 | 4.11 |
2677 | 5988 | 4.741928 | AACTATCCAAAGTCCAAACCCT | 57.258 | 40.909 | 0.00 | 0.00 | 0.00 | 4.34 |
2678 | 5989 | 4.741928 | ACTATCCAAAGTCCAAACCCTT | 57.258 | 40.909 | 0.00 | 0.00 | 0.00 | 3.95 |
2679 | 5990 | 5.074746 | ACTATCCAAAGTCCAAACCCTTT | 57.925 | 39.130 | 0.00 | 0.00 | 0.00 | 3.11 |
2680 | 5991 | 6.208840 | ACTATCCAAAGTCCAAACCCTTTA | 57.791 | 37.500 | 0.00 | 0.00 | 30.06 | 1.85 |
2681 | 5992 | 6.800890 | ACTATCCAAAGTCCAAACCCTTTAT | 58.199 | 36.000 | 0.00 | 0.00 | 30.06 | 1.40 |
2682 | 5993 | 6.663523 | ACTATCCAAAGTCCAAACCCTTTATG | 59.336 | 38.462 | 0.00 | 0.00 | 30.06 | 1.90 |
2683 | 5994 | 4.156477 | TCCAAAGTCCAAACCCTTTATGG | 58.844 | 43.478 | 0.00 | 0.00 | 35.49 | 2.74 |
2684 | 5995 | 3.306710 | CCAAAGTCCAAACCCTTTATGGC | 60.307 | 47.826 | 0.00 | 0.00 | 34.13 | 4.40 |
2702 | 6013 | 1.032114 | GCCCCTGGATTCCTGTTTCG | 61.032 | 60.000 | 3.95 | 0.00 | 0.00 | 3.46 |
2719 | 6030 | 0.537188 | TCGCAGACTCCCTTGGATTC | 59.463 | 55.000 | 0.00 | 0.00 | 32.48 | 2.52 |
2913 | 6308 | 4.297299 | ACTTCACAACATGTTTGCTCTG | 57.703 | 40.909 | 8.77 | 0.00 | 0.00 | 3.35 |
3072 | 6467 | 9.869844 | CTATTTTGCTTCTTTGTAGAATATCCG | 57.130 | 33.333 | 0.00 | 0.00 | 39.58 | 4.18 |
3152 | 6547 | 3.396260 | ACTAGCTCTGTAAAAACGCCA | 57.604 | 42.857 | 0.00 | 0.00 | 0.00 | 5.69 |
3913 | 7312 | 5.815581 | TGTTGCACCTTCCTTTGATATAGT | 58.184 | 37.500 | 0.00 | 0.00 | 0.00 | 2.12 |
3926 | 7325 | 8.677300 | TCCTTTGATATAGTGTCAAATTCTTGC | 58.323 | 33.333 | 2.63 | 0.00 | 42.68 | 4.01 |
3927 | 7326 | 8.680903 | CCTTTGATATAGTGTCAAATTCTTGCT | 58.319 | 33.333 | 2.63 | 0.00 | 42.68 | 3.91 |
4149 | 7548 | 6.101650 | TGATCAAGAAGAGTGCTTTGACTA | 57.898 | 37.500 | 0.00 | 0.00 | 33.61 | 2.59 |
4237 | 7636 | 7.601856 | TGGTGCCTGTTATTAAATCTTTTCAG | 58.398 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
4350 | 7749 | 0.452987 | TTGCAATGGAGAATGCTCGC | 59.547 | 50.000 | 0.00 | 0.00 | 42.97 | 5.03 |
4410 | 7809 | 2.443255 | AGTGATAAATCCCGAGGCCAAT | 59.557 | 45.455 | 5.01 | 0.00 | 0.00 | 3.16 |
4518 | 7917 | 0.420272 | TTCTAGGGCCAGTTAGGGGT | 59.580 | 55.000 | 6.18 | 0.00 | 38.09 | 4.95 |
4589 | 7988 | 9.679661 | TTACATCCAAGAATGATAAGTGCTTTA | 57.320 | 29.630 | 0.00 | 0.00 | 0.00 | 1.85 |
4620 | 8019 | 3.118592 | ACTGCAGTACTTAATGGAGCCTC | 60.119 | 47.826 | 20.16 | 0.00 | 42.28 | 4.70 |
4662 | 8063 | 3.947196 | TGCACATCATGTTCATTACTCCC | 59.053 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
4674 | 8075 | 5.291100 | TCATTACTCCCCAGGCTATCTAT | 57.709 | 43.478 | 0.00 | 0.00 | 0.00 | 1.98 |
4893 | 8294 | 3.204158 | TGGTAAATGTATCCTGCCACCAT | 59.796 | 43.478 | 0.00 | 0.00 | 30.11 | 3.55 |
4899 | 8300 | 6.409524 | AATGTATCCTGCCACCATAATTTG | 57.590 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
4922 | 8323 | 3.640029 | CAGATGCATTCCAATAGGCCTTT | 59.360 | 43.478 | 12.58 | 0.00 | 33.74 | 3.11 |
5018 | 8422 | 1.179152 | CAGGTTGGAATGATGCTGCA | 58.821 | 50.000 | 4.13 | 4.13 | 0.00 | 4.41 |
5061 | 8465 | 2.826488 | ACCTCACTCTATGTTGCCTCT | 58.174 | 47.619 | 0.00 | 0.00 | 0.00 | 3.69 |
5136 | 8540 | 5.065474 | TCCACTTCTACAAACAAAGGAAACG | 59.935 | 40.000 | 0.00 | 0.00 | 0.00 | 3.60 |
5378 | 8895 | 1.105759 | GGCATTCATCCAGACTGGCC | 61.106 | 60.000 | 17.33 | 8.68 | 43.79 | 5.36 |
5464 | 8981 | 3.432749 | CCTCATTTCCTGATCGGACACAT | 60.433 | 47.826 | 2.08 | 0.00 | 42.97 | 3.21 |
5576 | 9102 | 4.927425 | GCTTTGAGTAACCGTTGTCTGATA | 59.073 | 41.667 | 0.00 | 0.00 | 0.00 | 2.15 |
5577 | 9103 | 5.581085 | GCTTTGAGTAACCGTTGTCTGATAT | 59.419 | 40.000 | 0.00 | 0.00 | 0.00 | 1.63 |
5578 | 9104 | 6.455646 | GCTTTGAGTAACCGTTGTCTGATATG | 60.456 | 42.308 | 0.00 | 0.00 | 0.00 | 1.78 |
5579 | 9105 | 5.654603 | TGAGTAACCGTTGTCTGATATGT | 57.345 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
5580 | 9106 | 5.647589 | TGAGTAACCGTTGTCTGATATGTC | 58.352 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
5581 | 9107 | 5.417894 | TGAGTAACCGTTGTCTGATATGTCT | 59.582 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
5592 | 9118 | 4.973051 | GTCTGATATGTCTAAGTGCACGAG | 59.027 | 45.833 | 12.01 | 13.09 | 0.00 | 4.18 |
