Multiple sequence alignment - TraesCS4A01G212000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G212000 chr4A 100.000 2543 0 0 1 2543 507560295 507562837 0.000000e+00 4697.0
1 TraesCS4A01G212000 chr4A 99.730 371 1 0 1 371 482879575 482879945 0.000000e+00 680.0
2 TraesCS4A01G212000 chr4A 95.283 212 9 1 1810 2020 507562033 507562244 4.050000e-88 335.0
3 TraesCS4A01G212000 chr4A 95.283 212 9 1 1739 1950 507562104 507562314 4.050000e-88 335.0
4 TraesCS4A01G212000 chr4D 91.869 824 50 10 977 1794 78836308 78835496 0.000000e+00 1134.0
5 TraesCS4A01G212000 chr4D 84.593 688 61 27 1884 2543 78827956 78827286 2.130000e-180 641.0
6 TraesCS4A01G212000 chr4D 88.704 301 20 11 653 941 78836609 78836311 3.110000e-94 355.0
7 TraesCS4A01G212000 chr4D 86.813 273 16 8 1621 1885 78828074 78827814 1.150000e-73 287.0
8 TraesCS4A01G212000 chr4D 82.867 286 33 7 370 647 78837186 78836909 2.530000e-60 243.0
9 TraesCS4A01G212000 chr4D 87.417 151 4 3 1813 1956 78827956 78827814 2.620000e-35 159.0
10 TraesCS4A01G212000 chr4D 92.857 56 4 0 1881 1936 78835551 78835496 5.830000e-12 82.4
11 TraesCS4A01G212000 chr4D 92.857 56 4 0 1810 1865 78835551 78835496 5.830000e-12 82.4
12 TraesCS4A01G212000 chr4B 85.756 1018 66 31 822 1814 110405420 110404457 0.000000e+00 1003.0
13 TraesCS4A01G212000 chr4B 93.557 388 20 5 442 826 110406053 110405668 7.890000e-160 573.0
14 TraesCS4A01G212000 chr4B 89.514 391 21 2 1 371 28164261 28164651 6.370000e-131 477.0
15 TraesCS4A01G212000 chr4B 81.618 408 39 19 1 372 25011240 25011647 3.180000e-79 305.0
16 TraesCS4A01G212000 chr4B 91.549 71 6 0 370 440 110406160 110406090 5.790000e-17 99.0
17 TraesCS4A01G212000 chr4B 89.333 75 8 0 1882 1956 110404531 110404457 7.490000e-16 95.3
18 TraesCS4A01G212000 chr4B 89.333 75 8 0 1811 1885 110404531 110404457 7.490000e-16 95.3
19 TraesCS4A01G212000 chr6A 99.730 371 1 0 1 371 105168221 105167851 0.000000e+00 680.0
20 TraesCS4A01G212000 chr3A 99.462 372 2 0 1 372 63433060 63433431 0.000000e+00 676.0
21 TraesCS4A01G212000 chr2B 88.889 378 34 3 1 371 775419801 775420177 2.310000e-125 459.0
22 TraesCS4A01G212000 chr2B 86.445 391 32 7 1 371 128530937 128530548 2.350000e-110 409.0
23 TraesCS4A01G212000 chr1B 87.980 391 26 7 1 371 189690397 189690008 2.320000e-120 442.0
24 TraesCS4A01G212000 chr2A 95.951 247 10 0 1 247 35908510 35908264 3.940000e-108 401.0
25 TraesCS4A01G212000 chr1A 81.327 407 40 20 1 371 376753403 376752997 5.320000e-77 298.0
26 TraesCS4A01G212000 chr2D 83.398 259 29 11 127 372 453705008 453704751 7.080000e-56 228.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G212000 chr4A 507560295 507562837 2542 False 1789.000000 4697 96.855333 1 2543 3 chr4A.!!$F2 2542
1 TraesCS4A01G212000 chr4D 78835496 78837186 1690 True 379.360000 1134 89.830800 370 1936 5 chr4D.!!$R2 1566
2 TraesCS4A01G212000 chr4D 78827286 78828074 788 True 362.333333 641 86.274333 1621 2543 3 chr4D.!!$R1 922
3 TraesCS4A01G212000 chr4B 110404457 110406160 1703 True 373.120000 1003 89.905600 370 1956 5 chr4B.!!$R1 1586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
218 219 0.032952 TGTTCAGGACGAAGGAACGG 59.967 55.0 0.0 0.0 42.86 4.44 F
346 347 0.036732 TTGTTTGGATCTGCCGCTCT 59.963 50.0 0.0 0.0 40.66 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1263 1860 0.454452 GACGATGAACAAAAGCCGGC 60.454 55.0 21.89 21.89 0.0 6.13 R
2132 2823 0.825010 AACCCTGCCAACAAGCTCAG 60.825 55.0 0.00 0.00 0.0 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.770040 CGGAGGTCACCGCATCCA 61.770 66.667 0.00 0.00 46.20 3.41
27 28 2.187946 GGAGGTCACCGCATCCAG 59.812 66.667 0.00 0.00 0.00 3.86
28 29 2.512515 GAGGTCACCGCATCCAGC 60.513 66.667 0.00 0.00 40.87 4.85
37 38 4.575973 GCATCCAGCGCCAGGGAT 62.576 66.667 17.36 17.36 44.65 3.85
39 40 3.882326 ATCCAGCGCCAGGGATGG 61.882 66.667 21.03 13.85 42.24 3.51
42 43 4.864334 CAGCGCCAGGGATGGGTC 62.864 72.222 2.29 0.00 0.00 4.46
73 74 2.743928 GATGGGATCATCGGCGGC 60.744 66.667 7.21 0.00 40.15 6.53
74 75 4.687215 ATGGGATCATCGGCGGCG 62.687 66.667 27.15 27.15 0.00 6.46
107 108 4.767255 GTCCGTGGGGCAGCAGAG 62.767 72.222 0.00 0.00 0.00 3.35
110 111 3.790437 CGTGGGGCAGCAGAGGAT 61.790 66.667 0.00 0.00 0.00 3.24
111 112 2.191641 GTGGGGCAGCAGAGGATC 59.808 66.667 0.00 0.00 0.00 3.36
158 159 4.162690 GGGAGGCGTGGGTAGCAG 62.163 72.222 0.00 0.00 36.08 4.24
159 160 3.075005 GGAGGCGTGGGTAGCAGA 61.075 66.667 0.00 0.00 36.08 4.26
160 161 2.496817 GAGGCGTGGGTAGCAGAG 59.503 66.667 0.00 0.00 36.08 3.35
161 162 3.077556 AGGCGTGGGTAGCAGAGG 61.078 66.667 0.00 0.00 36.08 3.69
162 163 3.075005 GGCGTGGGTAGCAGAGGA 61.075 66.667 0.00 0.00 36.08 3.71
163 164 2.496817 GCGTGGGTAGCAGAGGAG 59.503 66.667 0.00 0.00 34.19 3.69
164 165 3.082579 GCGTGGGTAGCAGAGGAGG 62.083 68.421 0.00 0.00 34.19 4.30
165 166 1.379977 CGTGGGTAGCAGAGGAGGA 60.380 63.158 0.00 0.00 0.00 3.71
166 167 1.388065 CGTGGGTAGCAGAGGAGGAG 61.388 65.000 0.00 0.00 0.00 3.69
167 168 0.324830 GTGGGTAGCAGAGGAGGAGT 60.325 60.000 0.00 0.00 0.00 3.85
168 169 1.063867 GTGGGTAGCAGAGGAGGAGTA 60.064 57.143 0.00 0.00 0.00 2.59
169 170 1.215673 TGGGTAGCAGAGGAGGAGTAG 59.784 57.143 0.00 0.00 0.00 2.57
170 171 1.324383 GGTAGCAGAGGAGGAGTAGC 58.676 60.000 0.00 0.00 0.00 3.58
171 172 0.948678 GTAGCAGAGGAGGAGTAGCG 59.051 60.000 0.00 0.00 0.00 4.26
172 173 0.837940 TAGCAGAGGAGGAGTAGCGA 59.162 55.000 0.00 0.00 0.00 4.93
173 174 0.033991 AGCAGAGGAGGAGTAGCGAA 60.034 55.000 0.00 0.00 0.00 4.70
174 175 0.383949 GCAGAGGAGGAGTAGCGAAG 59.616 60.000 0.00 0.00 0.00 3.79
175 176 1.028905 CAGAGGAGGAGTAGCGAAGG 58.971 60.000 0.00 0.00 0.00 3.46
176 177 0.626916 AGAGGAGGAGTAGCGAAGGT 59.373 55.000 0.00 0.00 44.89 3.50
177 178 1.026584 GAGGAGGAGTAGCGAAGGTC 58.973 60.000 0.00 0.00 40.68 3.85
178 179 0.748729 AGGAGGAGTAGCGAAGGTCG 60.749 60.000 0.00 0.00 43.89 4.79
179 180 1.031029 GGAGGAGTAGCGAAGGTCGT 61.031 60.000 0.00 0.00 42.81 4.34
180 181 0.099082 GAGGAGTAGCGAAGGTCGTG 59.901 60.000 0.00 0.00 42.81 4.35
181 182 1.139095 GGAGTAGCGAAGGTCGTGG 59.861 63.158 0.00 0.00 42.81 4.94
