Multiple sequence alignment - TraesCS4A01G215600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G215600 chr4A 100.000 5077 0 0 1 5077 514077413 514082489 0.000000e+00 9376.0
1 TraesCS4A01G215600 chr4A 83.908 174 25 2 3397 3568 363744533 363744705 4.070000e-36 163.0
2 TraesCS4A01G215600 chr4A 85.034 147 18 4 4930 5075 105245704 105245561 4.100000e-31 147.0
3 TraesCS4A01G215600 chr4A 93.939 66 4 0 1 66 714310624 714310689 3.230000e-17 100.0
4 TraesCS4A01G215600 chr4B 92.600 4270 190 48 856 5077 106229299 106225108 0.000000e+00 6019.0
5 TraesCS4A01G215600 chr4B 93.631 157 8 2 2597 2752 146469370 146469215 3.060000e-57 233.0
6 TraesCS4A01G215600 chr4B 90.441 136 13 0 586 721 106230472 106230337 4.040000e-41 180.0
7 TraesCS4A01G215600 chr4D 93.996 1832 69 13 2467 4277 74079640 74077829 0.000000e+00 2736.0
8 TraesCS4A01G215600 chr4D 89.365 1890 122 34 583 2426 74081493 74079637 0.000000e+00 2303.0
9 TraesCS4A01G215600 chr4D 91.769 814 34 12 4273 5076 74076645 74075855 0.000000e+00 1101.0
10 TraesCS4A01G215600 chr7D 90.494 526 42 3 67 586 88486121 88486644 0.000000e+00 688.0
11 TraesCS4A01G215600 chr7D 93.590 156 9 1 2598 2752 34373472 34373317 1.100000e-56 231.0
12 TraesCS4A01G215600 chr7D 84.615 169 22 4 3413 3579 34757018 34756852 1.130000e-36 165.0
13 TraesCS4A01G215600 chr7D 80.741 135 22 4 4796 4929 388716674 388716543 8.990000e-18 102.0
14 TraesCS4A01G215600 chr7B 87.121 528 62 2 65 586 84649691 84649164 1.220000e-165 593.0
15 TraesCS4A01G215600 chr7B 86.774 310 40 1 272 580 621554722 621554413 1.350000e-90 344.0
16 TraesCS4A01G215600 chr7B 76.214 206 36 10 4718 4920 720240405 720240600 4.180000e-16 97.1
17 TraesCS4A01G215600 chr7B 79.259 135 24 4 4796 4929 383855826 383855695 1.950000e-14 91.6
18 TraesCS4A01G215600 chr2D 90.191 418 35 2 175 586 168944808 168944391 1.610000e-149 540.0
19 TraesCS4A01G215600 chr2D 90.000 140 14 0 3427 3566 122864250 122864111 1.120000e-41 182.0
20 TraesCS4A01G215600 chr2D 83.784 148 22 2 4930 5077 524329822 524329967 6.850000e-29 139.0
21 TraesCS4A01G215600 chr1D 84.762 525 73 3 65 583 27923066 27922543 2.100000e-143 520.0
22 TraesCS4A01G215600 chr5B 83.523 528 81 2 65 586 404438222 404437695 5.910000e-134 488.0
23 TraesCS4A01G215600 chr3A 76.637 886 146 44 4208 5077 353643432 353644272 2.810000e-117 433.0
24 TraesCS4A01G215600 chr3A 93.590 156 9 1 2597 2751 582283370 582283215 1.100000e-56 231.0
25 TraesCS4A01G215600 chr7A 94.194 155 8 1 2598 2751 421785160 421785006 8.500000e-58 235.0
26 TraesCS4A01G215600 chr7A 86.335 161 19 3 3407 3566 201986997 201987155 6.760000e-39 172.0
27 TraesCS4A01G215600 chr5A 78.571 378 59 15 4643 5020 613576234 613575879 3.950000e-56 230.0
28 TraesCS4A01G215600 chr5A 92.453 159 11 1 2600 2758 321920631 321920788 5.110000e-55 226.0
29 TraesCS4A01G215600 chr5A 76.471 306 44 18 4360 4645 613576562 613576265 1.910000e-29 141.0
30 TraesCS4A01G215600 chr5A 73.420 459 81 23 4566 5021 181438636 181438216 3.190000e-27 134.0
31 TraesCS4A01G215600 chr6A 92.500 160 10 2 2600 2757 532026612 532026771 1.420000e-55 228.0
32 TraesCS4A01G215600 chr6A 86.624 157 20 1 3411 3567 555729345 555729190 6.760000e-39 172.0
33 TraesCS4A01G215600 chr6A 84.967 153 18 4 4926 5077 532024703 532024851 3.170000e-32 150.0
34 TraesCS4A01G215600 chr3D 91.071 168 11 4 2593 2757 322435451 322435285 1.840000e-54 224.0
35 TraesCS4A01G215600 chr3D 89.231 65 7 0 1 65 347418050 347417986 1.170000e-11 82.4
36 TraesCS4A01G215600 chrUn 83.920 199 23 7 4449 4644 134225141 134224949 1.120000e-41 182.0
37 TraesCS4A01G215600 chr6D 87.261 157 19 1 3411 3567 410398433 410398278 1.450000e-40 178.0
