Multiple sequence alignment - TraesCS4A01G214100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G214100 chr4A 100.000 8088 0 0 1 8088 512342253 512350340 0.000000e+00 14936.0
1 TraesCS4A01G214100 chr4A 84.848 66 8 2 122 186 542497545 542497481 1.880000e-06 65.8
2 TraesCS4A01G214100 chr4B 95.094 2609 93 18 5166 7753 107660302 107657708 0.000000e+00 4076.0
3 TraesCS4A01G214100 chr4B 92.969 2489 76 26 2737 5170 107662901 107660457 0.000000e+00 3535.0
4 TraesCS4A01G214100 chr4B 94.711 1437 60 8 1309 2733 107664619 107663187 0.000000e+00 2218.0
5 TraesCS4A01G214100 chr4B 86.231 1162 70 37 210 1318 107665826 107664702 0.000000e+00 1177.0
6 TraesCS4A01G214100 chr4B 96.552 58 2 0 8031 8088 107655276 107655219 6.680000e-16 97.1
7 TraesCS4A01G214100 chr4D 93.811 2052 85 25 5566 7588 75266039 75264001 0.000000e+00 3048.0
8 TraesCS4A01G214100 chr4D 87.321 1743 100 56 1778 3442 75271068 75269369 0.000000e+00 1882.0
9 TraesCS4A01G214100 chr4D 87.176 1310 86 38 493 1780 75272768 75271519 0.000000e+00 1413.0
10 TraesCS4A01G214100 chr4D 88.419 639 48 13 4490 5116 75266759 75266135 0.000000e+00 747.0
11 TraesCS4A01G214100 chr4D 87.179 624 43 12 3807 4413 75267493 75266890 0.000000e+00 675.0
12 TraesCS4A01G214100 chr4D 90.415 313 27 3 3435 3747 75267799 75267490 7.560000e-110 409.0
13 TraesCS4A01G214100 chr4D 82.589 224 17 5 197 404 75273177 75272960 2.320000e-40 178.0
14 TraesCS4A01G214100 chr4D 96.341 82 3 0 8004 8085 75263478 75263397 1.420000e-27 135.0
15 TraesCS4A01G214100 chr4D 100.000 33 0 0 7742 7774 75263868 75263836 2.440000e-05 62.1
16 TraesCS4A01G214100 chr4D 100.000 28 0 0 4741 4768 10260851 10260824 1.500000e-02 52.8
17 TraesCS4A01G214100 chr6A 83.032 277 43 3 5142 5417 59071715 59071442 1.740000e-61 248.0
18 TraesCS4A01G214100 chr6D 85.799 169 21 3 5142 5308 440223255 440223088 8.340000e-40 176.0
19 TraesCS4A01G214100 chrUn 78.829 222 39 7 4739 4956 86324723 86324940 8.460000e-30 143.0
20 TraesCS4A01G214100 chr1A 89.720 107 11 0 4395 4501 28705642 28705748 3.940000e-28 137.0
21 TraesCS4A01G214100 chr7A 87.611 113 14 0 4395 4507 48968999 48968887 1.830000e-26 132.0
22 TraesCS4A01G214100 chr7A 77.344 128 27 2 59 185 516140208 516140082 3.130000e-09 75.0
23 TraesCS4A01G214100 chr1D 89.524 105 10 1 4394 4498 353028692 353028795 1.830000e-26 132.0
24 TraesCS4A01G214100 chr1D 90.000 100 10 0 4406 4505 100458996 100459095 6.590000e-26 130.0
25 TraesCS4A01G214100 chr1D 100.000 28 0 0 4741 4768 296171227 296171254 1.500000e-02 52.8
26 TraesCS4A01G214100 chr3D 88.785 107 10 2 4398 4504 604669510 604669406 6.590000e-26 130.0
27 TraesCS4A01G214100 chr3D 98.182 55 0 1 1 55 374289949 374290002 2.400000e-15 95.3
28 TraesCS4A01G214100 chr3D 100.000 28 0 0 4741 4768 591370131 591370104 1.500000e-02 52.8
29 TraesCS4A01G214100 chr3B 87.611 113 10 3 4391 4501 505264682 505264572 2.370000e-25 128.0
30 TraesCS4A01G214100 chr3B 87.850 107 13 0 4398 4504 812340460 812340354 8.520000e-25 126.0
31 TraesCS4A01G214100 chr3B 80.916 131 22 3 54 183 10355046 10355174 5.160000e-17 100.0
32 TraesCS4A01G214100 chr2B 91.398 93 8 0 4410 4502 51645311 51645219 2.370000e-25 128.0
33 TraesCS4A01G214100 chr5D 83.193 119 19 1 56 174 65940967 65941084 3.090000e-19 108.0
34 TraesCS4A01G214100 chr5D 94.444 36 0 2 4741 4776 262450330 262450297 4.000000e-03 54.7
35 TraesCS4A01G214100 chr5B 81.538 130 16 5 55 183 137665228 137665350 5.160000e-17 100.0
36 TraesCS4A01G214100 chr2D 75.000 248 46 12 4740 4979 461386336 461386575 5.160000e-17 100.0
37 TraesCS4A01G214100 chr2A 97.222 36 1 0 4938 4973 750753173 750753138 2.440000e-05 62.1
38 TraesCS4A01G214100 chr7D 94.286 35 2 0 4739 4773 568274757 568274723 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G214100 chr4A 512342253 512350340 8087 False 14936.00 14936 100.000000 1 8088 1 chr4A.!!$F1 8087
1 TraesCS4A01G214100 chr4B 107655219 107665826 10607 True 2220.62 4076 93.111400 210 8088 5 chr4B.!!$R1 7878
2 TraesCS4A01G214100 chr4D 75263397 75273177 9780 True 949.90 3048 90.361222 197 8085 9 chr4D.!!$R2 7888

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.106469 CTCTGATGAGGGAGGGACGA 60.106 60.0 0.00 0.0 36.70 4.20 F
837 1018 0.250727 TCTCGGGCTCTTTGGGTTTG 60.251 55.0 0.00 0.0 0.00 2.93 F
1117 1298 0.396811 GGATCCCGGGTATGAACAGG 59.603 60.0 22.86 0.0 0.00 4.00 F
1119 1300 1.705997 ATCCCGGGTATGAACAGGCC 61.706 60.0 22.86 0.0 0.00 5.19 F
2191 2947 2.071778 AATGTGCCTGGTCTTGTTGT 57.928 45.0 0.00 0.0 0.00 3.32 F
3515 6202 1.059913 ACCTGGACCTCCACTCTTTG 58.940 55.0 0.00 0.0 42.01 2.77 F
4020 6716 0.180171 CACTTGACCACAGACACCCA 59.820 55.0 0.00 0.0 0.00 4.51 F
5323 8287 0.512952 CCTTGTTTTGCGTCGAGGAG 59.487 55.0 9.75 0.0 37.40 3.69 F
6748 9737 0.667993 CGCTGCCTGGTTTTTCTTCA 59.332 50.0 0.00 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1996 2746 1.129998 CTGCATTTCAGGTTCAGCGAG 59.870 52.381 0.00 0.00 39.15 5.03 R
2032 2782 2.031068 GCGCTTCTTTAGGAGCTTAAGC 59.969 50.000 20.09 20.09 42.49 3.09 R
2399 3159 3.315191 GCTTAGAGTCTCTAGCACCTGAG 59.685 52.174 17.79 10.48 29.56 3.35 R
2451 3212 8.360390 TCACTTAGTATATCACGCTCAATGATT 58.640 33.333 0.00 0.00 37.89 2.57 R
3948 6644 0.307453 CTCGAGCACTCTGGATCTCG 59.693 60.000 0.00 4.34 46.78 4.04 R
5392 8356 0.039437 ATCTACAACGCGGGCGATAG 60.039 55.000 20.98 16.32 42.83 2.08 R
5538 8502 0.181114 AGCGATTCAGGCCAGCATAA 59.819 50.000 5.01 0.00 0.00 1.90 R
6889 9878 0.676184 TCAGCATCTCATCGTAGCCC 59.324 55.000 0.00 0.00 0.00 5.19 R
7968 13249 0.108898 CCTCGGCACTTCTCTCAGTG 60.109 60.000 0.00 0.00 46.15 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.419198 CCTCGAGGCCCATCTTCG 59.581 66.667 20.67 1.01 0.00 3.79
18 19 2.279784 CTCGAGGCCCATCTTCGC 60.280 66.667 3.91 0.00 0.00 4.70
19 20 4.207281 TCGAGGCCCATCTTCGCG 62.207 66.667 0.00 0.00 0.00 5.87
20 21 4.514577 CGAGGCCCATCTTCGCGT 62.515 66.667 5.77 0.00 0.00 6.01
21 22 2.892425 GAGGCCCATCTTCGCGTG 60.892 66.667 5.77 0.00 0.00 5.34
22 23 3.371097 GAGGCCCATCTTCGCGTGA 62.371 63.158 5.77 6.51 0.00 4.35
23 24 2.435938 GGCCCATCTTCGCGTGAA 60.436 61.111 11.51 11.51 0.00 3.18
30 31 3.827784 CTTCGCGTGAAGCCGACG 61.828 66.667 24.43 2.41 44.70 5.12
35 36 3.342627 CGTGAAGCCGACGCCAAA 61.343 61.111 0.00 0.00 34.57 3.28
36 37 2.887889 CGTGAAGCCGACGCCAAAA 61.888 57.895 0.00 0.00 34.57 2.44
37 38 1.357334 GTGAAGCCGACGCCAAAAA 59.643 52.632 0.00 0.00 34.57 1.94
65 66 9.699410 ATCCTATAAATAGAGACTCTGATGAGG 57.301 37.037 15.55 12.81 37.31 3.86
66 67 8.112822 TCCTATAAATAGAGACTCTGATGAGGG 58.887 40.741 15.55 8.96 37.31 4.30