182 183 1.139095 GAGTAGCGAAGGTCGTGGG 59.861 63.158 0.00 0.00 42.81 4.61
183 184 1.593296 GAGTAGCGAAGGTCGTGGGT 61.593 60.000 0.00 0.00 42.81 4.51
184 185 1.183676 AGTAGCGAAGGTCGTGGGTT 61.184 55.000 0.00 0.00 42.81 4.11
185 186 0.735287 GTAGCGAAGGTCGTGGGTTC 60.735 60.000 0.00 0.00 42.81 3.62
186 187 2.203972 TAGCGAAGGTCGTGGGTTCG 62.204 60.000 0.00 0.00 42.81 3.95
187 188 2.337532 CGAAGGTCGTGGGTTCGT 59.662 61.111 0.00 0.00 38.57 3.85
188 189 2.019951 CGAAGGTCGTGGGTTCGTG 61.020 63.158 0.00 0.00 38.57 4.35
189 190 2.280592 AAGGTCGTGGGTTCGTGC 60.281 61.111 0.00 0.00 0.00 5.34
190 191 4.657824 AGGTCGTGGGTTCGTGCG 62.658 66.667 0.00 0.00 0.00 5.34
198 199 3.284449 GGTTCGTGCGGGCAGTTT 61.284 61.111 0.00 0.00 0.00 2.66
199 200 2.719354 GTTCGTGCGGGCAGTTTT 59.281 55.556 0.00 0.00 0.00 2.43
200 201 1.657181 GTTCGTGCGGGCAGTTTTG 60.657 57.895 0.00 0.00 0.00 2.44
201 202 2.115911 TTCGTGCGGGCAGTTTTGT 61.116 52.632 0.00 0.00 0.00 2.83
202 203 1.658686 TTCGTGCGGGCAGTTTTGTT 61.659 50.000 0.00 0.00 0.00 2.83
203 204 1.657181 CGTGCGGGCAGTTTTGTTC 60.657 57.895 0.00 0.00 0.00 3.18
204 205 1.435515 GTGCGGGCAGTTTTGTTCA 59.564 52.632 0.00 0.00 0.00 3.18
205 206 0.594796 GTGCGGGCAGTTTTGTTCAG 60.595 55.000 0.00 0.00 0.00 3.02
206 207 1.007387 GCGGGCAGTTTTGTTCAGG 60.007 57.895 0.00 0.00 0.00 3.86
207 208 1.452145 GCGGGCAGTTTTGTTCAGGA 61.452 55.000 0.00 0.00 0.00 3.86
208 209 0.310854 CGGGCAGTTTTGTTCAGGAC 59.689 55.000 0.00 0.00 0.00 3.85
209 210 0.310854 GGGCAGTTTTGTTCAGGACG 59.689 55.000 0.00 0.00 0.00 4.79
210 211 1.305201 GGCAGTTTTGTTCAGGACGA 58.695 50.000 0.00 0.00 0.00 4.20
211 212 1.673920 GGCAGTTTTGTTCAGGACGAA 59.326 47.619 0.00 0.00 0.00 3.85
212 213 2.287009 GGCAGTTTTGTTCAGGACGAAG 60.287 50.000 0.00 0.00 33.24 3.79
213 214 2.287009 GCAGTTTTGTTCAGGACGAAGG 60.287 50.000 0.00 0.00 33.24 3.46
214 215 3.202906 CAGTTTTGTTCAGGACGAAGGA 58.797 45.455 0.00 0.00 33.24 3.36
215 216 3.625764 CAGTTTTGTTCAGGACGAAGGAA 59.374 43.478 0.00 0.00 33.24 3.36
216 217 3.626217 AGTTTTGTTCAGGACGAAGGAAC 59.374 43.478 0.00 0.00 40.91 3.62
217 218 1.860676 TTGTTCAGGACGAAGGAACG 58.139 50.000 0.00 0.00 42.86 3.95
218 219 0.032952 TGTTCAGGACGAAGGAACGG 59.967 55.000 0.00 0.00 42.86 4.44
219 220 0.669625 GTTCAGGACGAAGGAACGGG 60.670 60.000 0.00 0.00 37.61 5.28
220 221 1.823169 TTCAGGACGAAGGAACGGGG 61.823 60.000 0.00 0.00 37.61 5.73
221 222 2.118951 AGGACGAAGGAACGGGGA 59.881 61.111 0.00 0.00 37.61 4.81
222 223 1.982938 AGGACGAAGGAACGGGGAG 60.983 63.158 0.00 0.00 37.61 4.30
223 224 2.577593 GACGAAGGAACGGGGAGG 59.422 66.667 0.00 0.00 37.61 4.30
224 225 1.980772 GACGAAGGAACGGGGAGGA 60.981 63.158 0.00 0.00 37.61 3.71
225 226 1.305887 ACGAAGGAACGGGGAGGAT 60.306 57.895 0.00 0.00 37.61 3.24
226 227 0.908180 ACGAAGGAACGGGGAGGATT 60.908 55.000 0.00 0.00 37.61 3.01
227 228 1.117150 CGAAGGAACGGGGAGGATTA 58.883 55.000 0.00 0.00 0.00 1.75
228 229 1.068741 CGAAGGAACGGGGAGGATTAG 59.931 57.143 0.00 0.00 0.00 1.73
229 230 2.117051 GAAGGAACGGGGAGGATTAGT 58.883 52.381 0.00 0.00 0.00 2.24
230 231 1.790818 AGGAACGGGGAGGATTAGTC 58.209 55.000 0.00 0.00 0.00 2.59
231 232 0.388294 GGAACGGGGAGGATTAGTCG 59.612 60.000 0.00 0.00 0.00 4.18
232 233 1.109609 GAACGGGGAGGATTAGTCGT 58.890 55.000 0.00 0.00 0.00 4.34
233 234 0.822164 AACGGGGAGGATTAGTCGTG 59.178 55.000 0.00 0.00 0.00 4.35
234 235 1.067582 CGGGGAGGATTAGTCGTGC 59.932 63.158 0.00 0.00 0.00 5.34
235 236 1.067582 GGGGAGGATTAGTCGTGCG 59.932 63.158 0.00 0.00 32.18 5.34
236 237 1.067582 GGGAGGATTAGTCGTGCGG 59.932 63.158 0.00 0.00 32.18 5.69
237 238 1.067582 GGAGGATTAGTCGTGCGGG 59.932 63.158 0.00 0.00 0.00 6.13
238 239 1.673808 GGAGGATTAGTCGTGCGGGT 61.674 60.000 0.00 0.00 0.00 5.28
239 240 0.248949 GAGGATTAGTCGTGCGGGTC 60.249 60.000 0.00 0.00 0.00 4.46
240 241 1.227176 GGATTAGTCGTGCGGGTCC 60.227 63.158 0.00 0.00 0.00 4.46
241 242 1.673808 GGATTAGTCGTGCGGGTCCT 61.674 60.000 0.00 0.00 0.00 3.85
242 243 0.175073 GATTAGTCGTGCGGGTCCTT 59.825 55.000 0.00 0.00 0.00 3.36
243 244 0.611714 ATTAGTCGTGCGGGTCCTTT 59.388 50.000 0.00 0.00 0.00 3.11
244 245 0.393820 TTAGTCGTGCGGGTCCTTTT 59.606 50.000 0.00 0.00 0.00 2.27
245 246 0.320073 TAGTCGTGCGGGTCCTTTTG 60.320 55.000 0.00 0.00 0.00 2.44
246 247 2.975799 TCGTGCGGGTCCTTTTGC 60.976 61.111 0.00 0.00 0.00 3.68
247 248 2.978010 CGTGCGGGTCCTTTTGCT 60.978 61.111 0.00 0.00 0.00 3.91
248 249 2.551912 CGTGCGGGTCCTTTTGCTT 61.552 57.895 0.00 0.00 0.00 3.91
249 250 1.231958 CGTGCGGGTCCTTTTGCTTA 61.232 55.000 0.00 0.00 0.00 3.09
250 251 0.240145 GTGCGGGTCCTTTTGCTTAC 59.760 55.000 0.00 0.00 0.00 2.34
251 252 0.109723 TGCGGGTCCTTTTGCTTACT 59.890 50.000 0.00 0.00 0.00 2.24
252 253 0.521735 GCGGGTCCTTTTGCTTACTG 59.478 55.000 0.00 0.00 0.00 2.74
253 254 0.521735 CGGGTCCTTTTGCTTACTGC 59.478 55.000 0.00 0.00 43.25 4.40
254 255 0.521735 GGGTCCTTTTGCTTACTGCG 59.478 55.000 0.00 0.00 46.63 5.18
255 256 1.235724 GGTCCTTTTGCTTACTGCGT 58.764 50.000 0.00 0.00 46.63 5.24
256 257 1.069227 GGTCCTTTTGCTTACTGCGTG 60.069 52.381 0.00 0.00 46.63 5.34
257 258 1.871039 GTCCTTTTGCTTACTGCGTGA 59.129 47.619 0.00 0.00 46.63 4.35
258 259 2.484264 GTCCTTTTGCTTACTGCGTGAT 59.516 45.455 0.00 0.00 46.63 3.06
259 260 3.058224 GTCCTTTTGCTTACTGCGTGATT 60.058 43.478 0.00 0.00 46.63 2.57
260 261 4.153475 GTCCTTTTGCTTACTGCGTGATTA 59.847 41.667 0.00 0.00 46.63 1.75
261 262 4.391830 TCCTTTTGCTTACTGCGTGATTAG 59.608 41.667 0.00 0.00 46.63 1.73
262 263 4.154195 CCTTTTGCTTACTGCGTGATTAGT 59.846 41.667 0.00 0.00 46.63 2.24
263 264 4.661993 TTTGCTTACTGCGTGATTAGTG 57.338 40.909 0.00 0.00 46.63 2.74
264 265 2.616960 TGCTTACTGCGTGATTAGTGG 58.383 47.619 0.00 0.00 46.63 4.00
265 266 1.327764 GCTTACTGCGTGATTAGTGGC 59.672 52.381 0.00 0.00 0.00 5.01
266 267 2.893637 CTTACTGCGTGATTAGTGGCT 58.106 47.619 0.00 0.00 0.00 4.75
267 268 3.262420 CTTACTGCGTGATTAGTGGCTT 58.738 45.455 0.00 0.00 0.00 4.35
268 269 1.442769 ACTGCGTGATTAGTGGCTTG 58.557 50.000 0.00 0.00 0.00 4.01
269 270 0.097674 CTGCGTGATTAGTGGCTTGC 59.902 55.000 0.00 0.00 0.00 4.01
270 271 0.321564 TGCGTGATTAGTGGCTTGCT 60.322 50.000 0.00 0.00 0.00 3.91
