Multiple sequence alignment - TraesCS4A01G214900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G214900 chr4A 100.000 2204 0 0 1 2204 513122106 513119903 0.000000e+00 4071.0
1 TraesCS4A01G214900 chr4A 100.000 310 0 0 2631 2940 513119476 513119167 9.140000e-160 573.0
2 TraesCS4A01G214900 chr1B 92.122 1244 93 5 754 1994 319895235 319896476 0.000000e+00 1749.0
3 TraesCS4A01G214900 chr1B 82.316 1442 224 26 754 2187 403424653 403423235 0.000000e+00 1221.0
4 TraesCS4A01G214900 chr1B 91.613 310 26 0 2631 2940 319896527 319896836 2.090000e-116 429.0
5 TraesCS4A01G214900 chr1B 82.550 298 50 2 2644 2940 288552630 288552926 8.080000e-66 261.0
6 TraesCS4A01G214900 chr4D 93.001 743 25 14 1 741 74599861 74600578 0.000000e+00 1059.0
7 TraesCS4A01G214900 chr4B 90.993 755 20 22 1 741 106955571 106956291 0.000000e+00 974.0
8 TraesCS4A01G214900 chr7B 87.602 734 78 8 774 1496 218860849 218860118 0.000000e+00 839.0
9 TraesCS4A01G214900 chr7B 81.122 196 36 1 2656 2851 218857590 218857396 3.920000e-34 156.0
10 TraesCS4A01G214900 chr5D 92.437 238 18 0 2703 2940 483230865 483230628 1.010000e-89 340.0
11 TraesCS4A01G214900 chr3D 75.960 703 146 20 1100 1794 323083178 323082491 1.010000e-89 340.0
12 TraesCS4A01G214900 chr2A 100.000 30 0 0 1174 1203 610690042 610690071 4.090000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G214900 chr4A 513119167 513122106 2939 True 2322.0 4071 100.0000 1 2940 2 chr4A.!!$R1 2939
1 TraesCS4A01G214900 chr1B 403423235 403424653 1418 True 1221.0 1221 82.3160 754 2187 1 chr1B.!!$R1 1433
2 TraesCS4A01G214900 chr1B 319895235 319896836 1601 False 1089.0 1749 91.8675 754 2940 2 chr1B.!!$F2 2186
3 TraesCS4A01G214900 chr4D 74599861 74600578 717 False 1059.0 1059 93.0010 1 741 1 chr4D.!!$F1 740
4 TraesCS4A01G214900 chr4B 106955571 106956291 720 False 974.0 974 90.9930 1 741 1 chr4B.!!$F1 740
5 TraesCS4A01G214900 chr7B 218857396 218860849 3453 True 497.5 839 84.3620 774 2851 2 chr7B.!!$R1 2077
6 TraesCS4A01G214900 chr3D 323082491 323083178 687 True 340.0 340 75.9600 1100 1794 1 chr3D.!!$R1 694

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
53 57 0.184451 AGGCACATCCATCCATCCAC 59.816 55.0 0.0 0.0 37.29 4.02 F
899 925 0.534412 CCAGCACACCACCAAAAACA 59.466 50.0 0.0 0.0 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1042 1072 0.252742 ATTCCCCTCTTCTCCACCGT 60.253 55.0 0.00 0.0 0.0 4.83 R
2734 4534 0.104672 TTCCCCAGACTGACCTCCAA 60.105 55.0 3.32 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 57 0.184451 AGGCACATCCATCCATCCAC 59.816 55.000 0.00 0.00 37.29 4.02