5986 | 9513 | 9.455847 | GTACCGATTTATGTACTTGTAAGTAGG | 57.544 | 37.037 | 4.79 | 3.55 | 41.81 | 3.18 |
6261 | 11687 | 8.461249 | TCCTGCCTAAACTAATACAGTAGTAG | 57.539 | 38.462 | 12.58 | 12.58 | 36.04 | 2.57 |
6285 | 11711 | 6.765036 | AGAGAGTATGCAACTTGGTATGATTG | 59.235 | 38.462 | 0.00 | 0.00 | 39.07 | 2.67 |
6304 | 11730 | 3.257469 | TGCTGTGCCAAACAAATGAAA | 57.743 | 38.095 | 0.00 | 0.00 | 38.67 | 2.69 |
6366 | 11792 | 2.485122 | GCACCGCATAACCTGTGC | 59.515 | 61.111 | 0.00 | 0.00 | 46.09 | 4.57 |
6372 | 11798 | 3.442996 | GCATAACCTGTGCGACTCT | 57.557 | 52.632 | 0.00 | 0.00 | 32.29 | 3.24 |
6461 | 11993 | 7.294017 | AGTTAATTAGCCTAATACAGCGGTA | 57.706 | 36.000 | 0.00 | 0.00 | 0.00 | 4.02 |
6588 | 12136 | 2.871096 | TAGATGAAAAGGCAACGGGT | 57.129 | 45.000 | 0.00 | 0.00 | 46.39 | 5.28 |
6633 | 12181 | 6.273825 | ACTATCAACATACTTACGGAAGCAG | 58.726 | 40.000 | 7.48 | 0.00 | 35.97 | 4.24 |
6643 | 12191 | 6.134040 | ACTTACGGAAGCAGTCTTATACTC | 57.866 | 41.667 | 7.48 | 0.00 | 34.37 | 2.59 |
6644 | 12192 | 5.067544 | ACTTACGGAAGCAGTCTTATACTCC | 59.932 | 44.000 | 7.48 | 0.00 | 34.37 | 3.85 |
6650 | 12198 | 4.528076 | AGCAGTCTTATACTCCCTCTGA | 57.472 | 45.455 | 0.00 | 0.00 | 35.76 | 3.27 |
6682 | 12230 | 8.269317 | ACTCCCTCCGTTTTTAAATATATGACA | 58.731 | 33.333 | 0.00 | 0.00 | 0.00 | 3.58 |
6711 | 12259 | 6.213195 | TGGTAGTTAGGAACGGAGGAAAATAA | 59.787 | 38.462 | 0.00 | 0.00 | 36.23 | 1.40 |
6859 | 12597 | 9.383519 | TGTGTTTATTTATTTTGGCTCAAACAA | 57.616 | 25.926 | 0.00 | 0.00 | 36.66 | 2.83 |
6987 | 12727 | 5.244755 | TGCTAGATCAAATATGCGCCATTA | 58.755 | 37.500 | 4.18 | 0.00 | 0.00 | 1.90 |
6992 | 12732 | 1.888512 | CAAATATGCGCCATTAGCCCT | 59.111 | 47.619 | 4.18 | 0.00 | 38.78 | 5.19 |
7031 | 12771 | 4.133078 | CCGATACCTTACTCGACCTTACT | 58.867 | 47.826 | 0.00 | 0.00 | 37.05 | 2.24 |
7035 | 12775 | 4.582973 | ACCTTACTCGACCTTACTACCT | 57.417 | 45.455 | 0.00 | 0.00 | 0.00 | 3.08 |
7036 | 12776 | 4.928263 | ACCTTACTCGACCTTACTACCTT | 58.072 | 43.478 | 0.00 | 0.00 | 0.00 | 3.50 |
7074 | 12816 | 3.486375 | GCAACCACATGATCTGAATGACG | 60.486 | 47.826 | 0.00 | 0.00 | 0.00 | 4.35 |
7116 | 12858 | 5.129320 | ACACATGCTACATCATCCTAGACAA | 59.871 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
7132 | 13122 | 8.660295 | TCCTAGACAACTAAAGAACCTAATGA | 57.340 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
6 | 7 | 4.789075 | ATCGTCGTTCGCACCCCG | 62.789 | 66.667 | 0.00 | 0.00 | 39.67 | 5.73 |
7 | 8 | 3.186047 | CATCGTCGTTCGCACCCC | 61.186 | 66.667 | 0.00 | 0.00 | 39.67 | 4.95 |
27 | 28 | 2.743928 | CTCTGCCTTGACCACGCC | 60.744 | 66.667 | 0.00 | 0.00 | 0.00 | 5.68 |
36 | 37 | 0.035630 | GATGTCACCAGCTCTGCCTT | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
38 | 39 | 1.451028 | GGATGTCACCAGCTCTGCC | 60.451 | 63.158 | 0.00 | 0.00 | 0.00 | 4.85 |
47 | 48 | 1.064946 | CGAGAGCGAGGATGTCACC | 59.935 | 63.158 | 0.00 | 0.00 | 40.82 | 4.02 |
49 | 50 | 0.960861 | ACACGAGAGCGAGGATGTCA | 60.961 | 55.000 | 0.00 | 0.00 | 41.64 | 3.58 |
60 | 61 | 0.172352 | GAAGAGGAGGCACACGAGAG | 59.828 | 60.000 | 0.00 | 0.00 | 0.00 | 3.20 |
65 | 66 | 1.599576 | GGAGGAAGAGGAGGCACAC | 59.400 | 63.158 | 0.00 | 0.00 | 0.00 | 3.82 |
68 | 69 | 1.682684 | GACGGAGGAAGAGGAGGCA | 60.683 | 63.158 | 0.00 | 0.00 | 0.00 | 4.75 |
90 | 91 | 0.716108 | CTGTTCTTGGACATCGACGC | 59.284 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
92 | 93 | 1.726853 | CCCTGTTCTTGGACATCGAC | 58.273 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
112 | 113 | 2.997315 | TGTGGGCAGAGGGAGACG | 60.997 | 66.667 | 0.00 | 0.00 | 0.00 | 4.18 |
130 | 131 | 4.759096 | GATGGCGGTTGCACGTGC | 62.759 | 66.667 | 33.11 | 33.11 | 45.35 | 5.34 |
146 | 147 | 2.761195 | CGAGATCCACCACGAGCGA | 61.761 | 63.158 | 0.00 | 0.00 | 0.00 | 4.93 |
151 | 152 | 4.873129 | CCCGCGAGATCCACCACG | 62.873 | 72.222 | 8.23 | 0.00 | 0.00 | 4.94 |
167 | 168 | 3.181967 | CTGTCGTACTGCAGCGCC | 61.182 | 66.667 | 15.27 | 0.00 | 0.00 | 6.53 |
170 | 171 | 1.807573 | GCTCCTGTCGTACTGCAGC | 60.808 | 63.158 | 15.27 | 0.00 | 0.00 | 5.25 |
