Multiple sequence alignment - TraesCS4A01G215000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G215000 chr4A 100.000 6652 0 0 1 6652 513287348 513293999 0.000000e+00 12285.0
1 TraesCS4A01G215000 chr4A 88.198 1559 118 42 3388 4909 644494492 644492963 0.000000e+00 1799.0
2 TraesCS4A01G215000 chr4A 87.586 145 17 1 6428 6572 680450310 680450167 4.130000e-37 167.0
3 TraesCS4A01G215000 chr4B 92.092 3288 161 38 3192 6418 106857713 106854464 0.000000e+00 4540.0
4 TraesCS4A01G215000 chr4B 91.955 1790 99 24 1 1771 106860926 106859163 0.000000e+00 2466.0
5 TraesCS4A01G215000 chr4B 90.355 705 51 7 2351 3051 106858461 106857770 0.000000e+00 909.0
6 TraesCS4A01G215000 chr4B 89.401 434 28 7 1927 2352 106859008 106858585 1.270000e-146 531.0
7 TraesCS4A01G215000 chr4B 83.750 240 29 9 3051 3282 637342267 637342504 1.120000e-52 219.0
8 TraesCS4A01G215000 chr4D 92.096 3277 157 45 3192 6418 74372512 74369288 0.000000e+00 4523.0
9 TraesCS4A01G215000 chr4D 94.819 1795 60 15 1 1771 74375710 74373925 0.000000e+00 2769.0
10 TraesCS4A01G215000 chr4D 89.418 567 48 6 2491 3051 74373129 74372569 0.000000e+00 704.0
11 TraesCS4A01G215000 chr4D 85.819 684 45 23 1811 2493 74373922 74373290 0.000000e+00 678.0
12 TraesCS4A01G215000 chr7A 92.308 702 41 5 3388 4089 685860779 685860091 0.000000e+00 985.0
13 TraesCS4A01G215000 chr7A 91.000 200 16 2 4890 5088 685854715 685854517 1.100000e-67 268.0
14 TraesCS4A01G215000 chr7A 87.081 209 9 13 4132 4325 685854918 685854713 3.120000e-53 220.0
15 TraesCS4A01G215000 chr7A 80.201 298 31 7 2992 3264 707990872 707990578 1.460000e-46 198.0
16 TraesCS4A01G215000 chr7A 82.738 168 24 5 6420 6584 695181613 695181448 1.930000e-30 145.0
17 TraesCS4A01G215000 chr7A 88.764 89 6 3 1041 1127 708668687 708668601 9.120000e-19 106.0
18 TraesCS4A01G215000 chr7D 83.521 443 51 12 4307 4736 188348290 188348723 1.740000e-105 394.0
19 TraesCS4A01G215000 chr7D 86.066 122 11 5 1041 1159 615907052 615906934 7.000000e-25 126.0
20 TraesCS4A01G215000 chr1B 89.933 298 25 4 3241 3537 119574441 119574148 4.870000e-101 379.0
21 TraesCS4A01G215000 chr1B 82.917 240 31 9 3051 3282 12391761 12391998 2.430000e-49 207.0
22 TraesCS4A01G215000 chr1B 78.859 298 36 10 2992 3264 567188904 567189199 6.860000e-40 176.0
23 TraesCS4A01G215000 chr1B 89.706 136 14 0 6416 6551 15710898 15711033 2.470000e-39 174.0
24 TraesCS4A01G215000 chr1B 85.246 61 4 3 6587 6643 287845399 287845340 2.590000e-04 58.4
25 TraesCS4A01G215000 chr6D 87.261 314 35 4 3113 3424 433116354 433116664 2.950000e-93 353.0
26 TraesCS4A01G215000 chr7B 84.583 240 27 8 3051 3282 681744120 681743883 5.190000e-56 230.0
27 TraesCS4A01G215000 chr7B 85.000 120 16 2 1041 1159 708955029 708954911 3.260000e-23 121.0
28 TraesCS4A01G215000 chr5D 87.766 188 21 2 3101 3287 503799992 503800178 1.120000e-52 219.0
29 TraesCS4A01G215000 chr2D 88.043 184 19 3 3101 3282 620318324 620318506 1.450000e-51 215.0
30 TraesCS4A01G215000 chr3B 80.128 312 39 16 2992 3282 299743738 299744047 1.880000e-50 211.0
31 TraesCS4A01G215000 chr5B 79.866 298 33 17 2992 3264 38453851 38454146 6.810000e-45 193.0
32 TraesCS4A01G215000 chr5B 80.159 252 35 13 6415 6652 700909614 700909864 2.470000e-39 174.0
33 TraesCS4A01G215000 chr6B 82.805 221 29 4 3051 3264 46406565 46406783 8.810000e-44 189.0
34 TraesCS4A01G215000 chr6B 78.930 299 34 15 2992 3264 30415059 30415354 6.860000e-40 176.0
35 TraesCS4A01G215000 chr6B 93.333 60 4 0 2992 3051 46397860 46397919 9.190000e-14 89.8
36 TraesCS4A01G215000 chr6B 89.062 64 6 1 6581 6643 543800248 543800311 1.990000e-10 78.7
37 TraesCS4A01G215000 chr3D 86.747 166 21 1 6420 6584 527858995 527858830 4.100000e-42 183.0
38 TraesCS4A01G215000 chr3D 86.667 165 18 4 6420 6581 528071145 528070982 5.300000e-41 180.0
39 TraesCS4A01G215000 chr3D 85.345 116 17 0 5269 5384 516879587 516879472 3.260000e-23 121.0
40 TraesCS4A01G215000 chr3D 76.048 167 19 11 6507 6652 563842711 563842877 4.310000e-07 67.6
41 TraesCS4A01G215000 chr2B 84.524 168 21 5 6420 6584 25220808 25220973 1.920000e-35 161.0
42 TraesCS4A01G215000 chr2B 88.889 72 7 1 6581 6652 449676850 449676780 3.300000e-13 87.9
43 TraesCS4A01G215000 chr1D 85.714 154 20 2 6417 6569 116906699 116906851 1.920000e-35 161.0
44 TraesCS4A01G215000 chr3A 85.811 148 21 0 6412 6559 653328863 653329010 2.480000e-34 158.0
45 TraesCS4A01G215000 chr3A 74.897 243 43 9 6427 6652 698520420 698520661 1.970000e-15 95.3
46 TraesCS4A01G215000 chr5A 92.063 63 5 0 6581 6643 471296682 471296744 9.190000e-14 89.8
47 TraesCS4A01G215000 chr6A 89.474 57 5 1 6581 6636 560742876 560742932 3.330000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G215000 chr4A 513287348 513293999 6651 False 12285.0 12285 100.00000 1 6652 1 chr4A.!!$F1 6651
1 TraesCS4A01G215000 chr4A 644492963 644494492 1529 True 1799.0 1799 88.19800 3388 4909 1 chr4A.!!$R1 1521
2 TraesCS4A01G215000 chr4B 106854464 106860926 6462 True 2111.5 4540 90.95075 1 6418 4 chr4B.!!$R1 6417
3 TraesCS4A01G215000 chr4D 74369288 74375710 6422 True 2168.5 4523 90.53800 1 6418 4 chr4D.!!$R1 6417
4 TraesCS4A01G215000 chr7A 685860091 685860779 688 True 985.0 985 92.30800 3388 4089 1 chr7A.!!$R1 701

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
131 132 0.616111 AGGTCGAGCCTCTTCCATGT 60.616 55.000 11.73 0.0 46.96 3.21 F
1456 1475 1.139853 GATTCCTCGGAGCAATGGAGT 59.860 52.381 0.00 0.0 0.00 3.85 F
1966 2073 0.304705 CATTATCGGTGGCTCGTTGC 59.695 55.000 1.40 0.0 41.94 4.17 F
1979 2086 0.599991 TCGTTGCGAGTGAATGCTGT 60.600 50.000 0.00 0.0 0.00 4.40 F
2835 3245 1.134280 CATTTCCTCAGGGACGCAGAT 60.134 52.381 0.00 0.0 42.05 2.90 F
3144 3573 0.397941 TGACAGAGTTGGCTTCAGGG 59.602 55.000 0.00 0.0 31.73 4.45 F
3145 3574 0.398318 GACAGAGTTGGCTTCAGGGT 59.602 55.000 0.00 0.0 0.00 4.34 F
3146 3575 0.846693 ACAGAGTTGGCTTCAGGGTT 59.153 50.000 0.00 0.0 0.00 4.11 F
4276 4741 0.863119 GCATTTTCTCCGCACGATGC 60.863 55.000 0.00 0.0 40.69 3.91 F
5296 5800 1.181786 GGGATCGGCAAAATCCAACA 58.818 50.000 11.86 0.0 43.85 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1804 1834 0.249155 CATGGAACCAATGCCATCGC 60.249 55.000 0.00 0.00 42.81 4.58 R
2775 3185 0.106708 GTGACTGTGAGAGCCACCAA 59.893 55.000 0.00 0.00 45.09 3.67 R
3125 3554 0.397941 CCCTGAAGCCAACTCTGTCA 59.602 55.000 0.00 0.00 0.00 3.58 R
3126 3555 0.398318 ACCCTGAAGCCAACTCTGTC 59.602 55.000 0.00 0.00 0.00 3.51 R
4504 4985 0.700564 AGCCCAGTTCCATGTCATGT 59.299 50.000 11.84 0.00 0.00 3.21 R
4906 5398 0.460811 GGTAAACCTCTAACGGGCCG 60.461 60.000 27.06 27.06 0.00 6.13 R
5011 5503 1.135199 GTCATGTGGCTTGCATTCAGG 60.135 52.381 0.00 0.00 0.00 3.86 R
5083 5579 3.818773 TGCAACTAGAACTTAAAGCACCC 59.181 43.478 0.00 0.00 0.00 4.61 R
5452 5956 0.249911 CGGCCCAGTACCTATTCAGC 60.250 60.000 0.00 0.00 0.00 4.26 R
6195 6715 1.448540 CGCAGTGACCCATCCTCAC 60.449 63.158 0.00 0.00 38.70 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 7.852263 ACACATGCTTACTCTTATTACCTTCT 58.148 34.615 0.00 0.00 0.00 2.85
115 116 4.383880 GGGTCGAGCTTTTTCCTAATAGGT 60.384 45.833 15.18 0.00 36.53 3.08
123 124 4.667519 TTTTCCTAATAGGTCGAGCCTC 57.332 45.455 11.73 0.00 46.96 4.70
128 129 2.160721 AATAGGTCGAGCCTCTTCCA 57.839 50.000 11.73 0.00 46.96 3.53
131 132 0.616111 AGGTCGAGCCTCTTCCATGT 60.616 55.000 11.73 0.00 46.96 3.21
147 148 8.421249 TCTTCCATGTCATTCCAATAAAAAGT 57.579 30.769 0.00 0.00 0.00 2.66
231 233 4.675063 AGAAAAATCCACCTACCACCAT 57.325 40.909 0.00 0.00 0.00 3.55
249 251 4.712337 CACCATAGACTAAGTCCCTTCACT 59.288 45.833 0.00 0.00 32.18 3.41
274 276 7.663827 TGATCCAAGCCAAATTTCATGATATC 58.336 34.615 0.00 0.00 0.00 1.63
286 288 9.559958 AAATTTCATGATATCGAAAGTGTTGTC 57.440 29.630 0.00 0.00 34.78 3.18
359 362 7.492020 TGCCATGAATCAGTATTAAAAATGTGC 59.508 33.333 0.00 0.00 0.00 4.57