196 200 2.622942 CAACAGCTGCCACTCCTTTTTA 59.377 45.455 15.27 0.00 0.00 1.52
203 210 4.568956 CTGCCACTCCTTTTTATTTTGGG 58.431 43.478 0.00 0.00 0.00 4.12
204 211 3.244387 TGCCACTCCTTTTTATTTTGGGC 60.244 43.478 0.00 0.00 38.16 5.36
205 212 3.244387 GCCACTCCTTTTTATTTTGGGCA 60.244 43.478 0.00 0.00 37.62 5.36
206 213 4.745172 GCCACTCCTTTTTATTTTGGGCAA 60.745 41.667 0.00 0.00 37.62 4.52
207 214 5.559770 CCACTCCTTTTTATTTTGGGCAAT 58.440 37.500 0.00 0.00 0.00 3.56
208 215 6.706295 CCACTCCTTTTTATTTTGGGCAATA 58.294 36.000 0.00 0.00 0.00 1.90
209 216 7.337938 CCACTCCTTTTTATTTTGGGCAATAT 58.662 34.615 0.00 0.00 0.00 1.28
457 467 6.865205 TCATCATGTCATGTAACGAGATGATC 59.135 38.462 12.54 0.00 45.65 2.92
458 468 5.532557 TCATGTCATGTAACGAGATGATCC 58.467 41.667 12.54 0.00 38.01 3.36
459 469 4.322080 TGTCATGTAACGAGATGATCCC 57.678 45.455 0.00 0.00 37.65 3.85
460 470 3.960755 TGTCATGTAACGAGATGATCCCT 59.039 43.478 0.00 0.00 37.65 4.20
461 471 4.202151 TGTCATGTAACGAGATGATCCCTG 60.202 45.833 0.00 0.00 37.65 4.45
462 472 3.321968 TCATGTAACGAGATGATCCCTGG 59.678 47.826 0.00 0.00 30.67 4.45
463 473 3.026707 TGTAACGAGATGATCCCTGGA 57.973 47.619 0.00 0.00 0.00 3.86
464 474 2.693591 TGTAACGAGATGATCCCTGGAC 59.306 50.000 0.00 0.00 0.00 4.02
465 475 2.166907 AACGAGATGATCCCTGGACT 57.833 50.000 0.00 0.00 0.00 3.85
466 476 2.166907 ACGAGATGATCCCTGGACTT 57.833 50.000 0.00 0.00 0.00 3.01
467 477 1.759445 ACGAGATGATCCCTGGACTTG 59.241 52.381 0.00 0.00 0.00 3.16
468 478 1.069823 CGAGATGATCCCTGGACTTGG 59.930 57.143 0.00 0.00 0.00 3.61
469 479 0.842635 AGATGATCCCTGGACTTGGC 59.157 55.000 0.00 0.00 0.00 4.52
470 480 0.842635 GATGATCCCTGGACTTGGCT 59.157 55.000 0.00 0.00 0.00 4.75
471 481 1.213926 GATGATCCCTGGACTTGGCTT 59.786 52.381 0.00 0.00 0.00 4.35
487 497 1.153667 CTTGGCAGAGAGAGCGGAC 60.154 63.158 0.00 0.00 0.00 4.79
606 617 4.586841 TGAAGTTGGACCATTTTGTAAGGG 59.413 41.667 0.00 0.00 40.99 3.95
629 640 1.699634 CAGAGGGTCTTTGACAAGGGA 59.300 52.381 0.00 0.00 33.68 4.20
632 643 1.202940 AGGGTCTTTGACAAGGGAAGC 60.203 52.381 0.00 0.00 33.68 3.86
741 759 7.334421 GCAATAGAACCAAAGTAGATGACTGAA 59.666 37.037 0.00 0.00 38.87 3.02
742 760 8.660373 CAATAGAACCAAAGTAGATGACTGAAC 58.340 37.037 0.00 0.00 38.87 3.18
743 761 5.552178 AGAACCAAAGTAGATGACTGAACC 58.448 41.667 0.00 0.00 38.87 3.62
744 762 4.287766 ACCAAAGTAGATGACTGAACCC 57.712 45.455 0.00 0.00 38.87 4.11
745 763 3.910627 ACCAAAGTAGATGACTGAACCCT 59.089 43.478 0.00 0.00 38.87 4.34