172 | 173 | 1.586541 | CTGCTCCTGTCGTACTGCA | 59.413 | 57.895 | 0.00 | 0.00 | 0.00 | 4.41 |
179 | 180 | 3.559024 | CAAGTGCTGCTCCTGTCG | 58.441 | 61.111 | 0.00 | 0.00 | 0.00 | 4.35 |
214 | 216 | 1.076850 | TATGGTGGCGGACGGTCTA | 60.077 | 57.895 | 8.23 | 0.00 | 0.00 | 2.59 |
264 | 266 | 1.011968 | CGCGGAGGAACAAATCGTCA | 61.012 | 55.000 | 0.00 | 0.00 | 43.26 | 4.35 |
265 | 267 | 0.734942 | TCGCGGAGGAACAAATCGTC | 60.735 | 55.000 | 6.13 | 0.00 | 41.25 | 4.20 |
266 | 268 | 0.736325 | CTCGCGGAGGAACAAATCGT | 60.736 | 55.000 | 6.13 | 0.00 | 0.00 | 3.73 |
267 | 269 | 1.999051 | CTCGCGGAGGAACAAATCG | 59.001 | 57.895 | 6.13 | 0.00 | 0.00 | 3.34 |
300 | 302 | 2.364448 | GCCTTCTCCCCGACTCCT | 60.364 | 66.667 | 0.00 | 0.00 | 0.00 | 3.69 |
302 | 304 | 4.516195 | GCGCCTTCTCCCCGACTC | 62.516 | 72.222 | 0.00 | 0.00 | 0.00 | 3.36 |
306 | 308 | 4.867599 | GTACGCGCCTTCTCCCCG | 62.868 | 72.222 | 5.73 | 0.00 | 0.00 | 5.73 |
307 | 309 | 3.766691 | TGTACGCGCCTTCTCCCC | 61.767 | 66.667 | 5.73 | 0.00 | 0.00 | 4.81 |
308 | 310 | 2.508663 | GTGTACGCGCCTTCTCCC | 60.509 | 66.667 | 5.73 | 0.00 | 0.00 | 4.30 |
309 | 311 | 2.508663 | GGTGTACGCGCCTTCTCC | 60.509 | 66.667 | 5.73 | 0.76 | 41.88 | 3.71 |
319 | 321 | 3.107661 | GTCGCAACCCGGTGTACG | 61.108 | 66.667 | 0.00 | 6.41 | 43.80 | 3.67 |
344 | 346 | 1.947642 | GTGCGTCGGTCGAAAGTGT | 60.948 | 57.895 | 0.00 | 0.00 | 42.86 | 3.55 |
353 | 355 | 1.070786 | ATTGAAGTGGTGCGTCGGT | 59.929 | 52.632 | 0.00 | 0.00 | 0.00 | 4.69 |
357 | 359 | 1.518056 | CCAGCATTGAAGTGGTGCGT | 61.518 | 55.000 | 0.00 | 0.00 | 44.12 | 5.24 |
358 | 360 | 1.210931 | CCAGCATTGAAGTGGTGCG | 59.789 | 57.895 | 0.00 | 0.00 | 44.12 | 5.34 |
361 | 363 | 0.403271 | AGAGCCAGCATTGAAGTGGT | 59.597 | 50.000 | 0.00 | 0.00 | 33.51 | 4.16 |
364 | 366 | 2.803030 | ATGAGAGCCAGCATTGAAGT | 57.197 | 45.000 | 0.00 | 0.00 | 0.00 | 3.01 |
374 | 376 | 4.202295 | GGACATGACATCTAATGAGAGCCA | 60.202 | 45.833 | 0.00 | 0.00 | 34.35 | 4.75 |
381 | 383 | 4.034394 | CACCAACGGACATGACATCTAATG | 59.966 | 45.833 | 0.00 | 0.00 | 0.00 | 1.90 |
382 | 384 | 4.191544 | CACCAACGGACATGACATCTAAT | 58.808 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
384 | 386 | 2.676750 | GCACCAACGGACATGACATCTA | 60.677 | 50.000 | 0.00 | 0.00 | 0.00 | 1.98 |
393 | 395 | 4.308458 | CGGGAGCACCAACGGACA | 62.308 | 66.667 | 1.58 | 0.00 | 40.22 | 4.02 |
422 | 448 | 0.943673 | TTGCCGCATATTCATGTCGG | 59.056 | 50.000 | 12.85 | 12.85 | 46.07 | 4.79 |
425 | 451 | 3.216800 | AGTGATTGCCGCATATTCATGT | 58.783 | 40.909 | 0.00 | 0.00 | 34.40 | 3.21 |
431 | 457 | 2.030540 | GCATGAAGTGATTGCCGCATAT | 60.031 | 45.455 | 0.00 | 0.00 | 0.00 | 1.78 |
433 | 459 | 0.101759 | GCATGAAGTGATTGCCGCAT | 59.898 | 50.000 | 0.00 | 0.00 | 0.00 | 4.73 |
434 | 460 | 1.507630 | GCATGAAGTGATTGCCGCA | 59.492 | 52.632 | 0.00 | 0.00 | 0.00 | 5.69 |
438 | 464 | 0.810648 | TTCCCGCATGAAGTGATTGC | 59.189 | 50.000 | 0.00 | 0.00 | 0.00 | 3.56 |
442 | 468 | 3.270027 | CACTATTTCCCGCATGAAGTGA | 58.730 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
450 | 476 | 0.323302 | TGCTCACACTATTTCCCGCA | 59.677 | 50.000 | 0.00 | 0.00 | 0.00 | 5.69 |
451 | 477 | 1.398390 | CTTGCTCACACTATTTCCCGC | 59.602 | 52.381 | 0.00 | 0.00 | 0.00 | 6.13 |
459 | 485 | 2.438021 | ACCCTTTCACTTGCTCACACTA | 59.562 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
460 | 486 | 1.212935 | ACCCTTTCACTTGCTCACACT | 59.787 | 47.619 | 0.00 | 0.00 | 0.00 | 3.55 |
462 | 488 | 2.435372 | AACCCTTTCACTTGCTCACA | 57.565 | 45.000 | 0.00 | 0.00 | 0.00 | 3.58 |
475 | 501 | 0.757561 | CGGAACCACCCAAAACCCTT | 60.758 | 55.000 | 0.00 | 0.00 | 34.64 | 3.95 |
490 | 516 | 4.351938 | CGCGACAGACACCCGGAA | 62.352 | 66.667 | 0.73 | 0.00 | 0.00 | 4.30 |
540 | 566 | 1.276622 | GGACCAGAGGCAAACTAGGA | 58.723 | 55.000 | 0.00 | 0.00 | 0.00 | 2.94 |
548 | 574 | 2.525629 | TTCCACGGACCAGAGGCA | 60.526 | 61.111 | 0.00 | 0.00 | 0.00 | 4.75 |
559 | 585 | 2.126580 | GACGTCCGTCCTTCCACG | 60.127 | 66.667 | 3.51 | 0.00 | 39.08 | 4.94 |