470 473 8.304596 TGGAGCACTATATGTATAGCAACTAAC 58.695 37.037 6.91 1.81 39.36 2.34
556 562 2.226912 CCCGATGTTTTAACCGCTTTCA 59.773 45.455 0.00 0.00 0.00 2.69
677 685 4.391830 CCTATGAACGTTTGCGCCATATAT 59.608 41.667 4.18 0.00 42.83 0.86
694 702 8.131100 CGCCATATATTTCTCAACACTCAAAAT 58.869 33.333 0.00 0.00 0.00 1.82
726 734 5.831997 ACAATCTTAGCACAAAAACTCCAC 58.168 37.500 0.00 0.00 0.00 4.02
728 736 4.164843 TCTTAGCACAAAAACTCCACCT 57.835 40.909 0.00 0.00 0.00 4.00
749 761 7.775093 CCACCTATAATGACAAGAGGAATCAAA 59.225 37.037 0.00 0.00 0.00 2.69
750 762 8.834465 CACCTATAATGACAAGAGGAATCAAAG 58.166 37.037 0.00 0.00 0.00 2.77
751 763 8.552296 ACCTATAATGACAAGAGGAATCAAAGT 58.448 33.333 0.00 0.00 0.00 2.66
756 768 5.308825 TGACAAGAGGAATCAAAGTTCTCC 58.691 41.667 0.00 0.00 0.00 3.71
999 1013 4.908877 GTAGGCGCTCGCGAGGAC 62.909 72.222 35.10 26.66 43.06 3.85
1283 1297 2.435938 GCGGCCGATTTGGAGTGA 60.436 61.111 33.48 0.00 42.00 3.41
1456 1475 1.139853 GATTCCTCGGAGCAATGGAGT 59.860 52.381 0.00 0.00 0.00 3.85
1477 1496 5.156355 AGTTTGCTTATCATTGCAACTTCG 58.844 37.500 0.00 0.00 46.91 3.79
1524 1544 2.230266 GTCAGAACAGAGGAGTGGAGTC 59.770 54.545 0.00 0.00 0.00 3.36
1580 1610 3.937062 CGGTAGATTTGGCCGCGC 61.937 66.667 0.00 0.00 38.99 6.86
1664 1694 4.583871 TGGCTTGATTCTCTTCTCTTTCC 58.416 43.478 0.00 0.00 0.00 3.13
1748 1778 2.292292 GCTGTTTTGGTCCGAAAGCTTA 59.708 45.455 4.36 0.00 0.00 3.09
1766 1796 4.946157 AGCTTACATGAAAATCCAGTCCAG 59.054 41.667 0.00 0.00 0.00 3.86
1777 1807 3.703001 TCCAGTCCAGGATCAAGTTTC 57.297 47.619 0.00 0.00 31.23 2.78
1778 1808 3.251484 TCCAGTCCAGGATCAAGTTTCT 58.749 45.455 0.00 0.00 31.23 2.52
1779 1809 3.652869 TCCAGTCCAGGATCAAGTTTCTT 59.347 43.478 0.00 0.00 31.23 2.52
1780 1810 4.104738 TCCAGTCCAGGATCAAGTTTCTTT 59.895 41.667 0.00 0.00 31.23 2.52
1781 1811 4.829492 CCAGTCCAGGATCAAGTTTCTTTT 59.171 41.667 0.00 0.00 0.00 2.27
1782 1812 5.048434 CCAGTCCAGGATCAAGTTTCTTTTC 60.048 44.000 0.00 0.00 0.00 2.29
1783 1813 5.767168 CAGTCCAGGATCAAGTTTCTTTTCT 59.233 40.000 0.00 0.00 0.00 2.52
1784 1814 6.264067 CAGTCCAGGATCAAGTTTCTTTTCTT 59.736 38.462 0.00 0.00 0.00 2.52
1785 1815 6.836007 AGTCCAGGATCAAGTTTCTTTTCTTT 59.164 34.615 0.00 0.00 0.00 2.52
1786 1816 7.343057 AGTCCAGGATCAAGTTTCTTTTCTTTT 59.657 33.333 0.00 0.00 0.00 2.27
1787 1817 7.649705 GTCCAGGATCAAGTTTCTTTTCTTTTC 59.350 37.037 0.00 0.00 0.00 2.29
1788 1818 7.561356 TCCAGGATCAAGTTTCTTTTCTTTTCT 59.439 33.333 0.00 0.00 0.00 2.52
1789 1819 8.200120 CCAGGATCAAGTTTCTTTTCTTTTCTT 58.800 33.333 0.00 0.00 0.00 2.52
1790 1820 9.591792 CAGGATCAAGTTTCTTTTCTTTTCTTT 57.408 29.630 0.00 0.00 0.00 2.52
1805 1835 9.885934 TTTCTTTTCTTTTGTTTTACCTTTTGC 57.114 25.926 0.00 0.00 0.00 3.68
1806 1836 7.734554 TCTTTTCTTTTGTTTTACCTTTTGCG 58.265 30.769 0.00 0.00 0.00 4.85
1807 1837 7.599245 TCTTTTCTTTTGTTTTACCTTTTGCGA 59.401 29.630 0.00 0.00 0.00 5.10
1808 1838 7.835634 TTTCTTTTGTTTTACCTTTTGCGAT 57.164 28.000 0.00 0.00 0.00 4.58
1809 1839 6.820470 TCTTTTGTTTTACCTTTTGCGATG 57.180 33.333 0.00 0.00 0.00 3.84
1827 1857 1.548081 TGGCATTGGTTCCATGTCTG 58.452 50.000 0.00 0.00 0.00 3.51
1873 1903 0.827925 AGTGAGTCTGCGGAAGTGGA 60.828 55.000 0.00 0.00 0.00 4.02
1879 1909 2.554032 AGTCTGCGGAAGTGGATTTTTG 59.446 45.455 0.00 0.00 0.00 2.44
1884 1914 1.549037 CGGAAGTGGATTTTTGGGGGA 60.549 52.381 0.00 0.00 0.00 4.81
1885 1915 2.179427 GGAAGTGGATTTTTGGGGGAG 58.821 52.381 0.00 0.00 0.00 4.30
1886 1916 2.179427 GAAGTGGATTTTTGGGGGAGG 58.821 52.381 0.00 0.00 0.00 4.30
1887 1917 0.413434 AGTGGATTTTTGGGGGAGGG 59.587 55.000 0.00 0.00 0.00 4.30
1888 1918 0.411848 GTGGATTTTTGGGGGAGGGA 59.588 55.000 0.00 0.00 0.00 4.20
1889 1919 0.709992 TGGATTTTTGGGGGAGGGAG 59.290 55.000 0.00 0.00 0.00 4.30
1893 1923 2.092904 TTTTTGGGGGAGGGAGGCTG 62.093 60.000 0.00 0.00 0.00 4.85
1921 1951 2.125673 CCGCGGTCGTCTTCCATT 60.126 61.111 19.50 0.00 0.00 3.16
1938 2045 8.786898 GTCTTCCATTGCTAAATATGCTTATGA 58.213 33.333 0.00 0.00 0.00 2.15
1966 2073 0.304705 CATTATCGGTGGCTCGTTGC 59.695 55.000 1.40 0.00 41.94 4.17
1977 2084 4.673403 TCGTTGCGAGTGAATGCT 57.327 50.000 0.00 0.00 0.00 3.79
1978 2085 2.153039 TCGTTGCGAGTGAATGCTG 58.847 52.632 0.00 0.00 0.00 4.41
1979 2086 0.599991 TCGTTGCGAGTGAATGCTGT 60.600 50.000 0.00 0.00 0.00 4.40
1987 2094 4.455533 TGCGAGTGAATGCTGTTTTAGATT 59.544 37.500 0.00 0.00 0.00 2.40
1996 2103 9.761504 TGAATGCTGTTTTAGATTGAAATTTCA 57.238 25.926 16.91 16.91 34.92 2.69
2009 2123 9.288576 AGATTGAAATTTCAGTATGTCTTGTCA 57.711 29.630 19.64 2.26 38.61 3.58
2017 2131 3.990469 CAGTATGTCTTGTCACGAGCTTT 59.010 43.478 0.00 0.00 0.00 3.51
2081 2195 7.441760 TGGATTTCTGTTTTGTTGGATTGATTG 59.558 33.333 0.00 0.00 0.00 2.67
2084 2198 8.961294 TTTCTGTTTTGTTGGATTGATTGATT 57.039 26.923 0.00 0.00 0.00 2.57
2113 2227 5.578727 TCAAATTTGGTGTTGTTACTTGCAC 59.421 36.000 17.90 0.00 0.00 4.57
2142 2256 6.372103 GCTTCCTCAATCATGAATAGATCTGG 59.628 42.308 5.18 0.00 34.49 3.86
2182 2296 3.810373 CACGATTGAAGTGGTTTACTGC 58.190 45.455 0.00 0.00 40.26 4.40
2219 2334 2.821969 AGACAATGACTCAAACATGCCC 59.178 45.455 0.00 0.00 0.00 5.36
2223 2338 4.240096 CAATGACTCAAACATGCCCTTTC 58.760 43.478 0.00 0.00 0.00 2.62
2238 2353 4.918810 CCCTTTCCGAAAATGATAAGGG 57.081 45.455 0.00 0.00 44.07 3.95
2279 2394 4.332819 GCAGCCTGTGTTTTATATCGTCTT 59.667 41.667 0.00 0.00 0.00 3.01
2280 2395 5.727791 GCAGCCTGTGTTTTATATCGTCTTG 60.728 44.000 0.00 0.00 0.00 3.02
2281 2396 5.351465 CAGCCTGTGTTTTATATCGTCTTGT 59.649 40.000 0.00 0.00 0.00 3.16
2282 2397 5.938125 AGCCTGTGTTTTATATCGTCTTGTT 59.062 36.000 0.00 0.00 0.00 2.83
2283 2398 6.021596 GCCTGTGTTTTATATCGTCTTGTTG 58.978 40.000 0.00 0.00 0.00 3.33
2389 2630 8.665685 ACTTGAATAGTTTTGTTATTCCTAGCG 58.334 33.333 3.37 0.00 36.93 4.26
2415 2656 5.343307 AAGTTTGCTGGTGATTTCAGTTT 57.657 34.783 0.00 0.00 34.89 2.66
2417 2658 6.076981 AGTTTGCTGGTGATTTCAGTTTAG 57.923 37.500 0.00 0.00 34.89 1.85
2419 2660 6.770785 AGTTTGCTGGTGATTTCAGTTTAGTA 59.229 34.615 0.00 0.00 34.89 1.82
2439 2680 5.248640 AGTAACCATGAAGTCTGACCAATG 58.751 41.667 3.76 6.14 0.00 2.82
2440 2681 2.440409 ACCATGAAGTCTGACCAATGC 58.560 47.619 3.76 0.00 0.00 3.56
2441 2682 2.224843 ACCATGAAGTCTGACCAATGCA 60.225 45.455 3.76 0.00 0.00 3.96
2442 2683 2.163010 CCATGAAGTCTGACCAATGCAC 59.837 50.000 3.76 0.00 0.00 4.57
2443 2684 1.896220 TGAAGTCTGACCAATGCACC 58.104 50.000 3.76 0.00 0.00 5.01
2444 2685 1.142667 TGAAGTCTGACCAATGCACCA 59.857 47.619 3.76 0.00 0.00 4.17
2445 2686 2.224843 TGAAGTCTGACCAATGCACCAT 60.225 45.455 3.76 0.00 0.00 3.55
2446 2687 2.592102 AGTCTGACCAATGCACCATT 57.408 45.000 3.76 0.00 34.04 3.16
2595 2999 3.949586 TGGTGGATAGGCATGATTTCA 57.050 42.857 0.00 0.00 0.00 2.69
2606 3010 3.345714 GCATGATTTCAAGTAAGTCGCG 58.654 45.455 0.00 0.00 0.00 5.87
2638 3042 4.939509 TCTAAACGCTATGCCACTTTTC 57.060 40.909 0.00 0.00 0.00 2.29
2639 3043 4.575885 TCTAAACGCTATGCCACTTTTCT 58.424 39.130 0.00 0.00 0.00 2.52
2684 3090 6.687081 TTTGGTTTATCACATATTCGGGAC 57.313 37.500 0.00 0.00 0.00 4.46
2690 3096 1.134521 TCACATATTCGGGACCAGTGC 60.135 52.381 0.00 0.00 0.00 4.40
2735 3141 2.449464 TGCCTGATCATTTTCCCACTG 58.551 47.619 0.00 0.00 0.00 3.66
2754 3164 8.198778 TCCCACTGTTATTTTTCCTTGTTAAAC 58.801 33.333 0.00 0.00 0.00 2.01
2760 3170 3.719173 TTTTCCTTGTTAAACGCCTGG 57.281 42.857 0.00 0.00 0.00 4.45
2775 3185 2.037144 GCCTGGCCATGATGAGATTTT 58.963 47.619 12.80 0.00 0.00 1.82
2835 3245 1.134280 CATTTCCTCAGGGACGCAGAT 60.134 52.381 0.00 0.00 42.05 2.90
2848 3258 2.530177 ACGCAGATACACACGAAGATG 58.470 47.619 0.00 0.00 0.00 2.90
2853 3263 5.458779 CGCAGATACACACGAAGATGATTTA 59.541 40.000 0.00 0.00 0.00 1.40
2917 3328 9.014297 AGGAGAAACTAACAATTTGTAATGAGG 57.986 33.333 1.76 0.00 0.00 3.86
2924 3335 6.594788 AACAATTTGTAATGAGGCAGATGT 57.405 33.333 1.76 0.00 0.00 3.06