746 764 4.020128 ACCAAAGTAGATGACTGAACCCTC 60.020 45.833 0.00 0.00 38.87 4.30
747 765 4.223923 CCAAAGTAGATGACTGAACCCTCT 59.776 45.833 0.00 0.00 38.87 3.69
748 766 5.422331 CCAAAGTAGATGACTGAACCCTCTA 59.578 44.000 0.00 0.00 38.87 2.43
749 767 6.406400 CCAAAGTAGATGACTGAACCCTCTAG 60.406 46.154 0.00 0.00 38.87 2.43
750 768 5.718801 AGTAGATGACTGAACCCTCTAGA 57.281 43.478 0.00 0.00 36.87 2.43
751 769 5.442391 AGTAGATGACTGAACCCTCTAGAC 58.558 45.833 0.00 0.00 36.87 2.59
752 770 4.601406 AGATGACTGAACCCTCTAGACT 57.399 45.455 0.00 0.00 0.00 3.24
762 780 1.379977 CTCTAGACTGTCCGCCCCA 60.380 63.158 3.76 0.00 0.00 4.96
883 909 2.892425 GGATCGAACCAGCGCCAG 60.892 66.667 2.29 0.00 0.00 4.85
899 925 0.534412 CCAGCACACCACCAAAAACA 59.466 50.000 0.00 0.00 0.00 2.83
941 968 4.708968 CGAGCTAGGGATCGCGGC 62.709 72.222 17.94 17.94 44.15 6.53
982 1010 3.762823 CCTAGGGTTTCTAGTGAAGTCGT 59.237 47.826 0.00 0.00 43.00 4.34
1011 1041 1.697291 GGGGAGGAGATGGAGGATGTT 60.697 57.143 0.00 0.00 0.00 2.71
1042 1072 3.254093 TGAGGGGACTGAAGTTGTCTA 57.746 47.619 0.00 0.00 44.43 2.59
1046 1076 1.617357 GGGACTGAAGTTGTCTACGGT 59.383 52.381 0.00 0.00 35.04 4.83
1094 1124 4.470304 GGAAGTAGAGAAGGGGAAAGCTAA 59.530 45.833 0.00 0.00 0.00 3.09
1113 1143 3.211963 GCATGGGGTGCGGATGAC 61.212 66.667 0.00 0.00 45.23 3.06
1261 1291 2.203084 TTCACGTTCCGGCAAGCA 60.203 55.556 0.00 0.00 0.00 3.91
1396 1426 2.550978 CCTATGTGGATCCGTGTGTTC 58.449 52.381 7.39 0.00 38.35 3.18
1460 1490 1.278985 TCGGTGCTGATTTCCATGAGT 59.721 47.619 0.00 0.00 0.00 3.41
1536 3321 5.282510 GGTCAAGGTCAGACTGAATATACG 58.717 45.833 6.76 0.00 36.29 3.06
1628 3413 1.392534 GTGGAAGGGGGAGAGGAGA 59.607 63.158 0.00 0.00 0.00 3.71
1662 3462 0.114168 AAGGGTTTGCTATGGTGCCA 59.886 50.000 0.00 0.00 0.00 4.92
1731 3531 0.812549 GGACACGGAGAGAAGGAGTC 59.187 60.000 0.00 0.00 0.00 3.36
1735 3535 2.572556 ACACGGAGAGAAGGAGTCTAGA 59.427 50.000 0.00 0.00 36.41 2.43
1843 3643 1.004745 CATGGTAAAGGACAGGGCAGT 59.995 52.381 0.00 0.00 0.00 4.40
1864 3664 1.446966 GAGCTTCAGTGGGAGCGAC 60.447 63.158 11.93 8.12 0.00 5.19
1885 3685 3.589735 ACAGTAGTCAGGAGAGGAGAAGA 59.410 47.826 0.00 0.00 0.00 2.87
1921 3721 3.782443 GGGTCGCGGGGTTCAGAT 61.782 66.667 6.13 0.00 0.00 2.90
1930 3730 2.224305 GCGGGGTTCAGATAGTAATGCT 60.224 50.000 0.00 0.00 0.00 3.79
1938 3738 9.998106 GGGTTCAGATAGTAATGCTATTTCTTA 57.002 33.333 0.00 0.00 40.30 2.10
1954 3754 6.634889 ATTTCTTAGAGGAAGGAAGAGCTT 57.365 37.500 0.00 0.00 36.02 3.74
2026 3826 0.748367 GTCCTCTCAAAATCCCGGCC 60.748 60.000 0.00 0.00 0.00 6.13