583 | 609 | 2.036731 | TCCATCGGTCCGTGGACT | 59.963 | 61.111 | 23.49 | 0.00 | 44.04 | 3.85 |
588 | 614 | 3.771160 | GGCACTCCATCGGTCCGT | 61.771 | 66.667 | 11.88 | 0.00 | 0.00 | 4.69 |
589 | 615 | 3.770040 | TGGCACTCCATCGGTCCG | 61.770 | 66.667 | 4.39 | 4.39 | 37.47 | 4.79 |
599 | 625 | 2.309528 | TATCATCCAACGTGGCACTC | 57.690 | 50.000 | 16.72 | 0.00 | 37.47 | 3.51 |
600 | 626 | 2.779755 | TTATCATCCAACGTGGCACT | 57.220 | 45.000 | 16.72 | 0.00 | 37.47 | 4.40 |
603 | 629 | 8.132362 | TGTATTTATTTTATCATCCAACGTGGC | 58.868 | 33.333 | 0.00 | 0.00 | 37.47 | 5.01 |
623 | 649 | 2.550978 | CGGATCAAGCGGTCTGTATTT | 58.449 | 47.619 | 0.00 | 0.00 | 0.00 | 1.40 |
624 | 650 | 1.202533 | CCGGATCAAGCGGTCTGTATT | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 1.89 |
625 | 651 | 0.389391 | CCGGATCAAGCGGTCTGTAT | 59.611 | 55.000 | 0.00 | 0.00 | 0.00 | 2.29 |
627 | 653 | 1.330655 | ATCCGGATCAAGCGGTCTGT | 61.331 | 55.000 | 12.38 | 0.00 | 0.00 | 3.41 |
652 | 678 | 2.607187 | ACACTAACCTCAAATCGCTCG | 58.393 | 47.619 | 0.00 | 0.00 | 0.00 | 5.03 |
656 | 682 | 4.994852 | TCTTCCAACACTAACCTCAAATCG | 59.005 | 41.667 | 0.00 | 0.00 | 0.00 | 3.34 |
659 | 685 | 5.935945 | TGATCTTCCAACACTAACCTCAAA | 58.064 | 37.500 | 0.00 | 0.00 | 0.00 | 2.69 |
660 | 686 | 5.560722 | TGATCTTCCAACACTAACCTCAA | 57.439 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
661 | 687 | 5.560722 | TTGATCTTCCAACACTAACCTCA | 57.439 | 39.130 | 0.00 | 0.00 | 0.00 | 3.86 |
662 | 688 | 5.998363 | ACTTTGATCTTCCAACACTAACCTC | 59.002 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
663 | 689 | 5.941788 | ACTTTGATCTTCCAACACTAACCT | 58.058 | 37.500 | 0.00 | 0.00 | 0.00 | 3.50 |
664 | 690 | 6.635030 | AACTTTGATCTTCCAACACTAACC | 57.365 | 37.500 | 0.00 | 0.00 | 0.00 | 2.85 |
665 | 691 | 7.644157 | GTCAAACTTTGATCTTCCAACACTAAC | 59.356 | 37.037 | 7.47 | 0.00 | 42.47 | 2.34 |
667 | 693 | 7.054124 | AGTCAAACTTTGATCTTCCAACACTA | 58.946 | 34.615 | 7.47 | 0.00 | 42.47 | 2.74 |
668 | 694 | 5.888161 | AGTCAAACTTTGATCTTCCAACACT | 59.112 | 36.000 | 7.47 | 0.00 | 42.47 | 3.55 |
669 | 695 | 6.136541 | AGTCAAACTTTGATCTTCCAACAC | 57.863 | 37.500 | 7.47 | 0.00 | 42.47 | 3.32 |
670 | 696 | 6.826231 | TGTAGTCAAACTTTGATCTTCCAACA | 59.174 | 34.615 | 7.47 | 5.76 | 42.47 | 3.33 |
672 | 698 | 9.739276 | ATATGTAGTCAAACTTTGATCTTCCAA | 57.261 | 29.630 | 7.47 | 0.00 | 42.47 | 3.53 |
673 | 699 | 9.739276 | AATATGTAGTCAAACTTTGATCTTCCA | 57.261 | 29.630 | 7.47 | 7.59 | 42.47 | 3.53 |
719 | 767 | 7.095229 | GCCGCAGAGTTGAATATGTGAATAATA | 60.095 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
742 | 790 | 1.564622 | CGGTTCATAATCAGCGCCG | 59.435 | 57.895 | 2.29 | 0.00 | 0.00 | 6.46 |
744 | 792 | 0.861837 | CTCCGGTTCATAATCAGCGC | 59.138 | 55.000 | 0.00 | 0.00 | 32.54 | 5.92 |
745 | 793 | 1.068588 | TCCTCCGGTTCATAATCAGCG | 59.931 | 52.381 | 0.00 | 0.00 | 0.00 | 5.18 |
749 | 797 | 4.766375 | TCAGTTTCCTCCGGTTCATAATC | 58.234 | 43.478 | 0.00 | 0.00 | 0.00 | 1.75 |
758 | 806 | 1.202770 | ACCAAGTTCAGTTTCCTCCGG | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 5.14 |
767 | 816 | 4.255301 | TGTTTACGTTCACCAAGTTCAGT | 58.745 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
768 | 817 | 4.868450 | TGTTTACGTTCACCAAGTTCAG | 57.132 | 40.909 | 0.00 | 0.00 | 0.00 | 3.02 |
785 | 834 | 5.789643 | ACTACAAAATGCCTGTGATGTTT | 57.210 | 34.783 | 0.00 | 0.00 | 0.00 | 2.83 |
787 | 836 | 5.106157 | GCTAACTACAAAATGCCTGTGATGT | 60.106 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
789 | 838 | 4.094887 | CGCTAACTACAAAATGCCTGTGAT | 59.905 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
790 | 839 | 3.435327 | CGCTAACTACAAAATGCCTGTGA | 59.565 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
791 | 840 | 3.426159 | CCGCTAACTACAAAATGCCTGTG | 60.426 | 47.826 | 0.00 | 0.00 | 0.00 | 3.66 |
792 | 841 | 2.747446 | CCGCTAACTACAAAATGCCTGT | 59.253 | 45.455 | 0.00 | 0.00 | 0.00 | 4.00 |
793 | 842 | 2.097466 | CCCGCTAACTACAAAATGCCTG | 59.903 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
794 | 843 | 2.026636 | TCCCGCTAACTACAAAATGCCT | 60.027 | 45.455 | 0.00 | 0.00 | 0.00 | 4.75 |