38 TraesCS4A01G215600 chr6B 87.261 157 19 1 3411 3567 617176736 617176581 1.450000e-40 178.0
39 TraesCS4A01G215600 chr6B 83.660 153 20 5 4926 5077 578097892 578098040 6.850000e-29 139.0
40 TraesCS4A01G215600 chr2A 87.162 148 17 2 4930 5077 669882665 669882810 3.140000e-37 167.0
41 TraesCS4A01G215600 chr3B 84.667 150 20 3 4926 5075 577495818 577495964 4.100000e-31 147.0
42 TraesCS4A01G215600 chr1A 78.698 169 29 6 4763 4929 460866698 460866861 6.950000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G215600 chr4A 514077413 514082489 5076 False 9376.000000 9376 100.0000 1 5077 1 chr4A.!!$F2 5076
1 TraesCS4A01G215600 chr4B 106225108 106230472 5364 True 3099.500000 6019 91.5205 586 5077 2 chr4B.!!$R2 4491
2 TraesCS4A01G215600 chr4D 74075855 74081493 5638 True 2046.666667 2736 91.7100 583 5076 3 chr4D.!!$R1 4493
3 TraesCS4A01G215600 chr7D 88486121 88486644 523 False 688.000000 688 90.4940 67 586 1 chr7D.!!$F1 519
4 TraesCS4A01G215600 chr7B 84649164 84649691 527 True 593.000000 593 87.1210 65 586 1 chr7B.!!$R1 521
5 TraesCS4A01G215600 chr1D 27922543 27923066 523 True 520.000000 520 84.7620 65 583 1 chr1D.!!$R1 518
6 TraesCS4A01G215600 chr5B 404437695 404438222 527 True 488.000000 488 83.5230 65 586 1 chr5B.!!$R1 521
7 TraesCS4A01G215600 chr3A 353643432 353644272 840 False 433.000000 433 76.6370 4208 5077 1 chr3A.!!$F1 869

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
919 1869 1.215382 GAAACGGGCCAATTCCTGC 59.785 57.895 4.39 0.0 35.90 4.85 F
1266 2231 0.179054 GATCCGCCCCTGGTTTACTC 60.179 60.000 0.00 0.0 0.00 2.59 F
1894 2873 0.465824 TCCGTTCGGAGAGGGAGATC 60.466 60.000 10.00 0.0 36.31 2.75 F
2031 3010 1.497991 CTGAGAACAAACGGCGAGAA 58.502 50.000 16.62 0.0 0.00 2.87 F
2779 3776 2.045047 TCCTCACTCTTTCCCATCTCCT 59.955 50.000 0.00 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1870 2849 0.682209 CCCTCTCCGAACGGACCTTA 60.682 60.000 12.04 0.0 39.76 2.69 R
2805 3802 1.003573 GGAGACAGGGGATGGGAGT 59.996 63.158 0.00 0.0 0.00 3.85 R
3831 4853 0.323725 CTGGTTGATCCAACAGGGGG 60.324 60.000 3.87 0.0 46.59 5.40 R
3832 4854 0.967380 GCTGGTTGATCCAACAGGGG 60.967 60.000 13.36 0.0 46.59 4.79 R
4523 6761 1.099295 ACTGCCATGCCACATCATCG 61.099 55.000 0.00 0.0 0.00 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.725206 ATATAAGAAACTAGAAGGTAGACCCAA 57.275 33.333 0.00 0.00 36.42 4.12
31 32 6.954352 AAGAAACTAGAAGGTAGACCCAAT 57.046 37.500 0.00 0.00 36.42 3.16
32 33 9.725206 ATAAGAAACTAGAAGGTAGACCCAATA 57.275 33.333 0.00 0.00 36.42 1.90
33 34 7.421087 AGAAACTAGAAGGTAGACCCAATAC 57.579 40.000 0.00 0.00 36.42 1.89
34 35 6.958192 AGAAACTAGAAGGTAGACCCAATACA 59.042 38.462 0.00 0.00 36.42 2.29
35 36 6.541934 AACTAGAAGGTAGACCCAATACAC 57.458 41.667 0.00 0.00 36.42 2.90
36 37 5.586877 ACTAGAAGGTAGACCCAATACACA 58.413 41.667 0.00 0.00 36.42 3.72
37 38 6.021030 ACTAGAAGGTAGACCCAATACACAA 58.979 40.000 0.00 0.00 36.42 3.33
38 39 6.672657 ACTAGAAGGTAGACCCAATACACAAT 59.327 38.462 0.00 0.00 36.42 2.71
39 40 7.842743 ACTAGAAGGTAGACCCAATACACAATA 59.157 37.037 0.00 0.00 36.42 1.90
40 41 7.691993 AGAAGGTAGACCCAATACACAATAT 57.308 36.000 0.00 0.00 36.42 1.28
41 42 7.509546 AGAAGGTAGACCCAATACACAATATG 58.490 38.462 0.00 0.00 36.42 1.78
42 43 5.621193 AGGTAGACCCAATACACAATATGC 58.379 41.667 0.00 0.00 36.42 3.14
43 44 5.131977 AGGTAGACCCAATACACAATATGCA 59.868 40.000 0.00 0.00 36.42 3.96
44 45 5.238650 GGTAGACCCAATACACAATATGCAC 59.761 44.000 0.00 0.00 0.00 4.57
45 46 4.854173 AGACCCAATACACAATATGCACA 58.146 39.130 0.00 0.00 0.00 4.57
46 47 5.448654 AGACCCAATACACAATATGCACAT 58.551 37.500 0.00 0.00 0.00 3.21
47 48 6.600388 AGACCCAATACACAATATGCACATA 58.400 36.000 0.00 0.00 0.00 2.29
48 49 6.712095 AGACCCAATACACAATATGCACATAG 59.288 38.462 0.00 0.00 0.00 2.23