2085 3885 2.743553 CATCCAATTTTCAGAGCCCCT 58.256 47.619 0.00 0.00 0.00 4.79
2133 3933 3.266772 ACCCAGATGGCAGTAGATCAAAA 59.733 43.478 0.00 0.00 37.83 2.44
2138 3938 6.426328 CCAGATGGCAGTAGATCAAAATACTC 59.574 42.308 0.00 0.00 29.77 2.59
2167 3967 1.139256 GAGGAGGGGCTGCTTACTAAC 59.861 57.143 0.00 0.00 30.82 2.34
2168 3968 0.909623 GGAGGGGCTGCTTACTAACA 59.090 55.000 0.00 0.00 0.00 2.41
2169 3969 1.490910 GGAGGGGCTGCTTACTAACAT 59.509 52.381 0.00 0.00 0.00 2.71
2654 4454 0.984995 GTTGAGGGGGAAGTAGCAGT 59.015 55.000 0.00 0.00 0.00 4.40
2660 4460 2.185387 GGGGGAAGTAGCAGTTGAGTA 58.815 52.381 0.00 0.00 0.00 2.59
2666 4466 3.252974 AGTAGCAGTTGAGTATGTGGC 57.747 47.619 0.00 0.00 0.00 5.01
2694 4494 7.138692 AGTGAAGAGCAGCAATAAGTTTAAG 57.861 36.000 0.00 0.00 0.00 1.85
2701 4501 4.475944 CAGCAATAAGTTTAAGCGCTTGT 58.524 39.130 32.23 10.24 0.00 3.16
2727 4527 3.307762 GCCCAGAGAACTTTGGTAGTCAT 60.308 47.826 9.87 0.00 35.54 3.06
2731 4531 5.174395 CAGAGAACTTTGGTAGTCATGAGG 58.826 45.833 0.00 0.00 35.54 3.86
2734 4534 2.632537 ACTTTGGTAGTCATGAGGGGT 58.367 47.619 0.00 0.00 28.23 4.95
2774 4574 1.003573 GAGGGGGTGAGGAGATGGT 59.996 63.158 0.00 0.00 0.00 3.55
2831 4631 4.523282 GGGGGAGGAGGGGCAGAT 62.523 72.222 0.00 0.00 0.00 2.90
2862 4662 0.968405 ACATGAAGGCGGCAAACAAT 59.032 45.000 13.08 0.00 0.00 2.71
2882 4682 0.373716 GCTATAACAGTGGTGCACGC 59.626 55.000 11.45 6.34 39.64 5.34
2897 4697 2.192624 GCACGCAAACTCAAACACATT 58.807 42.857 0.00 0.00 0.00 2.71
2908 4708 3.808218 AACACATTGGCCGGGCTGT 62.808 57.895 29.87 22.59 0.00 4.40
2909 4709 3.443045 CACATTGGCCGGGCTGTC 61.443 66.667 29.87 2.52 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 57 2.345760 GCAATGCTGGTCCAGTGGG 61.346 63.158 20.24 8.82 33.43 4.61
89 93 2.185867 GCACATTGGCATGGCTGG 59.814 61.111 21.08 11.78 34.27 4.85
90 94 1.447140 GTGCACATTGGCATGGCTG 60.447 57.895 21.08 13.58 46.92 4.85
91 95 1.189524 AAGTGCACATTGGCATGGCT 61.190 50.000 21.04 0.00 46.92 4.75
196 200 7.352079 GGCAGCTATATATATTGCCCAAAAT 57.648 36.000 24.65 3.89 46.61 1.82
456 466 3.170362 CCAAGCCAAGTCCAGGGA 58.830 61.111 0.00 0.00 0.00 4.20
457 467 2.677875 GCCAAGCCAAGTCCAGGG 60.678 66.667 0.00 0.00 0.00 4.45
458 468 1.975407 CTGCCAAGCCAAGTCCAGG 60.975 63.158 0.00 0.00 0.00 4.45
459 469 0.959372 CTCTGCCAAGCCAAGTCCAG 60.959 60.000 0.00 0.00 0.00 3.86
460 470 1.073722 CTCTGCCAAGCCAAGTCCA 59.926 57.895 0.00 0.00 0.00 4.02
461 471 0.676151 CTCTCTGCCAAGCCAAGTCC 60.676 60.000 0.00 0.00 0.00 3.85
462 472 0.322975 TCTCTCTGCCAAGCCAAGTC 59.677 55.000 0.00 0.00 0.00 3.01