795 | 844 | 2.096980 | GTCCCGCTAACTACAAAATGCC | 59.903 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
796 | 845 | 2.222953 | CGTCCCGCTAACTACAAAATGC | 60.223 | 50.000 | 0.00 | 0.00 | 0.00 | 3.56 |
797 | 846 | 2.997986 | ACGTCCCGCTAACTACAAAATG | 59.002 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
798 | 847 | 3.056322 | AGACGTCCCGCTAACTACAAAAT | 60.056 | 43.478 | 13.01 | 0.00 | 0.00 | 1.82 |
799 | 848 | 2.297033 | AGACGTCCCGCTAACTACAAAA | 59.703 | 45.455 | 13.01 | 0.00 | 0.00 | 2.44 |
802 | 851 | 1.089920 | GAGACGTCCCGCTAACTACA | 58.910 | 55.000 | 13.01 | 0.00 | 0.00 | 2.74 |
803 | 852 | 0.380024 | GGAGACGTCCCGCTAACTAC | 59.620 | 60.000 | 13.01 | 0.00 | 36.76 | 2.73 |
804 | 853 | 0.254178 | AGGAGACGTCCCGCTAACTA | 59.746 | 55.000 | 13.01 | 0.00 | 45.26 | 2.24 |
806 | 855 | 0.245813 | AAAGGAGACGTCCCGCTAAC | 59.754 | 55.000 | 13.01 | 0.00 | 45.26 | 2.34 |
808 | 857 | 1.386533 | CTAAAGGAGACGTCCCGCTA | 58.613 | 55.000 | 13.01 | 8.91 | 45.26 | 4.26 |
810 | 859 | 1.518792 | GCTAAAGGAGACGTCCCGC | 60.519 | 63.158 | 13.01 | 8.21 | 45.26 | 6.13 |
811 | 860 | 1.141234 | GGCTAAAGGAGACGTCCCG | 59.859 | 63.158 | 13.01 | 2.06 | 45.26 | 5.14 |
817 | 866 | 5.005490 | CGATAAGTTTTCGGCTAAAGGAGAC | 59.995 | 44.000 | 7.73 | 0.00 | 33.05 | 3.36 |
818 | 867 | 5.107133 | CGATAAGTTTTCGGCTAAAGGAGA | 58.893 | 41.667 | 7.73 | 0.00 | 33.05 | 3.71 |
819 | 868 | 4.868734 | ACGATAAGTTTTCGGCTAAAGGAG | 59.131 | 41.667 | 18.01 | 0.00 | 40.83 | 3.69 |
821 | 870 | 4.628333 | TGACGATAAGTTTTCGGCTAAAGG | 59.372 | 41.667 | 20.09 | 0.00 | 44.95 | 3.11 |
822 | 871 | 5.220416 | CCTGACGATAAGTTTTCGGCTAAAG | 60.220 | 44.000 | 20.09 | 10.69 | 44.95 | 1.85 |
824 | 873 | 4.082081 | TCCTGACGATAAGTTTTCGGCTAA | 60.082 | 41.667 | 20.09 | 2.81 | 44.95 | 3.09 |
826 | 875 | 2.232941 | TCCTGACGATAAGTTTTCGGCT | 59.767 | 45.455 | 20.09 | 1.36 | 44.95 | 5.52 |
829 | 878 | 5.447279 | CCCAATTCCTGACGATAAGTTTTCG | 60.447 | 44.000 | 13.25 | 13.25 | 42.20 | 3.46 |
830 | 879 | 5.163652 | CCCCAATTCCTGACGATAAGTTTTC | 60.164 | 44.000 | 0.00 | 0.00 | 0.00 | 2.29 |
832 | 881 | 4.270008 | CCCCAATTCCTGACGATAAGTTT | 58.730 | 43.478 | 0.00 | 0.00 | 0.00 | 2.66 |
833 | 882 | 3.371595 | CCCCCAATTCCTGACGATAAGTT | 60.372 | 47.826 | 0.00 | 0.00 | 0.00 | 2.66 |
834 | 883 | 2.172717 | CCCCCAATTCCTGACGATAAGT | 59.827 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
835 | 884 | 2.172717 | ACCCCCAATTCCTGACGATAAG | 59.827 | 50.000 | 0.00 | 0.00 | 0.00 | 1.73 |
836 | 885 | 2.171870 | GACCCCCAATTCCTGACGATAA | 59.828 | 50.000 | 0.00 | 0.00 | 0.00 | 1.75 |
838 | 887 | 0.546598 | GACCCCCAATTCCTGACGAT | 59.453 | 55.000 | 0.00 | 0.00 | 0.00 | 3.73 |
840 | 889 | 0.255890 | ATGACCCCCAATTCCTGACG | 59.744 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
842 | 891 | 2.287584 | AGAATGACCCCCAATTCCTGA | 58.712 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
845 | 894 | 4.096681 | AGAAAAGAATGACCCCCAATTCC | 58.903 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
871 | 934 | 5.639506 | ACCAGAGACTGATAATGTTTGTTCG | 59.360 | 40.000 | 0.00 | 0.00 | 32.44 | 3.95 |
891 | 954 | 1.095228 | AGGCAACACGACACAACCAG | 61.095 | 55.000 | 0.00 | 0.00 | 41.41 | 4.00 |
909 | 1522 | 9.729023 | GATCGAATAGAGTGTATATGATCCAAG | 57.271 | 37.037 | 9.08 | 0.00 | 0.00 | 3.61 |
970 | 1583 | 7.877612 | TGATCACGAATGGCAAATACTACATAT | 59.122 | 33.333 | 0.00 | 0.00 | 0.00 | 1.78 |
971 | 1584 | 7.213678 | TGATCACGAATGGCAAATACTACATA | 58.786 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
972 | 1585 | 6.054941 | TGATCACGAATGGCAAATACTACAT | 58.945 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
973 | 1586 | 5.423886 | TGATCACGAATGGCAAATACTACA | 58.576 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
974 | 1587 | 5.984233 | TGATCACGAATGGCAAATACTAC | 57.016 | 39.130 | 0.00 | 0.00 | 0.00 | 2.73 |
975 | 1588 | 6.073819 | CGATTGATCACGAATGGCAAATACTA | 60.074 | 38.462 | 0.00 | 0.00 | 0.00 | 1.82 |
976 | 1589 | 5.277490 | CGATTGATCACGAATGGCAAATACT | 60.277 | 40.000 | 0.00 | 0.00 | 0.00 | 2.12 |