49 50 5.241506 ACCCAATACACAATATGCACATAGC 59.758 40.000 0.00 0.00 45.96 2.97
80 81 3.805422 TCAACACCTACAACATCGAACAC 59.195 43.478 0.00 0.00 0.00 3.32
117 118 2.290260 ACTCCATCGCCAAGATTGTTGA 60.290 45.455 0.00 0.00 37.52 3.18
122 123 4.380761 CCATCGCCAAGATTGTTGATTCAA 60.381 41.667 0.00 0.00 37.52 2.69
123 124 4.159377 TCGCCAAGATTGTTGATTCAAC 57.841 40.909 20.27 20.27 43.78 3.18
143 144 5.887598 TCAACTATAATTGCAGCATCACCTT 59.112 36.000 0.00 0.00 0.00 3.50
153 154 2.092753 CAGCATCACCTTCCATGTAGGT 60.093 50.000 10.21 10.21 46.87 3.08
165 166 2.634940 CCATGTAGGTATCTGGGTCTGG 59.365 54.545 0.00 0.00 0.00 3.86
320 326 1.586154 CCGCTGCAACGAAATTCCCT 61.586 55.000 11.83 0.00 34.06 4.20
403 410 5.048991 GTCCACGTTGATTTTCACAATACCT 60.049 40.000 0.00 0.00 0.00 3.08
425 432 3.711704 TGAGTCAGGTTTCCTCCATATCC 59.288 47.826 0.00 0.00 0.00 2.59
440 447 3.512680 CATATCCGGTCTATCTTTCGGC 58.487 50.000 0.00 0.00 41.98 5.54
512 519 1.557443 CGACAAGGCCGTTCTGTCAC 61.557 60.000 22.03 5.51 0.00 3.67
641 648 2.633481 TCTCATGATGAGGCTGGAGATG 59.367 50.000 21.27 0.00 44.39 2.90
656 663 5.048434 GCTGGAGATGCATTTAATACCTTCC 60.048 44.000 0.00 0.00 0.00 3.46
723 730 7.900782 TTAAGCTGCTACGTTTATCTTTTCT 57.099 32.000 0.90 0.00 0.00 2.52
724 731 6.803154 AAGCTGCTACGTTTATCTTTTCTT 57.197 33.333 0.90 0.00 0.00 2.52
725 732 6.803154 AGCTGCTACGTTTATCTTTTCTTT 57.197 33.333 0.00 0.00 0.00 2.52
726 733 6.832804 AGCTGCTACGTTTATCTTTTCTTTC 58.167 36.000 0.00 0.00 0.00 2.62
727 734 5.728507 GCTGCTACGTTTATCTTTTCTTTCG 59.271 40.000 0.00 0.00 0.00 3.46
735 742 6.523201 CGTTTATCTTTTCTTTCGAACATGGG 59.477 38.462 0.00 0.00 0.00 4.00
741 748 3.266510 TCTTTCGAACATGGGATCCAG 57.733 47.619 15.23 5.27 36.75 3.86
757 764 5.385198 GGATCCAGTATTGCTTTATTGGGA 58.615 41.667 6.95 0.00 31.65 4.37
768 775 7.546250 TTGCTTTATTGGGAGGATTGTTTTA 57.454 32.000 0.00 0.00 0.00 1.52
770 777 8.830915 TGCTTTATTGGGAGGATTGTTTTATA 57.169 30.769 0.00 0.00 0.00 0.98
818 836 6.910433 CCGTGTTACCTAATAAAACATGCATC 59.090 38.462 0.00 0.00 38.31 3.91
821 839 7.700656 GTGTTACCTAATAAAACATGCATCCAC 59.299 37.037 0.00 0.00 35.72 4.02
827 845 8.465999 CCTAATAAAACATGCATCCACTACAAA 58.534 33.333 0.00 0.00 0.00 2.83
832 850 7.656707 AAACATGCATCCACTACAAATTTTC 57.343 32.000 0.00 0.00 0.00 2.29
833 851 6.594788 ACATGCATCCACTACAAATTTTCT 57.405 33.333 0.00 0.00 0.00 2.52
838 856 7.147312 TGCATCCACTACAAATTTTCTTGAAG 58.853 34.615 0.00 0.00 0.00 3.02
890 1840 5.459536 AGATTGCAGGGAAAAGAAAGAAC 57.540 39.130 0.00 0.00 0.00 3.01
919 1869 1.215382 GAAACGGGCCAATTCCTGC 59.785 57.895 4.39 0.00 35.90 4.85
994 1951 4.617959 CGTAAGTCTCTGTTCTTTCACCA 58.382 43.478 0.00 0.00 0.00 4.17
995 1952 4.681942 CGTAAGTCTCTGTTCTTTCACCAG 59.318 45.833 0.00 0.00 0.00 4.00
1007 1964 4.410400 CACCAGCCCTCCCGTTCC 62.410 72.222 0.00 0.00 0.00 3.62
1109 2072 1.774300 GCCCTTCCCTTCCCTTTCA 59.226 57.895 0.00 0.00 0.00 2.69
1110 2073 0.336392 GCCCTTCCCTTCCCTTTCAT 59.664 55.000 0.00 0.00 0.00 2.57
1131 2095 0.391927 TTTCCATAACCGAGCACCCG 60.392 55.000 0.00 0.00 0.00 5.28
1167 2132 6.691508 CAGATATTTGTATCCGGATCTGACA 58.308 40.000 23.08 17.45 41.76 3.58
1192 2157 0.250858 ACCAGCACAGCAGCATTGTA 60.251 50.000 0.00 0.00 36.85 2.41
1217 2182 6.210984 AGAGTACCCACTAACTTCGATTTCTT 59.789 38.462 0.00 0.00 34.21 2.52
1237 2202 6.357579 TCTTGCAAAAATTATGACCCATGT 57.642 33.333 0.00 0.00 0.00 3.21
1266 2231 0.179054 GATCCGCCCCTGGTTTACTC 60.179 60.000 0.00 0.00 0.00 2.59
1267 2232 1.632965 ATCCGCCCCTGGTTTACTCC 61.633 60.000 0.00 0.00 0.00 3.85
1286 2251 1.390664 CGCAATTTCTTCGCAGCGTG 61.391 55.000 15.93 9.39 40.25 5.34
1388 2353 1.153469 GCTCCTGTAGCCACTCAGC 60.153 63.158 0.00 0.00 46.25 4.26