67 68 8.112822 CCTATAAATAGAGACTCTGATGAGGGA 58.887 40.741 15.55 0.00 37.31 4.20
68 69 9.177608 CTATAAATAGAGACTCTGATGAGGGAG 57.822 40.741 15.55 0.00 37.31 4.30
69 70 2.754012 AGAGACTCTGATGAGGGAGG 57.246 55.000 3.56 0.00 44.29 4.30
70 71 1.217689 AGAGACTCTGATGAGGGAGGG 59.782 57.143 3.56 0.00 44.29 4.30
71 72 1.216678 GAGACTCTGATGAGGGAGGGA 59.783 57.143 0.00 0.00 44.29 4.20
72 73 1.063266 AGACTCTGATGAGGGAGGGAC 60.063 57.143 0.00 0.00 44.29 4.46
73 74 0.396417 ACTCTGATGAGGGAGGGACG 60.396 60.000 0.00 0.00 44.29 4.79
74 75 0.106469 CTCTGATGAGGGAGGGACGA 60.106 60.000 0.00 0.00 36.70 4.20
75 76 0.558220 TCTGATGAGGGAGGGACGAT 59.442 55.000 0.00 0.00 0.00 3.73
76 77 0.678395 CTGATGAGGGAGGGACGATG 59.322 60.000 0.00 0.00 0.00 3.84
77 78 0.261696 TGATGAGGGAGGGACGATGA 59.738 55.000 0.00 0.00 0.00 2.92
78 79 1.133041 TGATGAGGGAGGGACGATGAT 60.133 52.381 0.00 0.00 0.00 2.45
79 80 1.274728 GATGAGGGAGGGACGATGATG 59.725 57.143 0.00 0.00 0.00 3.07
80 81 0.760567 TGAGGGAGGGACGATGATGG 60.761 60.000 0.00 0.00 0.00 3.51
81 82 2.105806 GAGGGAGGGACGATGATGGC 62.106 65.000 0.00 0.00 0.00 4.40
82 83 2.443394 GGGAGGGACGATGATGGCA 61.443 63.158 0.00 0.00 0.00 4.92
83 84 1.070445 GGAGGGACGATGATGGCAG 59.930 63.158 0.00 0.00 0.00 4.85
84 85 1.690219 GGAGGGACGATGATGGCAGT 61.690 60.000 0.00 0.00 0.00 4.40
85 86 0.531532 GAGGGACGATGATGGCAGTG 60.532 60.000 0.00 0.00 0.00 3.66
86 87 2.182842 GGGACGATGATGGCAGTGC 61.183 63.158 6.55 6.55 0.00 4.40
87 88 2.528743 GGACGATGATGGCAGTGCG 61.529 63.158 9.45 0.00 0.00 5.34
88 89 1.811266 GACGATGATGGCAGTGCGT 60.811 57.895 9.45 7.09 34.45 5.24
89 90 1.756375 GACGATGATGGCAGTGCGTC 61.756 60.000 9.45 15.48 38.69 5.19
90 91 1.520120 CGATGATGGCAGTGCGTCT 60.520 57.895 9.45 0.00 0.00 4.18
91 92 1.086067 CGATGATGGCAGTGCGTCTT 61.086 55.000 9.45 8.02 0.00 3.01
92 93 0.654683 GATGATGGCAGTGCGTCTTC 59.345 55.000 9.45 12.89 0.00 2.87
93 94 1.086067 ATGATGGCAGTGCGTCTTCG 61.086 55.000 9.45 0.00 40.37 3.79
94 95 2.434884 ATGGCAGTGCGTCTTCGG 60.435 61.111 9.45 0.00 37.56 4.30
97 98 3.482783 GCAGTGCGTCTTCGGCTC 61.483 66.667 0.00 0.00 37.56 4.70
98 99 2.049156 CAGTGCGTCTTCGGCTCA 60.049 61.111 0.00 0.00 37.56 4.26
99 100 2.049063 AGTGCGTCTTCGGCTCAC 60.049 61.111 0.00 0.00 37.56 3.51
100 101 2.049063 GTGCGTCTTCGGCTCACT 60.049 61.111 0.00 0.00 37.56 3.41
101 102 1.664965 GTGCGTCTTCGGCTCACTT 60.665 57.895 0.00 0.00 37.56 3.16
102 103 1.372997 TGCGTCTTCGGCTCACTTC 60.373 57.895 0.00 0.00 37.56 3.01
103 104 1.372997 GCGTCTTCGGCTCACTTCA 60.373 57.895 0.00 0.00 37.56 3.02
104 105 0.944311 GCGTCTTCGGCTCACTTCAA 60.944 55.000 0.00 0.00 37.56 2.69
105 106 1.714794 CGTCTTCGGCTCACTTCAAT 58.285 50.000 0.00 0.00 0.00 2.57
106 107 1.391485 CGTCTTCGGCTCACTTCAATG 59.609 52.381 0.00 0.00 0.00 2.82
107 108 1.129437 GTCTTCGGCTCACTTCAATGC 59.871 52.381 0.00 0.00 0.00 3.56
108 109 1.002430 TCTTCGGCTCACTTCAATGCT 59.998 47.619 0.00 0.00 0.00 3.79
109 110 1.396301 CTTCGGCTCACTTCAATGCTC 59.604 52.381 0.00 0.00 0.00 4.26
110 111 0.737367 TCGGCTCACTTCAATGCTCG 60.737 55.000 0.00 0.00 0.00 5.03
111 112 1.016130 CGGCTCACTTCAATGCTCGT 61.016 55.000 0.00 0.00 0.00 4.18
112 113 1.735700 CGGCTCACTTCAATGCTCGTA 60.736 52.381 0.00 0.00 0.00 3.43
113 114 1.929836 GGCTCACTTCAATGCTCGTAG 59.070 52.381 0.00 0.00 0.00 3.51
114 115 2.611518 GCTCACTTCAATGCTCGTAGT 58.388 47.619 0.00 0.00 0.00 2.73
115 116 2.996621 GCTCACTTCAATGCTCGTAGTT 59.003 45.455 0.00 0.00 0.00 2.24
116 117 3.181526 GCTCACTTCAATGCTCGTAGTTG 60.182 47.826 0.00 0.00 0.00 3.16
117 118 3.990092 TCACTTCAATGCTCGTAGTTGT 58.010 40.909 0.00 0.00 0.00 3.32
118 119 3.987868 TCACTTCAATGCTCGTAGTTGTC 59.012 43.478 0.00 0.00 0.00 3.18
119 120 2.987149 ACTTCAATGCTCGTAGTTGTCG 59.013 45.455 0.00 0.00 0.00 4.35
120 121 1.346365 TCAATGCTCGTAGTTGTCGC 58.654 50.000 0.00 0.00 0.00 5.19
121 122 1.067846 TCAATGCTCGTAGTTGTCGCT 60.068 47.619 0.00 0.00 0.00 4.93
122 123 2.162809 TCAATGCTCGTAGTTGTCGCTA 59.837 45.455 0.00 0.00 0.00 4.26
123 124 2.476873 ATGCTCGTAGTTGTCGCTAG 57.523 50.000 0.00 0.00 0.00 3.42
124 125 1.445871 TGCTCGTAGTTGTCGCTAGA 58.554 50.000 0.00 0.00 0.00 2.43
125 126 2.014857 TGCTCGTAGTTGTCGCTAGAT 58.985 47.619 0.00 0.00 0.00 1.98
126 127 2.223272 TGCTCGTAGTTGTCGCTAGATG 60.223 50.000 0.00 0.00 0.00 2.90
127 128 2.855187 GCTCGTAGTTGTCGCTAGATGG 60.855 54.545 0.00 0.00 0.00 3.51
128 129 2.355132 CTCGTAGTTGTCGCTAGATGGT 59.645 50.000 0.00 0.00 0.00 3.55
129 130 2.353889 TCGTAGTTGTCGCTAGATGGTC 59.646 50.000 0.00 0.00 0.00 4.02
130 131 2.355132 CGTAGTTGTCGCTAGATGGTCT 59.645 50.000 0.00 0.00 0.00 3.85
131 132 3.558829 CGTAGTTGTCGCTAGATGGTCTA 59.441 47.826 0.00 0.00 0.00 2.59
132 133 4.552378 CGTAGTTGTCGCTAGATGGTCTAC 60.552 50.000 0.00 0.00 0.00 2.59
133 134 2.355132 AGTTGTCGCTAGATGGTCTACG 59.645 50.000 0.00 0.00 0.00 3.51
134 135 2.320745 TGTCGCTAGATGGTCTACGA 57.679 50.000 0.00 7.23 33.52 3.43
135 136 2.635714 TGTCGCTAGATGGTCTACGAA 58.364 47.619 0.00 3.65 35.75 3.85
136 137 2.353889 TGTCGCTAGATGGTCTACGAAC 59.646 50.000 0.00 7.88 35.75 3.95
137 138 2.613133 GTCGCTAGATGGTCTACGAACT 59.387 50.000 0.00 0.00 35.75 3.01
138 139 3.065095 GTCGCTAGATGGTCTACGAACTT 59.935 47.826 0.00 0.00 35.75 2.66
139 140 3.064958 TCGCTAGATGGTCTACGAACTTG 59.935 47.826 0.00 0.00 33.25 3.16
140 141 3.064958 CGCTAGATGGTCTACGAACTTGA 59.935 47.826 0.00 0.00 30.61 3.02
141 142 4.438336 CGCTAGATGGTCTACGAACTTGAA 60.438 45.833 0.00 0.00 30.61 2.69
142 143 5.593010 GCTAGATGGTCTACGAACTTGAAT 58.407 41.667 0.00 0.00 0.00 2.57
143 144 5.460419 GCTAGATGGTCTACGAACTTGAATG 59.540 44.000 0.00 0.00 0.00 2.67
144 145 4.184629 AGATGGTCTACGAACTTGAATGC 58.815 43.478 0.00 0.00 0.00 3.56
145 146 3.394674 TGGTCTACGAACTTGAATGCA 57.605 42.857 0.00 0.00 0.00 3.96
146 147 3.734463 TGGTCTACGAACTTGAATGCAA 58.266 40.909 0.00 0.00 0.00 4.08
147 148 4.323417 TGGTCTACGAACTTGAATGCAAT 58.677 39.130 0.00 0.00 32.68 3.56
148 149 4.759693 TGGTCTACGAACTTGAATGCAATT 59.240 37.500 0.00 0.00 40.93 2.32
149 150 5.240623 TGGTCTACGAACTTGAATGCAATTT 59.759 36.000 0.00 0.00 36.07 1.82
150 151 6.149633 GGTCTACGAACTTGAATGCAATTTT 58.850 36.000 0.00 0.00 36.07 1.82
151 152 6.640907 GGTCTACGAACTTGAATGCAATTTTT 59.359 34.615 0.00 0.00 36.07 1.94
263 264 2.842496 GGGGGTTGCTTACTACCTAAGT 59.158 50.000 0.00 0.00 41.01 2.24
314 316 0.599558 GGCTCTTTGCAACAGCATCA 59.400 50.000 24.30 0.00 45.15 3.07
329 347 1.142465 GCATCACATGGATCTCACCCT 59.858 52.381 0.00 0.00 32.57 4.34
336 354 3.524789 ACATGGATCTCACCCTCAATTCA 59.475 43.478 0.00 0.00 0.00 2.57