2934 3345 1.208052 GAGGCAGATGTTAGTGCAGGA 59.792 52.381 0.00 0.00 41.75 3.86
2939 3350 4.479619 GCAGATGTTAGTGCAGGAAAAAG 58.520 43.478 0.00 0.00 39.62 2.27
2945 3356 5.830912 TGTTAGTGCAGGAAAAAGAACATG 58.169 37.500 0.00 0.00 0.00 3.21
3001 3412 8.821686 ATTTAGACACAATATTGGACCATGAA 57.178 30.769 19.37 6.59 0.00 2.57
3009 3420 2.380064 TTGGACCATGAAAGTGGCTT 57.620 45.000 0.00 0.00 43.27 4.35
3033 3444 6.849502 TGAGAGCAAATGAAATCTTGTCATC 58.150 36.000 0.00 0.00 34.60 2.92
3034 3445 6.431852 TGAGAGCAAATGAAATCTTGTCATCA 59.568 34.615 0.00 0.00 34.60 3.07
3044 3455 9.623000 ATGAAATCTTGTCATCAGAATGTGATA 57.377 29.630 0.00 0.00 44.73 2.15
3076 3505 6.539173 TGTTTGCTGTTCTTAGGGAATAGAA 58.461 36.000 6.36 0.00 43.10 2.10
3137 3566 3.879932 GTGTAACTTGACAGAGTTGGC 57.120 47.619 11.12 6.62 39.99 4.52
3138 3567 3.467803 GTGTAACTTGACAGAGTTGGCT 58.532 45.455 11.12 0.00 39.99 4.75
3139 3568 3.877508 GTGTAACTTGACAGAGTTGGCTT 59.122 43.478 11.12 0.00 39.99 4.35
3140 3569 4.024809 GTGTAACTTGACAGAGTTGGCTTC 60.025 45.833 11.12 0.00 39.99 3.86
3141 3570 3.281727 AACTTGACAGAGTTGGCTTCA 57.718 42.857 3.26 0.00 38.39 3.02
3142 3571 2.843701 ACTTGACAGAGTTGGCTTCAG 58.156 47.619 0.00 0.00 31.73 3.02
3143 3572 2.149578 CTTGACAGAGTTGGCTTCAGG 58.850 52.381 0.00 0.00 31.73 3.86
3144 3573 0.397941 TGACAGAGTTGGCTTCAGGG 59.602 55.000 0.00 0.00 31.73 4.45
3145 3574 0.398318 GACAGAGTTGGCTTCAGGGT 59.602 55.000 0.00 0.00 0.00 4.34
3146 3575 0.846693 ACAGAGTTGGCTTCAGGGTT 59.153 50.000 0.00 0.00 0.00 4.11
3147 3576 1.215423 ACAGAGTTGGCTTCAGGGTTT 59.785 47.619 0.00 0.00 0.00 3.27
3148 3577 2.310538 CAGAGTTGGCTTCAGGGTTTT 58.689 47.619 0.00 0.00 0.00 2.43
3149 3578 3.117663 ACAGAGTTGGCTTCAGGGTTTTA 60.118 43.478 0.00 0.00 0.00 1.52
3150 3579 4.082125 CAGAGTTGGCTTCAGGGTTTTAT 58.918 43.478 0.00 0.00 0.00 1.40
3151 3580 5.222048 ACAGAGTTGGCTTCAGGGTTTTATA 60.222 40.000 0.00 0.00 0.00 0.98
3152 3581 5.710099 CAGAGTTGGCTTCAGGGTTTTATAA 59.290 40.000 0.00 0.00 0.00 0.98
3153 3582 5.946377 AGAGTTGGCTTCAGGGTTTTATAAG 59.054 40.000 0.00 0.00 0.00 1.73
3154 3583 5.641155 AGTTGGCTTCAGGGTTTTATAAGT 58.359 37.500 0.00 0.00 0.00 2.24
3155 3584 6.075315 AGTTGGCTTCAGGGTTTTATAAGTT 58.925 36.000 0.00 0.00 0.00 2.66
3156 3585 6.553476 AGTTGGCTTCAGGGTTTTATAAGTTT 59.447 34.615 0.00 0.00 0.00 2.66
3157 3586 6.987403 TGGCTTCAGGGTTTTATAAGTTTT 57.013 33.333 0.00 0.00 0.00 2.43
3158 3587 6.988522 TGGCTTCAGGGTTTTATAAGTTTTC 58.011 36.000 0.00 0.00 0.00 2.29
3159 3588 6.780522 TGGCTTCAGGGTTTTATAAGTTTTCT 59.219 34.615 0.00 0.00 0.00 2.52
3160 3589 7.945664 TGGCTTCAGGGTTTTATAAGTTTTCTA 59.054 33.333 0.00 0.00 0.00 2.10
3161 3590 8.799367 GGCTTCAGGGTTTTATAAGTTTTCTAA 58.201 33.333 0.00 0.00 0.00 2.10
3162 3591 9.841880 GCTTCAGGGTTTTATAAGTTTTCTAAG 57.158 33.333 0.00 0.00 0.00 2.18
3165 3594 9.856162 TCAGGGTTTTATAAGTTTTCTAAGTGT 57.144 29.630 0.00 0.00 0.00 3.55
3179 3608 9.331106 GTTTTCTAAGTGTCTTTTTATGCTAGC 57.669 33.333 8.10 8.10 0.00 3.42
3180 3609 8.615878 TTTCTAAGTGTCTTTTTATGCTAGCA 57.384 30.769 21.85 21.85 0.00 3.49
3181 3610 8.615878 TTCTAAGTGTCTTTTTATGCTAGCAA 57.384 30.769 23.54 8.51 0.00 3.91
3182 3611 8.615878 TCTAAGTGTCTTTTTATGCTAGCAAA 57.384 30.769 23.54 14.18 0.00 3.68
3183 3612 8.721478 TCTAAGTGTCTTTTTATGCTAGCAAAG 58.279 33.333 23.54 19.77 0.00 2.77
3184 3613 6.884280 AGTGTCTTTTTATGCTAGCAAAGT 57.116 33.333 23.54 8.16 0.00 2.66
3185 3614 7.277174 AGTGTCTTTTTATGCTAGCAAAGTT 57.723 32.000 23.54 7.74 0.00 2.66
3186 3615 7.141363 AGTGTCTTTTTATGCTAGCAAAGTTG 58.859 34.615 23.54 10.68 0.00 3.16
3247 3676 8.925161 TTTGACCAAAAGAAACTTGACTAATG 57.075 30.769 0.00 0.00 0.00 1.90
3270 3699 1.764723 TGCTCACATGGTCTCCTATGG 59.235 52.381 0.00 0.00 0.00 2.74
3385 3814 4.023980 CAGGTACAGTCATAGGAGTTCCA 58.976 47.826 0.28 0.00 38.89 3.53
3395 3824 7.493971 CAGTCATAGGAGTTCCATAGAAAACTG 59.506 40.741 0.28 1.88 35.90 3.16
3486 3916 4.334552 TGCACTTGCTCATTCCATTCTAA 58.665 39.130 2.33 0.00 42.66 2.10
3503 3933 4.415881 TCTAAAGGAGAAACTGCACACA 57.584 40.909 0.00 0.00 0.00 3.72
3557 3987 2.352651 CGGATCGATCACAATTGCACTT 59.647 45.455 25.93 0.00 0.00 3.16
3628 4058 2.161855 TGCAACTGAGCCAGGTATTTG 58.838 47.619 7.06 3.94 35.51 2.32
3638 4068 3.256631 AGCCAGGTATTTGCAACTGAAAG 59.743 43.478 14.53 1.99 42.29 2.62
3643 4073 6.261118 CAGGTATTTGCAACTGAAAGATAGC 58.739 40.000 8.68 7.37 37.43 2.97
3759 4189 1.344763 CTATAGTAGTGGTGGCAGCCC 59.655 57.143 14.97 1.82 0.00 5.19
3904 4354 8.783833 GCCTATAGCATAATTCATCTTGAGAA 57.216 34.615 0.00 0.00 42.97 2.87
4039 4489 8.207545 GTGAACCAATTATTCTATCCTCAGACT 58.792 37.037 3.92 0.00 0.00 3.24
4188 4638 2.091333 AGGGAACTTGAGGGAGCAAAAA 60.091 45.455 0.00 0.00 37.44 1.94
4203 4653 6.019075 GGGAGCAAAAATGTTTTCTGTTACAC 60.019 38.462 0.00 0.00 0.00 2.90
4207 4657 6.670927 GCAAAAATGTTTTCTGTTACACGCAA 60.671 34.615 0.00 0.00 0.00 4.85
4243 4708 6.531923 CATCACATCACCCAAGAGAATATCT 58.468 40.000 0.00 0.00 41.27 1.98
4268 4733 4.558538 CCTATTTCTGGCATTTTCTCCG 57.441 45.455 0.00 0.00 0.00 4.63
4276 4741 0.863119 GCATTTTCTCCGCACGATGC 60.863 55.000 0.00 0.00 40.69 3.91
4328 4793 6.569127 TCACCTTACCTTTTGCCTATCATA 57.431 37.500 0.00 0.00 0.00 2.15
4333 4798 6.656693 CCTTACCTTTTGCCTATCATATGGAG 59.343 42.308 2.13 0.86 0.00 3.86
4342 4807 4.624913 CCTATCATATGGAGGGCCTTCTA 58.375 47.826 14.33 9.47 34.31 2.10
4351 4816 2.499197 GAGGGCCTTCTAGCTAATTGC 58.501 52.381 7.89 0.00 43.29 3.56
4422 4888 9.247126 CTCATTCTGTTGATCTACAGTAGAATG 57.753 37.037 28.57 27.41 46.80 2.67
4430 4910 9.719279 GTTGATCTACAGTAGAATGTGTAGTAC 57.281 37.037 14.46 0.00 44.40 2.73
4474 4955 5.547181 GGTCATTACCTTCTGCAAGTTAC 57.453 43.478 0.00 0.00 43.08 2.50
4489 4970 7.342026 TCTGCAAGTTACTCTCCTCAATATGTA 59.658 37.037 0.00 0.00 33.76 2.29
4527 5010 1.355381 TGACATGGAACTGGGCTTCAT 59.645 47.619 0.00 0.00 0.00 2.57
4568 5052 2.943690 CAACTCTCTAATGCATGCTGCT 59.056 45.455 20.33 5.62 45.31 4.24
4644 5129 6.305399 CACTAACATAAGCAAATCACGTTTGG 59.695 38.462 0.98 0.00 45.84 3.28
4683 5171 5.664294 TTTCATCTGTAAATTGCAGGCAT 57.336 34.783 11.01 0.00 34.89 4.40
4709 5197 5.106673 GGACACCTTTAATACAGCAGTTGTC 60.107 44.000 0.00 0.00 41.29 3.18
4777 5265 6.622896 GCCAGTGTGATAATGTTCAAGGTAAC 60.623 42.308 0.00 0.00 0.00 2.50
4779 5267 7.298122 CAGTGTGATAATGTTCAAGGTAACAC 58.702 38.462 0.00 0.00 41.89 3.32
4859 5348 1.696063 AAACATTGCTGCTGGACTGT 58.304 45.000 0.00 2.51 0.00 3.55
4876 5365 3.326747 ACTGTGGCGTGATTCTACTTTC 58.673 45.455 0.00 0.00 0.00 2.62
4898 5390 8.621532 TTTCATGTCTTGCTCTTATAAGTTGT 57.378 30.769 12.19 0.00 0.00 3.32
4899 5391 7.601073 TCATGTCTTGCTCTTATAAGTTGTG 57.399 36.000 12.19 3.47 0.00 3.33
4906 5398 4.876107 TGCTCTTATAAGTTGTGCCTAAGC 59.124 41.667 12.19 10.40 40.48 3.09
4944 5436 4.116747 ACCTGAAAATAGCTCTCACGAG 57.883 45.455 0.00 0.00 40.35 4.18
4998 5490 5.472137 GTGCCACTGAAATTGTAGTTTAGGA 59.528 40.000 0.00 0.00 0.00 2.94
5083 5579 6.889301 ACTCTGCATATTTATGGATGTTGG 57.111 37.500 0.00 0.00 33.51 3.77
5114 5610 9.391006 CTTTAAGTTCTAGTTGCATACCCATTA 57.609 33.333 0.00 0.00 0.00 1.90
5115 5611 8.726870 TTAAGTTCTAGTTGCATACCCATTAC 57.273 34.615 0.00 0.00 0.00 1.89
5116 5612 5.357257 AGTTCTAGTTGCATACCCATTACG 58.643 41.667 0.00 0.00 0.00 3.18
5117 5613 5.128171 AGTTCTAGTTGCATACCCATTACGA 59.872 40.000 0.00 0.00 0.00 3.43
5118 5614 4.940463 TCTAGTTGCATACCCATTACGAC 58.060 43.478 0.00 0.00 0.00 4.34
5144 5641 7.887996 CAATGTTGCTGTGGTTGTTATTTAT 57.112 32.000 0.00 0.00 0.00 1.40
5145 5642 7.731720 CAATGTTGCTGTGGTTGTTATTTATG 58.268 34.615 0.00 0.00 0.00 1.90
5146 5643 6.398234 TGTTGCTGTGGTTGTTATTTATGT 57.602 33.333 0.00 0.00 0.00 2.29
5147 5644 6.442952 TGTTGCTGTGGTTGTTATTTATGTC 58.557 36.000 0.00 0.00 0.00 3.06
5222 5726 9.405587 GATGCTGTTACTCTCATAGAAAGATAC 57.594 37.037 0.00 0.00 0.00 2.24
5225 5729 9.069082 GCTGTTACTCTCATAGAAAGATACCTA 57.931 37.037 0.00 0.00 0.00 3.08