1389 2354 1.519719 CTCCTGTAGCCACTCAGCC 59.480 63.158 0.00 0.00 0.00 4.85
1390 2355 2.185350 CCTGTAGCCACTCAGCCG 59.815 66.667 0.00 0.00 0.00 5.52
1391 2356 2.185350 CTGTAGCCACTCAGCCGG 59.815 66.667 0.00 0.00 0.00 6.13
1392 2357 3.376935 CTGTAGCCACTCAGCCGGG 62.377 68.421 2.18 0.00 0.00 5.73
1393 2358 4.162690 GTAGCCACTCAGCCGGGG 62.163 72.222 2.18 0.00 0.00 5.73
1429 2406 1.885871 GGCCATCAAACACCTCAGC 59.114 57.895 0.00 0.00 0.00 4.26
1430 2407 0.895100 GGCCATCAAACACCTCAGCA 60.895 55.000 0.00 0.00 0.00 4.41
1494 2472 6.542370 TCCTCTTTTGTGTCTTCTTCGAATTT 59.458 34.615 0.00 0.00 0.00 1.82
1511 2489 4.875536 CGAATTTGTCCAGGTCATGTCATA 59.124 41.667 0.00 0.00 0.00 2.15
1549 2527 2.159430 CGTGCAGAATCGGTTCATTTCA 59.841 45.455 11.72 0.00 36.79 2.69
1550 2528 3.181507 CGTGCAGAATCGGTTCATTTCAT 60.182 43.478 11.72 0.00 36.79 2.57
1553 2531 4.142622 TGCAGAATCGGTTCATTTCATGTC 60.143 41.667 11.72 0.00 36.79 3.06
1561 2539 4.487948 GGTTCATTTCATGTCATGGTGTG 58.512 43.478 12.90 8.90 0.00 3.82
1562 2540 4.218200 GGTTCATTTCATGTCATGGTGTGA 59.782 41.667 12.90 10.83 0.00 3.58
1585 2563 1.630244 CTTCCTCTGGTTTCTGCGCG 61.630 60.000 0.00 0.00 0.00 6.86
1586 2564 3.121030 CCTCTGGTTTCTGCGCGG 61.121 66.667 10.86 10.86 0.00 6.46
1598 2576 3.567797 GCGCGGAGGTTCTCATGC 61.568 66.667 8.83 0.00 32.59 4.06
1623 2601 1.226030 GGTTTGTCGACGGTGGGAAG 61.226 60.000 11.62 0.00 0.00 3.46
1761 2740 5.779922 TGTGTTACTTGCAGGAACTACTAG 58.220 41.667 1.40 0.00 36.02 2.57
1762 2741 5.303589 TGTGTTACTTGCAGGAACTACTAGT 59.696 40.000 1.40 0.00 40.60 2.57
1763 2742 5.862860 GTGTTACTTGCAGGAACTACTAGTC 59.137 44.000 1.40 0.00 37.20 2.59
1764 2743 5.773680 TGTTACTTGCAGGAACTACTAGTCT 59.226 40.000 1.40 0.00 37.20 3.24
1765 2744 6.944290 TGTTACTTGCAGGAACTACTAGTCTA 59.056 38.462 1.40 0.00 37.20 2.59
1766 2745 5.900865 ACTTGCAGGAACTACTAGTCTAC 57.099 43.478 1.40 0.00 32.65 2.59
1767 2746 5.572252 ACTTGCAGGAACTACTAGTCTACT 58.428 41.667 1.40 0.00 32.65 2.57
1770 2749 7.337436 ACTTGCAGGAACTACTAGTCTACTAAG 59.663 40.741 1.40 0.00 32.65 2.18
1791 2770 5.326200 AGTATATAACATCCAGTAGCCGC 57.674 43.478 0.00 0.00 0.00 6.53
1798 2777 2.093181 ACATCCAGTAGCCGCAATGTTA 60.093 45.455 0.00 0.00 0.00 2.41
1839 2818 6.375455 ACTGCTTGTTATATTCTTTGTCTGGG 59.625 38.462 0.00 0.00 0.00 4.45
1870 2849 2.270352 TGAACAAAGAGGCGGTTGAT 57.730 45.000 5.11 0.00 0.00 2.57
1894 2873 0.465824 TCCGTTCGGAGAGGGAGATC 60.466 60.000 10.00 0.00 36.31 2.75
1948 2927 7.443272 CAGATGAGATTGGTATAGCATTTCACA 59.557 37.037 5.28 10.74 0.00 3.58
1983 2962 2.760374 CTCTCCGGATACATTTCTGGC 58.240 52.381 3.57 0.00 41.27 4.85
2031 3010 1.497991 CTGAGAACAAACGGCGAGAA 58.502 50.000 16.62 0.00 0.00 2.87
2121 3100 2.320681 TAGTAGCTGGTGTGGGAGTT 57.679 50.000 0.00 0.00 0.00 3.01
2175 3154 4.511527 ACATGTGCTCTTCTACTCCATTG 58.488 43.478 0.00 0.00 0.00 2.82
2240 3228 4.187694 GCTGAGATTGAAGTACCTCTTGG 58.812 47.826 0.00 0.00 36.40 3.61
2247 3235 5.367945 TTGAAGTACCTCTTGGTTCTGTT 57.632 39.130 0.00 0.00 46.05 3.16
2256 3244 7.272144 ACCTCTTGGTTCTGTTATATCCTTT 57.728 36.000 0.00 0.00 46.05 3.11
2291 3279 5.757808 GGCAACAATTCAACAACCACTAAAT 59.242 36.000 0.00 0.00 0.00 1.40
2292 3280 6.292811 GGCAACAATTCAACAACCACTAAATG 60.293 38.462 0.00 0.00 0.00 2.32
2460 3448 4.891992 ACTGTAGCTGTGTAATTCCTGT 57.108 40.909 0.00 0.00 0.00 4.00
2470 3458 6.621596 GCTGTGTAATTCCTGTGTGAGAAATC 60.622 42.308 0.00 0.00 0.00 2.17
2496 3484 3.405831 TGGATGTTTGCAGAACTGAGAG 58.594 45.455 5.97 0.00 0.00 3.20
2498 3486 3.434984 GGATGTTTGCAGAACTGAGAGAC 59.565 47.826 5.97 0.00 0.00 3.36
2629 3620 7.254795 CCCTCCGTTCACAAATATAAGATGTTC 60.255 40.741 0.00 0.00 0.00 3.18
2669 3660 5.751028 GGACTACATACAGACTGAAATGAGC 59.249 44.000 21.47 11.42 0.00 4.26