346 364 2.217750 CCCTCAATTCACACGACAACA 58.782 47.619 0.00 0.00 0.00 3.33
347 365 2.224079 CCCTCAATTCACACGACAACAG 59.776 50.000 0.00 0.00 0.00 3.16
358 376 5.050904 TCACACGACAACAGTAAAATAACCG 60.051 40.000 0.00 0.00 0.00 4.44
384 402 1.506262 CAAATTTGACCCCGCTCCG 59.494 57.895 13.08 0.00 0.00 4.63
385 403 2.340328 AAATTTGACCCCGCTCCGC 61.340 57.895 0.00 0.00 0.00 5.54
386 404 2.764637 AAATTTGACCCCGCTCCGCT 62.765 55.000 0.00 0.00 0.00 5.52
395 413 3.793144 CGCTCCGCTCCAAGCAAC 61.793 66.667 0.00 0.00 42.58 4.17
397 415 2.260869 GCTCCGCTCCAAGCAACAA 61.261 57.895 0.00 0.00 42.58 2.83
398 416 1.795170 GCTCCGCTCCAAGCAACAAA 61.795 55.000 0.00 0.00 42.58 2.83
399 417 0.667993 CTCCGCTCCAAGCAACAAAA 59.332 50.000 0.00 0.00 42.58 2.44
400 418 1.066908 CTCCGCTCCAAGCAACAAAAA 59.933 47.619 0.00 0.00 42.58 1.94
443 461 1.767681 ACCATCCAGATTCCAGAGCTC 59.232 52.381 5.27 5.27 0.00 4.09
507 675 8.580431 AGAACACGAAAAAGAAATAAAAACACG 58.420 29.630 0.00 0.00 0.00 4.49
516 684 7.599054 AAGAAATAAAAACACGAAACGCTAC 57.401 32.000 0.00 0.00 0.00 3.58
570 738 1.572941 GGAAAAAGTCCACGTCCGC 59.427 57.895 0.00 0.00 46.97 5.54
571 739 1.572941 GAAAAAGTCCACGTCCGCC 59.427 57.895 0.00 0.00 0.00 6.13
572 740 1.848932 GAAAAAGTCCACGTCCGCCC 61.849 60.000 0.00 0.00 0.00 6.13
573 741 3.837570 AAAAGTCCACGTCCGCCCC 62.838 63.158 0.00 0.00 0.00 5.80
616 784 3.513566 TCCCCAACCCCAACCCAC 61.514 66.667 0.00 0.00 0.00 4.61
626 794 0.840722 CCCAACCCACTCTACCCAGT 60.841 60.000 0.00 0.00 0.00 4.00
627 795 0.613777 CCAACCCACTCTACCCAGTC 59.386 60.000 0.00 0.00 0.00 3.51
628 796 1.645710 CAACCCACTCTACCCAGTCT 58.354 55.000 0.00 0.00 0.00 3.24
629 797 1.978580 CAACCCACTCTACCCAGTCTT 59.021 52.381 0.00 0.00 0.00 3.01
630 798 2.372172 CAACCCACTCTACCCAGTCTTT 59.628 50.000 0.00 0.00 0.00 2.52
631 799 2.258109 ACCCACTCTACCCAGTCTTTC 58.742 52.381 0.00 0.00 0.00 2.62
632 800 2.158143 ACCCACTCTACCCAGTCTTTCT 60.158 50.000 0.00 0.00 0.00 2.52
633 801 2.907042 CCCACTCTACCCAGTCTTTCTT 59.093 50.000 0.00 0.00 0.00 2.52
645 813 5.830457 CCCAGTCTTTCTTTCTTTCTTTCCT 59.170 40.000 0.00 0.00 0.00 3.36
699 867 1.281925 ACAAATCTGATCCGCCCCCT 61.282 55.000 0.00 0.00 0.00 4.79
715 883 1.077716 CCTCCATTCCCACGAACCC 60.078 63.158 0.00 0.00 0.00 4.11
829 1010 2.235402 TCGGTAAAATTCTCGGGCTCTT 59.765 45.455 0.00 0.00 0.00 2.85
837 1018 0.250727 TCTCGGGCTCTTTGGGTTTG 60.251 55.000 0.00 0.00 0.00 2.93
857 1038 2.128507 GGGTCAGGAGCTAGGTCGG 61.129 68.421 15.43 10.36 0.00 4.79
859 1040 2.128507 GTCAGGAGCTAGGTCGGGG 61.129 68.421 15.43 7.66 0.00 5.73
860 1041 2.840102 CAGGAGCTAGGTCGGGGG 60.840 72.222 15.43 1.66 0.00 5.40
861 1042 4.862823 AGGAGCTAGGTCGGGGGC 62.863 72.222 15.43 1.68 0.00 5.80
882 1063 3.607661 GAGGGATCGAGTCGGGGC 61.608 72.222 13.54 2.20 0.00 5.80
910 1091 2.047274 CGGCGTGGTGGATCTTGT 60.047 61.111 0.00 0.00 0.00 3.16
936 1117 5.110814 TGATTGATCAGGGGTATTTCGTT 57.889 39.130 0.00 0.00 32.11 3.85
937 1118 5.123227 TGATTGATCAGGGGTATTTCGTTC 58.877 41.667 0.00 0.00 32.11 3.95
947 1128 2.277084 GTATTTCGTTCGGTGCAGGAT 58.723 47.619 0.00 0.00 0.00 3.24
961 1142 2.903135 TGCAGGATTTAGGGTTTTTGGG 59.097 45.455 0.00 0.00 0.00 4.12
1117 1298 0.396811 GGATCCCGGGTATGAACAGG 59.603 60.000 22.86 0.00 0.00 4.00
1119 1300 1.705997 ATCCCGGGTATGAACAGGCC 61.706 60.000 22.86 0.00 0.00 5.19
1236 1419 8.844244 AGATTAATTATGGTTCTGATGCTGTTC 58.156 33.333 0.00 0.00 0.00 3.18
1241 1424 4.836125 TGGTTCTGATGCTGTTCTTTTC 57.164 40.909 0.00 0.00 0.00 2.29
1242 1425 4.464008 TGGTTCTGATGCTGTTCTTTTCT 58.536 39.130 0.00 0.00 0.00 2.52
1243 1426 4.889409 TGGTTCTGATGCTGTTCTTTTCTT 59.111 37.500 0.00 0.00 0.00 2.52
1244 1427 5.360714 TGGTTCTGATGCTGTTCTTTTCTTT 59.639 36.000 0.00 0.00 0.00 2.52
1245 1428 6.127366 TGGTTCTGATGCTGTTCTTTTCTTTT 60.127 34.615 0.00 0.00 0.00 2.27
1246 1429 6.758416 GGTTCTGATGCTGTTCTTTTCTTTTT 59.242 34.615 0.00 0.00 0.00 1.94
1247 1430 7.920682 GGTTCTGATGCTGTTCTTTTCTTTTTA 59.079 33.333 0.00 0.00 0.00 1.52
1248 1431 9.301153 GTTCTGATGCTGTTCTTTTCTTTTTAA 57.699 29.630 0.00 0.00 0.00 1.52
1300 1483 4.899457 TCCATCCTGTCCGACTTATGTTAT 59.101 41.667 0.00 0.00 0.00 1.89
1305 1488 7.273320 TCCTGTCCGACTTATGTTATTAGAG 57.727 40.000 0.00 0.00 0.00 2.43
1367 1642 4.208632 GCGGTGTATCTGCAGCTT 57.791 55.556 9.47 1.05 46.78 3.74
1374 1649 3.452474 GTGTATCTGCAGCTTGTCTAGG 58.548 50.000 9.47 0.00 0.00 3.02
1553 1833 5.061179 GTGGTATCTGTTGTTAACCTGTGT 58.939 41.667 2.48 0.00 0.00 3.72
1636 1917 9.965824 CATGGAATAAAACTTGTTTGTTACTCT 57.034 29.630 0.00 0.00 0.00 3.24
1750 2032 4.359706 GGTGATTTCAAACTTGTGACCAC 58.640 43.478 0.00 0.00 0.00 4.16
1957 2707 4.216257 GCAGTGCTCTCCAATTTAACTTGA 59.784 41.667 8.18 0.00 0.00 3.02
1967 2717 7.719193 TCTCCAATTTAACTTGACATCTTCACA 59.281 33.333 7.10 0.00 32.26 3.58
2184 2940 6.859420 AAATTTTGTTAAATGTGCCTGGTC 57.141 33.333 0.00 0.00 34.27 4.02
2191 2947 2.071778 AATGTGCCTGGTCTTGTTGT 57.928 45.000 0.00 0.00 0.00 3.32
2311 3068 6.292488 CGTCTAAGTTTTATGTTTCCACGTGT 60.292 38.462 15.65 0.00 0.00 4.49
2312 3069 6.849305 GTCTAAGTTTTATGTTTCCACGTGTG 59.151 38.462 15.65 6.24 0.00 3.82
2396 3156 5.648092 ACGCTGATTTAGTTATCTTGCCTTT 59.352 36.000 0.00 0.00 0.00 3.11
2399 3159 7.218963 CGCTGATTTAGTTATCTTGCCTTTTTC 59.781 37.037 0.00 0.00 0.00 2.29
2518 3279 6.436843 AGAAAAAGGTGGCGATACTAATTG 57.563 37.500 0.00 0.00 0.00 2.32
2832 3882 8.970020 TCCATTTCATATTTTCACTGCATACTT 58.030 29.630 0.00 0.00 0.00 2.24
2845 3895 9.676861 TTCACTGCATACTTACTACTTAGTAGA 57.323 33.333 24.29 6.89 39.69 2.59
2846 3896 9.676861 TCACTGCATACTTACTACTTAGTAGAA 57.323 33.333 24.29 13.24 39.69 2.10
2847 3897 9.938670 CACTGCATACTTACTACTTAGTAGAAG 57.061 37.037 24.29 21.59 39.69 2.85
2903 3962 6.381801 CAATTCCTTCAGTACAAACCATGAC 58.618 40.000 0.00 0.00 0.00 3.06
3162 4225 8.750298 TGGTTCCTTTTGTTTGTTCACTTATTA 58.250 29.630 0.00 0.00 0.00 0.98
3163 4226 9.244799 GGTTCCTTTTGTTTGTTCACTTATTAG 57.755 33.333 0.00 0.00 0.00 1.73
3193 4288 7.562454 TGCATTCATCTTCTCTTATCCCATTTT 59.438 33.333 0.00 0.00 0.00 1.82
3240 4335 4.653806 TGTTTTGTTTGTTTTGCTTCCG 57.346 36.364 0.00 0.00 0.00 4.30
3242 4337 4.511826 TGTTTTGTTTGTTTTGCTTCCGTT 59.488 33.333 0.00 0.00 0.00 4.44
3332 4442 8.395633 GCCGATAAAACAACAATTACAGAGTAT 58.604 33.333 0.00 0.00 0.00 2.12
3515 6202 1.059913 ACCTGGACCTCCACTCTTTG 58.940 55.000 0.00 0.00 42.01 2.77
3536 6223 3.245229 TGTGGTTGGCACTATCCTCATTT 60.245 43.478 0.00 0.00 0.00 2.32
3542 6229 4.922206 TGGCACTATCCTCATTTGTTCTT 58.078 39.130 0.00 0.00 0.00 2.52
3552 6239 7.739498 TCCTCATTTGTTCTTACAGTAAACC 57.261 36.000 0.00 0.00 35.28 3.27