271 272 1.066502 TGCGTGATTAGTGGCTTGCTA 60.067 47.619 0.00 0.00 0.00 3.49
272 273 1.594862 GCGTGATTAGTGGCTTGCTAG 59.405 52.381 0.00 0.00 0.00 3.42
273 274 2.893637 CGTGATTAGTGGCTTGCTAGT 58.106 47.619 0.00 0.00 0.00 2.57
274 275 3.737047 GCGTGATTAGTGGCTTGCTAGTA 60.737 47.826 0.00 0.00 0.00 1.82
275 276 4.621991 CGTGATTAGTGGCTTGCTAGTAT 58.378 43.478 0.00 0.00 0.00 2.12
276 277 5.050490 CGTGATTAGTGGCTTGCTAGTATT 58.950 41.667 0.00 0.00 0.00 1.89
277 278 6.213677 CGTGATTAGTGGCTTGCTAGTATTA 58.786 40.000 0.00 0.00 0.00 0.98
278 279 6.700081 CGTGATTAGTGGCTTGCTAGTATTAA 59.300 38.462 0.00 0.00 0.00 1.40
279 280 7.223971 CGTGATTAGTGGCTTGCTAGTATTAAA 59.776 37.037 0.00 0.00 0.00 1.52
280 281 8.336080 GTGATTAGTGGCTTGCTAGTATTAAAC 58.664 37.037 0.00 0.00 0.00 2.01
281 282 8.044309 TGATTAGTGGCTTGCTAGTATTAAACA 58.956 33.333 0.00 0.00 0.00 2.83
282 283 8.980481 ATTAGTGGCTTGCTAGTATTAAACAT 57.020 30.769 0.00 0.00 0.00 2.71
284 285 9.893634 TTAGTGGCTTGCTAGTATTAAACATAA 57.106 29.630 0.00 0.00 0.00 1.90
285 286 8.801882 AGTGGCTTGCTAGTATTAAACATAAA 57.198 30.769 0.00 0.00 0.00 1.40
286 287 9.238368 AGTGGCTTGCTAGTATTAAACATAAAA 57.762 29.630 0.00 0.00 0.00 1.52
287 288 9.849166 GTGGCTTGCTAGTATTAAACATAAAAA 57.151 29.630 0.00 0.00 0.00 1.94
309 310 6.980051 AAAACTACGGACCATTAGATGTTC 57.020 37.500 4.46 0.00 0.00 3.18
310 311 5.670792 AACTACGGACCATTAGATGTTCA 57.329 39.130 4.46 0.00 0.00 3.18
311 312 5.871396 ACTACGGACCATTAGATGTTCAT 57.129 39.130 4.46 0.00 0.00 2.57
312 313 5.601662 ACTACGGACCATTAGATGTTCATG 58.398 41.667 4.46 0.00 0.00 3.07
313 314 4.753516 ACGGACCATTAGATGTTCATGA 57.246 40.909 0.00 0.00 0.00 3.07
314 315 5.296151 ACGGACCATTAGATGTTCATGAT 57.704 39.130 0.00 0.00 0.00 2.45
315 316 5.059161 ACGGACCATTAGATGTTCATGATG 58.941 41.667 0.00 0.00 0.00 3.07
316 317 4.453478 CGGACCATTAGATGTTCATGATGG 59.547 45.833 0.00 0.69 39.84 3.51
317 318 5.624159 GGACCATTAGATGTTCATGATGGA 58.376 41.667 13.34 0.00 37.91 3.41
318 319 6.243900 GGACCATTAGATGTTCATGATGGAT 58.756 40.000 13.34 0.00 37.91 3.41
319 320 6.150641 GGACCATTAGATGTTCATGATGGATG 59.849 42.308 13.34 4.44 37.91 3.51
320 321 6.008331 ACCATTAGATGTTCATGATGGATGG 58.992 40.000 13.34 13.13 37.91 3.51
321 322 6.008331 CCATTAGATGTTCATGATGGATGGT 58.992 40.000 0.00 0.00 36.92 3.55
322 323 6.492429 CCATTAGATGTTCATGATGGATGGTT 59.508 38.462 0.00 0.00 36.92 3.67
323 324 6.947644 TTAGATGTTCATGATGGATGGTTG 57.052 37.500 0.00 0.00 32.26 3.77
324 325 4.863548 AGATGTTCATGATGGATGGTTGT 58.136 39.130 0.00 0.00 32.26 3.32
325 326 4.643334 AGATGTTCATGATGGATGGTTGTG 59.357 41.667 0.00 0.00 32.26 3.33
326 327 4.031636 TGTTCATGATGGATGGTTGTGA 57.968 40.909 0.00 0.00 32.26 3.58
327 328 4.602107 TGTTCATGATGGATGGTTGTGAT 58.398 39.130 0.00 0.00 32.26 3.06
328 329 5.018149 TGTTCATGATGGATGGTTGTGATT 58.982 37.500 0.00 0.00 32.26 2.57
329 330 5.105675 TGTTCATGATGGATGGTTGTGATTG 60.106 40.000 0.00 0.00 32.26 2.67
330 331 4.602107 TCATGATGGATGGTTGTGATTGT 58.398 39.130 0.00 0.00 32.26 2.71
331 332 5.018149 TCATGATGGATGGTTGTGATTGTT 58.982 37.500 0.00 0.00 32.26 2.83
332 333 5.481122 TCATGATGGATGGTTGTGATTGTTT 59.519 36.000 0.00 0.00 32.26 2.83
333 334 5.136816 TGATGGATGGTTGTGATTGTTTG 57.863 39.130 0.00 0.00 0.00 2.93
334 335 4.021280 TGATGGATGGTTGTGATTGTTTGG 60.021 41.667 0.00 0.00 0.00 3.28
335 336 3.570540 TGGATGGTTGTGATTGTTTGGA 58.429 40.909 0.00 0.00 0.00 3.53
336 337 4.158786 TGGATGGTTGTGATTGTTTGGAT 58.841 39.130 0.00 0.00 0.00 3.41
337 338 4.220382 TGGATGGTTGTGATTGTTTGGATC 59.780 41.667 0.00 0.00 0.00 3.36
338 339 4.463891 GGATGGTTGTGATTGTTTGGATCT 59.536 41.667 0.00 0.00 0.00 2.75
339 340 4.852134 TGGTTGTGATTGTTTGGATCTG 57.148 40.909 0.00 0.00 0.00 2.90
340 341 3.005684 TGGTTGTGATTGTTTGGATCTGC 59.994 43.478 0.00 0.00 0.00 4.26
341 342 3.578688 GTTGTGATTGTTTGGATCTGCC 58.421 45.455 0.00 0.00 37.10 4.85
342 343 1.811965 TGTGATTGTTTGGATCTGCCG 59.188 47.619 0.00 0.00 40.66 5.69
343 344 0.810648 TGATTGTTTGGATCTGCCGC 59.189 50.000 0.00 0.00 40.66 6.53
344 345 1.098050 GATTGTTTGGATCTGCCGCT 58.902 50.000 0.00 0.00 40.66 5.52
345 346 1.064654 GATTGTTTGGATCTGCCGCTC 59.935 52.381 0.00 0.00 40.66 5.03
346 347 0.036732 TTGTTTGGATCTGCCGCTCT 59.963 50.000 0.00 0.00 40.66 4.09
347 348 0.391661 TGTTTGGATCTGCCGCTCTC 60.392 55.000 0.00 0.00 40.66 3.20
348 349 0.107945 GTTTGGATCTGCCGCTCTCT 60.108 55.000 0.00 0.00 40.66 3.10
349 350 0.615331 TTTGGATCTGCCGCTCTCTT 59.385 50.000 0.00 0.00 40.66 2.85
350 351 0.176680 TTGGATCTGCCGCTCTCTTC 59.823 55.000 0.00 0.00 40.66 2.87
351 352 1.068921 GGATCTGCCGCTCTCTTCC 59.931 63.158 0.00 0.00 0.00 3.46
352 353 1.398958 GGATCTGCCGCTCTCTTCCT 61.399 60.000 0.00 0.00 0.00 3.36
353 354 0.463620 GATCTGCCGCTCTCTTCCTT 59.536 55.000 0.00 0.00 0.00 3.36
354 355 0.908198 ATCTGCCGCTCTCTTCCTTT 59.092 50.000 0.00 0.00 0.00 3.11
355 356 0.687354 TCTGCCGCTCTCTTCCTTTT 59.313 50.000 0.00 0.00 0.00 2.27
356 357 1.899814 TCTGCCGCTCTCTTCCTTTTA 59.100 47.619 0.00 0.00 0.00 1.52
357 358 2.501723 TCTGCCGCTCTCTTCCTTTTAT 59.498 45.455 0.00 0.00 0.00 1.40
358 359 3.704566 TCTGCCGCTCTCTTCCTTTTATA 59.295 43.478 0.00 0.00 0.00 0.98
359 360 4.054671 CTGCCGCTCTCTTCCTTTTATAG 58.945 47.826 0.00 0.00 0.00 1.31
360 361 3.451178 TGCCGCTCTCTTCCTTTTATAGT 59.549 43.478 0.00 0.00 0.00 2.12
361 362 3.804873 GCCGCTCTCTTCCTTTTATAGTG 59.195 47.826 0.00 0.00 0.00 2.74
362 363 4.372656 CCGCTCTCTTCCTTTTATAGTGG 58.627 47.826 0.00 0.00 0.00 4.00
363 364 4.141914 CCGCTCTCTTCCTTTTATAGTGGT 60.142 45.833 0.00 0.00 0.00 4.16
364 365 5.068723 CCGCTCTCTTCCTTTTATAGTGGTA 59.931 44.000 0.00 0.00 0.00 3.25
365 366 6.210078 CGCTCTCTTCCTTTTATAGTGGTAG 58.790 44.000 0.00 0.00 0.00 3.18
366 367 6.183360 CGCTCTCTTCCTTTTATAGTGGTAGT 60.183 42.308 0.00 0.00 0.00 2.73
367 368 7.013083 CGCTCTCTTCCTTTTATAGTGGTAGTA 59.987 40.741 0.00 0.00 0.00 1.82
368 369 8.354426 GCTCTCTTCCTTTTATAGTGGTAGTAG 58.646 40.741 0.00 0.00 0.00 2.57
378 379 9.519191 TTTTATAGTGGTAGTAGATGCGGTATA 57.481 33.333 0.00 0.00 0.00 1.47
427 428 9.016623 GTACGTATATATGCAGCGAAAATATCA 57.983 33.333 0.00 0.00 0.00 2.15