2673 3664 5.423015 ACATACAGACTGAAATGAGCGAAT 58.577 37.500 21.47 3.71 0.00 3.34
2779 3776 2.045047 TCCTCACTCTTTCCCATCTCCT 59.955 50.000 0.00 0.00 0.00 3.69
2805 3802 7.083858 GCATTTGCTAGTTTTATCTTGTCACA 58.916 34.615 0.00 0.00 38.21 3.58
2840 3837 6.268847 CCTGTCTCCTGTTTAGGCTAGATAAT 59.731 42.308 0.00 0.00 44.22 1.28
2879 3876 8.826765 TCCTTATGTTCCTCTAGTTTCTCATTT 58.173 33.333 0.00 0.00 0.00 2.32
2924 3921 5.444176 AGATTCATCTGGTCCTTCCATTTC 58.556 41.667 0.00 0.00 46.12 2.17
2952 3949 9.671279 TGTAAATCCATGCATACTATATTCTGG 57.329 33.333 0.00 0.00 0.00 3.86
2953 3950 9.672673 GTAAATCCATGCATACTATATTCTGGT 57.327 33.333 0.00 0.00 0.00 4.00
3416 4415 7.496920 GCATCTTTGCCAGCATATATGATACTA 59.503 37.037 17.10 0.51 43.38 1.82
3423 4422 5.828328 CCAGCATATATGATACTACCTCCGA 59.172 44.000 17.10 0.00 0.00 4.55
3509 4509 4.946772 TGTTTGTTCACTCATTTCTGTCCA 59.053 37.500 0.00 0.00 0.00 4.02
3577 4577 6.239944 GGACAGAGGGAGTACTAGCTAGATTA 60.240 46.154 27.45 7.37 0.00 1.75
3831 4853 2.644676 AGGCTTTCGGCTAGGATTTTC 58.355 47.619 0.00 0.00 45.31 2.29
3832 4854 1.676529 GGCTTTCGGCTAGGATTTTCC 59.323 52.381 0.00 0.00 41.46 3.13
3890 4912 0.994995 CGGTTGCAGTCTGAGAATCG 59.005 55.000 3.32 3.74 38.61 3.34
3976 5002 6.767902 TCTCTTGCTTGCCATTATTTACCTAG 59.232 38.462 0.00 0.00 0.00 3.02
3977 5003 6.423182 TCTTGCTTGCCATTATTTACCTAGT 58.577 36.000 0.00 0.00 0.00 2.57
3978 5004 7.570132 TCTTGCTTGCCATTATTTACCTAGTA 58.430 34.615 0.00 0.00 0.00 1.82
3979 5005 7.497909 TCTTGCTTGCCATTATTTACCTAGTAC 59.502 37.037 0.00 0.00 0.00 2.73
4085 5111 2.496899 ACCGTTCTCATGCCAAATCT 57.503 45.000 0.00 0.00 0.00 2.40
4197 5223 3.118408 GGTGCACTTGGGTACATCATCTA 60.118 47.826 17.98 0.00 0.00 1.98
4206 5232 7.450014 ACTTGGGTACATCATCTATCTGTCTAG 59.550 40.741 0.00 0.00 0.00 2.43
4406 6629 6.899393 AAATTGGATTGCAGTTAAGAGTGA 57.101 33.333 0.00 0.00 0.00 3.41
4480 6710 1.474478 ACCGTGTCTATGAGAGCACAG 59.526 52.381 0.00 0.00 30.79 3.66
4523 6761 3.002656 CGGATGACTTACATGCATGAACC 59.997 47.826 32.75 15.58 45.52 3.62
4702 6944 8.378172 TCTAATAAACAAGTGAAGGTCAACTG 57.622 34.615 0.00 0.00 0.00 3.16
4740 6982 4.326766 CCAAGCGCCCAACACACG 62.327 66.667 2.29 0.00 0.00 4.49
5026 7272 4.568152 TTCTCATGCATAGATCGAACGA 57.432 40.909 0.00 0.00 0.00 3.85
5030 7276 3.989817 TCATGCATAGATCGAACGAATGG 59.010 43.478 0.00 0.00 0.00 3.16
5032 7278 3.123050 TGCATAGATCGAACGAATGGTG 58.877 45.455 0.12 0.75 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 9.725206 TTGGGTCTACCTTCTAGTTTCTTATAT 57.275 33.333 0.00 0.00 41.11 0.86
5 6 9.725206 ATTGGGTCTACCTTCTAGTTTCTTATA 57.275 33.333 0.00 0.00 41.11 0.98
6 7 8.625467 ATTGGGTCTACCTTCTAGTTTCTTAT 57.375 34.615 0.00 0.00 41.11 1.73
7 8 8.975295 GTATTGGGTCTACCTTCTAGTTTCTTA 58.025 37.037 0.00 0.00 41.11 2.10
8 9 6.954352 ATTGGGTCTACCTTCTAGTTTCTT 57.046 37.500 0.00 0.00 41.11 2.52
9 10 6.958192 TGTATTGGGTCTACCTTCTAGTTTCT 59.042 38.462 0.00 0.00 41.11 2.52
10 11 7.040494 GTGTATTGGGTCTACCTTCTAGTTTC 58.960 42.308 0.00 0.00 41.11 2.78
11 12 6.499350 TGTGTATTGGGTCTACCTTCTAGTTT 59.501 38.462 0.00 0.00 41.11 2.66
12 13 6.021030 TGTGTATTGGGTCTACCTTCTAGTT 58.979 40.000 0.00 0.00 41.11 2.24
13 14 5.586877 TGTGTATTGGGTCTACCTTCTAGT 58.413 41.667 0.00 0.00 41.11 2.57
14 15 6.540438 TTGTGTATTGGGTCTACCTTCTAG 57.460 41.667 0.00 0.00 41.11 2.43
15 16 8.647796 CATATTGTGTATTGGGTCTACCTTCTA 58.352 37.037 0.00 0.00 41.11 2.10
16 17 7.509546 CATATTGTGTATTGGGTCTACCTTCT 58.490 38.462 0.00 0.00 41.11 2.85
17 18 6.204882 GCATATTGTGTATTGGGTCTACCTTC 59.795 42.308 0.00 0.00 41.11 3.46
18 19 6.062095 GCATATTGTGTATTGGGTCTACCTT 58.938 40.000 0.00 0.00 41.11 3.50
19 20 5.131977 TGCATATTGTGTATTGGGTCTACCT 59.868 40.000 0.00 0.00 41.11 3.08