5296 5800 1.181786 GGGATCGGCAAAATCCAACA 58.818 50.000 11.86 0.00 43.85 3.33
5412 5916 5.880341 AGTTTAGCCATTTTACGCATCTTC 58.120 37.500 0.00 0.00 0.00 2.87
5417 5921 6.639632 AGCCATTTTACGCATCTTCATTAT 57.360 33.333 0.00 0.00 0.00 1.28
5443 5947 5.738909 ACAGAATCTCACAAGGTCTAATGG 58.261 41.667 0.00 0.00 0.00 3.16
5452 5956 5.476599 TCACAAGGTCTAATGGGATTTTGTG 59.523 40.000 7.49 7.49 40.09 3.33
5522 6026 2.522185 AGTCAGACTGCATTTGCCATT 58.478 42.857 0.91 0.00 41.18 3.16
5574 6078 0.107459 GGATGAGGAGACCTTGCCAC 60.107 60.000 0.00 0.00 31.76 5.01
5576 6080 0.617413 ATGAGGAGACCTTGCCACTG 59.383 55.000 0.00 0.00 31.76 3.66
5582 6086 0.394565 AGACCTTGCCACTGTCACTC 59.605 55.000 0.00 0.00 0.00 3.51
5670 6174 2.292389 TGATGGACATTCCTTTGCCCAT 60.292 45.455 0.00 0.00 37.46 4.00
5781 6285 4.970662 TCTTTGCTGTTGGATAGAATGC 57.029 40.909 0.00 0.00 0.00 3.56
5820 6338 8.894768 ACAAGTTGATAGTATTATCCTTGCTC 57.105 34.615 10.54 0.57 38.16 4.26
5821 6339 7.934120 ACAAGTTGATAGTATTATCCTTGCTCC 59.066 37.037 10.54 0.00 38.16 4.70
5822 6340 7.863901 AGTTGATAGTATTATCCTTGCTCCT 57.136 36.000 3.06 0.00 35.76 3.69
5823 6341 8.268878 AGTTGATAGTATTATCCTTGCTCCTT 57.731 34.615 3.06 0.00 35.76 3.36
5824 6342 8.371699 AGTTGATAGTATTATCCTTGCTCCTTC 58.628 37.037 3.06 0.00 35.76 3.46
5825 6343 7.246171 TGATAGTATTATCCTTGCTCCTTCC 57.754 40.000 3.06 0.00 35.76 3.46
5826 6344 7.019388 TGATAGTATTATCCTTGCTCCTTCCT 58.981 38.462 3.06 0.00 35.76 3.36
5827 6345 5.559148 AGTATTATCCTTGCTCCTTCCTG 57.441 43.478 0.00 0.00 0.00 3.86
5828 6346 3.872459 ATTATCCTTGCTCCTTCCTGG 57.128 47.619 0.00 0.00 37.10 4.45
5829 6347 2.568546 TATCCTTGCTCCTTCCTGGA 57.431 50.000 0.00 0.00 43.86 3.86
5830 6348 1.904440 ATCCTTGCTCCTTCCTGGAT 58.096 50.000 0.00 0.00 45.16 3.41
5831 6349 1.673767 TCCTTGCTCCTTCCTGGATT 58.326 50.000 0.00 0.00 45.16 3.01
5880 6398 3.055167 ACGAGGGATGATGTCAAACATGA 60.055 43.478 0.00 0.00 39.27 3.07
5959 6477 4.817517 AGTGTACTTACATACAGTGGCAC 58.182 43.478 10.29 10.29 37.34 5.01
6106 6626 4.088634 TCTCATAAATTGCTGCCCAGTTT 58.911 39.130 0.00 1.69 37.22 2.66
6182 6702 3.429085 GCGAACCTAATTTGCATGTCTG 58.571 45.455 0.00 0.00 45.90 3.51
6219 6739 0.657840 GATGGGTCACTGCGTTATGC 59.342 55.000 0.00 0.00 46.70 3.14
6294 6819 3.911661 AGCTGTGCATGAGAGAAAAAC 57.088 42.857 0.00 0.00 0.00 2.43
6295 6820 2.225019 AGCTGTGCATGAGAGAAAAACG 59.775 45.455 0.00 0.00 0.00 3.60
6307 6832 8.967218 CATGAGAGAAAAACGAAAGCAAATAAA 58.033 29.630 0.00 0.00 0.00 1.40
6363 6888 8.786826 ATGTTTTTACAGCAAGTATACTGCTA 57.213 30.769 21.61 10.64 37.42 3.49
6365 6890 8.879759 TGTTTTTACAGCAAGTATACTGCTATC 58.120 33.333 21.61 10.95 37.42 2.08
6369 6894 6.083098 ACAGCAAGTATACTGCTATCTCAG 57.917 41.667 21.61 14.25 37.42 3.35
6378 6903 9.448438 AGTATACTGCTATCTCAGTGAGATTAG 57.552 37.037 34.51 28.86 45.86 1.73
6379 6904 9.226606 GTATACTGCTATCTCAGTGAGATTAGT 57.773 37.037 34.51 31.61 45.86 2.24
6380 6905 8.704849 ATACTGCTATCTCAGTGAGATTAGTT 57.295 34.615 34.51 21.99 45.86 2.24
6381 6906 7.038154 ACTGCTATCTCAGTGAGATTAGTTC 57.962 40.000 34.51 20.59 45.86 3.01
6382 6907 6.833416 ACTGCTATCTCAGTGAGATTAGTTCT 59.167 38.462 34.51 16.40 45.86 3.01
6383 6908 7.341769 ACTGCTATCTCAGTGAGATTAGTTCTT 59.658 37.037 34.51 15.73 45.86 2.52
6384 6909 8.753497 TGCTATCTCAGTGAGATTAGTTCTTA 57.247 34.615 34.51 16.88 45.86 2.10
6435 6961 9.369672 AGGCTTAATACTCTATAACACTAAGCT 57.630 33.333 9.57 0.00 39.77 3.74
6436 6962 9.984190 GGCTTAATACTCTATAACACTAAGCTT 57.016 33.333 3.48 3.48 39.77 3.74
6452 6978 8.722394 ACACTAAGCTTCATAGTTTTAAAGAGC 58.278 33.333 0.00 0.00 31.33 4.09
6453 6979 8.178313 CACTAAGCTTCATAGTTTTAAAGAGCC 58.822 37.037 0.00 0.00 31.33 4.70
6454 6980 8.103935 ACTAAGCTTCATAGTTTTAAAGAGCCT 58.896 33.333 0.00 0.00 29.38 4.58
6455 6981 9.601217 CTAAGCTTCATAGTTTTAAAGAGCCTA 57.399 33.333 0.00 0.00 0.00 3.93
6456 6982 7.851387 AGCTTCATAGTTTTAAAGAGCCTAC 57.149 36.000 0.00 0.00 0.00 3.18
6457 6983 7.394816 AGCTTCATAGTTTTAAAGAGCCTACA 58.605 34.615 0.00 0.00 0.00 2.74
6458 6984 8.049721 AGCTTCATAGTTTTAAAGAGCCTACAT 58.950 33.333 0.00 0.00 0.00 2.29
6459 6985 8.678199 GCTTCATAGTTTTAAAGAGCCTACATT 58.322 33.333 0.00 0.00 0.00 2.71
6469 6995 9.528489 TTTAAAGAGCCTACATTTAATTGAGGT 57.472 29.630 4.42 0.00 30.75 3.85
6470 6996 7.631717 AAAGAGCCTACATTTAATTGAGGTC 57.368 36.000 4.42 7.35 0.00 3.85
6471 6997 6.567602 AGAGCCTACATTTAATTGAGGTCT 57.432 37.500 4.42 9.06 0.00 3.85
6472 6998 6.963322 AGAGCCTACATTTAATTGAGGTCTT 58.037 36.000 4.42 0.00 0.00 3.01
6473 6999 7.051000 AGAGCCTACATTTAATTGAGGTCTTC 58.949 38.462 4.42 6.66 0.00 2.87
6474 7000 6.721318 AGCCTACATTTAATTGAGGTCTTCA 58.279 36.000 4.42 0.00 0.00 3.02
6489 7015 9.519191 TTGAGGTCTTCAATTAGAATTTGATCA 57.481 29.630 0.00 0.00 40.82 2.92
6490 7016 8.950210 TGAGGTCTTCAATTAGAATTTGATCAC 58.050 33.333 0.00 0.00 35.25 3.06
6491 7017 8.286191 AGGTCTTCAATTAGAATTTGATCACC 57.714 34.615 0.00 0.00 35.25 4.02
6492 7018 7.066284 AGGTCTTCAATTAGAATTTGATCACCG 59.934 37.037 0.00 0.00 35.25 4.94
6493 7019 7.189512 GTCTTCAATTAGAATTTGATCACCGG 58.810 38.462 0.00 0.00 35.25 5.28
6494 7020 7.065803 GTCTTCAATTAGAATTTGATCACCGGA 59.934 37.037 9.46 0.00 35.25 5.14
6495 7021 7.775093 TCTTCAATTAGAATTTGATCACCGGAT 59.225 33.333 9.46 0.00 35.25 4.18
6496 7022 7.880160 TCAATTAGAATTTGATCACCGGATT 57.120 32.000 9.46 0.00 32.67 3.01
6497 7023 8.292444 TCAATTAGAATTTGATCACCGGATTT 57.708 30.769 9.46 0.00 32.67 2.17
6498 7024 8.748412 TCAATTAGAATTTGATCACCGGATTTT 58.252 29.630 9.46 0.00 32.67 1.82
6499 7025 8.810427 CAATTAGAATTTGATCACCGGATTTTG 58.190 33.333 9.46 0.00 32.67 2.44
6500 7026 7.695480 TTAGAATTTGATCACCGGATTTTGA 57.305 32.000 9.46 0.27 32.67 2.69
6501 7027 5.954335 AGAATTTGATCACCGGATTTTGAC 58.046 37.500 9.46 0.00 32.67 3.18
6502 7028 4.718940 ATTTGATCACCGGATTTTGACC 57.281 40.909 9.46 0.00 32.67 4.02
6508 7034 4.294523 CGGATTTTGACCGGCTCA 57.705 55.556 0.00 1.26 45.65 4.26
6509 7035 2.550487 CGGATTTTGACCGGCTCAA 58.450 52.632 13.34 13.34 45.65 3.02
6510 7036 0.168128 CGGATTTTGACCGGCTCAAC 59.832 55.000 16.00 7.70 45.65 3.18
6511 7037 1.243902 GGATTTTGACCGGCTCAACA 58.756 50.000 16.00 11.77 38.70 3.33
6512 7038 1.611491 GGATTTTGACCGGCTCAACAA 59.389 47.619 16.00 13.72 38.70 2.83
6513 7039 2.231235 GGATTTTGACCGGCTCAACAAT 59.769 45.455 16.00 16.48 38.70 2.71
6514 7040 3.306019 GGATTTTGACCGGCTCAACAATT 60.306 43.478 16.00 4.99 38.70 2.32
6515 7041 3.810310 TTTTGACCGGCTCAACAATTT 57.190 38.095 16.00 0.00 38.70 1.82
6516 7042 3.363341 TTTGACCGGCTCAACAATTTC 57.637 42.857 16.00 0.00 38.70 2.17
6517 7043 2.270352 TGACCGGCTCAACAATTTCT 57.730 45.000 0.00 0.00 0.00 2.52
6518 7044 2.151202 TGACCGGCTCAACAATTTCTC 58.849 47.619 0.00 0.00 0.00 2.87
6519 7045 2.151202 GACCGGCTCAACAATTTCTCA 58.849 47.619 0.00 0.00 0.00 3.27
6520 7046 2.552315 GACCGGCTCAACAATTTCTCAA 59.448 45.455 0.00 0.00 0.00 3.02
6521 7047 2.955660 ACCGGCTCAACAATTTCTCAAA 59.044 40.909 0.00 0.00 0.00 2.69
6522 7048 3.004734 ACCGGCTCAACAATTTCTCAAAG 59.995 43.478 0.00 0.00 0.00 2.77
6523 7049 2.982470 CGGCTCAACAATTTCTCAAAGC 59.018 45.455 0.00 0.00 0.00 3.51
6524 7050 3.304928 CGGCTCAACAATTTCTCAAAGCT 60.305 43.478 0.00 0.00 0.00 3.74
6525 7051 4.233005 GGCTCAACAATTTCTCAAAGCTC 58.767 43.478 0.00 0.00 0.00 4.09
6526 7052 4.233005 GCTCAACAATTTCTCAAAGCTCC 58.767 43.478 0.00 0.00 0.00 4.70
6527 7053 4.261741 GCTCAACAATTTCTCAAAGCTCCA 60.262 41.667 0.00 0.00 0.00 3.86
6528 7054 5.566230 GCTCAACAATTTCTCAAAGCTCCAT 60.566 40.000 0.00 0.00 0.00 3.41
6529 7055 6.017400 TCAACAATTTCTCAAAGCTCCATC 57.983 37.500 0.00 0.00 0.00 3.51
6530 7056 5.535783 TCAACAATTTCTCAAAGCTCCATCA 59.464 36.000 0.00 0.00 0.00 3.07
6531 7057 6.209986 TCAACAATTTCTCAAAGCTCCATCAT 59.790 34.615 0.00 0.00 0.00 2.45
6532 7058 6.600882 ACAATTTCTCAAAGCTCCATCATT 57.399 33.333 0.00 0.00 0.00 2.57