428 429 8.648557 ACGTATATATGCAGCGAAAATATCAT 57.351 30.769 1.65 0.00 0.00 2.45
430 431 7.528516 CGTATATATGCAGCGAAAATATCATGC 59.471 37.037 1.60 0.00 39.61 4.06
440 441 4.316513 CGAAAATATCATGCGAAATCAGCG 59.683 41.667 0.00 0.00 37.44 5.18
551 591 1.372872 CAGGATCACACGTCACGCA 60.373 57.895 0.00 0.00 0.00 5.24
713 1048 1.593209 GTTTCTCCCGCGTGTCACA 60.593 57.895 4.92 0.00 0.00 3.58
714 1049 0.949105 GTTTCTCCCGCGTGTCACAT 60.949 55.000 4.92 0.00 0.00 3.21
1113 1710 3.849951 CACCGGCACCGAGGCTAT 61.850 66.667 11.42 0.00 42.83 2.97
1254 1851 2.352651 CGAATCTTCACCGAGGTACGTA 59.647 50.000 0.00 0.00 40.78 3.57
1261 1858 5.928839 TCTTCACCGAGGTACGTATATAGAC 59.071 44.000 0.00 0.00 40.78 2.59
1272 1869 2.608752 CGTATATAGACGGCCGGCTTTT 60.609 50.000 42.91 29.04 39.19 2.27
1298 1908 2.517638 TCGATCGGCCGGCTTCTA 60.518 61.111 28.56 10.35 0.00 2.10
1303 1913 0.827925 ATCGGCCGGCTTCTATCTCA 60.828 55.000 28.56 0.12 0.00 3.27
1304 1914 1.040893 TCGGCCGGCTTCTATCTCAA 61.041 55.000 28.56 0.00 0.00 3.02
1448 2069 2.161808 ACGAGGACTACGACATGTTCAG 59.838 50.000 0.00 0.04 34.70 3.02
1481 2102 2.429478 TCTTGACGATGACGGTGTCTA 58.571 47.619 0.00 0.00 44.46 2.59
1650 2273 7.672660 TGATAGAAGTGGTAGTTACTTTCTCCA 59.327 37.037 0.21 0.00 38.42 3.86
1667 2290 4.326826 TCTCCACATTCGAGAAAGCATTT 58.673 39.130 0.00 0.00 43.98 2.32
1670 2293 5.460646 TCCACATTCGAGAAAGCATTTTTC 58.539 37.500 0.00 0.00 39.27 2.29
1676 2299 7.173218 ACATTCGAGAAAGCATTTTTCTACAGA 59.827 33.333 2.42 1.48 39.27 3.41
1692 2315 2.086869 ACAGATTCGGAAAGGCATGTG 58.913 47.619 0.00 0.00 0.00 3.21
1744 2435 3.307242 AGACAGCGCGAATTTCTGAATAC 59.693 43.478 12.10 2.61 0.00 1.89
1811 2502 9.494055 CTACTCCTATTTATAGATGGGGAATGA 57.506 37.037 5.90 0.00 32.05 2.57
1812 2503 8.757307 ACTCCTATTTATAGATGGGGAATGAA 57.243 34.615 5.90 0.00 32.05 2.57
1813 2504 9.356649 ACTCCTATTTATAGATGGGGAATGAAT 57.643 33.333 5.90 0.00 32.05 2.57
1828 2519 9.578576 TGGGGAATGAATAGAGATTTTTATGAG 57.421 33.333 0.00 0.00 0.00 2.90
1829 2520 9.799106 GGGGAATGAATAGAGATTTTTATGAGA 57.201 33.333 0.00 0.00 0.00 3.27
2017 2708 9.911788 ATGTAAATGCTCCTATTTATAGATGGG 57.088 33.333 0.00 0.00 35.61 4.00
2018 2709 9.111519 TGTAAATGCTCCTATTTATAGATGGGA 57.888 33.333 7.94 7.94 35.61 4.37
2019 2710 9.959721 GTAAATGCTCCTATTTATAGATGGGAA 57.040 33.333 9.30 0.00 36.40 3.97
2021 2712 7.821134 ATGCTCCTATTTATAGATGGGAAGT 57.179 36.000 9.30 0.00 36.40 3.01
2056 2747 5.011533 CCATCAGGTTCCCAGAAGTATAGAG 59.988 48.000 0.00 0.00 0.00 2.43
2070 2761 8.364142 CAGAAGTATAGAGTTGATCCTAAAGGG 58.636 40.741 0.00 0.00 35.41 3.95
2071 2762 6.673839 AGTATAGAGTTGATCCTAAAGGGC 57.326 41.667 0.00 0.00 35.41 5.19
2076 2767 5.645201 AGAGTTGATCCTAAAGGGCTTTTT 58.355 37.500 0.00 0.00 34.23 1.94
2087 2778 6.368791 CCTAAAGGGCTTTTTAGACATTTTGC 59.631 38.462 17.63 0.00 41.17 3.68
2106 2797 5.991328 TTGCTCTACAAGTCTCAAAACAG 57.009 39.130 0.00 0.00 33.24 3.16
2117 2808 7.556275 ACAAGTCTCAAAACAGGATAAGTTTGA 59.444 33.333 0.00 0.00 39.02 2.69
2141 2832 7.609146 TGATGTAAAATCAGATTCTGAGCTTGT 59.391 33.333 20.35 9.58 44.08 3.16
2146 2837 2.156917 CAGATTCTGAGCTTGTTGGCA 58.843 47.619 8.00 0.00 32.44 4.92
2156 2847 1.110442 CTTGTTGGCAGGGTTTGACA 58.890 50.000 0.00 0.00 45.27 3.58
2162 2853 3.517296 TGGCAGGGTTTGACAGATAAA 57.483 42.857 0.00 0.00 40.88 1.40
2163 2854 4.046286 TGGCAGGGTTTGACAGATAAAT 57.954 40.909 0.00 0.00 40.88 1.40
2164 2855 5.186256 TGGCAGGGTTTGACAGATAAATA 57.814 39.130 0.00 0.00 40.88 1.40
2165 2856 5.192927 TGGCAGGGTTTGACAGATAAATAG 58.807 41.667 0.00 0.00 40.88 1.73
2166 2857 4.580580 GGCAGGGTTTGACAGATAAATAGG 59.419 45.833 0.00 0.00 33.76 2.57
2190 2902 9.702494 AGGAAGAAATAGCAAAAAGAAAATCAG 57.298 29.630 0.00 0.00 0.00 2.90
2191 2903 9.696917 GGAAGAAATAGCAAAAAGAAAATCAGA 57.303 29.630 0.00 0.00 0.00 3.27
2231 2943 4.836125 AATCGTGACAACAAAGATGCTT 57.164 36.364 0.00 0.00 0.00 3.91
2237 2949 4.037446 GTGACAACAAAGATGCTTTGGGTA 59.963 41.667 20.19 7.78 33.92 3.69
2241 2953 5.539955 ACAACAAAGATGCTTTGGGTATTCT 59.460 36.000 20.19 0.00 33.92 2.40
2250 2962 5.027460 TGCTTTGGGTATTCTAGGTGAGTA 58.973 41.667 0.00 0.00 0.00 2.59
2251 2963 5.486063 TGCTTTGGGTATTCTAGGTGAGTAA 59.514 40.000 0.00 0.00 0.00 2.24
2252 2964 6.049790 GCTTTGGGTATTCTAGGTGAGTAAG 58.950 44.000 0.00 0.00 0.00 2.34
2253 2965 6.351966 GCTTTGGGTATTCTAGGTGAGTAAGT 60.352 42.308 0.00 0.00 0.00 2.24
2258 2971 7.881232 TGGGTATTCTAGGTGAGTAAGTTTTTG 59.119 37.037 0.00 0.00 0.00 2.44
2259 2972 7.881751 GGGTATTCTAGGTGAGTAAGTTTTTGT 59.118 37.037 0.00 0.00 0.00 2.83
2264 2977 5.479716 AGGTGAGTAAGTTTTTGTGTTCG 57.520 39.130 0.00 0.00 0.00 3.95
2274 2987 7.924103 AAGTTTTTGTGTTCGAATAACATCC 57.076 32.000 14.94 6.20 32.23 3.51
2275 2988 6.140110 AGTTTTTGTGTTCGAATAACATCCG 58.860 36.000 14.94 0.00 32.23 4.18
2278 2991 4.443913 TGTGTTCGAATAACATCCGAGA 57.556 40.909 11.36 0.00 33.66 4.04
2284 2997 3.053455 CGAATAACATCCGAGAAGCTCC 58.947 50.000 0.00 0.00 0.00 4.70
2350 3063 4.627058 TGCTACAAACTCTTCGAATGTCA 58.373 39.130 4.69 0.00 0.00 3.58
2359 3072 5.810525 ACTCTTCGAATGTCAAAACACAAG 58.189 37.500 0.00 0.00 38.48 3.16
2361 3074 6.093495 ACTCTTCGAATGTCAAAACACAAGAA 59.907 34.615 0.00 0.00 38.48 2.52
2363 3076 7.479980 TCTTCGAATGTCAAAACACAAGAAAT 58.520 30.769 0.00 0.00 38.48 2.17
2364 3077 7.973388 TCTTCGAATGTCAAAACACAAGAAATT 59.027 29.630 0.00 0.00 38.48 1.82
2378 3091 5.853282 CACAAGAAATTTTTCTCGCACCTAG 59.147 40.000 6.05 0.00 46.22 3.02
2381 3094 3.831715 AATTTTTCTCGCACCTAGCAC 57.168 42.857 0.00 0.00 46.13 4.40
2418 3133 7.466590 CGGTTGCCACAAAATTTTAGATGTTTT 60.467 33.333 2.44 0.00 0.00 2.43
2469 3184 7.523293 TTACTGTTCATCAATCAAACATGGT 57.477 32.000 0.00 0.00 32.85 3.55
2472 3187 6.040729 ACTGTTCATCAATCAAACATGGTCAA 59.959 34.615 0.00 0.00 32.85 3.18
2473 3188 6.215121 TGTTCATCAATCAAACATGGTCAAC 58.785 36.000 0.00 0.00 0.00 3.18
2474 3189 6.183360 TGTTCATCAATCAAACATGGTCAACA 60.183 34.615 0.00 0.00 0.00 3.33
2498 3213 3.412386 GTCAAACCCACTCTACATGCTT 58.588 45.455 0.00 0.00 0.00 3.91
2515 3230 7.713764 ACATGCTTAAAATCTGGTTTTGAAC 57.286 32.000 8.84 0.00 40.17 3.18