463 473 0.324285 CTCTCTCTGCCAAGCCAAGT 59.676 55.000 0.00 0.00 0.00 3.16
464 474 1.025647 GCTCTCTCTGCCAAGCCAAG 61.026 60.000 0.00 0.00 0.00 3.61
465 475 1.002868 GCTCTCTCTGCCAAGCCAA 60.003 57.895 0.00 0.00 0.00 4.52
466 476 2.667418 GCTCTCTCTGCCAAGCCA 59.333 61.111 0.00 0.00 0.00 4.75
467 477 2.511145 CGCTCTCTCTGCCAAGCC 60.511 66.667 0.00 0.00 0.00 4.35
468 478 2.511145 CCGCTCTCTCTGCCAAGC 60.511 66.667 0.00 0.00 0.00 4.01
469 479 1.153667 GTCCGCTCTCTCTGCCAAG 60.154 63.158 0.00 0.00 0.00 3.61
470 480 1.471829 TTGTCCGCTCTCTCTGCCAA 61.472 55.000 0.00 0.00 0.00 4.52
471 481 1.260538 ATTGTCCGCTCTCTCTGCCA 61.261 55.000 0.00 0.00 0.00 4.92
487 497 5.893687 TGCATAGCCATGTGTTTAAGATTG 58.106 37.500 0.00 0.00 34.40 2.67
573 584 4.710324 TGGTCCAACTTCATCGTTAACTT 58.290 39.130 3.71 0.00 0.00 2.66
606 617 3.142174 CCTTGTCAAAGACCCTCTGTTC 58.858 50.000 0.00 0.00 35.19 3.18
629 640 3.491447 GCACAAATTGAAGACAGTGGCTT 60.491 43.478 12.17 12.17 0.00 4.35
632 643 3.996150 AGCACAAATTGAAGACAGTGG 57.004 42.857 0.00 0.00 0.00 4.00
741 759 1.380112 GGCGGACAGTCTAGAGGGT 60.380 63.158 0.00 0.00 0.00 4.34
742 760 2.128507 GGGCGGACAGTCTAGAGGG 61.129 68.421 0.00 0.00 0.00 4.30
743 761 2.128507 GGGGCGGACAGTCTAGAGG 61.129 68.421 0.00 0.00 0.00 3.69
744 762 0.757188 ATGGGGCGGACAGTCTAGAG 60.757 60.000 0.00 0.00 0.00 2.43
745 763 0.325296 AATGGGGCGGACAGTCTAGA 60.325 55.000 0.00 0.00 0.00 2.43
746 764 0.541863 AAATGGGGCGGACAGTCTAG 59.458 55.000 0.00 0.00 0.00 2.43
747 765 0.539986 GAAATGGGGCGGACAGTCTA 59.460 55.000 0.00 0.00 0.00 2.59
748 766 1.299976 GAAATGGGGCGGACAGTCT 59.700 57.895 0.00 0.00 0.00 3.24
749 767 2.106683 CGAAATGGGGCGGACAGTC 61.107 63.158 0.00 0.00 0.00 3.51
750 768 2.046314 CGAAATGGGGCGGACAGT 60.046 61.111 0.00 0.00 0.00 3.55
762 780 2.104253 CGCTAACCGCCACCGAAAT 61.104 57.895 0.00 0.00 36.29 2.17
814 832 1.144057 CAGGAACCCTAGCGCGATT 59.856 57.895 12.10 0.00 29.64 3.34
883 909 1.470805 GGACTGTTTTTGGTGGTGTGC 60.471 52.381 0.00 0.00 0.00 4.57
894 920 2.765689 TTGGTGGATGGGACTGTTTT 57.234 45.000 0.00 0.00 0.00 2.43
899 925 0.251787 GGCTTTTGGTGGATGGGACT 60.252 55.000 0.00 0.00 0.00 3.85
982 1010 0.026415 ATCTCCTCCCCTCCTCCCTA 60.026 60.000 0.00 0.00 0.00 3.53
1011 1041 0.914417 GTCCCCTCATCAACCCCTCA 60.914 60.000 0.00 0.00 0.00 3.86
1042 1072 0.252742 ATTCCCCTCTTCTCCACCGT 60.253 55.000 0.00 0.00 0.00 4.83
1046 1076 3.205519 TCTTCATTCCCCTCTTCTCCA 57.794 47.619 0.00 0.00 0.00 3.86
1113 1143 1.928567 TTTCCCTACTGCCTGGGGG 60.929 63.158 0.00 0.00 43.51 5.40