6533 7059 6.628185 ACAATTTCTCAAAGCTCCATCATTC 58.372 36.000 0.00 0.00 0.00 2.67
6534 7060 6.209986 ACAATTTCTCAAAGCTCCATCATTCA 59.790 34.615 0.00 0.00 0.00 2.57
6535 7061 6.845758 ATTTCTCAAAGCTCCATCATTCAA 57.154 33.333 0.00 0.00 0.00 2.69
6536 7062 6.845758 TTTCTCAAAGCTCCATCATTCAAT 57.154 33.333 0.00 0.00 0.00 2.57
6537 7063 6.845758 TTCTCAAAGCTCCATCATTCAATT 57.154 33.333 0.00 0.00 0.00 2.32
6538 7064 6.446781 TCTCAAAGCTCCATCATTCAATTC 57.553 37.500 0.00 0.00 0.00 2.17
6539 7065 6.185511 TCTCAAAGCTCCATCATTCAATTCT 58.814 36.000 0.00 0.00 0.00 2.40
6540 7066 6.662234 TCTCAAAGCTCCATCATTCAATTCTT 59.338 34.615 0.00 0.00 0.00 2.52
6541 7067 7.177921 TCTCAAAGCTCCATCATTCAATTCTTT 59.822 33.333 0.00 0.00 0.00 2.52
6542 7068 7.673180 TCAAAGCTCCATCATTCAATTCTTTT 58.327 30.769 0.00 0.00 0.00 2.27
6543 7069 8.805175 TCAAAGCTCCATCATTCAATTCTTTTA 58.195 29.630 0.00 0.00 0.00 1.52
6544 7070 9.595823 CAAAGCTCCATCATTCAATTCTTTTAT 57.404 29.630 0.00 0.00 0.00 1.40
6547 7073 9.638176 AGCTCCATCATTCAATTCTTTTATACT 57.362 29.630 0.00 0.00 0.00 2.12
6575 7101 8.652810 AAATTATGCTCTCAAATTTGTATGGC 57.347 30.769 17.47 16.22 32.93 4.40
6576 7102 7.592885 ATTATGCTCTCAAATTTGTATGGCT 57.407 32.000 17.47 10.02 0.00 4.75
6577 7103 5.927281 ATGCTCTCAAATTTGTATGGCTT 57.073 34.783 17.47 12.24 0.00 4.35
6578 7104 5.314923 TGCTCTCAAATTTGTATGGCTTC 57.685 39.130 17.47 2.18 0.00 3.86
6579 7105 4.766373 TGCTCTCAAATTTGTATGGCTTCA 59.234 37.500 17.47 4.42 0.00 3.02
6580 7106 5.243507 TGCTCTCAAATTTGTATGGCTTCAA 59.756 36.000 17.47 0.00 0.00 2.69
6581 7107 6.158598 GCTCTCAAATTTGTATGGCTTCAAA 58.841 36.000 17.47 0.00 37.82 2.69
6582 7108 6.815142 GCTCTCAAATTTGTATGGCTTCAAAT 59.185 34.615 17.47 8.44 43.26 2.32
6584 7110 8.537049 TCTCAAATTTGTATGGCTTCAAATTG 57.463 30.769 17.47 15.45 46.53 2.32
6585 7111 7.603404 TCTCAAATTTGTATGGCTTCAAATTGG 59.397 33.333 17.47 17.75 46.53 3.16
6586 7112 6.654161 TCAAATTTGTATGGCTTCAAATTGGG 59.346 34.615 17.47 16.29 46.53 4.12
6587 7113 5.760484 ATTTGTATGGCTTCAAATTGGGT 57.240 34.783 0.00 0.00 40.04 4.51
6588 7114 4.799564 TTGTATGGCTTCAAATTGGGTC 57.200 40.909 0.00 0.00 0.00 4.46
6589 7115 3.772387 TGTATGGCTTCAAATTGGGTCA 58.228 40.909 0.00 0.00 0.00 4.02
6590 7116 4.352009 TGTATGGCTTCAAATTGGGTCAT 58.648 39.130 10.43 10.43 0.00 3.06
6591 7117 4.402155 TGTATGGCTTCAAATTGGGTCATC 59.598 41.667 9.33 4.67 0.00 2.92
6592 7118 3.173953 TGGCTTCAAATTGGGTCATCT 57.826 42.857 0.00 0.00 0.00 2.90
6593 7119 4.314522 TGGCTTCAAATTGGGTCATCTA 57.685 40.909 0.00 0.00 0.00 1.98
6594 7120 4.671831 TGGCTTCAAATTGGGTCATCTAA 58.328 39.130 0.00 0.00 0.00 2.10
6595 7121 5.271598 TGGCTTCAAATTGGGTCATCTAAT 58.728 37.500 0.00 0.00 0.00 1.73
6596 7122 5.721000 TGGCTTCAAATTGGGTCATCTAATT 59.279 36.000 0.00 0.00 0.00 1.40
6597 7123 6.213195 TGGCTTCAAATTGGGTCATCTAATTT 59.787 34.615 0.00 0.00 35.14 1.82
6598 7124 7.105588 GGCTTCAAATTGGGTCATCTAATTTT 58.894 34.615 0.00 0.00 33.18 1.82
6599 7125 7.064966 GGCTTCAAATTGGGTCATCTAATTTTG 59.935 37.037 0.00 0.00 33.18 2.44
6600 7126 7.818930 GCTTCAAATTGGGTCATCTAATTTTGA 59.181 33.333 0.00 0.00 33.18 2.69
6601 7127 9.143631 CTTCAAATTGGGTCATCTAATTTTGAC 57.856 33.333 0.00 7.12 41.19 3.18
6638 7164 7.781324 TTTTTAAGCTCTCCCATTCAATTCT 57.219 32.000 0.00 0.00 0.00 2.40
6639 7165 8.877864 TTTTTAAGCTCTCCCATTCAATTCTA 57.122 30.769 0.00 0.00 0.00 2.10
6640 7166 9.479549 TTTTTAAGCTCTCCCATTCAATTCTAT 57.520 29.630 0.00 0.00 0.00 1.98
6641 7167 9.479549 TTTTAAGCTCTCCCATTCAATTCTATT 57.520 29.630 0.00 0.00 0.00 1.73
6643 7169 9.784531 TTAAGCTCTCCCATTCAATTCTATTAG 57.215 33.333 0.00 0.00 0.00 1.73
6644 7170 7.385894 AGCTCTCCCATTCAATTCTATTAGT 57.614 36.000 0.00 0.00 0.00 2.24
6645 7171 7.810260 AGCTCTCCCATTCAATTCTATTAGTT 58.190 34.615 0.00 0.00 0.00 2.24
6646 7172 7.936301 AGCTCTCCCATTCAATTCTATTAGTTC 59.064 37.037 0.00 0.00 0.00 3.01
6647 7173 7.716998 GCTCTCCCATTCAATTCTATTAGTTCA 59.283 37.037 0.00 0.00 0.00 3.18
6648 7174 9.790344 CTCTCCCATTCAATTCTATTAGTTCAT 57.210 33.333 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.959721 TTTTGAGAAGGTAATAAGAGTAAGCAT 57.040 29.630 0.00 0.00 0.00 3.79
12 13 9.959721 ATTTTGAGAAGGTAATAAGAGTAAGCA 57.040 29.630 0.00 0.00 0.00 3.91
115 116 1.489481 ATGACATGGAAGAGGCTCGA 58.511 50.000 9.22 0.00 0.00 4.04
249 251 5.943349 ATCATGAAATTTGGCTTGGATCA 57.057 34.783 0.00 0.00 0.00 2.92
274 276 1.525619 GGTTCCTCGACAACACTTTCG 59.474 52.381 5.16 0.00 36.55 3.46
286 288 9.855021 ATTCATTTTAAATGTTTAGGTTCCTCG 57.145 29.630 16.06 0.00 0.00 4.63
443 446 7.487822 AGTTGCTATACATATAGTGCTCCAT 57.512 36.000 7.57 0.00 38.30 3.41
444 447 6.918067 AGTTGCTATACATATAGTGCTCCA 57.082 37.500 7.57 0.00 38.30 3.86
445 448 7.485277 CGTTAGTTGCTATACATATAGTGCTCC 59.515 40.741 7.57 0.00 38.30 4.70
447 450 8.107399 TCGTTAGTTGCTATACATATAGTGCT 57.893 34.615 7.57 6.21 38.30 4.40
448 451 8.912787 ATCGTTAGTTGCTATACATATAGTGC 57.087 34.615 7.57 0.00 38.30 4.40
457 460 6.202954 AGGCATCAAATCGTTAGTTGCTATAC 59.797 38.462 0.00 0.00 30.81 1.47
470 473 5.242393 AGGATCCAATTAAGGCATCAAATCG 59.758 40.000 15.82 0.00 0.00 3.34
584 591 5.041287 GCAATCGCTTATGTAGTAGTGTGA 58.959 41.667 0.00 0.00 34.30 3.58
669 677 9.807649 AATTTTGAGTGTTGAGAAATATATGGC 57.192 29.630 0.00 0.00 0.00 4.40
677 685 5.718146 TGTGCAATTTTGAGTGTTGAGAAA 58.282 33.333 0.00 0.00 0.00 2.52
694 702 5.003692 TGTGCTAAGATTGTTTTGTGCAA 57.996 34.783 0.00 0.00 0.00 4.08
726 734 8.970859 ACTTTGATTCCTCTTGTCATTATAGG 57.029 34.615 0.00 0.00 0.00 2.57
749 761 6.881602 GTCCTAATCAATTGACTTGGAGAACT 59.118 38.462 18.29 0.00 35.43 3.01
750 762 6.881602 AGTCCTAATCAATTGACTTGGAGAAC 59.118 38.462 18.29 9.28 34.53 3.01
751 763 7.020827 AGTCCTAATCAATTGACTTGGAGAA 57.979 36.000 18.29 0.00 34.53 2.87
756 768 8.043710 AGTTAGGAGTCCTAATCAATTGACTTG 58.956 37.037 29.94 0.11 46.16 3.16
832 846 1.793820 AAGGGGAGGGGAGCTTTGTG 61.794 60.000 0.00 0.00 0.00 3.33
833 847 0.178843 TAAGGGGAGGGGAGCTTTGT 60.179 55.000 0.00 0.00 0.00 2.83
834 848 0.999712 TTAAGGGGAGGGGAGCTTTG 59.000 55.000 0.00 0.00 0.00 2.77
835 849 1.768265 TTTAAGGGGAGGGGAGCTTT 58.232 50.000 0.00 0.00 0.00 3.51
1283 1297 1.367840 GCTCGATTCCGCTACCCAT 59.632 57.895 0.00 0.00 35.37 4.00
1375 1394 2.048312 GAATAAACCGCGCTGCTCCC 62.048 60.000 5.56 0.00 0.00 4.30
1477 1496 3.608008 CGAGAGCAAGAAAAAGTTCCAGC 60.608 47.826 0.00 0.00 35.40 4.85
1524 1544 1.060122 GTCCGAATTTTACCAGCGTCG 59.940 52.381 0.00 0.00 0.00 5.12
1580 1610 1.592223 GACTCAACTGGACTCCCCG 59.408 63.158 0.00 0.00 37.93 5.73
1664 1694 0.657368 GCAGTCTTTTTCACACCGCG 60.657 55.000 0.00 0.00 0.00 6.46
1748 1778 4.018141 TGATCCTGGACTGGATTTTCATGT 60.018 41.667 11.37 0.00 46.00 3.21
1779 1809 9.885934 GCAAAAGGTAAAACAAAAGAAAAGAAA 57.114 25.926 0.00 0.00 0.00 2.52
1780 1810 8.224437 CGCAAAAGGTAAAACAAAAGAAAAGAA 58.776 29.630 0.00 0.00 0.00 2.52
1781 1811 7.599245 TCGCAAAAGGTAAAACAAAAGAAAAGA 59.401 29.630 0.00 0.00 0.00 2.52
1782 1812 7.734554 TCGCAAAAGGTAAAACAAAAGAAAAG 58.265 30.769 0.00 0.00 0.00 2.27
1783 1813 7.653767 TCGCAAAAGGTAAAACAAAAGAAAA 57.346 28.000 0.00 0.00 0.00 2.29
1784 1814 7.201565 CCATCGCAAAAGGTAAAACAAAAGAAA 60.202 33.333 0.00 0.00 0.00 2.52
1785 1815 6.256757 CCATCGCAAAAGGTAAAACAAAAGAA 59.743 34.615 0.00 0.00 0.00 2.52
1786 1816 5.751028 CCATCGCAAAAGGTAAAACAAAAGA 59.249 36.000 0.00 0.00 0.00 2.52
1787 1817 5.558083 GCCATCGCAAAAGGTAAAACAAAAG 60.558 40.000 0.00 0.00 34.03 2.27
1788 1818 4.271291 GCCATCGCAAAAGGTAAAACAAAA 59.729 37.500 0.00 0.00 34.03 2.44
1789 1819 3.804873 GCCATCGCAAAAGGTAAAACAAA 59.195 39.130 0.00 0.00 34.03 2.83
1790 1820 3.181475 TGCCATCGCAAAAGGTAAAACAA 60.181 39.130 0.00 0.00 43.74 2.83
1791 1821 2.362397 TGCCATCGCAAAAGGTAAAACA 59.638 40.909 0.00 0.00 43.74 2.83
1792 1822 3.019933 TGCCATCGCAAAAGGTAAAAC 57.980 42.857 0.00 0.00 43.74 2.43