2516 3231 7.500141 ACATGCTTAAAATCTGGTTTTGAACT 58.500 30.769 8.84 0.00 40.17 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.135153 CGGTGACCTCCGGCAGAG 62.135 72.222 0.00 0.00 45.88 3.35
10 11 2.187946 CTGGATGCGGTGACCTCC 59.812 66.667 0.00 0.04 0.00 4.30
11 12 2.512515 GCTGGATGCGGTGACCTC 60.513 66.667 0.00 0.00 0.00 3.85
20 21 4.575973 ATCCCTGGCGCTGGATGC 62.576 66.667 20.63 0.00 39.89 3.91
22 23 3.882326 CCATCCCTGGCGCTGGAT 61.882 66.667 18.81 17.97 42.12 3.41
25 26 4.864334 GACCCATCCCTGGCGCTG 62.864 72.222 7.64 0.00 41.64 5.18
51 52 1.735386 GCCGATGATCCCATCTGATG 58.265 55.000 10.71 10.71 45.37 3.07
52 53 0.248565 CGCCGATGATCCCATCTGAT 59.751 55.000 0.00 0.00 45.37 2.90
53 54 1.667722 CGCCGATGATCCCATCTGA 59.332 57.895 0.00 0.00 45.37 3.27
54 55 1.375140 CCGCCGATGATCCCATCTG 60.375 63.158 0.00 0.00 45.37 2.90
55 56 3.063526 CCGCCGATGATCCCATCT 58.936 61.111 0.00 0.00 45.37 2.90
56 57 2.743928 GCCGCCGATGATCCCATC 60.744 66.667 0.00 0.00 44.38 3.51
57 58 4.687215 CGCCGCCGATGATCCCAT 62.687 66.667 0.00 0.00 36.29 4.00
90 91 4.767255 CTCTGCTGCCCCACGGAC 62.767 72.222 0.00 0.00 0.00 4.79
93 94 3.746949 GATCCTCTGCTGCCCCACG 62.747 68.421 0.00 0.00 0.00 4.94
94 95 2.191641 GATCCTCTGCTGCCCCAC 59.808 66.667 0.00 0.00 0.00 4.61
95 96 2.041762 AGATCCTCTGCTGCCCCA 59.958 61.111 0.00 0.00 0.00 4.96
96 97 2.509916 CAGATCCTCTGCTGCCCC 59.490 66.667 0.00 0.00 37.72 5.80
103 104 3.136750 CTCCCCGCAGATCCTCTG 58.863 66.667 0.00 0.00 46.90 3.35
104 105 2.841988 GCTCCCCGCAGATCCTCT 60.842 66.667 0.00 0.00 38.92 3.69
105 106 4.292178 CGCTCCCCGCAGATCCTC 62.292 72.222 0.00 0.00 39.08 3.71
133 134 4.899239 CACGCCTCCCGCAGATCC 62.899 72.222 0.00 0.00 41.76 3.36
134 135 4.899239 CCACGCCTCCCGCAGATC 62.899 72.222 0.00 0.00 41.76 2.75
141 142 4.162690 CTGCTACCCACGCCTCCC 62.163 72.222 0.00 0.00 0.00 4.30
142 143 3.075005 TCTGCTACCCACGCCTCC 61.075 66.667 0.00 0.00 0.00 4.30
143 144 2.496817 CTCTGCTACCCACGCCTC 59.503 66.667 0.00 0.00 0.00 4.70
144 145 3.077556 CCTCTGCTACCCACGCCT 61.078 66.667 0.00 0.00 0.00 5.52
145 146 3.075005 TCCTCTGCTACCCACGCC 61.075 66.667 0.00 0.00 0.00 5.68
146 147 2.496817 CTCCTCTGCTACCCACGC 59.503 66.667 0.00 0.00 0.00 5.34
147 148 1.379977 TCCTCCTCTGCTACCCACG 60.380 63.158 0.00 0.00 0.00 4.94
148 149 0.324830 ACTCCTCCTCTGCTACCCAC 60.325 60.000 0.00 0.00 0.00 4.61
149 150 1.215673 CTACTCCTCCTCTGCTACCCA 59.784 57.143 0.00 0.00 0.00 4.51
150 151 1.989706 CTACTCCTCCTCTGCTACCC 58.010 60.000 0.00 0.00 0.00 3.69
151 152 1.324383 GCTACTCCTCCTCTGCTACC 58.676 60.000 0.00 0.00 0.00 3.18
152 153 0.948678 CGCTACTCCTCCTCTGCTAC 59.051 60.000 0.00 0.00 0.00 3.58
153 154 0.837940 TCGCTACTCCTCCTCTGCTA 59.162 55.000 0.00 0.00 0.00 3.49
154 155 0.033991 TTCGCTACTCCTCCTCTGCT 60.034 55.000 0.00 0.00 0.00 4.24
155 156 0.383949 CTTCGCTACTCCTCCTCTGC 59.616 60.000 0.00 0.00 0.00 4.26
156 157 1.028905 CCTTCGCTACTCCTCCTCTG 58.971 60.000 0.00 0.00 0.00 3.35
157 158 0.626916 ACCTTCGCTACTCCTCCTCT 59.373 55.000 0.00 0.00 0.00 3.69
158 159 1.026584 GACCTTCGCTACTCCTCCTC 58.973 60.000 0.00 0.00 0.00 3.71
159 160 0.748729 CGACCTTCGCTACTCCTCCT 60.749 60.000 0.00 0.00 31.14 3.69
160 161 1.031029 ACGACCTTCGCTACTCCTCC 61.031 60.000 0.00 0.00 45.12 4.30
161 162 0.099082 CACGACCTTCGCTACTCCTC 59.901 60.000 0.00 0.00 45.12 3.71
162 163 1.313812 CCACGACCTTCGCTACTCCT 61.314 60.000 0.00 0.00 45.12 3.69
163 164 1.139095 CCACGACCTTCGCTACTCC 59.861 63.158 0.00 0.00 45.12 3.85
164 165 1.139095 CCCACGACCTTCGCTACTC 59.861 63.158 0.00 0.00 45.12 2.59
165 166 1.183676 AACCCACGACCTTCGCTACT 61.184 55.000 0.00 0.00 45.12 2.57
166 167 0.735287 GAACCCACGACCTTCGCTAC 60.735 60.000 0.00 0.00 45.12 3.58
167 168 1.588082 GAACCCACGACCTTCGCTA 59.412 57.895 0.00 0.00 45.12 4.26
168 169 2.342648 GAACCCACGACCTTCGCT 59.657 61.111 0.00 0.00 45.12 4.93
169 170 3.110178 CGAACCCACGACCTTCGC 61.110 66.667 0.00 0.00 45.12 4.70
170 171 2.019951 CACGAACCCACGACCTTCG 61.020 63.158 0.00 0.00 46.93 3.79
171 172 2.315386 GCACGAACCCACGACCTTC 61.315 63.158 0.00 0.00 37.03 3.46
172 173 2.280592 GCACGAACCCACGACCTT 60.281 61.111 0.00 0.00 37.03 3.50
173 174 4.657824 CGCACGAACCCACGACCT 62.658 66.667 0.00 0.00 37.03 3.85
181 182 2.841160 AAAACTGCCCGCACGAACC 61.841 57.895 0.00 0.00 0.00 3.62
182 183 1.657181 CAAAACTGCCCGCACGAAC 60.657 57.895 0.00 0.00 0.00 3.95
183 184 1.658686 AACAAAACTGCCCGCACGAA 61.659 50.000 0.00 0.00 0.00 3.85
184 185 2.054140 GAACAAAACTGCCCGCACGA 62.054 55.000 0.00 0.00 0.00 4.35
185 186 1.657181 GAACAAAACTGCCCGCACG 60.657 57.895 0.00 0.00 0.00 5.34
186 187 0.594796 CTGAACAAAACTGCCCGCAC 60.595 55.000 0.00 0.00 0.00 5.34
187 188 1.732917 CTGAACAAAACTGCCCGCA 59.267 52.632 0.00 0.00 0.00 5.69
188 189 1.007387 CCTGAACAAAACTGCCCGC 60.007 57.895 0.00 0.00 0.00 6.13
189 190 0.310854 GTCCTGAACAAAACTGCCCG 59.689 55.000 0.00 0.00 0.00 6.13
190 191 0.310854 CGTCCTGAACAAAACTGCCC 59.689 55.000 0.00 0.00 0.00 5.36
191 192 1.305201 TCGTCCTGAACAAAACTGCC 58.695 50.000 0.00 0.00 0.00 4.85
192 193 2.287009 CCTTCGTCCTGAACAAAACTGC 60.287 50.000 0.00 0.00 31.87 4.40
193 194 3.202906 TCCTTCGTCCTGAACAAAACTG 58.797 45.455 0.00 0.00 31.87 3.16
194 195 3.553828 TCCTTCGTCCTGAACAAAACT 57.446 42.857 0.00 0.00 31.87 2.66
195 196 3.545426 CGTTCCTTCGTCCTGAACAAAAC 60.545 47.826 0.00 0.00 38.59 2.43
196 197 2.610374 CGTTCCTTCGTCCTGAACAAAA 59.390 45.455 0.00 0.00 38.59 2.44
197 198 2.206750 CGTTCCTTCGTCCTGAACAAA 58.793 47.619 0.00 0.00 38.59 2.83
198 199 1.539496 CCGTTCCTTCGTCCTGAACAA 60.539 52.381 0.00 0.00 38.59 2.83
199 200 0.032952 CCGTTCCTTCGTCCTGAACA 59.967 55.000 0.00 0.00 38.59 3.18
200 201 0.669625 CCCGTTCCTTCGTCCTGAAC 60.670 60.000 0.00 0.00 36.02 3.18
201 202 1.669440 CCCGTTCCTTCGTCCTGAA 59.331 57.895 0.00 0.00 34.74 3.02
202 203 2.280552 CCCCGTTCCTTCGTCCTGA 61.281 63.158 0.00 0.00 0.00 3.86
203 204 2.227089 CTCCCCGTTCCTTCGTCCTG 62.227 65.000 0.00 0.00 0.00 3.86
204 205 1.982938 CTCCCCGTTCCTTCGTCCT 60.983 63.158 0.00 0.00 0.00 3.85
205 206 2.577593 CTCCCCGTTCCTTCGTCC 59.422 66.667 0.00 0.00 0.00 4.79
206 207 1.328430 ATCCTCCCCGTTCCTTCGTC 61.328 60.000 0.00 0.00 0.00 4.20