3564 6251 8.983702 TCTTACAGTAAACCCAAAAACATACT 57.016 30.769 0.00 0.00 0.00 2.12
3569 6256 7.504574 ACAGTAAACCCAAAAACATACTAGCTT 59.495 33.333 0.00 0.00 0.00 3.74
3894 6590 4.074970 TCTTTTCATCCCTGCAGAACTTC 58.925 43.478 17.39 0.00 0.00 3.01
3910 6606 9.507329 TGCAGAACTTCTTTAGTTTTGATCTAT 57.493 29.630 11.08 0.00 46.60 1.98
3948 6644 6.371548 TGTCCAATGTGAATTACAGTCTAAGC 59.628 38.462 0.00 0.00 43.80 3.09
4020 6716 0.180171 CACTTGACCACAGACACCCA 59.820 55.000 0.00 0.00 0.00 4.51
4076 6772 9.730420 GTGTTTTAGTGTATTATAATTGCAGGG 57.270 33.333 2.68 0.00 0.00 4.45
4108 6804 9.777575 CTTTTTCTTTCTGTTTTGCATTCATTT 57.222 25.926 0.00 0.00 0.00 2.32
4160 6856 7.654022 TCCAGACTTACATTTTTCTTGGTTT 57.346 32.000 0.00 0.00 0.00 3.27
4317 7016 3.550437 AGTGAGTTGAGCTGTTTCAGT 57.450 42.857 0.00 0.00 33.43 3.41
4408 7122 8.732854 TGGATAATAAAATATTCCCTGTGTCCT 58.267 33.333 0.00 0.00 0.00 3.85
4454 7209 7.600375 CGGATGTATCTAGCACTGAAATACATT 59.400 37.037 10.59 0.00 41.31 2.71
4492 7269 2.806244 AGCGACAATTAATATGGGACGC 59.194 45.455 18.32 18.32 38.32 5.19
4560 7337 6.315714 TGGAGTACATTCCACCCATTTAAAA 58.684 36.000 0.00 0.00 42.24 1.52
4577 7354 9.585099 CCATTTAAAAGCTTATTCATGCTGTTA 57.415 29.630 0.00 0.00 37.79 2.41
4668 7445 5.689383 TGTTTCCTGCAAGTTTAGATGAC 57.311 39.130 0.00 0.00 0.00 3.06
4738 7515 4.153655 CCATCTCCAAGATACATGAATGCG 59.846 45.833 0.00 0.00 32.12 4.73
4781 7558 6.544564 CGGGTTTATTGGAGCTCCTTTTATTA 59.455 38.462 32.28 8.55 36.82 0.98
4966 7754 1.549060 AGGGGGCCCAATAAACCCT 60.549 57.895 26.86 16.37 46.67 4.34
5010 7798 9.933723 TTAATAGCCGTACTCTTTTCTTTAACT 57.066 29.630 0.00 0.00 0.00 2.24
5011 7799 8.843885 AATAGCCGTACTCTTTTCTTTAACTT 57.156 30.769 0.00 0.00 0.00 2.66
5012 7800 6.541111 AGCCGTACTCTTTTCTTTAACTTG 57.459 37.500 0.00 0.00 0.00 3.16
5013 7801 6.053650 AGCCGTACTCTTTTCTTTAACTTGT 58.946 36.000 0.00 0.00 0.00 3.16
5014 7802 7.212274 AGCCGTACTCTTTTCTTTAACTTGTA 58.788 34.615 0.00 0.00 0.00 2.41
5015 7803 7.170489 AGCCGTACTCTTTTCTTTAACTTGTAC 59.830 37.037 0.00 0.00 0.00 2.90
5016 7804 7.042523 GCCGTACTCTTTTCTTTAACTTGTACA 60.043 37.037 0.00 0.00 0.00 2.90
5017 7805 8.985805 CCGTACTCTTTTCTTTAACTTGTACAT 58.014 33.333 0.00 0.00 0.00 2.29
5081 7886 3.560025 CCAGTTAAAGAGGGCACATGAGT 60.560 47.826 0.00 0.00 0.00 3.41
5200 8164 8.365399 ACCAGAAAAATTAAAAAGCACTAAGC 57.635 30.769 0.00 0.00 46.19 3.09
5229 8193 2.284754 TCCAATGCAAGGTGCTAACA 57.715 45.000 8.26 0.00 45.31 2.41
5234 8198 1.210155 GCAAGGTGCTAACAAGCGG 59.790 57.895 0.00 0.00 40.96 5.52
5271 8235 0.884704 GGAAACAGCGCCTTGTCTCA 60.885 55.000 2.29 0.00 0.00 3.27
5295 8259 1.464734 GTGAAGGAAAAGGGCCTAGC 58.535 55.000 6.41 0.00 33.76 3.42
5323 8287 0.512952 CCTTGTTTTGCGTCGAGGAG 59.487 55.000 9.75 0.00 37.40 3.69
5369 8333 2.550699 TAACCGCTCATTGCCTGGGG 62.551 60.000 0.00 0.00 38.78 4.96
5388 8352 1.515521 GAATAAATCCTGGCGCCCGG 61.516 60.000 29.54 29.54 0.00 5.73
5407 8371 4.444838 TGCTATCGCCCGCGTTGT 62.445 61.111 4.92 0.00 40.74 3.32
5420 8384 0.938008 GCGTTGTAGATGCCCTTAGC 59.062 55.000 0.00 0.00 44.14 3.09
5445 8409 6.795114 CGGAATTATTACGTGAATGTAATGGC 59.205 38.462 15.18 4.94 43.14 4.40
5460 8424 5.682659 TGTAATGGCGCCTACCTTATAAAA 58.317 37.500 29.70 1.81 0.00 1.52
5497 8461 5.305386 TGATGATGGAATGGAGAACGATACT 59.695 40.000 0.00 0.00 0.00 2.12
5580 8544 3.957497 TGTACTTGATGTTTTGGCCTTGT 59.043 39.130 3.32 0.00 0.00 3.16
5908 8878 3.882888 CACTCTGCCTTTTTGGTTCTGTA 59.117 43.478 0.00 0.00 38.35 2.74
6019 8989 1.934463 CAGCGTGTTCTTCAGCGTT 59.066 52.632 0.00 0.00 34.34 4.84
6270 9258 4.707030 CATGCTTTGGATAGTTTCTGCA 57.293 40.909 0.00 0.00 0.00 4.41
6282 9270 7.147976 GGATAGTTTCTGCAACATCAAAACTT 58.852 34.615 4.36 0.00 39.91 2.66
6616 9605 3.507233 GGTCAGAAAATGTGCCTGATGAA 59.493 43.478 0.00 0.00 38.92 2.57
6661 9650 1.541588 AGTTTTTCCATGCCTTCTCGC 59.458 47.619 0.00 0.00 0.00 5.03
6666 9655 0.764369 TCCATGCCTTCTCGCCCTAT 60.764 55.000 0.00 0.00 0.00 2.57
6730 9719 3.340034 TGACTTTATAAACCCCACTGCG 58.660 45.455 0.00 0.00 0.00 5.18
6733 9722 1.745232 TTATAAACCCCACTGCGCTG 58.255 50.000 13.23 13.23 0.00 5.18
6748 9737 0.667993 CGCTGCCTGGTTTTTCTTCA 59.332 50.000 0.00 0.00 0.00 3.02
6751 9740 2.669391 GCTGCCTGGTTTTTCTTCATCG 60.669 50.000 0.00 0.00 0.00 3.84
6889 9878 2.040278 TCCTGGTGAGAACAATGAAGGG 59.960 50.000 0.00 0.00 0.00 3.95
7430 10425 8.482429 GTTTGCAATTTGATCTTGTAAGACTTG 58.518 33.333 0.00 0.00 37.98 3.16
7464 10460 6.190954 ACCAATATCTAAGACGGTTTTTGC 57.809 37.500 0.00 0.00 0.00 3.68
7486 10482 2.755836 TTCACTTTGAACTGCGAAGC 57.244 45.000 0.00 0.00 42.98 3.86
7487 10483 1.003972 TTCACTTTGAACTGCGAAGCG 60.004 47.619 0.00 0.00 44.82 4.68
7488 10484 3.566906 TTCACTTTGAACTGCGAAGCGT 61.567 45.455 0.00 0.00 44.82 5.07
7490 10486 6.436671 TTCACTTTGAACTGCGAAGCGTTT 62.437 41.667 0.00 0.00 44.82 3.60
7492 10488 8.526939 TTCACTTTGAACTGCGAAGCGTTTTA 62.527 38.462 0.00 0.00 44.82 1.52
7594 10642 7.484975 GCAGTTAGCTTCAGAATTCTAGTAGA 58.515 38.462 7.86 0.00 41.15 2.59
7596 10644 9.677567 CAGTTAGCTTCAGAATTCTAGTAGATC 57.322 37.037 7.86 0.00 0.00 2.75
7597 10645 9.640952 AGTTAGCTTCAGAATTCTAGTAGATCT 57.359 33.333 7.86 0.00 0.00 2.75
7600 10648 8.532186 AGCTTCAGAATTCTAGTAGATCTTGA 57.468 34.615 7.86 1.07 0.00 3.02
7626 10685 7.734924 AAAAATGGAAAAGAATTCAAGCTCC 57.265 32.000 8.44 8.34 0.00 4.70
7641 10700 2.859526 GCTCCTTGCAGCTAAATTCC 57.140 50.000 0.00 0.00 42.31 3.01
7642 10701 2.373224 GCTCCTTGCAGCTAAATTCCT 58.627 47.619 0.00 0.00 42.31 3.36
7653 10712 3.008704 AGCTAAATTCCTGTACCGTTGGT 59.991 43.478 0.00 0.00 40.16 3.67
7670 10729 3.448093 TGGTAGAATGCATGGAAACCA 57.552 42.857 15.64 15.64 38.19 3.67
7676 10735 3.262405 AGAATGCATGGAAACCAATTGCT 59.738 39.130 0.00 0.00 39.46 3.91
7774 10893 0.607489 ACATGGACAGTTGCCAGAGC 60.607 55.000 0.00 0.00 39.11 4.09
7781 10900 1.163554 CAGTTGCCAGAGCTTTCCTC 58.836 55.000 0.00 0.00 40.80 3.71
7825 10944 6.737254 TTTTCCTATGAATCGTCAAGTTCC 57.263 37.500 0.00 0.00 37.30 3.62
7826 10945 5.677319 TTCCTATGAATCGTCAAGTTCCT 57.323 39.130 0.00 0.00 37.30 3.36
7827 10946 5.677319 TCCTATGAATCGTCAAGTTCCTT 57.323 39.130 0.00 0.00 37.30 3.36
7831 10950 4.829064 TGAATCGTCAAGTTCCTTTTGG 57.171 40.909 0.00 0.00 42.21 3.28
7846 10965 2.600470 TTTGGAAAAGTTGGCAGCTG 57.400 45.000 10.11 10.11 0.00 4.24
7847 10966 0.752054 TTGGAAAAGTTGGCAGCTGG 59.248 50.000 17.12 0.00 0.00 4.85
7859 10978 4.101448 AGCTGGCCCGCTACCTTG 62.101 66.667 21.39 0.00 38.76 3.61
7876 11000 0.948678 TTGTTTTGTCCCGTGCTAGC 59.051 50.000 8.10 8.10 0.00 3.42