20 21 5.238650 GTGCATATTGTGTATTGGGTCTACC 59.761 44.000 0.00 0.00 40.81 3.18
21 22 5.820423 TGTGCATATTGTGTATTGGGTCTAC 59.180 40.000 0.00 0.00 0.00 2.59
22 23 5.995446 TGTGCATATTGTGTATTGGGTCTA 58.005 37.500 0.00 0.00 0.00 2.59
23 24 4.854173 TGTGCATATTGTGTATTGGGTCT 58.146 39.130 0.00 0.00 0.00 3.85
24 25 5.772825 ATGTGCATATTGTGTATTGGGTC 57.227 39.130 0.00 0.00 0.00 4.46
25 26 5.241506 GCTATGTGCATATTGTGTATTGGGT 59.758 40.000 0.00 0.00 42.31 4.51
26 27 5.702865 GCTATGTGCATATTGTGTATTGGG 58.297 41.667 0.00 0.00 42.31 4.12
41 42 5.050091 GGTGTTGAGTATATGTGCTATGTGC 60.050 44.000 0.00 0.00 43.25 4.57
42 43 6.283694 AGGTGTTGAGTATATGTGCTATGTG 58.716 40.000 0.00 0.00 0.00 3.21
43 44 6.485830 AGGTGTTGAGTATATGTGCTATGT 57.514 37.500 0.00 0.00 0.00 2.29
44 45 7.433680 TGTAGGTGTTGAGTATATGTGCTATG 58.566 38.462 0.00 0.00 0.00 2.23
45 46 7.597288 TGTAGGTGTTGAGTATATGTGCTAT 57.403 36.000 0.00 0.00 0.00 2.97
46 47 7.093684 TGTTGTAGGTGTTGAGTATATGTGCTA 60.094 37.037 0.00 0.00 0.00 3.49
47 48 5.932619 TGTAGGTGTTGAGTATATGTGCT 57.067 39.130 0.00 0.00 0.00 4.40
48 49 5.872617 TGTTGTAGGTGTTGAGTATATGTGC 59.127 40.000 0.00 0.00 0.00 4.57
49 50 7.043391 CGATGTTGTAGGTGTTGAGTATATGTG 60.043 40.741 0.00 0.00 0.00 3.21
50 51 6.978659 CGATGTTGTAGGTGTTGAGTATATGT 59.021 38.462 0.00 0.00 0.00 2.29
51 52 7.200455 TCGATGTTGTAGGTGTTGAGTATATG 58.800 38.462 0.00 0.00 0.00 1.78
52 53 7.342769 TCGATGTTGTAGGTGTTGAGTATAT 57.657 36.000 0.00 0.00 0.00 0.86
53 54 6.762702 TCGATGTTGTAGGTGTTGAGTATA 57.237 37.500 0.00 0.00 0.00 1.47
54 55 5.654603 TCGATGTTGTAGGTGTTGAGTAT 57.345 39.130 0.00 0.00 0.00 2.12
55 56 5.221283 TGTTCGATGTTGTAGGTGTTGAGTA 60.221 40.000 0.00 0.00 0.00 2.59
56 57 4.056050 GTTCGATGTTGTAGGTGTTGAGT 58.944 43.478 0.00 0.00 0.00 3.41
57 58 4.055360 TGTTCGATGTTGTAGGTGTTGAG 58.945 43.478 0.00 0.00 0.00 3.02
58 59 3.805422 GTGTTCGATGTTGTAGGTGTTGA 59.195 43.478 0.00 0.00 0.00 3.18
59 60 3.558006 TGTGTTCGATGTTGTAGGTGTTG 59.442 43.478 0.00 0.00 0.00 3.33
60 61 3.799366 TGTGTTCGATGTTGTAGGTGTT 58.201 40.909 0.00 0.00 0.00 3.32
61 62 3.462483 TGTGTTCGATGTTGTAGGTGT 57.538 42.857 0.00 0.00 0.00 4.16
62 63 3.807622 AGTTGTGTTCGATGTTGTAGGTG 59.192 43.478 0.00 0.00 0.00 4.00
63 64 4.067972 AGTTGTGTTCGATGTTGTAGGT 57.932 40.909 0.00 0.00 0.00 3.08
117 118 6.548622 AGGTGATGCTGCAATTATAGTTGAAT 59.451 34.615 6.36 0.15 0.00 2.57
122 123 4.823989 GGAAGGTGATGCTGCAATTATAGT 59.176 41.667 6.36 0.00 0.00 2.12
123 124 4.823442 TGGAAGGTGATGCTGCAATTATAG 59.177 41.667 6.36 0.00 0.00 1.31
143 144 3.576861 CAGACCCAGATACCTACATGGA 58.423 50.000 0.00 0.00 39.71 3.41
153 154 2.134287 GCGGCTCCAGACCCAGATA 61.134 63.158 0.00 0.00 0.00 1.98
165 166 1.435408 GAATGCTCTTGAGGCGGCTC 61.435 60.000 30.53 30.53 0.00 4.70
270 276 0.254747 TTGGCTTATGTCCCTTCGGG 59.745 55.000 0.00 0.00 46.11 5.14
283 289 1.447217 GCAAGCTGGGTTTTGGCTT 59.553 52.632 0.00 0.00 45.57 4.35
286 292 2.339712 CGGCAAGCTGGGTTTTGG 59.660 61.111 0.00 0.00 0.00 3.28
310 316 3.878778 AGAGATGACCAAGGGAATTTCG 58.121 45.455 0.00 0.00 0.00 3.46
320 326 1.522668 CCGTTGCAAGAGATGACCAA 58.477 50.000 0.00 0.00 0.00 3.67
378 385 4.909696 ATTGTGAAAATCAACGTGGACA 57.090 36.364 0.00 0.00 0.00 4.02
403 410 3.711704 GGATATGGAGGAAACCTGACTCA 59.288 47.826 0.00 0.00 31.76 3.41
425 432 1.571919 CCAAGCCGAAAGATAGACCG 58.428 55.000 0.00 0.00 0.00 4.79
440 447 3.132925 CAAATTCACCAAACCAGCCAAG 58.867 45.455 0.00 0.00 0.00 3.61
480 487 2.429610 GCCTTGTCGATTAGGGTACTGA 59.570 50.000 15.18 0.00 31.95 3.41
600 607 5.239306 TGAGAAAAATGTTCGAGCTTCATGT 59.761 36.000 0.00 0.00 0.00 3.21
715 722 8.760541 CTGGATCCCATGTTCGAAAGAAAAGAT 61.761 40.741 9.90 0.00 41.41 2.40