207 208 0.908180 AATCCTCCCCGTTCCTTCGT 60.908 55.000 0.00 0.00 0.00 3.85
208 209 1.068741 CTAATCCTCCCCGTTCCTTCG 59.931 57.143 0.00 0.00 0.00 3.79
209 210 2.102757 GACTAATCCTCCCCGTTCCTTC 59.897 54.545 0.00 0.00 0.00 3.46
210 211 2.117051 GACTAATCCTCCCCGTTCCTT 58.883 52.381 0.00 0.00 0.00 3.36
211 212 1.790818 GACTAATCCTCCCCGTTCCT 58.209 55.000 0.00 0.00 0.00 3.36
212 213 0.388294 CGACTAATCCTCCCCGTTCC 59.612 60.000 0.00 0.00 0.00 3.62
213 214 1.109609 ACGACTAATCCTCCCCGTTC 58.890 55.000 0.00 0.00 0.00 3.95
214 215 0.822164 CACGACTAATCCTCCCCGTT 59.178 55.000 0.00 0.00 0.00 4.44
215 216 1.673808 GCACGACTAATCCTCCCCGT 61.674 60.000 0.00 0.00 0.00 5.28
216 217 1.067582 GCACGACTAATCCTCCCCG 59.932 63.158 0.00 0.00 0.00 5.73
217 218 1.067582 CGCACGACTAATCCTCCCC 59.932 63.158 0.00 0.00 0.00 4.81
218 219 1.067582 CCGCACGACTAATCCTCCC 59.932 63.158 0.00 0.00 0.00 4.30
219 220 1.067582 CCCGCACGACTAATCCTCC 59.932 63.158 0.00 0.00 0.00 4.30
220 221 0.248949 GACCCGCACGACTAATCCTC 60.249 60.000 0.00 0.00 0.00 3.71
221 222 1.673808 GGACCCGCACGACTAATCCT 61.674 60.000 0.00 0.00 0.00 3.24
222 223 1.227176 GGACCCGCACGACTAATCC 60.227 63.158 0.00 0.00 0.00 3.01
223 224 0.175073 AAGGACCCGCACGACTAATC 59.825 55.000 0.00 0.00 0.00 1.75
224 225 0.611714 AAAGGACCCGCACGACTAAT 59.388 50.000 0.00 0.00 0.00 1.73
225 226 0.393820 AAAAGGACCCGCACGACTAA 59.606 50.000 0.00 0.00 0.00 2.24
226 227 0.320073 CAAAAGGACCCGCACGACTA 60.320 55.000 0.00 0.00 0.00 2.59
227 228 1.597027 CAAAAGGACCCGCACGACT 60.597 57.895 0.00 0.00 0.00 4.18
228 229 2.943653 CAAAAGGACCCGCACGAC 59.056 61.111 0.00 0.00 0.00 4.34
229 230 2.951475 AAGCAAAAGGACCCGCACGA 62.951 55.000 0.00 0.00 0.00 4.35
230 231 1.231958 TAAGCAAAAGGACCCGCACG 61.232 55.000 0.00 0.00 0.00 5.34
231 232 0.240145 GTAAGCAAAAGGACCCGCAC 59.760 55.000 0.00 0.00 0.00 5.34
232 233 0.109723 AGTAAGCAAAAGGACCCGCA 59.890 50.000 0.00 0.00 0.00 5.69
233 234 0.521735 CAGTAAGCAAAAGGACCCGC 59.478 55.000 0.00 0.00 0.00 6.13
234 235 0.521735 GCAGTAAGCAAAAGGACCCG 59.478 55.000 0.00 0.00 44.79 5.28
235 236 0.521735 CGCAGTAAGCAAAAGGACCC 59.478 55.000 0.00 0.00 46.13 4.46
236 237 1.069227 CACGCAGTAAGCAAAAGGACC 60.069 52.381 0.00 0.00 41.61 4.46
237 238 1.871039 TCACGCAGTAAGCAAAAGGAC 59.129 47.619 0.00 0.00 41.61 3.85
238 239 2.248280 TCACGCAGTAAGCAAAAGGA 57.752 45.000 0.00 0.00 41.61 3.36
239 240 3.559238 AATCACGCAGTAAGCAAAAGG 57.441 42.857 0.00 0.00 41.61 3.11
240 241 5.082059 CACTAATCACGCAGTAAGCAAAAG 58.918 41.667 0.00 0.00 41.61 2.27
241 242 4.083537 CCACTAATCACGCAGTAAGCAAAA 60.084 41.667 0.00 0.00 41.61 2.44
242 243 3.435327 CCACTAATCACGCAGTAAGCAAA 59.565 43.478 0.00 0.00 41.61 3.68
243 244 3.000041 CCACTAATCACGCAGTAAGCAA 59.000 45.455 0.00 0.00 41.61 3.91
244 245 2.616960 CCACTAATCACGCAGTAAGCA 58.383 47.619 0.00 0.00 41.61 3.91
245 246 1.327764 GCCACTAATCACGCAGTAAGC 59.672 52.381 0.00 0.00 41.61 3.09
246 247 2.893637 AGCCACTAATCACGCAGTAAG 58.106 47.619 0.00 0.00 41.61 2.34
247 248 3.000041 CAAGCCACTAATCACGCAGTAA 59.000 45.455 0.00 0.00 41.61 2.24
248 249 2.616960 CAAGCCACTAATCACGCAGTA 58.383 47.619 0.00 0.00 41.61 2.74
250 251 0.097674 GCAAGCCACTAATCACGCAG 59.902 55.000 0.00 0.00 0.00 5.18
251 252 0.321564 AGCAAGCCACTAATCACGCA 60.322 50.000 0.00 0.00 0.00 5.24
252 253 1.594862 CTAGCAAGCCACTAATCACGC 59.405 52.381 0.00 0.00 0.00 5.34
253 254 2.893637 ACTAGCAAGCCACTAATCACG 58.106 47.619 0.00 0.00 0.00 4.35
254 255 8.336080 GTTTAATACTAGCAAGCCACTAATCAC 58.664 37.037 0.00 0.00 0.00 3.06
255 256 8.044309 TGTTTAATACTAGCAAGCCACTAATCA 58.956 33.333 0.00 0.00 0.00 2.57
256 257 8.433421 TGTTTAATACTAGCAAGCCACTAATC 57.567 34.615 0.00 0.00 0.00 1.75
257 258 8.980481 ATGTTTAATACTAGCAAGCCACTAAT 57.020 30.769 0.00 0.00 0.00 1.73
258 259 9.893634 TTATGTTTAATACTAGCAAGCCACTAA 57.106 29.630 0.00 0.00 0.00 2.24
259 260 9.893634 TTTATGTTTAATACTAGCAAGCCACTA 57.106 29.630 0.00 0.00 0.00 2.74
260 261 8.801882 TTTATGTTTAATACTAGCAAGCCACT 57.198 30.769 0.00 0.00 0.00 4.00
261 262 9.849166 TTTTTATGTTTAATACTAGCAAGCCAC 57.151 29.630 0.00 0.00 0.00 5.01
285 286 6.938030 TGAACATCTAATGGTCCGTAGTTTTT 59.062 34.615 2.70 0.00 46.39 1.94
286 287 6.469410 TGAACATCTAATGGTCCGTAGTTTT 58.531 36.000 2.70 0.00 46.39 2.43
287 288 6.045072 TGAACATCTAATGGTCCGTAGTTT 57.955 37.500 2.70 0.00 46.39 2.66
288 289 5.670792 TGAACATCTAATGGTCCGTAGTT 57.329 39.130 2.70 0.00 46.39 2.24
289 290 5.362717 TCATGAACATCTAATGGTCCGTAGT 59.637 40.000 0.00 0.00 46.39 2.73
290 291 5.842907 TCATGAACATCTAATGGTCCGTAG 58.157 41.667 0.00 0.00 46.39 3.51
291 292 5.862678 TCATGAACATCTAATGGTCCGTA 57.137 39.130 0.00 0.00 46.39 4.02
292 293 4.753516 TCATGAACATCTAATGGTCCGT 57.246 40.909 0.00 0.00 46.39 4.69
293 294 4.453478 CCATCATGAACATCTAATGGTCCG 59.547 45.833 0.00 0.00 46.39 4.79
294 295 5.624159 TCCATCATGAACATCTAATGGTCC 58.376 41.667 0.00 0.00 46.39 4.46
296 297 6.008331 CCATCCATCATGAACATCTAATGGT 58.992 40.000 0.00 0.00 36.04 3.55
297 298 6.008331 ACCATCCATCATGAACATCTAATGG 58.992 40.000 0.00 8.91 36.77 3.16
298 299 7.013942 ACAACCATCCATCATGAACATCTAATG 59.986 37.037 0.00 0.00 33.80 1.90
299 300 7.013942 CACAACCATCCATCATGAACATCTAAT 59.986 37.037 0.00 0.00 33.80 1.73
300 301 6.319405 CACAACCATCCATCATGAACATCTAA 59.681 38.462 0.00 0.00 33.80 2.10
301 302 5.824097 CACAACCATCCATCATGAACATCTA 59.176 40.000 0.00 0.00 33.80 1.98
302 303 4.643334 CACAACCATCCATCATGAACATCT 59.357 41.667 0.00 0.00 33.80 2.90
303 304 4.641541 TCACAACCATCCATCATGAACATC 59.358 41.667 0.00 0.00 33.80 3.06
304 305 4.602107 TCACAACCATCCATCATGAACAT 58.398 39.130 0.00 0.00 33.80 2.71
305 306 4.031636 TCACAACCATCCATCATGAACA 57.968 40.909 0.00 0.00 33.80 3.18
306 307 5.105635 ACAATCACAACCATCCATCATGAAC 60.106 40.000 0.00 0.00 33.80 3.18
307 308 5.018149 ACAATCACAACCATCCATCATGAA 58.982 37.500 0.00 0.00 33.80 2.57
308 309 4.602107 ACAATCACAACCATCCATCATGA 58.398 39.130 0.00 0.00 33.80 3.07
309 310 4.994907 ACAATCACAACCATCCATCATG 57.005 40.909 0.00 0.00 0.00 3.07
310 311 5.337733 CCAAACAATCACAACCATCCATCAT 60.338 40.000 0.00 0.00 0.00 2.45
311 312 4.021280 CCAAACAATCACAACCATCCATCA 60.021 41.667 0.00 0.00 0.00 3.07