7900 11024 0.240145 CATGCATCCACGATCCATGC 59.760 55.000 0.00 6.63 42.81 4.06
7901 11025 4.146058 GCATCCACGATCCATGCA 57.854 55.556 0.00 0.00 42.18 3.96
7907 13188 0.601046 CCACGATCCATGCATACGCT 60.601 55.000 0.00 0.00 39.64 5.07
7937 13218 4.572795 TGTCTCGTAAAGAAAATGTGTGCA 59.427 37.500 0.00 0.00 35.21 4.57
7941 13222 5.688823 TCGTAAAGAAAATGTGTGCATCAG 58.311 37.500 0.00 0.00 33.50 2.90
7948 13229 4.852134 AAATGTGTGCATCAGCTTGTAA 57.148 36.364 0.00 0.00 42.74 2.41
7957 13238 6.072008 TGTGCATCAGCTTGTAATTGTATGTT 60.072 34.615 0.00 0.00 42.74 2.71
7960 13241 7.871973 TGCATCAGCTTGTAATTGTATGTTTTT 59.128 29.630 0.00 0.00 42.74 1.94
7984 13265 0.318441 TTCCACTGAGAGAAGTGCCG 59.682 55.000 0.00 0.00 45.17 5.69
7994 13275 1.215647 GAAGTGCCGAGGATCACGT 59.784 57.895 9.86 0.00 38.19 4.49
7999 13280 0.108992 TGCCGAGGATCACGTTACAC 60.109 55.000 9.86 0.00 33.17 2.90
8000 13281 0.804933 GCCGAGGATCACGTTACACC 60.805 60.000 9.86 0.00 33.17 4.16
8002 13283 1.469251 CCGAGGATCACGTTACACCAG 60.469 57.143 9.86 0.00 33.17 4.00
8025 13611 1.988107 AGTCCTGGATCTTTCCTTGCA 59.012 47.619 0.00 0.00 43.07 4.08
8073 13659 7.713942 GGTTTTCTTTTCTCTAGTACTTGGTCA 59.286 37.037 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.419198 CGAAGATGGGCCTCGAGG 59.581 66.667 27.83 27.83 38.53 4.63
1 2 2.279784 GCGAAGATGGGCCTCGAG 60.280 66.667 16.10 5.13 0.00 4.04
2 3 4.207281 CGCGAAGATGGGCCTCGA 62.207 66.667 16.10 0.00 0.00 4.04
3 4 4.514577 ACGCGAAGATGGGCCTCG 62.515 66.667 15.93 6.84 0.00 4.63
4 5 2.852495 TTCACGCGAAGATGGGCCTC 62.852 60.000 15.93 0.00 0.00 4.70
6 7 2.435938 TTCACGCGAAGATGGGCC 60.436 61.111 15.93 0.00 0.00 5.80
18 19 2.381665 TTTTTGGCGTCGGCTTCACG 62.382 55.000 20.29 0.00 39.81 4.35
19 20 1.357334 TTTTTGGCGTCGGCTTCAC 59.643 52.632 20.29 0.00 39.81 3.18
20 21 3.829048 TTTTTGGCGTCGGCTTCA 58.171 50.000 20.29 1.03 39.81 3.02
39 40 9.699410 CCTCATCAGAGTCTCTATTTATAGGAT 57.301 37.037 0.94 0.00 40.40 3.24
40 41 8.112822 CCCTCATCAGAGTCTCTATTTATAGGA 58.887 40.741 0.94 0.00 40.40 2.94
41 42 8.112822 TCCCTCATCAGAGTCTCTATTTATAGG 58.887 40.741 0.94 5.33 40.40 2.57
42 43 9.177608 CTCCCTCATCAGAGTCTCTATTTATAG 57.822 40.741 0.94 0.00 40.40 1.31
43 44 8.112822 CCTCCCTCATCAGAGTCTCTATTTATA 58.887 40.741 0.94 0.00 40.40 0.98
44 45 6.953520 CCTCCCTCATCAGAGTCTCTATTTAT 59.046 42.308 0.94 0.00 40.40 1.40
45 46 6.310941 CCTCCCTCATCAGAGTCTCTATTTA 58.689 44.000 0.94 0.00 40.40 1.40
46 47 5.147032 CCTCCCTCATCAGAGTCTCTATTT 58.853 45.833 0.94 0.00 40.40 1.40
47 48 4.449081 CCCTCCCTCATCAGAGTCTCTATT 60.449 50.000 0.94 0.00 40.40 1.73
48 49 3.075882 CCCTCCCTCATCAGAGTCTCTAT 59.924 52.174 0.94 0.00 40.40 1.98
49 50 2.445145 CCCTCCCTCATCAGAGTCTCTA 59.555 54.545 0.94 0.00 40.40 2.43
50 51 1.217689 CCCTCCCTCATCAGAGTCTCT 59.782 57.143 0.00 0.00 40.40 3.10
51 52 1.216678 TCCCTCCCTCATCAGAGTCTC 59.783 57.143 0.00 0.00 40.40 3.36
52 53 1.063266 GTCCCTCCCTCATCAGAGTCT 60.063 57.143 0.00 0.00 40.40 3.24
53 54 1.408969 GTCCCTCCCTCATCAGAGTC 58.591 60.000 0.00 0.00 40.40 3.36
54 55 0.396417 CGTCCCTCCCTCATCAGAGT 60.396 60.000 0.00 0.00 40.40 3.24
55 56 0.106469 TCGTCCCTCCCTCATCAGAG 60.106 60.000 0.00 0.00 41.72 3.35
56 57 0.558220 ATCGTCCCTCCCTCATCAGA 59.442 55.000 0.00 0.00 0.00 3.27
57 58 0.678395 CATCGTCCCTCCCTCATCAG 59.322 60.000 0.00 0.00 0.00 2.90
58 59 0.261696 TCATCGTCCCTCCCTCATCA 59.738 55.000 0.00 0.00 0.00 3.07
59 60 1.274728 CATCATCGTCCCTCCCTCATC 59.725 57.143 0.00 0.00 0.00 2.92
60 61 1.346062 CATCATCGTCCCTCCCTCAT 58.654 55.000 0.00 0.00 0.00 2.90
61 62 0.760567 CCATCATCGTCCCTCCCTCA 60.761 60.000 0.00 0.00 0.00 3.86
62 63 2.053618 CCATCATCGTCCCTCCCTC 58.946 63.158 0.00 0.00 0.00 4.30
63 64 2.143419 GCCATCATCGTCCCTCCCT 61.143 63.158 0.00 0.00 0.00 4.20
64 65 2.388890 CTGCCATCATCGTCCCTCCC 62.389 65.000 0.00 0.00 0.00 4.30
65 66 1.070445 CTGCCATCATCGTCCCTCC 59.930 63.158 0.00 0.00 0.00 4.30
66 67 0.531532 CACTGCCATCATCGTCCCTC 60.532 60.000 0.00 0.00 0.00 4.30
67 68 1.524002 CACTGCCATCATCGTCCCT 59.476 57.895 0.00 0.00 0.00 4.20
68 69 2.182842 GCACTGCCATCATCGTCCC 61.183 63.158 0.00 0.00 0.00 4.46
69 70 2.528743 CGCACTGCCATCATCGTCC 61.529 63.158 0.00 0.00 0.00 4.79
70 71 1.756375 GACGCACTGCCATCATCGTC 61.756 60.000 0.00 0.00 39.25 4.20
71 72 1.811266 GACGCACTGCCATCATCGT 60.811 57.895 0.00 0.00 0.00 3.73
72 73 1.086067 AAGACGCACTGCCATCATCG 61.086 55.000 0.00 0.00 0.00 3.84
73 74 0.654683 GAAGACGCACTGCCATCATC 59.345 55.000 0.00 0.00 0.00 2.92
74 75 1.086067 CGAAGACGCACTGCCATCAT 61.086 55.000 0.00 0.00 0.00 2.45
75 76 1.737735 CGAAGACGCACTGCCATCA 60.738 57.895 0.00 0.00 0.00 3.07
76 77 2.456119 CCGAAGACGCACTGCCATC 61.456 63.158 0.00 0.00 38.29 3.51
77 78 2.434884 CCGAAGACGCACTGCCAT 60.435 61.111 0.00 0.00 38.29 4.40
80 81 3.482783 GAGCCGAAGACGCACTGC 61.483 66.667 0.00 0.00 38.29 4.40
81 82 2.049156 TGAGCCGAAGACGCACTG 60.049 61.111 0.00 0.00 38.29 3.66
82 83 2.049063 GTGAGCCGAAGACGCACT 60.049 61.111 0.00 0.00 38.29 4.40
83 84 1.618640 GAAGTGAGCCGAAGACGCAC 61.619 60.000 0.00 0.00 38.29 5.34
84 85 1.372997 GAAGTGAGCCGAAGACGCA 60.373 57.895 0.00 0.00 38.29 5.24
85 86 0.944311 TTGAAGTGAGCCGAAGACGC 60.944 55.000 0.00 0.00 38.29 5.19
86 87 1.391485 CATTGAAGTGAGCCGAAGACG 59.609 52.381 0.00 0.00 39.43 4.18
87 88 1.129437 GCATTGAAGTGAGCCGAAGAC 59.871 52.381 0.00 0.00 0.00 3.01
88 89 1.002430 AGCATTGAAGTGAGCCGAAGA 59.998 47.619 0.00 0.00 0.00 2.87
89 90 1.396301 GAGCATTGAAGTGAGCCGAAG 59.604 52.381 0.00 0.00 0.00 3.79
90 91 1.442769 GAGCATTGAAGTGAGCCGAA 58.557 50.000 0.00 0.00 0.00 4.30
91 92 0.737367 CGAGCATTGAAGTGAGCCGA 60.737 55.000 0.00 0.00 0.00 5.54
92 93 1.016130 ACGAGCATTGAAGTGAGCCG 61.016 55.000 0.00 0.00 0.00 5.52
93 94 1.929836 CTACGAGCATTGAAGTGAGCC 59.070 52.381 0.00 0.00 0.00 4.70
94 95 2.611518 ACTACGAGCATTGAAGTGAGC 58.388 47.619 0.00 0.00 0.00 4.26
95 96 3.990469 ACAACTACGAGCATTGAAGTGAG 59.010 43.478 0.00 0.00 0.00 3.51
96 97 3.987868 GACAACTACGAGCATTGAAGTGA 59.012 43.478 0.00 0.00 0.00 3.41
97 98 3.181540 CGACAACTACGAGCATTGAAGTG 60.182 47.826 0.00 0.00 0.00 3.16
98 99 2.987149 CGACAACTACGAGCATTGAAGT 59.013 45.455 0.00 0.00 0.00 3.01
99 100 2.222596 GCGACAACTACGAGCATTGAAG 60.223 50.000 0.00 0.00 0.00 3.02
100 101 1.724623 GCGACAACTACGAGCATTGAA 59.275 47.619 0.00 0.00 0.00 2.69
101 102 1.067846 AGCGACAACTACGAGCATTGA 60.068 47.619 0.00 0.00 0.00 2.57
102 103 1.350193 AGCGACAACTACGAGCATTG 58.650 50.000 0.00 0.00 0.00 2.82
103 104 2.422479 TCTAGCGACAACTACGAGCATT 59.578 45.455 0.00 0.00 0.00 3.56
104 105 2.014857 TCTAGCGACAACTACGAGCAT 58.985 47.619 0.00 0.00 0.00 3.79