984 | 1597 | 1.333524 | GCTGCGATTGATCACGAATGG | 60.334 | 52.381 | 9.68 | 0.00 | 0.00 | 3.16 |
986 | 1599 | 0.940126 | GGCTGCGATTGATCACGAAT | 59.060 | 50.000 | 9.68 | 0.00 | 0.00 | 3.34 |
1003 | 1616 | 9.534565 | GAGGGAATTTTTATTTTTCTAGATGGC | 57.465 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
1011 | 1624 | 5.444087 | GCACGCGAGGGAATTTTTATTTTTC | 60.444 | 40.000 | 15.93 | 0.00 | 35.60 | 2.29 |
1012 | 1625 | 4.387559 | GCACGCGAGGGAATTTTTATTTTT | 59.612 | 37.500 | 15.93 | 0.00 | 35.60 | 1.94 |
1282 | 1901 | 4.602259 | CACGCGTCCACCACCTGT | 62.602 | 66.667 | 9.86 | 0.00 | 0.00 | 4.00 |
1450 | 2069 | 7.287061 | TGGGAATGGATCGAATAAACATTACT | 58.713 | 34.615 | 10.73 | 0.00 | 33.83 | 2.24 |
1503 | 2122 | 2.094700 | GCCGGAAGAAAATTTCCACCTC | 60.095 | 50.000 | 5.05 | 3.04 | 45.66 | 3.85 |
1524 | 2144 | 1.016627 | AATTCATCCGACGCACATGG | 58.983 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
1570 | 2190 | 7.514784 | TTATAATCAAACCATGAGCATCCAG | 57.485 | 36.000 | 0.00 | 0.00 | 42.53 | 3.86 |
1582 | 2202 | 9.594478 | AATTTTGGGACGATTTATAATCAAACC | 57.406 | 29.630 | 0.00 | 0.00 | 0.00 | 3.27 |
1618 | 2238 | 3.894427 | ACTTGGATGCAATGTGTGGTAAA | 59.106 | 39.130 | 0.00 | 0.00 | 0.00 | 2.01 |
1661 | 2281 | 6.797033 | GCATTCTACTGTATTTGTGTCACAAC | 59.203 | 38.462 | 17.99 | 8.50 | 37.90 | 3.32 |
1699 | 2327 | 9.175312 | CACCAGTTTCACTAGAGATTAGTACTA | 57.825 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
1700 | 2328 | 7.122948 | CCACCAGTTTCACTAGAGATTAGTACT | 59.877 | 40.741 | 0.00 | 0.00 | 0.00 | 2.73 |
1701 | 2329 | 7.093858 | ACCACCAGTTTCACTAGAGATTAGTAC | 60.094 | 40.741 | 0.00 | 0.00 | 0.00 | 2.73 |
1736 | 4933 | 4.708726 | AGCAGCCAAATTCAGTGTTATC | 57.291 | 40.909 | 0.00 | 0.00 | 0.00 | 1.75 |
1737 | 4934 | 4.281688 | ACAAGCAGCCAAATTCAGTGTTAT | 59.718 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
1766 | 4963 | 9.699410 | ACAAATAAAGGATTCAATGGATGTCTA | 57.301 | 29.630 | 0.00 | 0.00 | 0.00 | 2.59 |
1772 | 4969 | 8.980596 | AGCAATACAAATAAAGGATTCAATGGA | 58.019 | 29.630 | 0.00 | 0.00 | 0.00 | 3.41 |
1875 | 5181 | 2.232452 | AGAACTCGCATGCTACAGTCTT | 59.768 | 45.455 | 17.13 | 0.96 | 0.00 | 3.01 |
1876 | 5182 | 1.821753 | AGAACTCGCATGCTACAGTCT | 59.178 | 47.619 | 17.13 | 8.84 | 0.00 | 3.24 |
1877 | 5183 | 1.923204 | CAGAACTCGCATGCTACAGTC | 59.077 | 52.381 | 17.13 | 6.64 | 0.00 | 3.51 |
1878 | 5184 | 1.273606 | ACAGAACTCGCATGCTACAGT | 59.726 | 47.619 | 17.13 | 11.74 | 0.00 | 3.55 |
1879 | 5185 | 2.001812 | ACAGAACTCGCATGCTACAG | 57.998 | 50.000 | 17.13 | 11.08 | 0.00 | 2.74 |
1880 | 5186 | 2.455674 | AACAGAACTCGCATGCTACA | 57.544 | 45.000 | 17.13 | 0.00 | 0.00 | 2.74 |
1881 | 5187 | 2.736721 | TGAAACAGAACTCGCATGCTAC | 59.263 | 45.455 | 17.13 | 2.45 | 0.00 | 3.58 |
1882 | 5188 | 3.038788 | TGAAACAGAACTCGCATGCTA | 57.961 | 42.857 | 17.13 | 3.43 | 0.00 | 3.49 |
1883 | 5189 | 1.882912 | TGAAACAGAACTCGCATGCT | 58.117 | 45.000 | 17.13 | 0.00 | 0.00 | 3.79 |
1983 | 5289 | 4.652822 | TCTTTGACCTTTAAAGAGCTCCC | 58.347 | 43.478 | 16.98 | 0.24 | 38.76 | 4.30 |
2556 | 5867 | 8.521176 | AGTGAGTTTCGTTTCAGTAGTGTATAT | 58.479 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
2557 | 5868 | 7.806487 | CAGTGAGTTTCGTTTCAGTAGTGTATA | 59.194 | 37.037 | 0.00 | 0.00 | 0.00 | 1.47 |
2575 | 5886 | 5.995897 | GGTATTTCAGTACCAACAGTGAGTT | 59.004 | 40.000 | 0.00 | 0.00 | 42.98 | 3.01 |
2576 | 5887 | 5.307196 | AGGTATTTCAGTACCAACAGTGAGT | 59.693 | 40.000 | 0.00 | 0.00 | 45.35 | 3.41 |
2577 | 5888 | 5.794894 | AGGTATTTCAGTACCAACAGTGAG | 58.205 | 41.667 | 0.00 | 0.00 | 45.35 | 3.51 |
2658 | 5969 | 6.096846 | CCATAAAGGGTTTGGACTTTGGATAG | 59.903 | 42.308 | 0.00 | 0.00 | 37.48 | 2.08 |
2661 | 5972 | 4.156477 | CCATAAAGGGTTTGGACTTTGGA | 58.844 | 43.478 | 0.00 | 0.00 | 37.48 | 3.53 |
2662 | 5973 | 3.306710 | GCCATAAAGGGTTTGGACTTTGG | 60.307 | 47.826 | 0.00 | 0.00 | 37.48 | 3.28 |
2663 | 5974 | 3.306710 | GGCCATAAAGGGTTTGGACTTTG | 60.307 | 47.826 | 0.00 | 0.00 | 37.48 | 2.77 |