312 313 4.220382 TCCAAACAATCACAACCATCCATC 59.780 41.667 0.00 0.00 0.00 3.51
313 314 4.158786 TCCAAACAATCACAACCATCCAT 58.841 39.130 0.00 0.00 0.00 3.41
314 315 3.570540 TCCAAACAATCACAACCATCCA 58.429 40.909 0.00 0.00 0.00 3.41
315 316 4.463891 AGATCCAAACAATCACAACCATCC 59.536 41.667 0.00 0.00 0.00 3.51
316 317 5.404946 CAGATCCAAACAATCACAACCATC 58.595 41.667 0.00 0.00 0.00 3.51
317 318 4.322198 GCAGATCCAAACAATCACAACCAT 60.322 41.667 0.00 0.00 0.00 3.55
318 319 3.005684 GCAGATCCAAACAATCACAACCA 59.994 43.478 0.00 0.00 0.00 3.67
319 320 3.578688 GCAGATCCAAACAATCACAACC 58.421 45.455 0.00 0.00 0.00 3.77
320 321 3.578688 GGCAGATCCAAACAATCACAAC 58.421 45.455 0.00 0.00 34.01 3.32
321 322 2.228582 CGGCAGATCCAAACAATCACAA 59.771 45.455 0.00 0.00 34.01 3.33
322 323 1.811965 CGGCAGATCCAAACAATCACA 59.188 47.619 0.00 0.00 34.01 3.58
323 324 1.468054 GCGGCAGATCCAAACAATCAC 60.468 52.381 0.00 0.00 34.01 3.06
324 325 0.810648 GCGGCAGATCCAAACAATCA 59.189 50.000 0.00 0.00 34.01 2.57
325 326 1.064654 GAGCGGCAGATCCAAACAATC 59.935 52.381 1.45 0.00 34.01 2.67
326 327 1.098050 GAGCGGCAGATCCAAACAAT 58.902 50.000 1.45 0.00 34.01 2.71
327 328 0.036732 AGAGCGGCAGATCCAAACAA 59.963 50.000 1.45 0.00 32.16 2.83
328 329 0.391661 GAGAGCGGCAGATCCAAACA 60.392 55.000 1.45 0.00 32.16 2.83
329 330 0.107945 AGAGAGCGGCAGATCCAAAC 60.108 55.000 1.45 0.00 32.16 2.93
330 331 0.615331 AAGAGAGCGGCAGATCCAAA 59.385 50.000 1.45 0.00 32.16 3.28
331 332 0.176680 GAAGAGAGCGGCAGATCCAA 59.823 55.000 1.45 0.00 32.16 3.53
332 333 1.680522 GGAAGAGAGCGGCAGATCCA 61.681 60.000 1.45 0.00 32.16 3.41
333 334 1.068921 GGAAGAGAGCGGCAGATCC 59.931 63.158 1.45 0.00 32.16 3.36
334 335 0.463620 AAGGAAGAGAGCGGCAGATC 59.536 55.000 1.45 0.00 0.00 2.75
335 336 0.908198 AAAGGAAGAGAGCGGCAGAT 59.092 50.000 1.45 0.00 0.00 2.90
336 337 0.687354 AAAAGGAAGAGAGCGGCAGA 59.313 50.000 1.45 0.00 0.00 4.26
337 338 2.386661 TAAAAGGAAGAGAGCGGCAG 57.613 50.000 1.45 0.00 0.00 4.85
338 339 3.451178 ACTATAAAAGGAAGAGAGCGGCA 59.549 43.478 1.45 0.00 0.00 5.69
339 340 3.804873 CACTATAAAAGGAAGAGAGCGGC 59.195 47.826 0.00 0.00 0.00 6.53
340 341 4.141914 ACCACTATAAAAGGAAGAGAGCGG 60.142 45.833 0.00 0.00 0.00 5.52
341 342 5.012328 ACCACTATAAAAGGAAGAGAGCG 57.988 43.478 0.00 0.00 0.00 5.03
342 343 7.114866 ACTACCACTATAAAAGGAAGAGAGC 57.885 40.000 0.00 0.00 0.00 4.09
343 344 9.629878 TCTACTACCACTATAAAAGGAAGAGAG 57.370 37.037 0.00 0.00 0.00 3.20
346 347 8.639761 GCATCTACTACCACTATAAAAGGAAGA 58.360 37.037 0.00 0.00 0.00 2.87
347 348 7.595502 CGCATCTACTACCACTATAAAAGGAAG 59.404 40.741 0.00 0.00 0.00 3.46
348 349 7.431249 CGCATCTACTACCACTATAAAAGGAA 58.569 38.462 0.00 0.00 0.00 3.36
349 350 6.015688 CCGCATCTACTACCACTATAAAAGGA 60.016 42.308 0.00 0.00 0.00 3.36
350 351 6.157211 CCGCATCTACTACCACTATAAAAGG 58.843 44.000 0.00 0.00 0.00 3.11
351 352 6.746120 ACCGCATCTACTACCACTATAAAAG 58.254 40.000 0.00 0.00 0.00 2.27
352 353 6.720112 ACCGCATCTACTACCACTATAAAA 57.280 37.500 0.00 0.00 0.00 1.52
353 354 9.690913 ATATACCGCATCTACTACCACTATAAA 57.309 33.333 0.00 0.00 0.00 1.40
354 355 9.117183 CATATACCGCATCTACTACCACTATAA 57.883 37.037 0.00 0.00 0.00 0.98
355 356 8.270030 ACATATACCGCATCTACTACCACTATA 58.730 37.037 0.00 0.00 0.00 1.31
356 357 7.117397 ACATATACCGCATCTACTACCACTAT 58.883 38.462 0.00 0.00 0.00 2.12
357 358 6.479006 ACATATACCGCATCTACTACCACTA 58.521 40.000 0.00 0.00 0.00 2.74
358 359 5.322754 ACATATACCGCATCTACTACCACT 58.677 41.667 0.00 0.00 0.00 4.00
359 360 5.415077 AGACATATACCGCATCTACTACCAC 59.585 44.000 0.00 0.00 0.00 4.16
360 361 5.567430 AGACATATACCGCATCTACTACCA 58.433 41.667 0.00 0.00 0.00 3.25
361 362 7.804843 ATAGACATATACCGCATCTACTACC 57.195 40.000 0.00 0.00 0.00 3.18
364 365 9.058174 GTGATATAGACATATACCGCATCTACT 57.942 37.037 0.00 0.00 0.00 2.57
365 366 9.058174 AGTGATATAGACATATACCGCATCTAC 57.942 37.037 0.00 0.00 0.00 2.59
366 367 9.274206 GAGTGATATAGACATATACCGCATCTA 57.726 37.037 0.00 0.00 0.00 1.98
367 368 7.041712 CGAGTGATATAGACATATACCGCATCT 60.042 40.741 0.00 0.00 0.00 2.90
368 369 7.041984 TCGAGTGATATAGACATATACCGCATC 60.042 40.741 0.00 0.00 0.00 3.91
378 379 4.004314 CGAGGGTCGAGTGATATAGACAT 58.996 47.826 0.00 0.00 43.74 3.06
389 390 0.179000 ATACGTACCGAGGGTCGAGT 59.821 55.000 0.00 4.91 43.74 4.18
430 431 0.097674 CCTTTCCTGCGCTGATTTCG 59.902 55.000 16.65 0.00 0.00 3.46
440 441 3.056328 GGACGCCACCTTTCCTGC 61.056 66.667 0.00 0.00 0.00 4.85
441 442 2.742372 CGGACGCCACCTTTCCTG 60.742 66.667 0.00 0.00 0.00 3.86
442 443 4.016706 CCGGACGCCACCTTTCCT 62.017 66.667 0.00 0.00 0.00 3.36
443 444 4.324991 ACCGGACGCCACCTTTCC 62.325 66.667 9.46 0.00 0.00 3.13
713 1048 1.585006 GTCGTGGAGGTGTCGTGAT 59.415 57.895 0.00 0.00 0.00 3.06
714 1049 2.900167 CGTCGTGGAGGTGTCGTGA 61.900 63.158 0.00 0.00 0.00 4.35
721 1056 4.640855 CGCACACGTCGTGGAGGT 62.641 66.667 27.77 5.34 46.45 3.85
748 1083 2.014554 CGAACTCCACACGTGTCGG 61.015 63.158 20.49 22.22 0.00 4.79
816 1155 1.672356 CGGAGTTCCCCTGCTGTTG 60.672 63.158 0.00 0.00 0.00 3.33
878 1469 5.735892 CAGATGAGAAAAATGCGTGTATGTG 59.264 40.000 0.00 0.00 0.00 3.21
947 1544 1.138047 CGACGACCGGAATGTAGCAC 61.138 60.000 9.46 0.00 33.91 4.40
948 1545 1.138036 CGACGACCGGAATGTAGCA 59.862 57.895 9.46 0.00 33.91 3.49
949 1546 2.228914 GCGACGACCGGAATGTAGC 61.229 63.158 9.46 11.57 39.04 3.58
994 1591 1.806461 GCGTCGGGCCTCATCAGATA 61.806 60.000 0.84 0.00 34.80 1.98
1113 1710 1.755959 GAGCAAGATGGAGAGCTGAGA 59.244 52.381 0.00 0.00 37.48 3.27
1130 1727 6.112058 AGAGAATGGTCTTAACAGATTGAGC 58.888 40.000 0.00 0.00 32.80 4.26
1163 1760 6.061022 TCCTGCACAAGTGGATAATAGAAA 57.939 37.500 2.00 0.00 0.00 2.52
1164 1761 5.396772 CCTCCTGCACAAGTGGATAATAGAA 60.397 44.000 2.00 0.00 0.00 2.10
1165 1762 4.101585 CCTCCTGCACAAGTGGATAATAGA 59.898 45.833 2.00 0.00 0.00 1.98
1235 1832 7.118971 GTCTATATACGTACCTCGGTGAAGATT 59.881 40.741 0.00 0.00 44.69 2.40
1254 1851 1.140252 ACAAAAGCCGGCCGTCTATAT 59.860 47.619 26.15 3.54 0.00 0.86
1261 1858 1.154035 GATGAACAAAAGCCGGCCG 60.154 57.895 26.15 21.04 0.00 6.13