105 106 1.445871 TCTAGCGACAACTACGAGCA 58.554 50.000 0.00 0.00 0.00 4.26
106 107 2.376956 CATCTAGCGACAACTACGAGC 58.623 52.381 0.00 0.00 0.00 5.03
107 108 2.355132 ACCATCTAGCGACAACTACGAG 59.645 50.000 0.00 0.00 0.00 4.18
108 109 2.353889 GACCATCTAGCGACAACTACGA 59.646 50.000 0.00 0.00 0.00 3.43
109 110 2.355132 AGACCATCTAGCGACAACTACG 59.645 50.000 0.00 0.00 0.00 3.51
110 111 4.552378 CGTAGACCATCTAGCGACAACTAC 60.552 50.000 0.00 0.00 30.61 2.73
111 112 3.558829 CGTAGACCATCTAGCGACAACTA 59.441 47.826 0.00 0.00 30.61 2.24
112 113 2.355132 CGTAGACCATCTAGCGACAACT 59.645 50.000 0.00 0.00 30.61 3.16
113 114 2.353889 TCGTAGACCATCTAGCGACAAC 59.646 50.000 0.00 0.00 32.17 3.32
114 115 2.635714 TCGTAGACCATCTAGCGACAA 58.364 47.619 0.00 0.00 32.17 3.18
115 116 2.320745 TCGTAGACCATCTAGCGACA 57.679 50.000 0.00 0.00 32.17 4.35
116 117 2.613133 AGTTCGTAGACCATCTAGCGAC 59.387 50.000 8.86 6.36 34.67 5.19
117 118 2.915349 AGTTCGTAGACCATCTAGCGA 58.085 47.619 0.00 6.50 34.32 4.93
118 119 3.064958 TCAAGTTCGTAGACCATCTAGCG 59.935 47.826 0.00 0.00 34.32 4.26
119 120 4.634184 TCAAGTTCGTAGACCATCTAGC 57.366 45.455 0.00 0.00 34.32 3.42
120 121 5.460419 GCATTCAAGTTCGTAGACCATCTAG 59.540 44.000 0.00 0.00 34.32 2.43
121 122 5.105513 TGCATTCAAGTTCGTAGACCATCTA 60.106 40.000 0.00 0.00 34.32 1.98
122 123 4.184629 GCATTCAAGTTCGTAGACCATCT 58.815 43.478 0.00 0.00 34.32 2.90
123 124 3.932710 TGCATTCAAGTTCGTAGACCATC 59.067 43.478 0.00 0.00 34.32 3.51
124 125 3.937814 TGCATTCAAGTTCGTAGACCAT 58.062 40.909 0.00 0.00 34.32 3.55
125 126 3.394674 TGCATTCAAGTTCGTAGACCA 57.605 42.857 0.00 0.00 34.32 4.02
126 127 4.946784 ATTGCATTCAAGTTCGTAGACC 57.053 40.909 0.00 0.00 33.01 3.85
127 128 7.623268 AAAAATTGCATTCAAGTTCGTAGAC 57.377 32.000 0.00 0.00 39.27 2.59
197 198 9.813446 GCATTTCAATGATATCCTTTTCTCTTT 57.187 29.630 3.60 0.00 38.70 2.52
198 199 8.974238 TGCATTTCAATGATATCCTTTTCTCTT 58.026 29.630 3.60 0.00 38.70 2.85
199 200 8.529424 TGCATTTCAATGATATCCTTTTCTCT 57.471 30.769 3.60 0.00 38.70 3.10
202 203 9.415544 GGTATGCATTTCAATGATATCCTTTTC 57.584 33.333 3.54 0.00 38.70 2.29
208 209 6.839124 TGGGGTATGCATTTCAATGATATC 57.161 37.500 3.54 0.00 38.70 1.63
219 220 5.163216 CCATATTTGGTTTGGGGTATGCATT 60.163 40.000 3.54 0.00 38.30 3.56
222 223 3.070878 CCCATATTTGGTTTGGGGTATGC 59.929 47.826 1.26 0.00 45.37 3.14
245 246 6.475596 TGGATACTTAGGTAGTAAGCAACC 57.524 41.667 0.00 0.00 42.45 3.77
263 264 7.946207 TGCAAAGTTTGAGTTTTGTATGGATA 58.054 30.769 19.82 0.00 36.81 2.59
276 277 2.991190 GCCATGTGATGCAAAGTTTGAG 59.009 45.455 19.82 0.00 0.00 3.02
277 278 2.629137 AGCCATGTGATGCAAAGTTTGA 59.371 40.909 19.82 5.11 0.00 2.69
278 279 2.991190 GAGCCATGTGATGCAAAGTTTG 59.009 45.455 11.41 11.41 0.00 2.93
314 316 3.524789 TGAATTGAGGGTGAGATCCATGT 59.475 43.478 0.00 0.00 0.00 3.21
329 347 6.424176 TTTTACTGTTGTCGTGTGAATTGA 57.576 33.333 0.00 0.00 0.00 2.57
336 354 4.318974 GCGGTTATTTTACTGTTGTCGTGT 60.319 41.667 0.00 0.00 0.00 4.49
346 364 3.158676 TGCTTTGGGCGGTTATTTTACT 58.841 40.909 0.00 0.00 45.43 2.24
347 365 3.579335 TGCTTTGGGCGGTTATTTTAC 57.421 42.857 0.00 0.00 45.43 2.01
358 376 1.522668 GGGTCAAATTTGCTTTGGGC 58.477 50.000 13.54 0.00 43.71 5.36
384 402 2.307934 TGGTTTTTGTTGCTTGGAGC 57.692 45.000 0.00 0.00 42.82 4.70
385 403 4.453819 TGTTTTGGTTTTTGTTGCTTGGAG 59.546 37.500 0.00 0.00 0.00 3.86
386 404 4.389374 TGTTTTGGTTTTTGTTGCTTGGA 58.611 34.783 0.00 0.00 0.00 3.53
388 406 6.142002 CAGTTTGTTTTGGTTTTTGTTGCTTG 59.858 34.615 0.00 0.00 0.00 4.01
390 408 5.529060 TCAGTTTGTTTTGGTTTTTGTTGCT 59.471 32.000 0.00 0.00 0.00 3.91
391 409 5.752712 TCAGTTTGTTTTGGTTTTTGTTGC 58.247 33.333 0.00 0.00 0.00 4.17
392 410 7.166638 GGTTTCAGTTTGTTTTGGTTTTTGTTG 59.833 33.333 0.00 0.00 0.00 3.33
393 411 7.197017 GGTTTCAGTTTGTTTTGGTTTTTGTT 58.803 30.769 0.00 0.00 0.00 2.83
395 413 6.016693 AGGGTTTCAGTTTGTTTTGGTTTTTG 60.017 34.615 0.00 0.00 0.00 2.44
397 415 5.626142 AGGGTTTCAGTTTGTTTTGGTTTT 58.374 33.333 0.00 0.00 0.00 2.43
398 416 5.235850 AGGGTTTCAGTTTGTTTTGGTTT 57.764 34.783 0.00 0.00 0.00 3.27
399 417 4.901197 AGGGTTTCAGTTTGTTTTGGTT 57.099 36.364 0.00 0.00 0.00 3.67
400 418 4.284746 TGAAGGGTTTCAGTTTGTTTTGGT 59.715 37.500 0.00 0.00 38.37 3.67
443 461 0.815095 GGCTTTATCCGGTGGTTTGG 59.185 55.000 0.00 0.00 0.00 3.28
480 498 9.670180 GTGTTTTTATTTCTTTTTCGTGTTCTG 57.330 29.630 0.00 0.00 0.00 3.02
482 500 8.577110 TCGTGTTTTTATTTCTTTTTCGTGTTC 58.423 29.630 0.00 0.00 0.00 3.18
484 502 8.450385 TTCGTGTTTTTATTTCTTTTTCGTGT 57.550 26.923 0.00 0.00 0.00 4.49
485 503 9.179211 GTTTCGTGTTTTTATTTCTTTTTCGTG 57.821 29.630 0.00 0.00 0.00 4.35
486 504 8.097305 CGTTTCGTGTTTTTATTTCTTTTTCGT 58.903 29.630 0.00 0.00 0.00 3.85
487 505 7.106426 GCGTTTCGTGTTTTTATTTCTTTTTCG 59.894 33.333 0.00 0.00 0.00 3.46
488 506 8.105742 AGCGTTTCGTGTTTTTATTTCTTTTTC 58.894 29.630 0.00 0.00 0.00 2.29
491 509 7.911727 AGTAGCGTTTCGTGTTTTTATTTCTTT 59.088 29.630 0.00 0.00 0.00 2.52
507 675 6.415573 GCAATTCTAGACTAGAGTAGCGTTTC 59.584 42.308 11.94 0.00 35.96 2.78
516 684 3.244044 GGGCCTGCAATTCTAGACTAGAG 60.244 52.174 11.94 2.99 35.96 2.43
572 740 3.060000 GAAGGGAAAACGCGGGGG 61.060 66.667 12.47 0.00 0.00 5.40
573 741 2.033602 AGAAGGGAAAACGCGGGG 59.966 61.111 12.47 0.00 0.00 5.73
616 784 6.764379 AGAAAGAAAGAAAGACTGGGTAGAG 58.236 40.000 0.00 0.00 0.00 2.43
626 794 8.272173 TCTTGGTAGGAAAGAAAGAAAGAAAGA 58.728 33.333 0.00 0.00 30.79 2.52
627 795 8.451908 TCTTGGTAGGAAAGAAAGAAAGAAAG 57.548 34.615 0.00 0.00 30.79 2.62
628 796 8.683615 GTTCTTGGTAGGAAAGAAAGAAAGAAA 58.316 33.333 0.46 0.00 43.37 2.52
629 797 7.832187 TGTTCTTGGTAGGAAAGAAAGAAAGAA 59.168 33.333 0.46 0.00 43.37 2.52
630 798 7.282450 GTGTTCTTGGTAGGAAAGAAAGAAAGA 59.718 37.037 0.46 0.00 43.37 2.52
631 799 7.418408 GTGTTCTTGGTAGGAAAGAAAGAAAG 58.582 38.462 0.46 0.00 43.37 2.62
632 800 6.320418 GGTGTTCTTGGTAGGAAAGAAAGAAA 59.680 38.462 0.46 0.00 43.37 2.52
633 801 5.826208 GGTGTTCTTGGTAGGAAAGAAAGAA 59.174 40.000 0.46 0.00 43.37 2.52
645 813 2.307686 GGGATTGGAGGTGTTCTTGGTA 59.692 50.000 0.00 0.00 0.00 3.25
680 848 1.227383 GGGGGCGGATCAGATTTGT 59.773 57.895 0.00 0.00 0.00 2.83
699 867 1.131303 AGTGGGTTCGTGGGAATGGA 61.131 55.000 0.00 0.00 34.05 3.41
725 893 4.760047 CGTGCCAAGACGAGGGGG 62.760 72.222 0.00 0.00 42.10 5.40
829 1010 1.701757 TCCTGACCCCCAAACCCAA 60.702 57.895 0.00 0.00 0.00 4.12
837 1018 1.762858 GACCTAGCTCCTGACCCCC 60.763 68.421 0.00 0.00 0.00 5.40
857 1038 4.880426 TCGATCCCTCCCTGCCCC 62.880 72.222 0.00 0.00 0.00 5.80
859 1040 2.444895 ACTCGATCCCTCCCTGCC 60.445 66.667 0.00 0.00 0.00 4.85