718 725 4.458989 CTGGATCCCATGTTCGAAAGAAAA 59.541 41.667 9.90 0.00 42.12 2.29
723 730 4.771114 ATACTGGATCCCATGTTCGAAA 57.229 40.909 9.90 0.00 30.82 3.46
724 731 4.450976 CAATACTGGATCCCATGTTCGAA 58.549 43.478 9.90 0.00 30.82 3.71
725 732 3.744214 GCAATACTGGATCCCATGTTCGA 60.744 47.826 9.90 0.00 30.82 3.71
726 733 2.549754 GCAATACTGGATCCCATGTTCG 59.450 50.000 9.90 0.00 30.82 3.95
727 734 3.825328 AGCAATACTGGATCCCATGTTC 58.175 45.455 9.90 0.00 30.82 3.18
735 742 5.474876 CCTCCCAATAAAGCAATACTGGATC 59.525 44.000 0.00 0.00 0.00 3.36
741 748 6.715347 ACAATCCTCCCAATAAAGCAATAC 57.285 37.500 0.00 0.00 0.00 1.89
801 816 7.566760 TGTAGTGGATGCATGTTTTATTAGG 57.433 36.000 2.46 0.00 0.00 2.69
890 1840 1.669265 GGCCCGTTTCTCTATTTTCCG 59.331 52.381 0.00 0.00 0.00 4.30
963 1913 0.803740 AGAGACTTACGTCAGGCGAC 59.196 55.000 0.00 0.00 44.77 5.19
966 1916 2.229302 AGAACAGAGACTTACGTCAGGC 59.771 50.000 1.20 0.00 42.73 4.85
981 1931 1.528129 GAGGGCTGGTGAAAGAACAG 58.472 55.000 0.00 0.00 35.40 3.16
983 1933 0.609406 GGGAGGGCTGGTGAAAGAAC 60.609 60.000 0.00 0.00 0.00 3.01
984 1934 1.767692 GGGAGGGCTGGTGAAAGAA 59.232 57.895 0.00 0.00 0.00 2.52
988 1938 2.852075 AACGGGAGGGCTGGTGAA 60.852 61.111 0.00 0.00 0.00 3.18
989 1939 3.319198 GAACGGGAGGGCTGGTGA 61.319 66.667 0.00 0.00 0.00 4.02
1007 1964 2.666317 GAAAGAGAGGGAGAGAGAGGG 58.334 57.143 0.00 0.00 0.00 4.30
1109 2072 2.421529 GGGTGCTCGGTTATGGAAAGAT 60.422 50.000 0.00 0.00 0.00 2.40
1110 2073 1.065709 GGGTGCTCGGTTATGGAAAGA 60.066 52.381 0.00 0.00 0.00 2.52
1131 2095 4.210331 ACAAATATCTGCATCAGGGTTCC 58.790 43.478 0.00 0.00 31.51 3.62
1167 2132 0.886490 GCTGCTGTGCTGGTAACTGT 60.886 55.000 0.00 0.00 37.92 3.55
1192 2157 5.715753 AGAAATCGAAGTTAGTGGGTACTCT 59.284 40.000 0.00 0.00 38.36 3.24
1217 2182 4.776837 AGGACATGGGTCATAATTTTTGCA 59.223 37.500 0.00 0.00 46.17 4.08
1237 2202 0.252103 GGGGCGGATCCAGTATAGGA 60.252 60.000 13.41 0.00 43.01 2.94
1266 2231 1.864750 CGCTGCGAAGAAATTGCGG 60.865 57.895 18.66 0.00 46.23 5.69
1267 2232 3.654365 CGCTGCGAAGAAATTGCG 58.346 55.556 18.66 0.00 41.79 4.85
1286 2251 4.802051 TTGCATCCTGAGGCCCGC 62.802 66.667 0.00 0.00 37.30 6.13
1395 2360 4.647615 CCGAGGATGGCGGCGTAG 62.648 72.222 9.37 0.00 42.55 3.51
1429 2406 0.951040 GAGGAGTGAACCCGCAAGTG 60.951 60.000 0.00 0.00 0.00 3.16
1430 2407 1.371558 GAGGAGTGAACCCGCAAGT 59.628 57.895 0.00 0.00 0.00 3.16
1494 2472 3.383223 TCCATATGACATGACCTGGACA 58.617 45.455 3.65 0.00 0.00 4.02
1511 2489 3.056678 TGCACGCAAAGAAATTGATCCAT 60.057 39.130 0.00 0.00 41.85 3.41
1553 2531 1.002888 AGAGGAAGCAGTCACACCATG 59.997 52.381 0.00 0.00 0.00 3.66
1561 2539 2.421619 CAGAAACCAGAGGAAGCAGTC 58.578 52.381 0.00 0.00 0.00 3.51
1562 2540 1.544314 GCAGAAACCAGAGGAAGCAGT 60.544 52.381 0.00 0.00 0.00 4.40
1567 2545 1.667830 CGCGCAGAAACCAGAGGAA 60.668 57.895 8.75 0.00 0.00 3.36
1598 2576 2.431942 CGTCGACAAACCCCTCGG 60.432 66.667 17.16 0.00 0.00 4.63
1738 2717 4.682778 AGTAGTTCCTGCAAGTAACACA 57.317 40.909 7.87 0.00 0.00 3.72
1764 2743 9.170734 CGGCTACTGGATGTTATATACTTAGTA 57.829 37.037 0.00 0.00 0.00 1.82
1765 2744 7.362747 GCGGCTACTGGATGTTATATACTTAGT 60.363 40.741 0.00 0.00 0.00 2.24
1766 2745 6.973474 GCGGCTACTGGATGTTATATACTTAG 59.027 42.308 0.00 0.00 0.00 2.18
1767 2746 6.434965 TGCGGCTACTGGATGTTATATACTTA 59.565 38.462 0.00 0.00 0.00 2.24
1770 2749 5.068234 TGCGGCTACTGGATGTTATATAC 57.932 43.478 0.00 0.00 0.00 1.47
1789 2768 0.707822 GCTTTTGCGGTAACATTGCG 59.292 50.000 0.00 0.00 34.86 4.85
1835 2814 2.886523 TGTTCAAGATCTGCAAACCCAG 59.113 45.455 0.00 0.00 0.00 4.45
1839 2818 5.218139 CCTCTTTGTTCAAGATCTGCAAAC 58.782 41.667 0.00 2.12 40.95 2.93
1870 2849 0.682209 CCCTCTCCGAACGGACCTTA 60.682 60.000 12.04 0.00 39.76 2.69