1263 1860 0.454452 GACGATGAACAAAAGCCGGC 60.454 55.000 21.89 21.89 0.00 6.13
1266 1863 2.534939 CGATCGACGATGAACAAAAGCC 60.535 50.000 16.49 0.00 45.77 4.35
1272 1869 1.226859 GGCCGATCGACGATGAACA 60.227 57.895 18.66 0.00 45.77 3.18
1298 1908 4.174411 TCGTCGATCACAAAGTTGAGAT 57.826 40.909 3.97 3.97 40.41 2.75
1303 1913 2.800544 CTGGTTCGTCGATCACAAAGTT 59.199 45.455 0.00 0.00 0.00 2.66
1304 1914 2.404215 CTGGTTCGTCGATCACAAAGT 58.596 47.619 0.00 0.00 0.00 2.66
1448 2069 1.066136 GTCAAGAAACGCGTAGGGAC 58.934 55.000 14.46 12.63 46.37 4.46
1481 2102 2.677228 GCCCATACTGGTGGCAGT 59.323 61.111 0.00 0.00 44.70 4.40
1504 2125 4.208686 ATCTCGTTCCTCGGCGGC 62.209 66.667 7.21 0.00 40.32 6.53
1650 2273 7.173218 TCTGTAGAAAAATGCTTTCTCGAATGT 59.827 33.333 2.94 0.00 39.30 2.71
1661 2284 6.127897 CCTTTCCGAATCTGTAGAAAAATGCT 60.128 38.462 0.00 0.00 0.00 3.79
1667 2290 4.280436 TGCCTTTCCGAATCTGTAGAAA 57.720 40.909 0.00 0.00 0.00 2.52
1670 2293 3.310774 CACATGCCTTTCCGAATCTGTAG 59.689 47.826 0.00 0.00 0.00 2.74
1676 2299 2.726821 ACATCACATGCCTTTCCGAAT 58.273 42.857 0.00 0.00 0.00 3.34
1744 2435 9.840427 AAATAACACCGTTTTCATAAGAATCTG 57.160 29.630 0.00 0.00 32.89 2.90
1991 2682 9.911788 CCCATCTATAAATAGGAGCATTTACAT 57.088 33.333 0.00 0.00 34.17 2.29
1992 2683 9.111519 TCCCATCTATAAATAGGAGCATTTACA 57.888 33.333 0.00 0.00 34.17 2.41
1993 2684 9.959721 TTCCCATCTATAAATAGGAGCATTTAC 57.040 33.333 0.00 0.00 34.17 2.01
1995 2686 8.673251 ACTTCCCATCTATAAATAGGAGCATTT 58.327 33.333 0.00 0.00 32.91 2.32
1996 2687 8.224620 ACTTCCCATCTATAAATAGGAGCATT 57.775 34.615 0.00 0.00 0.00 3.56
1997 2688 7.821134 ACTTCCCATCTATAAATAGGAGCAT 57.179 36.000 0.00 0.00 0.00 3.79
1998 2689 8.762645 CATACTTCCCATCTATAAATAGGAGCA 58.237 37.037 0.00 0.00 0.00 4.26
1999 2690 8.763601 ACATACTTCCCATCTATAAATAGGAGC 58.236 37.037 0.00 0.00 0.00 4.70
2007 2698 9.403583 GGACAAAAACATACTTCCCATCTATAA 57.596 33.333 0.00 0.00 0.00 0.98
2008 2699 8.553153 TGGACAAAAACATACTTCCCATCTATA 58.447 33.333 0.00 0.00 0.00 1.31
2009 2700 7.410174 TGGACAAAAACATACTTCCCATCTAT 58.590 34.615 0.00 0.00 0.00 1.98
2010 2701 6.785076 TGGACAAAAACATACTTCCCATCTA 58.215 36.000 0.00 0.00 0.00 1.98
2011 2702 5.640147 TGGACAAAAACATACTTCCCATCT 58.360 37.500 0.00 0.00 0.00 2.90
2012 2703 5.975693 TGGACAAAAACATACTTCCCATC 57.024 39.130 0.00 0.00 0.00 3.51
2013 2704 6.015918 TGATGGACAAAAACATACTTCCCAT 58.984 36.000 0.00 0.00 34.88 4.00
2014 2705 5.389520 TGATGGACAAAAACATACTTCCCA 58.610 37.500 0.00 0.00 0.00 4.37
2015 2706 5.105756 CCTGATGGACAAAAACATACTTCCC 60.106 44.000 0.00 0.00 34.57 3.97
2016 2707 5.476945 ACCTGATGGACAAAAACATACTTCC 59.523 40.000 0.00 0.00 37.04 3.46
2017 2708 6.575162 ACCTGATGGACAAAAACATACTTC 57.425 37.500 0.00 0.00 37.04 3.01
2018 2709 6.015434 GGAACCTGATGGACAAAAACATACTT 60.015 38.462 0.00 0.00 37.04 2.24
2019 2710 5.476945 GGAACCTGATGGACAAAAACATACT 59.523 40.000 0.00 0.00 37.04 2.12
2020 2711 5.709966 GGAACCTGATGGACAAAAACATAC 58.290 41.667 0.00 0.00 37.04 2.39
2021 2712 5.975693 GGAACCTGATGGACAAAAACATA 57.024 39.130 0.00 0.00 37.04 2.29
2056 2747 6.433093 TGTCTAAAAAGCCCTTTAGGATCAAC 59.567 38.462 12.75 6.30 38.75 3.18
2070 2761 7.862873 ACTTGTAGAGCAAAATGTCTAAAAAGC 59.137 33.333 0.00 0.00 36.53 3.51
2071 2762 9.387123 GACTTGTAGAGCAAAATGTCTAAAAAG 57.613 33.333 0.00 0.00 36.53 2.27
2076 2767 6.993079 TGAGACTTGTAGAGCAAAATGTCTA 58.007 36.000 0.00 0.00 39.03 2.59
2087 2778 8.091449 ACTTATCCTGTTTTGAGACTTGTAGAG 58.909 37.037 0.00 0.00 0.00 2.43
2117 2808 7.934855 ACAAGCTCAGAATCTGATTTTACAT 57.065 32.000 13.93 0.00 39.92 2.29
2132 2823 0.825010 AACCCTGCCAACAAGCTCAG 60.825 55.000 0.00 0.00 0.00 3.35
2141 2832 3.517296 TTATCTGTCAAACCCTGCCAA 57.483 42.857 0.00 0.00 0.00 4.52
2146 2837 7.510675 TCTTCCTATTTATCTGTCAAACCCT 57.489 36.000 0.00 0.00 0.00 4.34
2164 2855 9.702494 CTGATTTTCTTTTTGCTATTTCTTCCT 57.298 29.630 0.00 0.00 0.00 3.36
2165 2856 9.696917 TCTGATTTTCTTTTTGCTATTTCTTCC 57.303 29.630 0.00 0.00 0.00 3.46
2211 2923 4.539870 CAAAGCATCTTTGTTGTCACGAT 58.460 39.130 10.28 0.00 0.00 3.73
2213 2925 3.044986 CCAAAGCATCTTTGTTGTCACG 58.955 45.455 15.51 0.00 0.00 4.35
2222 2934 5.888161 CACCTAGAATACCCAAAGCATCTTT 59.112 40.000 0.00 0.00 0.00 2.52
2231 2943 7.563724 AAACTTACTCACCTAGAATACCCAA 57.436 36.000 0.00 0.00 0.00 4.12
2237 2949 8.747538 AACACAAAAACTTACTCACCTAGAAT 57.252 30.769 0.00 0.00 0.00 2.40
2241 2953 6.339730 TCGAACACAAAAACTTACTCACCTA 58.660 36.000 0.00 0.00 0.00 3.08
2250 2962 6.635239 CGGATGTTATTCGAACACAAAAACTT 59.365 34.615 14.29 5.27 32.37 2.66
2251 2963 6.017770 TCGGATGTTATTCGAACACAAAAACT 60.018 34.615 14.29 0.31 32.37 2.66
2252 2964 6.137415 TCGGATGTTATTCGAACACAAAAAC 58.863 36.000 14.29 7.08 32.37 2.43
2253 2965 6.203145 TCTCGGATGTTATTCGAACACAAAAA 59.797 34.615 14.29 0.00 32.37 1.94
2258 2971 4.259850 GCTTCTCGGATGTTATTCGAACAC 60.260 45.833 0.00 0.57 32.37 3.32
2259 2972 3.863424 GCTTCTCGGATGTTATTCGAACA 59.137 43.478 0.00 0.00 32.35 3.18
2264 2977 4.329462 AGGAGCTTCTCGGATGTTATTC 57.671 45.455 0.00 0.00 0.00 1.75
2331 3044 7.148390 TGTGTTTTGACATTCGAAGAGTTTGTA 60.148 33.333 3.35 0.00 38.43 2.41
2340 3053 8.472683 AAATTTCTTGTGTTTTGACATTCGAA 57.527 26.923 0.00 0.00 0.00 3.71
2350 3063 6.183360 GGTGCGAGAAAAATTTCTTGTGTTTT 60.183 34.615 19.39 0.00 46.84 2.43
2359 3072 4.159120 GTGCTAGGTGCGAGAAAAATTTC 58.841 43.478 0.00 0.00 46.63 2.17
2361 3074 3.058224 GTGTGCTAGGTGCGAGAAAAATT 60.058 43.478 0.00 0.00 46.63 1.82
2363 3076 1.871039 GTGTGCTAGGTGCGAGAAAAA 59.129 47.619 0.00 0.00 46.63 1.94
2364 3077 1.508632 GTGTGCTAGGTGCGAGAAAA 58.491 50.000 0.00 0.00 46.63 2.29
2378 3091 2.268076 AACCGATGCTTGGGTGTGC 61.268 57.895 7.06 0.00 33.69 4.57
2465 3180 2.247358 GGGTTTGACCATGTTGACCAT 58.753 47.619 0.00 0.00 41.02 3.55
2469 3184 2.174639 AGAGTGGGTTTGACCATGTTGA 59.825 45.455 0.00 0.00 43.59 3.18
2472 3187 2.708861 TGTAGAGTGGGTTTGACCATGT 59.291 45.455 0.00 0.00 43.59 3.21
2473 3188 3.417069 TGTAGAGTGGGTTTGACCATG 57.583 47.619 0.00 0.00 43.59 3.66
2474 3189 3.873801 GCATGTAGAGTGGGTTTGACCAT 60.874 47.826 0.00 0.00 43.59 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.