860 1041 2.851071 CGACTCGATCCCTCCCTGC 61.851 68.421 0.00 0.00 0.00 4.85
861 1042 2.196925 CCGACTCGATCCCTCCCTG 61.197 68.421 0.00 0.00 0.00 4.45
862 1043 2.196229 CCGACTCGATCCCTCCCT 59.804 66.667 0.00 0.00 0.00 4.20
893 1074 2.047274 ACAAGATCCACCACGCCG 60.047 61.111 0.00 0.00 0.00 6.46
928 1109 2.684001 ATCCTGCACCGAACGAAATA 57.316 45.000 0.00 0.00 0.00 1.40
936 1117 0.988832 AACCCTAAATCCTGCACCGA 59.011 50.000 0.00 0.00 0.00 4.69
937 1118 1.834188 AAACCCTAAATCCTGCACCG 58.166 50.000 0.00 0.00 0.00 4.94
947 1128 1.041437 CCACGCCCAAAAACCCTAAA 58.959 50.000 0.00 0.00 0.00 1.85
985 1166 1.228306 ACATTTCCAAACCGGCCGA 60.228 52.632 30.73 3.37 33.14 5.54
987 1168 1.211709 CGACATTTCCAAACCGGCC 59.788 57.895 0.00 0.00 33.14 6.13
1117 1298 3.365265 CAAACACAGAGGGGCGGC 61.365 66.667 0.00 0.00 0.00 6.53
1119 1300 3.365265 GGCAAACACAGAGGGGCG 61.365 66.667 0.00 0.00 0.00 6.13
1217 1400 6.716628 AGAAAAGAACAGCATCAGAACCATAA 59.283 34.615 0.00 0.00 0.00 1.90
1263 1446 5.969423 ACAGGATGGAATGCAACAAATAAG 58.031 37.500 0.00 0.00 43.62 1.73
1305 1488 8.730680 ACATATTGTAGAGAACACATGGTTTTC 58.269 33.333 0.00 3.80 40.63 2.29
1773 2058 6.495872 TGGCTCCCATTATTCGTAGTAAGTAT 59.504 38.462 0.00 0.00 0.00 2.12
1780 2065 3.322254 AGAGTGGCTCCCATTATTCGTAG 59.678 47.826 0.00 0.00 35.28 3.51
1781 2066 3.069586 CAGAGTGGCTCCCATTATTCGTA 59.930 47.826 0.00 0.00 35.28 3.43
1782 2067 2.119495 AGAGTGGCTCCCATTATTCGT 58.881 47.619 0.00 0.00 35.28 3.85
1957 2707 6.697019 GCTTTGTGTAAAACATGTGAAGATGT 59.303 34.615 0.00 0.00 38.99 3.06
1996 2746 1.129998 CTGCATTTCAGGTTCAGCGAG 59.870 52.381 0.00 0.00 39.15 5.03
2032 2782 2.031068 GCGCTTCTTTAGGAGCTTAAGC 59.969 50.000 20.09 20.09 42.49 3.09
2311 3068 4.880120 TGCTTTTCAAAACAAATGGATGCA 59.120 33.333 0.00 0.00 0.00 3.96
2312 3069 5.007921 ACTGCTTTTCAAAACAAATGGATGC 59.992 36.000 0.00 0.00 0.00 3.91
2354 3111 6.919721 TCAGCGTACAATATAGATATGCACA 58.080 36.000 0.00 0.00 34.00 4.57
2366 3126 8.761497 GCAAGATAACTAAATCAGCGTACAATA 58.239 33.333 0.00 0.00 0.00 1.90
2367 3127 7.254795 GGCAAGATAACTAAATCAGCGTACAAT 60.255 37.037 0.00 0.00 32.89 2.71
2372 3132 4.770795 AGGCAAGATAACTAAATCAGCGT 58.229 39.130 0.00 0.00 32.89 5.07
2383 3143 5.703876 CACCTGAGAAAAAGGCAAGATAAC 58.296 41.667 0.00 0.00 38.48 1.89
2396 3156 4.040936 AGAGTCTCTAGCACCTGAGAAA 57.959 45.455 0.00 0.00 40.47 2.52
2399 3159 3.315191 GCTTAGAGTCTCTAGCACCTGAG 59.685 52.174 17.79 10.48 29.56 3.35
2451 3212 8.360390 TCACTTAGTATATCACGCTCAATGATT 58.640 33.333 0.00 0.00 37.89 2.57
3162 4225 6.541641 GGATAAGAGAAGATGAATGCAACACT 59.458 38.462 0.00 0.00 0.00 3.55
3163 4226 6.238593 GGGATAAGAGAAGATGAATGCAACAC 60.239 42.308 0.00 0.00 0.00 3.32
3165 4228 5.824624 TGGGATAAGAGAAGATGAATGCAAC 59.175 40.000 0.00 0.00 0.00 4.17
3166 4229 6.005066 TGGGATAAGAGAAGATGAATGCAA 57.995 37.500 0.00 0.00 0.00 4.08
3168 4231 7.521871 AAATGGGATAAGAGAAGATGAATGC 57.478 36.000 0.00 0.00 0.00 3.56
3169 4232 9.745880 CAAAAATGGGATAAGAGAAGATGAATG 57.254 33.333 0.00 0.00 0.00 2.67
3193 4288 4.084118 GCACACAAGACAAAAAGCAAACAA 60.084 37.500 0.00 0.00 0.00 2.83
3515 6202 2.717639 ATGAGGATAGTGCCAACCAC 57.282 50.000 0.00 0.00 45.01 4.16
3536 6223 7.463961 TGTTTTTGGGTTTACTGTAAGAACA 57.536 32.000 0.00 0.00 37.43 3.18
3542 6229 8.158789 AGCTAGTATGTTTTTGGGTTTACTGTA 58.841 33.333 0.00 0.00 0.00 2.74
3552 6239 6.494893 TGCTACAAGCTAGTATGTTTTTGG 57.505 37.500 7.67 0.00 42.97 3.28
3564 6251 5.239359 CAATGCTTCATTGCTACAAGCTA 57.761 39.130 12.70 0.00 43.38 3.32
3592 6279 5.014228 AGGGAGCCAGAAACAAATTAGTAGT 59.986 40.000 0.00 0.00 0.00 2.73
3626 6313 3.008813 CCTAGTTGCATGGATATGAGCCT 59.991 47.826 0.00 0.00 36.36 4.58
3776 6472 8.471609 TCCGTATCAAAATATAAGACAGTGTCA 58.528 33.333 24.73 5.88 34.60 3.58
3777 6473 8.867112 TCCGTATCAAAATATAAGACAGTGTC 57.133 34.615 15.78 15.78 0.00 3.67
3778 6474 7.926555 CCTCCGTATCAAAATATAAGACAGTGT 59.073 37.037 0.00 0.00 0.00 3.55
3779 6475 8.141909 TCCTCCGTATCAAAATATAAGACAGTG 58.858 37.037 0.00 0.00 0.00 3.66
3780 6476 8.246430 TCCTCCGTATCAAAATATAAGACAGT 57.754 34.615 0.00 0.00 0.00 3.55
3781 6477 8.361139 ACTCCTCCGTATCAAAATATAAGACAG 58.639 37.037 0.00 0.00 0.00 3.51
3782 6478 8.246430 ACTCCTCCGTATCAAAATATAAGACA 57.754 34.615 0.00 0.00 0.00 3.41
3858 6554 9.533831 AGGGATGAAAAGATAAACACAATTACT 57.466 29.630 0.00 0.00 0.00 2.24
3910 6606 5.832595 TCACATTGGACAAGAAAAATGAGGA 59.167 36.000 0.00 0.00 34.75 3.71
3948 6644 0.307453 CTCGAGCACTCTGGATCTCG 59.693 60.000 0.00 4.34 46.78 4.04
4020 6716 2.439507 TGCTTTTGAGAAGGTCACCTCT 59.560 45.455 0.00 0.00 33.71 3.69
4033 6729 6.551385 AAAACACAAACACAATGCTTTTGA 57.449 29.167 12.39 0.00 34.84 2.69
4070 6766 2.071778 AGAAAAAGCAAGACCCTGCA 57.928 45.000 0.00 0.00 45.18 4.41
4076 6772 6.128580 TGCAAAACAGAAAGAAAAAGCAAGAC 60.129 34.615 0.00 0.00 0.00 3.01
4285 6984 8.700051 ACAGCTCAACTCACTATATGTAGATTT 58.300 33.333 3.17 0.00 0.00 2.17
4286 6985 8.243961 ACAGCTCAACTCACTATATGTAGATT 57.756 34.615 3.17 0.00 0.00 2.40
4287 6986 7.831691 ACAGCTCAACTCACTATATGTAGAT 57.168 36.000 3.17 0.00 0.00 1.98
4288 6987 7.646548 AACAGCTCAACTCACTATATGTAGA 57.353 36.000 3.17 0.00 0.00 2.59
4289 6988 7.976175 TGAAACAGCTCAACTCACTATATGTAG 59.024 37.037 0.00 0.00 0.00 2.74
4290 6989 7.836842 TGAAACAGCTCAACTCACTATATGTA 58.163 34.615 0.00 0.00 0.00 2.29
4317 7016 8.833493 CAAGACTGAAATACATGAGAATGCATA 58.167 33.333 0.00 0.00 0.00 3.14
4396 7110 6.670464 TGACAACTAATATAGGACACAGGGAA 59.330 38.462 0.00 0.00 0.00 3.97
4402 7116 8.870879 GTTTGAGTGACAACTAATATAGGACAC 58.129 37.037 0.00 0.00 36.52 3.67
4408 7122 8.255206 ACATCCGTTTGAGTGACAACTAATATA 58.745 33.333 0.00 0.00 36.52 0.86
4454 7209 5.423886 TGTCGCTGAAATGGATGTATGTAA 58.576 37.500 0.00 0.00 0.00 2.41
4457 7212 4.880886 TTGTCGCTGAAATGGATGTATG 57.119 40.909 0.00 0.00 0.00 2.39
4492 7269 5.855045 AGTTGAGTAAACAAGTACTCCCTG 58.145 41.667 9.30 0.00 46.39 4.45
4622 7399 3.882888 CTGAGTTAGCAACCAAGGTTTCA 59.117 43.478 0.79 2.02 36.00 2.69
4668 7445 4.220382 TGGGTCAAAATGGAATGCTTACAG 59.780 41.667 0.00 0.00 0.00 2.74
4738 7515 1.339291 CCGGACGGAGGGAGTATTTAC 59.661 57.143 4.40 0.00 37.50 2.01
4781 7558 6.634889 ATTTATGGTTAAACTTTGGCCCAT 57.365 33.333 0.00 0.00 36.66 4.00
4966 7754 7.159372 GCTATTAATTTCTATTCCCTCCGTCA 58.841 38.462 0.00 0.00 0.00 4.35
5019 7807 9.605275 CTCCTGAAATCTACATTCAAGTATTCA 57.395 33.333 0.00 0.00 36.43 2.57
5020 7808 9.823647 TCTCCTGAAATCTACATTCAAGTATTC 57.176 33.333 0.00 0.00 36.43 1.75
5022 7810 9.606631 GTTCTCCTGAAATCTACATTCAAGTAT 57.393 33.333 0.00 0.00 36.43 2.12