1261 1291 1.470996 GCGCTCTCCTCCATCCAGAT 61.471 60.000 0.00 0.00 0.00 2.90
1460 1490 1.678627 CCCAACGTCCACATCAACAAA 59.321 47.619 0.00 0.00 0.00 2.83
1628 3413 2.343625 ACCCTTCTTCTTCTTCTGGCT 58.656 47.619 0.00 0.00 0.00 4.75
1662 3462 6.061441 TCGGGCATGTACTCATATTCAAAAT 58.939 36.000 0.00 0.00 32.47 1.82
1731 3531 4.101856 TCCCCTTGGAGGTTTAAGTCTAG 58.898 47.826 0.00 0.00 35.03 2.43
1817 3617 3.624777 CCTGTCCTTTACCATGAGCAAT 58.375 45.455 0.00 0.00 0.00 3.56
1843 3643 1.323271 CGCTCCCACTGAAGCTCCTA 61.323 60.000 0.00 0.00 0.00 2.94
1864 3664 4.229304 TCTTCTCCTCTCCTGACTACTG 57.771 50.000 0.00 0.00 0.00 2.74
1885 3685 0.823460 CGTTGCCCCAGCCATATTTT 59.177 50.000 0.00 0.00 38.69 1.82
1921 3721 9.656323 TCCTTCCTCTAAGAAATAGCATTACTA 57.344 33.333 0.00 0.00 37.38 1.82
1930 3730 7.181125 ACAAGCTCTTCCTTCCTCTAAGAAATA 59.819 37.037 0.00 0.00 37.38 1.40
1938 3738 4.357325 TGATACAAGCTCTTCCTTCCTCT 58.643 43.478 0.00 0.00 0.00 3.69
1954 3754 6.381133 TCTCCTTATCACTGCTCTTTGATACA 59.619 38.462 0.00 0.00 35.01 2.29
2035 3835 1.272872 ACCTTACTTCCTACCTCGCCA 60.273 52.381 0.00 0.00 0.00 5.69
2043 3843 4.775780 TGCTTCTTGCTACCTTACTTCCTA 59.224 41.667 0.00 0.00 43.37 2.94
2085 3885 2.741092 GGTCCTTCTGCACGACCA 59.259 61.111 11.00 0.00 44.60 4.02
2138 3938 2.146061 GCCCCTCCTCTCCATCAGG 61.146 68.421 0.00 0.00 0.00 3.86
2151 3951 2.945890 GCAATGTTAGTAAGCAGCCCCT 60.946 50.000 0.00 0.00 0.00 4.79
2641 4441 3.197983 ACATACTCAACTGCTACTTCCCC 59.802 47.826 0.00 0.00 0.00 4.81
2654 4454 3.394674 TCACTTTCGCCACATACTCAA 57.605 42.857 0.00 0.00 0.00 3.02
2660 4460 1.160137 GCTCTTCACTTTCGCCACAT 58.840 50.000 0.00 0.00 0.00 3.21
2666 4466 4.153117 ACTTATTGCTGCTCTTCACTTTCG 59.847 41.667 0.00 0.00 0.00 3.46
2701 4501 0.323629 CCAAAGTTCTCTGGGCGGTA 59.676 55.000 0.00 0.00 0.00 4.02
2727 4527 0.836400 GACTGACCTCCAACCCCTCA 60.836 60.000 0.00 0.00 0.00 3.86
2731 4531 1.679898 CCAGACTGACCTCCAACCC 59.320 63.158 3.32 0.00 0.00 4.11
2734 4534 0.104672 TTCCCCAGACTGACCTCCAA 60.105 55.000 3.32 0.00 0.00 3.53
2774 4574 3.053768 TGCAATGTATCCTCCATCCACAA 60.054 43.478 0.00 0.00 0.00 3.33
2831 4631 3.304592 CGCCTTCATGTTTTGTGTCATCA 60.305 43.478 0.00 0.00 0.00 3.07
2862 4662 1.720805 CGTGCACCACTGTTATAGCA 58.279 50.000 12.15 0.00 31.34 3.49
2871 4671 1.029408 TTGAGTTTGCGTGCACCACT 61.029 50.000 12.15 8.27 31.34 4.00
2875 4675 0.913876 GTGTTTGAGTTTGCGTGCAC 59.086 50.000 6.82 6.82 0.00 4.57
2882 4682 2.126467 CGGCCAATGTGTTTGAGTTTG 58.874 47.619 2.24 0.00 37.53 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.