2664 | 5975 | 2.903784 | GGCCATAAAGGGTTTGGACTTT | 59.096 | 45.455 | 0.00 | 0.00 | 39.91 | 2.66 |
2665 | 5976 | 2.536066 | GGCCATAAAGGGTTTGGACTT | 58.464 | 47.619 | 0.00 | 0.00 | 35.54 | 3.01 |
2666 | 5977 | 1.273041 | GGGCCATAAAGGGTTTGGACT | 60.273 | 52.381 | 4.39 | 0.00 | 38.68 | 3.85 |
2667 | 5978 | 1.191535 | GGGCCATAAAGGGTTTGGAC | 58.808 | 55.000 | 4.39 | 0.00 | 37.86 | 4.02 |
2668 | 5979 | 0.041982 | GGGGCCATAAAGGGTTTGGA | 59.958 | 55.000 | 4.39 | 0.00 | 38.09 | 3.53 |
2669 | 5980 | 0.042581 | AGGGGCCATAAAGGGTTTGG | 59.957 | 55.000 | 4.39 | 0.00 | 38.09 | 3.28 |
2670 | 5981 | 1.194218 | CAGGGGCCATAAAGGGTTTG | 58.806 | 55.000 | 4.39 | 0.00 | 38.09 | 2.93 |
2671 | 5982 | 0.042581 | CCAGGGGCCATAAAGGGTTT | 59.957 | 55.000 | 4.39 | 0.00 | 38.09 | 3.27 |
2672 | 5983 | 0.853586 | TCCAGGGGCCATAAAGGGTT | 60.854 | 55.000 | 4.39 | 0.00 | 38.09 | 4.11 |
2673 | 5984 | 0.630478 | ATCCAGGGGCCATAAAGGGT | 60.630 | 55.000 | 4.39 | 0.00 | 38.09 | 4.34 |
2674 | 5985 | 0.562674 | AATCCAGGGGCCATAAAGGG | 59.437 | 55.000 | 4.39 | 0.00 | 38.09 | 3.95 |
2675 | 5986 | 1.481242 | GGAATCCAGGGGCCATAAAGG | 60.481 | 57.143 | 4.39 | 0.00 | 41.84 | 3.11 |
2676 | 5987 | 1.500736 | AGGAATCCAGGGGCCATAAAG | 59.499 | 52.381 | 4.39 | 0.00 | 0.00 | 1.85 |
2677 | 5988 | 1.217689 | CAGGAATCCAGGGGCCATAAA | 59.782 | 52.381 | 4.39 | 0.00 | 0.00 | 1.40 |
2678 | 5989 | 0.852842 | CAGGAATCCAGGGGCCATAA | 59.147 | 55.000 | 4.39 | 0.00 | 0.00 | 1.90 |
2679 | 5990 | 0.328450 | ACAGGAATCCAGGGGCCATA | 60.328 | 55.000 | 4.39 | 0.00 | 0.00 | 2.74 |
2680 | 5991 | 1.224003 | AACAGGAATCCAGGGGCCAT | 61.224 | 55.000 | 4.39 | 0.00 | 0.00 | 4.40 |
2681 | 5992 | 1.442886 | AAACAGGAATCCAGGGGCCA | 61.443 | 55.000 | 4.39 | 0.00 | 0.00 | 5.36 |
2682 | 5993 | 0.684479 | GAAACAGGAATCCAGGGGCC | 60.684 | 60.000 | 0.61 | 0.00 | 0.00 | 5.80 |
2683 | 5994 | 1.032114 | CGAAACAGGAATCCAGGGGC | 61.032 | 60.000 | 0.61 | 0.00 | 0.00 | 5.80 |
2684 | 5995 | 1.032114 | GCGAAACAGGAATCCAGGGG | 61.032 | 60.000 | 0.61 | 0.00 | 0.00 | 4.79 |
2702 | 6013 | 0.250513 | ACGAATCCAAGGGAGTCTGC | 59.749 | 55.000 | 10.54 | 0.00 | 43.62 | 4.26 |
2719 | 6030 | 9.305110 | GTTCATGCAAGAAATAAATTCAAAACG | 57.695 | 29.630 | 5.85 | 0.00 | 40.72 | 3.60 |
2913 | 6308 | 8.948145 | TCTCTGTTAGACTCAGATAAACACTAC | 58.052 | 37.037 | 0.00 | 0.00 | 40.46 | 2.73 |
3072 | 6467 | 3.304928 | CCAGTTTCTCCAAACACATCTGC | 60.305 | 47.826 | 0.74 | 0.00 | 43.98 | 4.26 |
3104 | 6499 | 1.553690 | AAGTGACCCAGGGACGGATG | 61.554 | 60.000 | 14.54 | 0.00 | 0.00 | 3.51 |
3107 | 6502 | 1.003718 | GAAAGTGACCCAGGGACGG | 60.004 | 63.158 | 14.54 | 0.00 | 0.00 | 4.79 |
3277 | 6674 | 9.354673 | AGACATAATGAAGTTTCTCTTTTCCAA | 57.645 | 29.630 | 0.00 | 0.00 | 36.40 | 3.53 |
3913 | 7312 | 5.106712 | CGCCTTTAGTAGCAAGAATTTGACA | 60.107 | 40.000 | 0.00 | 0.00 | 36.36 | 3.58 |
3926 | 7325 | 7.502120 | TGGTAGTATAGAACGCCTTTAGTAG | 57.498 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3927 | 7326 | 9.745018 | ATATGGTAGTATAGAACGCCTTTAGTA | 57.255 | 33.333 | 0.00 | 0.00 | 0.00 | 1.82 |
4149 | 7548 | 3.646162 | TGAACTGACATGTACTTCCCACT | 59.354 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
4195 | 7594 | 3.016031 | CACCAACTAGCATGGCATTGTA | 58.984 | 45.455 | 13.67 | 0.00 | 41.89 | 2.41 |
4237 | 7636 | 7.912250 | CACAATCATCATAAAGCTTGGTCTTAC | 59.088 | 37.037 | 0.00 | 0.00 | 0.00 | 2.34 |
4350 | 7749 | 2.586792 | CCTCTCCAGCCCCTTTCG | 59.413 | 66.667 | 0.00 | 0.00 | 0.00 | 3.46 |
4410 | 7809 | 1.414158 | GACATCTCCCATTCCTCCGA | 58.586 | 55.000 | 0.00 | 0.00 | 0.00 | 4.55 |
4577 | 7976 | 6.183360 | GCAGTGGCAATTTTAAAGCACTTATC | 60.183 | 38.462 | 0.00 | 0.00 | 40.72 | 1.75 |
4609 | 8008 | 4.640771 | AAAACAGAGTGAGGCTCCATTA | 57.359 | 40.909 | 12.86 | 0.00 | 45.21 | 1.90 |
4641 | 8042 | 3.316308 | GGGGAGTAATGAACATGATGTGC | 59.684 | 47.826 | 0.00 | 0.00 | 0.00 | 4.57 |
4662 | 8063 | 8.807118 | TGTATTCTCTAACAATAGATAGCCTGG | 58.193 | 37.037 | 0.00 | 0.00 | 37.52 | 4.45 |
4674 | 8075 | 7.062749 | AGTGTCCAACTGTATTCTCTAACAA | 57.937 | 36.000 | 0.00 | 0.00 | 37.88 | 2.83 |