1804 1834 0.249155 CATGGAACCAATGCCATCGC 60.249 55.000 0.00 0.00 42.81 4.58
1805 1835 1.066002 GACATGGAACCAATGCCATCG 59.934 52.381 0.00 0.00 42.81 3.84
1806 1836 2.100252 CAGACATGGAACCAATGCCATC 59.900 50.000 0.00 0.00 42.81 3.51
1807 1837 2.104967 CAGACATGGAACCAATGCCAT 58.895 47.619 0.00 0.00 45.47 4.40
1808 1838 1.548081 CAGACATGGAACCAATGCCA 58.452 50.000 0.00 0.00 38.78 4.92
1827 1857 4.021981 CCCAATTCCAACAAGAGAAACTCC 60.022 45.833 0.00 0.00 0.00 3.85
1873 1903 1.155664 AGCCTCCCTCCCCCAAAAAT 61.156 55.000 0.00 0.00 0.00 1.82
1908 1938 5.560953 GCATATTTAGCAATGGAAGACGACC 60.561 44.000 0.00 0.00 0.00 4.79
1911 1941 5.679734 AGCATATTTAGCAATGGAAGACG 57.320 39.130 0.00 0.00 0.00 4.18
1921 1951 5.473162 ACGCCATTCATAAGCATATTTAGCA 59.527 36.000 0.00 0.00 0.00 3.49
1966 2073 6.169419 TCAATCTAAAACAGCATTCACTCG 57.831 37.500 0.00 0.00 0.00 4.18
1970 2077 9.761504 TGAAATTTCAATCTAAAACAGCATTCA 57.238 25.926 18.45 0.00 33.55 2.57
1987 2094 6.704050 TCGTGACAAGACATACTGAAATTTCA 59.296 34.615 19.45 19.45 35.57 2.69
1995 2102 3.223423 AGCTCGTGACAAGACATACTG 57.777 47.619 0.00 0.00 0.00 2.74
1996 2103 3.944055 AAGCTCGTGACAAGACATACT 57.056 42.857 0.00 0.00 0.00 2.12
2009 2123 2.622064 AGTTTGACCTGAAAGCTCGT 57.378 45.000 0.00 0.00 0.00 4.18
2017 2131 3.455910 CCCCATCAGATAGTTTGACCTGA 59.544 47.826 0.00 0.00 39.60 3.86
2113 2227 6.522946 TCTATTCATGATTGAGGAAGCTCTG 58.477 40.000 0.00 0.00 32.27 3.35
2142 2256 3.181516 CGTGCAAAAGATCTCAACTAGCC 60.182 47.826 0.00 0.00 0.00 3.93
2219 2334 5.417580 TGGTTCCCTTATCATTTTCGGAAAG 59.582 40.000 3.09 0.00 31.50 2.62
2223 2338 4.270008 ACTGGTTCCCTTATCATTTTCGG 58.730 43.478 0.00 0.00 0.00 4.30
2238 2353 3.620821 GCTGCTCTGAGATTTACTGGTTC 59.379 47.826 9.28 0.00 0.00 3.62
2279 2394 1.675483 GCCACACTGATCAACACAACA 59.325 47.619 0.00 0.00 0.00 3.33
2280 2395 1.949525 AGCCACACTGATCAACACAAC 59.050 47.619 0.00 0.00 0.00 3.32
2281 2396 2.346766 AGCCACACTGATCAACACAA 57.653 45.000 0.00 0.00 0.00 3.33
2282 2397 3.701205 ATAGCCACACTGATCAACACA 57.299 42.857 0.00 0.00 0.00 3.72
2283 2398 5.643777 ACTAAATAGCCACACTGATCAACAC 59.356 40.000 0.00 0.00 0.00 3.32
2386 2627 1.227556 ACCAGCAAACTTCGTCGCT 60.228 52.632 0.00 0.00 34.29 4.93
2389 2630 3.003275 TGAAATCACCAGCAAACTTCGTC 59.997 43.478 0.00 0.00 0.00 4.20
2397 2638 6.016610 GGTTACTAAACTGAAATCACCAGCAA 60.017 38.462 0.00 0.00 35.81 3.91
2415 2656 6.406370 CATTGGTCAGACTTCATGGTTACTA 58.594 40.000 0.00 0.00 0.00 1.82
2417 2658 4.142600 GCATTGGTCAGACTTCATGGTTAC 60.143 45.833 0.00 0.00 0.00 2.50
2419 2660 2.821969 GCATTGGTCAGACTTCATGGTT 59.178 45.455 0.00 0.00 0.00 3.67
2440 2681 3.748048 CGAAGGATATAGGTGCAATGGTG 59.252 47.826 0.00 0.00 0.00 4.17
2441 2682 3.391296 ACGAAGGATATAGGTGCAATGGT 59.609 43.478 0.00 0.00 0.00 3.55
2442 2683 4.008074 ACGAAGGATATAGGTGCAATGG 57.992 45.455 0.00 0.00 0.00 3.16
2443 2684 6.398095 TGATACGAAGGATATAGGTGCAATG 58.602 40.000 0.00 0.00 0.00 2.82
2444 2685 6.605471 TGATACGAAGGATATAGGTGCAAT 57.395 37.500 0.00 0.00 0.00 3.56
2445 2686 6.605471 ATGATACGAAGGATATAGGTGCAA 57.395 37.500 0.00 0.00 0.00 4.08
2446 2687 7.712204 TTATGATACGAAGGATATAGGTGCA 57.288 36.000 0.00 0.00 0.00 4.57
2527 2931 5.014755 ACCCTCCATAACCTGTTTCATGTAA 59.985 40.000 0.00 0.00 0.00 2.41
2528 2932 4.538490 ACCCTCCATAACCTGTTTCATGTA 59.462 41.667 0.00 0.00 0.00 2.29
2595 2999 3.314541 AGAATGGAACGCGACTTACTT 57.685 42.857 15.93 0.00 0.00 2.24
2606 3010 5.965918 GCATAGCGTTTAGAAAGAATGGAAC 59.034 40.000 0.00 0.00 0.00 3.62
2660 3064 6.264518 GGTCCCGAATATGTGATAAACCAAAT 59.735 38.462 0.00 0.00 0.00 2.32
2665 3071 5.236478 CACTGGTCCCGAATATGTGATAAAC 59.764 44.000 0.00 0.00 0.00 2.01
2679 3085 2.742372 CGGAAAGCACTGGTCCCG 60.742 66.667 7.38 7.38 0.00 5.14
2684 3090 0.804989 GATTGGACGGAAAGCACTGG 59.195 55.000 0.00 0.00 0.00 4.00
2690 3096 2.004583 TGCTACGATTGGACGGAAAG 57.995 50.000 0.00 0.00 37.61 2.62
2717 3123 6.780457 AATAACAGTGGGAAAATGATCAGG 57.220 37.500 0.09 0.00 0.00 3.86
2735 3141 6.144886 CCAGGCGTTTAACAAGGAAAAATAAC 59.855 38.462 0.00 0.00 0.00 1.89
2754 3164 0.536687 AATCTCATCATGGCCAGGCG 60.537 55.000 13.87 6.41 0.00 5.52
2760 3170 3.788937 CCACCAAAAATCTCATCATGGC 58.211 45.455 0.00 0.00 0.00 4.40
2775 3185 0.106708 GTGACTGTGAGAGCCACCAA 59.893 55.000 0.00 0.00 45.09 3.67
2835 3245 7.956420 AAACACTAAATCATCTTCGTGTGTA 57.044 32.000 0.00 0.00 35.91 2.90
2848 3258 9.010029 TCAATCCCAACTCTTAAACACTAAATC 57.990 33.333 0.00 0.00 0.00 2.17
2853 3263 8.960591 CAATATCAATCCCAACTCTTAAACACT 58.039 33.333 0.00 0.00 0.00 3.55
2910 3321 4.445453 CTGCACTAACATCTGCCTCATTA 58.555 43.478 0.00 0.00 31.97 1.90
2917 3328 4.216257 TCTTTTTCCTGCACTAACATCTGC 59.784 41.667 0.00 0.00 0.00 4.26
2924 3335 6.463995 AACATGTTCTTTTTCCTGCACTAA 57.536 33.333 4.92 0.00 0.00 2.24
2939 3350 6.705825 AGCCAAACCTTATCAAAAACATGTTC 59.294 34.615 12.39 0.00 0.00 3.18
2945 3356 7.602753 ACATCTAGCCAAACCTTATCAAAAAC 58.397 34.615 0.00 0.00 0.00 2.43
2961 3372 7.378966 TGTGTCTAAATATGCTACATCTAGCC 58.621 38.462 0.00 0.00 44.45 3.93
2979 3390 7.336679 CACTTTCATGGTCCAATATTGTGTCTA 59.663 37.037 14.25 3.12 0.00 2.59
2990 3401 1.962807 CAAGCCACTTTCATGGTCCAA 59.037 47.619 0.00 0.00 42.28 3.53
2992 3403 1.815003 CTCAAGCCACTTTCATGGTCC 59.185 52.381 0.00 0.00 42.28 4.46
2993 3404 2.746362 CTCTCAAGCCACTTTCATGGTC 59.254 50.000 0.00 0.00 42.28 4.02
2994 3405 2.787994 CTCTCAAGCCACTTTCATGGT 58.212 47.619 0.00 0.00 42.28 3.55
2995 3406 1.471684 GCTCTCAAGCCACTTTCATGG 59.528 52.381 0.00 0.00 43.10 3.66
3009 3420 6.431852 TGATGACAAGATTTCATTTGCTCTCA 59.568 34.615 0.00 0.00 33.70 3.27
3023 3434 8.262933 TGAAGTATCACATTCTGATGACAAGAT 58.737 33.333 0.00 0.00 40.12 2.40
3033 3444 6.312487 CAAACAGCTGAAGTATCACATTCTG 58.688 40.000 23.35 0.00 0.00 3.02
3034 3445 5.106396 GCAAACAGCTGAAGTATCACATTCT 60.106 40.000 23.35 0.00 41.15 2.40
3103 3532 9.554395 TGTCAAGTTACACTCAATAAGATTCAA 57.446 29.630 0.00 0.00 0.00 2.69
3104 3533 9.208022 CTGTCAAGTTACACTCAATAAGATTCA 57.792 33.333 0.00 0.00 0.00 2.57
3105 3534 9.424319 TCTGTCAAGTTACACTCAATAAGATTC 57.576 33.333 0.00 0.00 0.00 2.52
3106 3535 9.429359 CTCTGTCAAGTTACACTCAATAAGATT 57.571 33.333 0.00 0.00 0.00 2.40
3107 3536 8.589338 ACTCTGTCAAGTTACACTCAATAAGAT 58.411 33.333 0.00 0.00 0.00 2.40
3108 3537 7.952671 ACTCTGTCAAGTTACACTCAATAAGA 58.047 34.615 0.00 0.00 0.00 2.10
3109 3538 8.491152 CAACTCTGTCAAGTTACACTCAATAAG 58.509 37.037 0.00 0.00 37.38 1.73
3110 3539 7.441157 CCAACTCTGTCAAGTTACACTCAATAA 59.559 37.037 0.00 0.00 37.38 1.40
3111 3540 6.929049 CCAACTCTGTCAAGTTACACTCAATA 59.071 38.462 0.00 0.00 37.38 1.90
3112 3541 5.760253 CCAACTCTGTCAAGTTACACTCAAT 59.240 40.000 0.00 0.00 37.38 2.57
3113 3542 5.116180 CCAACTCTGTCAAGTTACACTCAA 58.884 41.667 0.00 0.00 37.38 3.02
3114 3543 4.693283 CCAACTCTGTCAAGTTACACTCA 58.307 43.478 0.00 0.00 37.38 3.41
3115 3544 3.495001 GCCAACTCTGTCAAGTTACACTC 59.505 47.826 0.00 0.00 37.38 3.51
3116 3545 3.134804 AGCCAACTCTGTCAAGTTACACT 59.865 43.478 0.00 0.00 37.38 3.55
3117 3546 3.467803 AGCCAACTCTGTCAAGTTACAC 58.532 45.455 0.00 0.00 37.38 2.90
3118 3547 3.838244 AGCCAACTCTGTCAAGTTACA 57.162 42.857 0.00 0.00 37.38 2.41
3119 3548 4.127171 TGAAGCCAACTCTGTCAAGTTAC 58.873 43.478 0.00 0.00 37.38 2.50
3120 3549 4.380531 CTGAAGCCAACTCTGTCAAGTTA 58.619 43.478 0.00 0.00 37.38 2.24
3121 3550 3.209410 CTGAAGCCAACTCTGTCAAGTT 58.791 45.455 0.00 0.00 40.08 2.66
3122 3551 2.486191 CCTGAAGCCAACTCTGTCAAGT 60.486 50.000 0.00 0.00 0.00 3.16
3123 3552 2.149578 CCTGAAGCCAACTCTGTCAAG 58.850 52.381 0.00 0.00 0.00 3.02
3124 3553 1.202806 CCCTGAAGCCAACTCTGTCAA 60.203 52.381 0.00 0.00 0.00 3.18
3125 3554 0.397941 CCCTGAAGCCAACTCTGTCA 59.602 55.000 0.00 0.00 0.00 3.58
3126 3555 0.398318 ACCCTGAAGCCAACTCTGTC 59.602 55.000 0.00 0.00 0.00 3.51
3127 3556 0.846693 AACCCTGAAGCCAACTCTGT 59.153 50.000 0.00 0.00 0.00 3.41