5023 7811 8.041323 GGTTCTCCTGAAATCTACATTCAAGTA 58.959 37.037 0.00 0.00 36.43 2.24
5024 7812 6.881602 GGTTCTCCTGAAATCTACATTCAAGT 59.118 38.462 0.00 0.00 36.43 3.16
5025 7813 6.036517 CGGTTCTCCTGAAATCTACATTCAAG 59.963 42.308 0.00 0.00 36.43 3.02
5081 7886 5.949354 CCAAATCCTGGTAGGTGAATTAACA 59.051 40.000 0.00 0.00 40.78 2.41
5174 7979 9.471084 GCTTAGTGCTTTTTAATTTTTCTGGTA 57.529 29.630 0.00 0.00 38.95 3.25
5175 7980 7.169140 CGCTTAGTGCTTTTTAATTTTTCTGGT 59.831 33.333 0.00 0.00 40.11 4.00
5194 8158 3.887621 TTGGAATAGACAGCGCTTAGT 57.112 42.857 7.50 2.68 0.00 2.24
5200 8164 2.032550 CCTTGCATTGGAATAGACAGCG 59.967 50.000 0.35 0.00 0.00 5.18
5203 8167 2.754552 GCACCTTGCATTGGAATAGACA 59.245 45.455 12.48 0.00 44.26 3.41
5229 8193 1.024579 CCGGATGTTTAGCACCGCTT 61.025 55.000 0.00 0.00 40.44 4.68
5234 8198 1.066430 TCCAGTCCGGATGTTTAGCAC 60.066 52.381 7.81 0.00 39.64 4.40
5271 8235 0.606673 GCCCTTTTCCTTCACGAGCT 60.607 55.000 0.00 0.00 0.00 4.09
5295 8259 1.007849 CAAAACAAGGAACCGGGCG 60.008 57.895 6.32 0.00 0.00 6.13
5299 8263 0.656205 CGACGCAAAACAAGGAACCG 60.656 55.000 0.00 0.00 0.00 4.44
5302 8266 0.941542 CCTCGACGCAAAACAAGGAA 59.058 50.000 0.00 0.00 0.00 3.36
5369 8333 1.515521 CCGGGCGCCAGGATTTATTC 61.516 60.000 38.92 11.00 0.00 1.75
5392 8356 0.039437 ATCTACAACGCGGGCGATAG 60.039 55.000 20.98 16.32 42.83 2.08
5395 8359 2.202690 CATCTACAACGCGGGCGA 60.203 61.111 20.98 3.09 42.83 5.54
5403 8367 1.138266 TCCGCTAAGGGCATCTACAAC 59.862 52.381 0.00 0.00 41.91 3.32
5407 8371 5.499004 AATAATTCCGCTAAGGGCATCTA 57.501 39.130 0.00 0.00 41.91 1.98
5420 8384 6.795114 GCCATTACATTCACGTAATAATTCCG 59.205 38.462 0.00 0.00 39.50 4.30
5445 8409 8.671028 ACTTTGTAACATTTTATAAGGTAGGCG 58.329 33.333 0.00 0.00 30.10 5.52
5460 8424 8.036575 CCATTCCATCATCAAACTTTGTAACAT 58.963 33.333 1.44 0.00 0.00 2.71
5484 8448 7.720074 AGACTATTATGTCAGTATCGTTCTCCA 59.280 37.037 0.00 0.00 39.27 3.86
5497 8461 9.958180 TTCAATTTCCAGAAGACTATTATGTCA 57.042 29.630 0.00 0.00 39.27 3.58
5538 8502 0.181114 AGCGATTCAGGCCAGCATAA 59.819 50.000 5.01 0.00 0.00 1.90
6019 8989 6.291377 GGACTCCTTTTGCTATGTCATCATA 58.709 40.000 0.00 0.00 35.70 2.15
6282 9270 9.853555 AACGCAATTTGAGAAAATGATAATACA 57.146 25.926 7.16 0.00 0.00 2.29
6616 9605 3.056607 GTGCTGCAGTTGGGTTTATGAAT 60.057 43.478 16.64 0.00 0.00 2.57
6661 9650 2.045524 ACAGATGGCTCACTCATAGGG 58.954 52.381 0.00 0.00 0.00 3.53
6666 9655 4.763073 CTTATTCACAGATGGCTCACTCA 58.237 43.478 0.00 0.00 0.00 3.41
6730 9719 2.669391 CGATGAAGAAAAACCAGGCAGC 60.669 50.000 0.00 0.00 0.00 5.25
6733 9722 2.552315 TGACGATGAAGAAAAACCAGGC 59.448 45.455 0.00 0.00 0.00 4.85
6748 9737 5.419155 TGGAAGATCTTCACTAGTTGACGAT 59.581 40.000 31.29 11.44 44.01 3.73
6751 9740 7.572168 GCTTTTGGAAGATCTTCACTAGTTGAC 60.572 40.741 31.29 14.59 41.20 3.18
6889 9878 0.676184 TCAGCATCTCATCGTAGCCC 59.324 55.000 0.00 0.00 0.00 5.19
7188 10177 2.418976 GCAATAAAGAACAGACCGACCC 59.581 50.000 0.00 0.00 0.00 4.46
7430 10425 5.775701 TCTTAGATATTGGTACAGAGGGAGC 59.224 44.000 0.00 0.00 42.39 4.70
7482 10478 5.876576 ACGTCCAAAATTTAAAACGCTTC 57.123 34.783 15.08 0.00 33.68 3.86
7485 10481 8.438732 AATACTACGTCCAAAATTTAAAACGC 57.561 30.769 15.08 0.00 33.68 4.84
7494 10490 9.106070 GGAACTATGAAATACTACGTCCAAAAT 57.894 33.333 0.00 0.00 0.00 1.82
7495 10491 8.316214 AGGAACTATGAAATACTACGTCCAAAA 58.684 33.333 0.00 0.00 36.02 2.44
7499 10495 8.713737 AAAAGGAACTATGAAATACTACGTCC 57.286 34.615 0.00 0.00 38.49 4.79
7502 10498 9.968743 GTTGAAAAGGAACTATGAAATACTACG 57.031 33.333 0.00 0.00 38.49 3.51
7519 10521 6.072175 TCCATAATTTCTCCACGTTGAAAAGG 60.072 38.462 10.74 10.36 36.06 3.11
7552 10554 6.128688 GCTAACTGCTCAGTAGAAGAACAAAG 60.129 42.308 0.00 0.00 41.58 2.77
7607 10666 4.262164 GCAAGGAGCTTGAATTCTTTTCCA 60.262 41.667 7.05 0.00 43.42 3.53
7626 10685 3.063997 CGGTACAGGAATTTAGCTGCAAG 59.936 47.826 1.02 0.00 0.00 4.01
7641 10700 2.967362 TGCATTCTACCAACGGTACAG 58.033 47.619 0.00 0.00 37.09 2.74
7642 10701 3.266636 CATGCATTCTACCAACGGTACA 58.733 45.455 0.00 0.00 37.09 2.90
7653 10712 4.467082 AGCAATTGGTTTCCATGCATTCTA 59.533 37.500 3.82 0.00 40.71 2.10
7670 10729 9.723601 ACAATTCAATGTTAACCATTAGCAATT 57.276 25.926 2.48 6.13 41.93 2.32
7676 10735 8.338072 ACGGTACAATTCAATGTTAACCATTA 57.662 30.769 2.48 0.00 41.93 1.90
7693 10752 1.957186 GTGCAAGCCGACGGTACAA 60.957 57.895 16.73 0.00 0.00 2.41
7699 10758 4.799473 CATGCGTGCAAGCCGACG 62.799 66.667 22.00 4.87 38.63 5.12
7774 10893 3.947834 AGGCACCAATATTTCGAGGAAAG 59.052 43.478 0.00 0.00 34.92 2.62
7826 10945 2.419851 CCAGCTGCCAACTTTTCCAAAA 60.420 45.455 8.66 0.00 0.00 2.44
7827 10946 1.138661 CCAGCTGCCAACTTTTCCAAA 59.861 47.619 8.66 0.00 0.00 3.28
7831 10950 4.661461 GCCAGCTGCCAACTTTTC 57.339 55.556 8.66 0.00 0.00 2.29
7846 10965 1.176619 ACAAAACAAGGTAGCGGGCC 61.177 55.000 0.00 0.00 0.00 5.80
7847 10966 0.240145 GACAAAACAAGGTAGCGGGC 59.760 55.000 0.00 0.00 0.00 6.13
7850 10969 0.515564 CGGGACAAAACAAGGTAGCG 59.484 55.000 0.00 0.00 0.00 4.26
7859 10978 0.517316 CAGCTAGCACGGGACAAAAC 59.483 55.000 18.83 0.00 0.00 2.43
7919 13200 4.321745 GCTGATGCACACATTTTCTTTACG 59.678 41.667 0.00 0.00 36.35 3.18
7957 13238 6.051717 CACTTCTCTCAGTGGAAGAGAAAAA 58.948 40.000 19.41 4.46 44.75 1.94
7960 13241 3.006323 GCACTTCTCTCAGTGGAAGAGAA 59.994 47.826 18.39 18.39 43.94 2.87
7963 13244 1.620819 GGCACTTCTCTCAGTGGAAGA 59.379 52.381 12.78 3.53 43.94 2.87
7966 13247 0.539669 TCGGCACTTCTCTCAGTGGA 60.540 55.000 3.15 0.00 43.94 4.02
7968 13249 0.108898 CCTCGGCACTTCTCTCAGTG 60.109 60.000 0.00 0.00 46.15 3.66
7969 13250 0.251386 TCCTCGGCACTTCTCTCAGT 60.251 55.000 0.00 0.00 0.00 3.41
7970 13251 1.066908 GATCCTCGGCACTTCTCTCAG 59.933 57.143 0.00 0.00 0.00 3.35
7971 13252 1.107114 GATCCTCGGCACTTCTCTCA 58.893 55.000 0.00 0.00 0.00 3.27
7972 13253 1.107114 TGATCCTCGGCACTTCTCTC 58.893 55.000 0.00 0.00 0.00 3.20
7974 13255 0.526524 CGTGATCCTCGGCACTTCTC 60.527 60.000 0.00 0.00 32.98 2.87
7975 13256 1.251527 ACGTGATCCTCGGCACTTCT 61.252 55.000 11.08 0.00 32.98 2.85
7976 13257 0.389948 AACGTGATCCTCGGCACTTC 60.390 55.000 11.08 0.00 32.98 3.01
7978 13259 0.172803 GTAACGTGATCCTCGGCACT 59.827 55.000 11.08 0.00 32.98 4.40
7979 13260 0.108992 TGTAACGTGATCCTCGGCAC 60.109 55.000 11.08 8.62 0.00 5.01
7980 13261 0.108992 GTGTAACGTGATCCTCGGCA 60.109 55.000 11.08 5.41 0.00 5.69
7984 13265 1.134788 CCCTGGTGTAACGTGATCCTC 60.135 57.143 0.00 0.00 38.12 3.71
8025 13611 2.478894 CACGCAAATTCACCTCTAACGT 59.521 45.455 0.00 0.00 0.00 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.