4893 | 8294 | 6.739286 | GCCTATTGGAATGCATCTGCAAATTA | 60.739 | 38.462 | 9.20 | 7.55 | 45.26 | 1.40 |
4899 | 8300 | 1.271656 | GGCCTATTGGAATGCATCTGC | 59.728 | 52.381 | 0.00 | 0.00 | 37.22 | 4.26 |
4922 | 8323 | 6.140780 | TAAGATCTCTTGGCAGCTTGCAGA | 62.141 | 45.833 | 0.00 | 4.94 | 40.18 | 4.26 |
4991 | 8395 | 4.381825 | GCATCATTCCAACCTGCATAAACA | 60.382 | 41.667 | 0.00 | 0.00 | 33.13 | 2.83 |
5018 | 8422 | 5.078683 | AGTATTATCAAACCCCATGCCAT | 57.921 | 39.130 | 0.00 | 0.00 | 0.00 | 4.40 |
5136 | 8540 | 0.390998 | GCTCCTCAGGTGAAGTGAGC | 60.391 | 60.000 | 0.00 | 8.99 | 40.22 | 4.26 |
5403 | 8920 | 1.519408 | GTTACAAAGGCTTCGCTCCA | 58.481 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
5576 | 9102 | 2.675317 | GCTTCCTCGTGCACTTAGACAT | 60.675 | 50.000 | 16.19 | 0.00 | 0.00 | 3.06 |
5577 | 9103 | 1.336887 | GCTTCCTCGTGCACTTAGACA | 60.337 | 52.381 | 16.19 | 0.03 | 0.00 | 3.41 |
5578 | 9104 | 1.067495 | AGCTTCCTCGTGCACTTAGAC | 60.067 | 52.381 | 16.19 | 0.00 | 0.00 | 2.59 |
5579 | 9105 | 1.067565 | CAGCTTCCTCGTGCACTTAGA | 60.068 | 52.381 | 16.19 | 5.36 | 0.00 | 2.10 |
5580 | 9106 | 1.354040 | CAGCTTCCTCGTGCACTTAG | 58.646 | 55.000 | 16.19 | 11.88 | 0.00 | 2.18 |
5581 | 9107 | 0.037326 | CCAGCTTCCTCGTGCACTTA | 60.037 | 55.000 | 16.19 | 1.63 | 0.00 | 2.24 |
5592 | 9118 | 2.273776 | GGGCCTTCTCCAGCTTCC | 59.726 | 66.667 | 0.84 | 0.00 | 0.00 | 3.46 |
6034 | 9561 | 6.289834 | TGGCATCTCTAGTCTACTACAGTAC | 58.710 | 44.000 | 0.00 | 0.00 | 0.00 | 2.73 |
6035 | 9562 | 6.496144 | TGGCATCTCTAGTCTACTACAGTA | 57.504 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
6036 | 9563 | 5.375283 | TGGCATCTCTAGTCTACTACAGT | 57.625 | 43.478 | 0.00 | 0.00 | 0.00 | 3.55 |
6037 | 9564 | 6.701145 | TTTGGCATCTCTAGTCTACTACAG | 57.299 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
6038 | 9565 | 6.017026 | CGATTTGGCATCTCTAGTCTACTACA | 60.017 | 42.308 | 0.00 | 0.00 | 0.00 | 2.74 |
6261 | 11687 | 6.512415 | GCAATCATACCAAGTTGCATACTCTC | 60.512 | 42.308 | 0.00 | 0.00 | 44.63 | 3.20 |
6285 | 11711 | 7.775397 | ATATATTTCATTTGTTTGGCACAGC | 57.225 | 32.000 | 0.00 | 0.00 | 42.39 | 4.40 |
6366 | 11792 | 5.168569 | TCTATTGCTTGGTGTAAAGAGTCG | 58.831 | 41.667 | 0.00 | 0.00 | 0.00 | 4.18 |
6372 | 11798 | 7.759489 | ATGAACTTCTATTGCTTGGTGTAAA | 57.241 | 32.000 | 0.00 | 0.00 | 0.00 | 2.01 |
6466 | 11998 | 7.653311 | GCTGTTTTTCTTTTCTGGTGTGATAAT | 59.347 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
6485 | 12033 | 1.228552 | AGCCATGTCCCGCTGTTTT | 60.229 | 52.632 | 0.00 | 0.00 | 32.98 | 2.43 |
6614 | 12162 | 4.495422 | AGACTGCTTCCGTAAGTATGTTG | 58.505 | 43.478 | 0.00 | 0.00 | 34.99 | 3.33 |
6625 | 12173 | 2.959707 | AGGGAGTATAAGACTGCTTCCG | 59.040 | 50.000 | 0.00 | 0.00 | 45.50 | 4.30 |
6633 | 12181 | 8.296211 | AGTAGTTTTCAGAGGGAGTATAAGAC | 57.704 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
6643 | 12191 | 2.502130 | GGAGGGAGTAGTTTTCAGAGGG | 59.498 | 54.545 | 0.00 | 0.00 | 0.00 | 4.30 |
6644 | 12192 | 2.166664 | CGGAGGGAGTAGTTTTCAGAGG | 59.833 | 54.545 | 0.00 | 0.00 | 0.00 | 3.69 |
6650 | 12198 | 7.828508 | ATTTAAAAACGGAGGGAGTAGTTTT | 57.171 | 32.000 | 0.00 | 0.06 | 45.24 | 2.43 |
6682 | 12230 | 4.533311 | TCCTCCGTTCCTAACTACCAAAAT | 59.467 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
6825 | 12563 | 9.943163 | GCCAAAATAAATAAACACACAAATGTT | 57.057 | 25.926 | 0.00 | 0.00 | 44.76 | 2.71 |
6827 | 12565 | 9.810231 | GAGCCAAAATAAATAAACACACAAATG | 57.190 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
6987 | 12727 | 1.064832 | GGCAGATTCTGAAGAAGGGCT | 60.065 | 52.381 | 17.87 | 1.98 | 37.48 | 5.19 |
6992 | 12732 | 2.179427 | TCGGAGGCAGATTCTGAAGAA | 58.821 | 47.619 | 17.87 | 0.00 | 38.56 | 2.52 |
7042 | 12782 | 0.677731 | ATGTGGTTGCGATGGAGGTG | 60.678 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
7074 | 12816 | 1.150536 | TGACAGGACCTTTGTGGCC | 59.849 | 57.895 | 0.00 | 0.00 | 40.22 | 5.36 |
7116 | 12858 | 8.560124 | AGATGGATCTCATTAGGTTCTTTAGT | 57.440 | 34.615 | 0.00 | 0.00 | 35.97 | 2.24 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.