3128 3557 1.986882 AAACCCTGAAGCCAACTCTG 58.013 50.000 0.00 0.00 0.00 3.35
3129 3558 2.755952 AAAACCCTGAAGCCAACTCT 57.244 45.000 0.00 0.00 0.00 3.24
3130 3559 5.710567 ACTTATAAAACCCTGAAGCCAACTC 59.289 40.000 0.00 0.00 0.00 3.01
3131 3560 5.641155 ACTTATAAAACCCTGAAGCCAACT 58.359 37.500 0.00 0.00 0.00 3.16
3132 3561 5.977489 ACTTATAAAACCCTGAAGCCAAC 57.023 39.130 0.00 0.00 0.00 3.77
3133 3562 6.987403 AAACTTATAAAACCCTGAAGCCAA 57.013 33.333 0.00 0.00 0.00 4.52
3134 3563 6.780522 AGAAAACTTATAAAACCCTGAAGCCA 59.219 34.615 0.00 0.00 0.00 4.75
3135 3564 7.228314 AGAAAACTTATAAAACCCTGAAGCC 57.772 36.000 0.00 0.00 0.00 4.35
3136 3565 9.841880 CTTAGAAAACTTATAAAACCCTGAAGC 57.158 33.333 0.00 0.00 0.00 3.86
3139 3568 9.856162 ACACTTAGAAAACTTATAAAACCCTGA 57.144 29.630 0.00 0.00 0.00 3.86
3153 3582 9.331106 GCTAGCATAAAAAGACACTTAGAAAAC 57.669 33.333 10.63 0.00 0.00 2.43
3154 3583 9.062524 TGCTAGCATAAAAAGACACTTAGAAAA 57.937 29.630 14.93 0.00 0.00 2.29
3155 3584 8.615878 TGCTAGCATAAAAAGACACTTAGAAA 57.384 30.769 14.93 0.00 0.00 2.52
3156 3585 8.615878 TTGCTAGCATAAAAAGACACTTAGAA 57.384 30.769 20.13 0.00 0.00 2.10
3157 3586 8.615878 TTTGCTAGCATAAAAAGACACTTAGA 57.384 30.769 20.13 0.00 0.00 2.10
3158 3587 8.507249 ACTTTGCTAGCATAAAAAGACACTTAG 58.493 33.333 26.15 7.12 34.47 2.18
3159 3588 8.391075 ACTTTGCTAGCATAAAAAGACACTTA 57.609 30.769 26.15 3.24 34.47 2.24
3160 3589 7.277174 ACTTTGCTAGCATAAAAAGACACTT 57.723 32.000 26.15 7.30 34.47 3.16
3161 3590 6.884280 ACTTTGCTAGCATAAAAAGACACT 57.116 33.333 26.15 7.60 34.47 3.55
3162 3591 7.325599 CAACTTTGCTAGCATAAAAAGACAC 57.674 36.000 26.15 0.00 34.47 3.67
3228 3657 8.411318 AGCAAACATTAGTCAAGTTTCTTTTG 57.589 30.769 0.00 0.00 33.54 2.44
3247 3676 2.191128 AGGAGACCATGTGAGCAAAC 57.809 50.000 0.00 0.00 0.00 2.93
3270 3699 3.559238 ATTTCGCCAACAATCACTGTC 57.441 42.857 0.00 0.00 37.23 3.51
3395 3824 6.020360 GCAGCAAGCTAAAGCACATTATTAAC 60.020 38.462 4.54 0.00 45.16 2.01
3486 3916 3.068590 CCAAATGTGTGCAGTTTCTCCTT 59.931 43.478 0.00 0.00 29.72 3.36
3503 3933 7.833285 AAGAACACAACCAAGTATACCAAAT 57.167 32.000 0.00 0.00 0.00 2.32
3628 4058 3.618594 TGTCATCGCTATCTTTCAGTTGC 59.381 43.478 0.00 0.00 0.00 4.17
3638 4068 5.808042 ATAATGGCATTGTCATCGCTATC 57.192 39.130 22.57 0.00 0.00 2.08
3643 4073 9.897744 ATTAAGTTAATAATGGCATTGTCATCG 57.102 29.630 22.57 0.00 0.00 3.84
3716 4146 5.024555 GTCGCATATGAAAGAAAAGCTGAC 58.975 41.667 6.97 0.00 0.00 3.51
3759 4189 9.408648 AGGGACAACAAAATATATAAGAACCAG 57.591 33.333 0.00 0.00 0.00 4.00
3891 4341 9.878737 ATCCCATAAAGAATTCTCAAGATGAAT 57.121 29.630 8.78 5.15 35.88 2.57
3904 4354 8.699130 GGATTCAGTGAAAATCCCATAAAGAAT 58.301 33.333 10.14 0.00 44.28 2.40
4039 4489 4.630111 CAACAATTAGAGCAAAAGCCCAA 58.370 39.130 0.00 0.00 0.00 4.12
4120 4570 8.517878 GCACAACTCTATGGCATCAATAATAAT 58.482 33.333 1.65 0.00 0.00 1.28
4188 4638 5.163703 TGAGTTTGCGTGTAACAGAAAACAT 60.164 36.000 2.43 0.00 39.61 2.71
4203 4653 1.002576 TGATGCACTGTTGAGTTTGCG 60.003 47.619 0.00 0.00 0.00 4.85
4207 4657 3.251729 GTGATGTGATGCACTGTTGAGTT 59.748 43.478 0.00 0.00 35.11 3.01
4299 4764 1.824852 CAAAAGGTAAGGTGATGCCCC 59.175 52.381 0.00 0.00 38.26 5.80
4328 4793 2.496679 TTAGCTAGAAGGCCCTCCAT 57.503 50.000 0.00 0.00 33.74 3.41
4333 4798 1.230324 CGCAATTAGCTAGAAGGCCC 58.770 55.000 0.00 0.00 42.61 5.80
4382 4848 9.639563 TCAACAGAATGAGAGATAGAGATAACT 57.360 33.333 0.00 0.00 39.69 2.24
4410 4876 9.302345 CAAATGGTACTACACATTCTACTGTAG 57.698 37.037 8.55 8.55 43.75 2.74
4430 4910 5.163311 ACCTTTTCTTTGAAGGACCAAATGG 60.163 40.000 9.69 0.00 45.25 3.16
4489 4970 8.788806 TCCATGTCATGTACGAAAAACTTTATT 58.211 29.630 11.84 0.00 0.00 1.40
4501 4982 2.279741 CCCAGTTCCATGTCATGTACG 58.720 52.381 11.84 6.26 0.00 3.67
4504 4985 0.700564 AGCCCAGTTCCATGTCATGT 59.299 50.000 11.84 0.00 0.00 3.21
4510 4993 1.843368 ACATGAAGCCCAGTTCCATG 58.157 50.000 0.00 0.00 0.00 3.66
4603 5088 5.189928 TGTTAGTGGCTCAACAGAAAGAAA 58.810 37.500 0.00 0.00 31.29 2.52
4644 5129 9.410556 ACAGATGAAATAAAATGTTGTTAGCAC 57.589 29.630 0.00 0.00 0.00 4.40
4683 5171 4.980573 ACTGCTGTATTAAAGGTGTCCAA 58.019 39.130 0.00 0.00 0.00 3.53
4777 5265 2.468777 GCACTGAAAACGATGCAAAGTG 59.531 45.455 0.00 0.00 38.00 3.16
4779 5267 2.730069 TGCACTGAAAACGATGCAAAG 58.270 42.857 0.00 0.00 44.72 2.77
4854 5343 2.656560 AGTAGAATCACGCCACAGTC 57.343 50.000 0.00 0.00 0.00 3.51
4859 5348 3.932710 GACATGAAAGTAGAATCACGCCA 59.067 43.478 0.00 0.00 0.00 5.69
4876 5365 6.253746 GCACAACTTATAAGAGCAAGACATG 58.746 40.000 19.38 0.00 0.00 3.21
4906 5398 0.460811 GGTAAACCTCTAACGGGCCG 60.461 60.000 27.06 27.06 0.00 6.13
4911 5403 6.817140 AGCTATTTTCAGGTAAACCTCTAACG 59.183 38.462 0.00 0.00 46.65 3.18
4913 5405 8.147244 AGAGCTATTTTCAGGTAAACCTCTAA 57.853 34.615 0.00 0.00 46.65 2.10
4998 5490 6.093082 GCTTGCATTCAGGAAAAAGCAATAAT 59.907 34.615 15.34 0.00 36.66 1.28
5005 5497 3.062042 GTGGCTTGCATTCAGGAAAAAG 58.938 45.455 0.00 0.00 0.00 2.27
5006 5498 2.433604 TGTGGCTTGCATTCAGGAAAAA 59.566 40.909 0.00 0.00 0.00 1.94
5011 5503 1.135199 GTCATGTGGCTTGCATTCAGG 60.135 52.381 0.00 0.00 0.00 3.86
5063 5559 4.834496 ACCCCAACATCCATAAATATGCAG 59.166 41.667 0.00 0.00 32.40 4.41
5083 5579 3.818773 TGCAACTAGAACTTAAAGCACCC 59.181 43.478 0.00 0.00 0.00 4.61
5145 5642 7.138692 AGATAAAAAGCACAAGTCATCAGAC 57.861 36.000 0.00 0.00 45.31 3.51
5146 5643 7.445096 TCAAGATAAAAAGCACAAGTCATCAGA 59.555 33.333 0.00 0.00 0.00 3.27
5147 5644 7.587629 TCAAGATAAAAAGCACAAGTCATCAG 58.412 34.615 0.00 0.00 0.00 2.90
5188 5685 7.692460 ATGAGAGTAACAGCATCAATGAAAA 57.308 32.000 0.00 0.00 0.00 2.29
5208 5705 7.763528 GGCATGATGTAGGTATCTTTCTATGAG 59.236 40.741 0.00 0.00 0.00 2.90
5222 5726 5.009410 GGAGAAAATTCTGGCATGATGTAGG 59.991 44.000 0.00 0.00 37.73 3.18
5225 5729 4.607239 AGGAGAAAATTCTGGCATGATGT 58.393 39.130 0.00 0.00 37.73 3.06
5229 5733 3.181489 GCTGAGGAGAAAATTCTGGCATG 60.181 47.826 0.00 0.00 37.73 4.06
5296 5800 3.250762 CACACATTTCCGTGACAATCTGT 59.749 43.478 0.00 0.00 39.34 3.41
5387 5891 4.941263 AGATGCGTAAAATGGCTAAACTCA 59.059 37.500 0.00 0.00 0.00 3.41
5412 5916 9.388506 AGACCTTGTGAGATTCTGTTTATAATG 57.611 33.333 0.00 0.00 0.00 1.90
5417 5921 7.824289 CCATTAGACCTTGTGAGATTCTGTTTA 59.176 37.037 0.00 0.00 0.00 2.01
5432 5936 4.463891 CAGCACAAAATCCCATTAGACCTT 59.536 41.667 0.00 0.00 0.00 3.50
5434 5938 4.016444 TCAGCACAAAATCCCATTAGACC 58.984 43.478 0.00 0.00 0.00 3.85
5443 5947 5.066505 CCAGTACCTATTCAGCACAAAATCC 59.933 44.000 0.00 0.00 0.00 3.01
5452 5956 0.249911 CGGCCCAGTACCTATTCAGC 60.250 60.000 0.00 0.00 0.00 4.26
5522 6026 8.602424 TCTTGATATTTTAGTGGAAGAACCTCA 58.398 33.333 0.00 0.00 39.86 3.86
5561 6065 0.603975 GTGACAGTGGCAAGGTCTCC 60.604 60.000 17.38 7.47 32.84 3.71
5574 6078 1.002868 CAGCCTTGGGGAGTGACAG 60.003 63.158 0.00 0.00 33.58 3.51
5576 6080 1.204146 TATCAGCCTTGGGGAGTGAC 58.796 55.000 0.00 0.00 32.35 3.67
5582 6086 3.496870 GGTAGTGATTATCAGCCTTGGGG 60.497 52.174 0.00 0.00 0.00 4.96
5670 6174 4.286707 TGCTAAGAGGTTCCTAGCACATA 58.713 43.478 9.82 0.00 38.65 2.29
5781 6285 8.889717 ACTATCAACTTGTAATTTCCATAACCG 58.110 33.333 0.00 0.00 0.00 4.44
5820 6338 5.264395 AGGTGAAATTGTAATCCAGGAAGG 58.736 41.667 0.00 0.00 39.47 3.46
5821 6339 6.840780 AAGGTGAAATTGTAATCCAGGAAG 57.159 37.500 0.00 0.00 0.00 3.46
5822 6340 7.610580 AAAAGGTGAAATTGTAATCCAGGAA 57.389 32.000 0.00 0.00 0.00 3.36
5823 6341 8.893563 ATAAAAGGTGAAATTGTAATCCAGGA 57.106 30.769 0.00 0.00 0.00 3.86
5858 6376 3.055167 TCATGTTTGACATCATCCCTCGT 60.055 43.478 0.00 0.00 36.53 4.18
5880 6398 1.747444 AACCATCCCTTGACTGACCT 58.253 50.000 0.00 0.00 0.00 3.85
6106 6626 3.495331 ACACAGATAACAATTGGCACCA 58.505 40.909 10.83 0.00 0.00 4.17
6159 6679 2.163412 GACATGCAAATTAGGTTCGCCA 59.837 45.455 0.00 0.00 40.60 5.69
6180 6700 6.348786 CCCATCCTCACGAAATATTTATGCAG 60.349 42.308 0.00 3.50 0.00 4.41