1894 2873 2.280404 ATCCAGGCTGCACATCAGGG 62.280 60.000 9.56 0.00 43.06 4.45
1919 2898 7.976135 AATGCTATACCAATCTCATCTGAAC 57.024 36.000 0.00 0.00 0.00 3.18
1948 2927 1.474143 GGAGAGCGCTAAAGCAGGAAT 60.474 52.381 11.50 0.00 42.21 3.01
1983 2962 4.696877 TGCTGTTTATTCACAGGATCAGTG 59.303 41.667 10.37 10.37 43.94 3.66
2031 3010 7.446625 GCTATCACAATCCCTTTCAATGTAGAT 59.553 37.037 0.00 0.00 0.00 1.98
2121 3100 1.410004 ACAGTGGAAAGACGGACTCA 58.590 50.000 0.00 0.00 0.00 3.41
2247 3235 9.639563 TGTTGCCAGATTTGAATAAAGGATATA 57.360 29.630 0.00 0.00 0.00 0.86
2256 3244 7.440198 TGTTGAATTGTTGCCAGATTTGAATA 58.560 30.769 0.00 0.00 0.00 1.75
2291 3279 3.838317 AGTAGCCCACTAAGAACATGACA 59.162 43.478 0.00 0.00 34.98 3.58
2292 3280 4.473477 AGTAGCCCACTAAGAACATGAC 57.527 45.455 0.00 0.00 34.98 3.06
2442 3430 4.566004 TCACACAGGAATTACACAGCTAC 58.434 43.478 0.00 0.00 0.00 3.58
2446 3434 6.652481 AGATTTCTCACACAGGAATTACACAG 59.348 38.462 0.00 0.00 29.20 3.66
2460 3448 6.072508 GCAAACATCCAACTAGATTTCTCACA 60.073 38.462 0.00 0.00 0.00 3.58
2470 3458 4.756642 TCAGTTCTGCAAACATCCAACTAG 59.243 41.667 12.28 0.00 0.00 2.57
2656 3647 5.700832 TGTGTTTATTCGCTCATTTCAGTCT 59.299 36.000 0.00 0.00 0.00 3.24
2717 3708 9.692749 TCCGTTCACAATATAAGATGTTCTATC 57.307 33.333 0.00 0.00 0.00 2.08
2718 3709 9.698309 CTCCGTTCACAATATAAGATGTTCTAT 57.302 33.333 0.00 0.00 0.00 1.98
2779 3776 7.083858 GTGACAAGATAAAACTAGCAAATGCA 58.916 34.615 8.28 0.00 45.16 3.96
2805 3802 1.003573 GGAGACAGGGGATGGGAGT 59.996 63.158 0.00 0.00 0.00 3.85
2840 3837 2.301870 ACATAAGGAAGTCGGCTGTTGA 59.698 45.455 0.00 0.00 0.00 3.18
2848 3845 5.838531 ACTAGAGGAACATAAGGAAGTCG 57.161 43.478 0.00 0.00 0.00 4.18
2879 3876 3.411446 AGTTTGATTGTTCTCATCGGCA 58.589 40.909 0.00 0.00 0.00 5.69
2990 3987 6.206243 GCTGTGCCATCTCATCATTAACTTAT 59.794 38.462 0.00 0.00 0.00 1.73
3553 4553 4.693042 TCTAGCTAGTACTCCCTCTGTC 57.307 50.000 20.10 0.00 0.00 3.51
3831 4853 0.323725 CTGGTTGATCCAACAGGGGG 60.324 60.000 3.87 0.00 46.59 5.40
3832 4854 0.967380 GCTGGTTGATCCAACAGGGG 60.967 60.000 13.36 0.00 46.59 4.79
3976 5002 9.991388 TTTGTTATGATAAAGGCAAATACGTAC 57.009 29.630 0.00 0.00 0.00 3.67
3978 5004 7.700656 GCTTTGTTATGATAAAGGCAAATACGT 59.299 33.333 8.47 0.00 35.31 3.57
3979 5005 7.915397 AGCTTTGTTATGATAAAGGCAAATACG 59.085 33.333 8.47 0.00 35.31 3.06
3992 5018 8.131100 CGTCAAATATTCCAGCTTTGTTATGAT 58.869 33.333 0.00 0.00 32.89 2.45
4085 5111 9.729023 CTGTGAAATGTGAATAAACACTTTACA 57.271 29.630 0.00 0.00 40.87 2.41
4139 5165 2.146920 TCCATCCTTGCATTGCATGA 57.853 45.000 22.19 17.07 38.76 3.07
4197 5223 6.186957 CAGGGTATCATCTAGCTAGACAGAT 58.813 44.000 29.14 29.14 35.71 2.90
4206 5232 1.337260 CCGCACAGGGTATCATCTAGC 60.337 57.143 0.00 0.00 35.97 3.42
4406 6629 8.924511 TGATCCTTCACTCTTTTTAGAAATGT 57.075 30.769 0.00 0.00 0.00 2.71
4441 6664 4.903049 ACGGTATATGTGTTGGGAGGATAA 59.097 41.667 0.00 0.00 0.00 1.75
4445 6668 2.833794 CACGGTATATGTGTTGGGAGG 58.166 52.381 0.00 0.00 32.68 4.30
4499 6729 4.664150 TCATGCATGTAAGTCATCCGTA 57.336 40.909 25.43 0.00 34.09 4.02
4502 6732 3.002656 CGGTTCATGCATGTAAGTCATCC 59.997 47.826 25.43 12.52 34.09 3.51
4503 6733 3.871006 TCGGTTCATGCATGTAAGTCATC 59.129 43.478 25.43 5.12 34.09 2.92
4523 6761 1.099295 ACTGCCATGCCACATCATCG 61.099 55.000 0.00 0.00 0.00 3.84
4702 6944 3.555168 GGAGCATACCTGTATGGCTGTAC 60.555 52.174 16.71 2.00 42.32 2.90
4740 6982 5.401531 TTGTGTTCTCCTAGACATGGTAC 57.598 43.478 0.00 0.00 0.00 3.34
5026 7272 4.307032 ACTAGCTTGATTCACCACCATT 57.693 40.909 1.04 0.00 0.00 3.16
5030 7276 8.718102 TTAGATTTACTAGCTTGATTCACCAC 57.282 34.615 1.04 0.00 32.30 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.