6182 6702 5.473504 ACCCATCCTCACGAAATATTTATGC 59.526 40.000 0.00 0.00 0.00 3.14
6195 6715 1.448540 CGCAGTGACCCATCCTCAC 60.449 63.158 0.00 0.00 38.70 3.51
6229 6754 6.149474 ACTGAATTACATTTTCAAGACGAGGG 59.851 38.462 0.00 0.00 32.98 4.30
6334 6859 9.329913 CAGTATACTTGCTGTAAAAACATTGAC 57.670 33.333 1.56 0.00 34.45 3.18
6365 6890 8.956426 ACTCTCTTAAGAACTAATCTCACTGAG 58.044 37.037 6.63 7.21 37.42 3.35
6426 6952 8.722394 GCTCTTTAAAACTATGAAGCTTAGTGT 58.278 33.333 0.00 0.00 30.46 3.55
6427 6953 8.178313 GGCTCTTTAAAACTATGAAGCTTAGTG 58.822 37.037 0.00 0.00 30.46 2.74
6428 6954 8.103935 AGGCTCTTTAAAACTATGAAGCTTAGT 58.896 33.333 0.00 0.00 0.00 2.24
6429 6955 8.499403 AGGCTCTTTAAAACTATGAAGCTTAG 57.501 34.615 0.00 0.00 0.00 2.18
6430 6956 9.379791 GTAGGCTCTTTAAAACTATGAAGCTTA 57.620 33.333 0.00 0.00 0.00 3.09
6431 6957 7.883311 TGTAGGCTCTTTAAAACTATGAAGCTT 59.117 33.333 0.00 0.00 0.00 3.74
6432 6958 7.394816 TGTAGGCTCTTTAAAACTATGAAGCT 58.605 34.615 0.00 0.00 0.00 3.74
6433 6959 7.611213 TGTAGGCTCTTTAAAACTATGAAGC 57.389 36.000 0.00 0.00 0.00 3.86
6443 6969 9.528489 ACCTCAATTAAATGTAGGCTCTTTAAA 57.472 29.630 11.29 0.00 30.60 1.52
6444 6970 9.174166 GACCTCAATTAAATGTAGGCTCTTTAA 57.826 33.333 0.00 1.11 0.00 1.52
6445 6971 8.548877 AGACCTCAATTAAATGTAGGCTCTTTA 58.451 33.333 0.00 0.00 0.00 1.85
6446 6972 7.406104 AGACCTCAATTAAATGTAGGCTCTTT 58.594 34.615 0.00 0.00 0.00 2.52
6447 6973 6.963322 AGACCTCAATTAAATGTAGGCTCTT 58.037 36.000 0.00 0.00 0.00 2.85
6448 6974 6.567602 AGACCTCAATTAAATGTAGGCTCT 57.432 37.500 0.00 7.80 0.00 4.09
6449 6975 6.823689 TGAAGACCTCAATTAAATGTAGGCTC 59.176 38.462 0.00 6.37 0.00 4.70
6450 6976 6.721318 TGAAGACCTCAATTAAATGTAGGCT 58.279 36.000 0.00 0.00 0.00 4.58
6451 6977 7.391148 TTGAAGACCTCAATTAAATGTAGGC 57.609 36.000 8.21 0.00 39.20 3.93
6464 6990 8.950210 GTGATCAAATTCTAATTGAAGACCTCA 58.050 33.333 0.00 0.00 39.98 3.86
6465 6991 8.401709 GGTGATCAAATTCTAATTGAAGACCTC 58.598 37.037 0.00 0.00 39.98 3.85
6466 6992 7.066284 CGGTGATCAAATTCTAATTGAAGACCT 59.934 37.037 0.00 0.00 39.98 3.85
6467 6993 7.189512 CGGTGATCAAATTCTAATTGAAGACC 58.810 38.462 0.00 8.76 39.98 3.85
6468 6994 7.065803 TCCGGTGATCAAATTCTAATTGAAGAC 59.934 37.037 0.00 0.00 39.98 3.01
6469 6995 7.109501 TCCGGTGATCAAATTCTAATTGAAGA 58.890 34.615 0.00 0.00 39.98 2.87
6470 6996 7.320443 TCCGGTGATCAAATTCTAATTGAAG 57.680 36.000 0.00 0.00 39.98 3.02
6471 6997 7.880160 ATCCGGTGATCAAATTCTAATTGAA 57.120 32.000 0.00 0.00 39.98 2.69
6472 6998 7.880160 AATCCGGTGATCAAATTCTAATTGA 57.120 32.000 0.00 0.00 40.76 2.57
6473 6999 8.810427 CAAAATCCGGTGATCAAATTCTAATTG 58.190 33.333 0.00 0.00 0.00 2.32
6474 7000 8.748412 TCAAAATCCGGTGATCAAATTCTAATT 58.252 29.630 0.00 0.00 0.00 1.40
6475 7001 8.190784 GTCAAAATCCGGTGATCAAATTCTAAT 58.809 33.333 0.00 0.00 0.00 1.73
6476 7002 7.362574 GGTCAAAATCCGGTGATCAAATTCTAA 60.363 37.037 0.00 0.00 0.00 2.10
6477 7003 6.094881 GGTCAAAATCCGGTGATCAAATTCTA 59.905 38.462 0.00 0.00 0.00 2.10
6478 7004 5.105756 GGTCAAAATCCGGTGATCAAATTCT 60.106 40.000 0.00 0.00 0.00 2.40
6479 7005 5.102313 GGTCAAAATCCGGTGATCAAATTC 58.898 41.667 0.00 0.00 0.00 2.17
6480 7006 4.380444 CGGTCAAAATCCGGTGATCAAATT 60.380 41.667 0.00 0.00 43.68 1.82
6481 7007 3.128589 CGGTCAAAATCCGGTGATCAAAT 59.871 43.478 0.00 0.00 43.68 2.32
6482 7008 2.486203 CGGTCAAAATCCGGTGATCAAA 59.514 45.455 0.00 0.00 43.68 2.69
6483 7009 2.080693 CGGTCAAAATCCGGTGATCAA 58.919 47.619 0.00 0.00 43.68 2.57
6484 7010 1.732941 CGGTCAAAATCCGGTGATCA 58.267 50.000 0.00 0.00 43.68 2.92
6491 7017 2.550487 TTGAGCCGGTCAAAATCCG 58.450 52.632 10.56 0.00 42.49 4.18
6497 7023 2.552315 GAGAAATTGTTGAGCCGGTCAA 59.448 45.455 8.95 8.95 43.26 3.18
6498 7024 2.151202 GAGAAATTGTTGAGCCGGTCA 58.849 47.619 1.90 2.59 0.00 4.02
6499 7025 2.151202 TGAGAAATTGTTGAGCCGGTC 58.849 47.619 1.90 0.00 0.00 4.79
6500 7026 2.270352 TGAGAAATTGTTGAGCCGGT 57.730 45.000 1.90 0.00 0.00 5.28
6501 7027 3.568538 CTTTGAGAAATTGTTGAGCCGG 58.431 45.455 0.00 0.00 0.00 6.13
6502 7028 2.982470 GCTTTGAGAAATTGTTGAGCCG 59.018 45.455 0.00 0.00 0.00 5.52
6503 7029 4.233005 GAGCTTTGAGAAATTGTTGAGCC 58.767 43.478 0.00 0.00 0.00 4.70
6504 7030 4.233005 GGAGCTTTGAGAAATTGTTGAGC 58.767 43.478 0.00 0.00 0.00 4.26
6505 7031 5.443185 TGGAGCTTTGAGAAATTGTTGAG 57.557 39.130 0.00 0.00 0.00 3.02
6506 7032 5.535783 TGATGGAGCTTTGAGAAATTGTTGA 59.464 36.000 0.00 0.00 0.00 3.18
6507 7033 5.775686 TGATGGAGCTTTGAGAAATTGTTG 58.224 37.500 0.00 0.00 0.00 3.33
6508 7034 6.600882 ATGATGGAGCTTTGAGAAATTGTT 57.399 33.333 0.00 0.00 0.00 2.83
6509 7035 6.209986 TGAATGATGGAGCTTTGAGAAATTGT 59.790 34.615 0.00 0.00 0.00 2.71
6510 7036 6.627243 TGAATGATGGAGCTTTGAGAAATTG 58.373 36.000 0.00 0.00 0.00 2.32
6511 7037 6.845758 TGAATGATGGAGCTTTGAGAAATT 57.154 33.333 0.00 0.00 0.00 1.82
6512 7038 6.845758 TTGAATGATGGAGCTTTGAGAAAT 57.154 33.333 0.00 0.00 0.00 2.17
6513 7039 6.845758 ATTGAATGATGGAGCTTTGAGAAA 57.154 33.333 0.00 0.00 0.00 2.52
6514 7040 6.662234 AGAATTGAATGATGGAGCTTTGAGAA 59.338 34.615 0.00 0.00 0.00 2.87
6515 7041 6.185511 AGAATTGAATGATGGAGCTTTGAGA 58.814 36.000 0.00 0.00 0.00 3.27
6516 7042 6.452494 AGAATTGAATGATGGAGCTTTGAG 57.548 37.500 0.00 0.00 0.00 3.02
6517 7043 6.845758 AAGAATTGAATGATGGAGCTTTGA 57.154 33.333 0.00 0.00 0.00 2.69
6518 7044 7.900782 AAAAGAATTGAATGATGGAGCTTTG 57.099 32.000 0.00 0.00 0.00 2.77
6521 7047 9.638176 AGTATAAAAGAATTGAATGATGGAGCT 57.362 29.630 0.00 0.00 0.00 4.09
6549 7075 9.748708 GCCATACAAATTTGAGAGCATAATTTA 57.251 29.630 24.64 2.48 32.04 1.40
6550 7076 8.480501 AGCCATACAAATTTGAGAGCATAATTT 58.519 29.630 24.64 0.17 33.12 1.82
6551 7077 8.015185 AGCCATACAAATTTGAGAGCATAATT 57.985 30.769 24.64 0.68 0.00 1.40
6552 7078 7.592885 AGCCATACAAATTTGAGAGCATAAT 57.407 32.000 24.64 1.42 0.00 1.28
6553 7079 7.122501 TGAAGCCATACAAATTTGAGAGCATAA 59.877 33.333 24.64 5.52 0.00 1.90
6554 7080 6.602803 TGAAGCCATACAAATTTGAGAGCATA 59.397 34.615 24.64 5.84 0.00 3.14
6555 7081 5.419788 TGAAGCCATACAAATTTGAGAGCAT 59.580 36.000 24.64 13.39 0.00 3.79
6556 7082 4.766373 TGAAGCCATACAAATTTGAGAGCA 59.234 37.500 24.64 8.30 0.00 4.26
6557 7083 5.314923 TGAAGCCATACAAATTTGAGAGC 57.685 39.130 24.64 18.76 0.00 4.09
6565 7091 5.248020 TGACCCAATTTGAAGCCATACAAAT 59.752 36.000 0.00 0.00 44.88 2.32
6566 7092 4.590647 TGACCCAATTTGAAGCCATACAAA 59.409 37.500 0.00 0.00 39.67 2.83
6567 7093 4.155709 TGACCCAATTTGAAGCCATACAA 58.844 39.130 0.00 0.00 0.00 2.41
6568 7094 3.772387 TGACCCAATTTGAAGCCATACA 58.228 40.909 0.00 0.00 0.00 2.29
6569 7095 4.646492 AGATGACCCAATTTGAAGCCATAC 59.354 41.667 0.00 0.00 0.00 2.39
6570 7096 4.870636 AGATGACCCAATTTGAAGCCATA 58.129 39.130 0.00 0.00 0.00 2.74
6571 7097 3.716431 AGATGACCCAATTTGAAGCCAT 58.284 40.909 0.00 0.00 0.00 4.40
6572 7098 3.173953 AGATGACCCAATTTGAAGCCA 57.826 42.857 0.00 0.00 0.00 4.75
6573 7099 5.859205 ATTAGATGACCCAATTTGAAGCC 57.141 39.130 0.00 0.00 0.00 4.35
6574 7100 7.818930 TCAAAATTAGATGACCCAATTTGAAGC 59.181 33.333 0.00 0.00 33.38 3.86
6575 7101 9.143631 GTCAAAATTAGATGACCCAATTTGAAG 57.856 33.333 0.00 0.00 40.00 3.02
6614 7140 7.781324 AGAATTGAATGGGAGAGCTTAAAAA 57.219 32.000 0.00 0.00 0.00 1.94
6615 7141 9.479549 AATAGAATTGAATGGGAGAGCTTAAAA 57.520 29.630 0.00 0.00 0.00 1.52
6617 7143 9.784531 CTAATAGAATTGAATGGGAGAGCTTAA 57.215 33.333 0.00 0.00 0.00 1.85
6618 7144 8.938883 ACTAATAGAATTGAATGGGAGAGCTTA 58.061 33.333 0.00 0.00 0.00 3.09
6619 7145 7.810260 ACTAATAGAATTGAATGGGAGAGCTT 58.190 34.615 0.00 0.00 0.00 3.74
6620 7146 7.385894 ACTAATAGAATTGAATGGGAGAGCT 57.614 36.000 0.00 0.00 0.00 4.09
6621 7147 7.716998 TGAACTAATAGAATTGAATGGGAGAGC 59.283 37.037 0.00 0.00 0.00 4.09
6622 7148 9.790344 ATGAACTAATAGAATTGAATGGGAGAG 57.210 33.333 0.00 0.00 0.00 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.