Multiple sequence alignment - TraesCS4A01G211100
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BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS4A01G211100
chr4A
100.000
4740
0
0
1
4740
504793520
504788781
0.000000e+00
8754
1
TraesCS4A01G211100
chr4D
93.570
3888
153
50
1
3845
80833801
80837634
0.000000e+00
5705
2
TraesCS4A01G211100
chr4D
91.572
878
54
12
3870
4738
80837760
80838626
0.000000e+00
1194
3
TraesCS4A01G211100
chr4B
92.738
1859
57
30
2039
3872
112920901
112922706
0.000000e+00
2614
4
TraesCS4A01G211100
chr4B
91.021
1459
72
31
610
2040
112919392
112920819
0.000000e+00
1914
5
TraesCS4A01G211100
chr4B
98.450
516
5
1
1
516
112918565
112919077
0.000000e+00
905
6
TraesCS4A01G211100
chr4B
93.506
616
24
9
4126
4738
112923198
112923800
0.000000e+00
902
7
TraesCS4A01G211100
chr4B
94.118
255
13
1
3870
4124
112922796
112923048
2.070000e-103
387
8
TraesCS4A01G211100
chr3D
81.122
196
37
0
2783
2978
546198931
546198736
1.770000e-34
158
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS4A01G211100
chr4A
504788781
504793520
4739
True
8754.0
8754
100.0000
1
4740
1
chr4A.!!$R1
4739
1
TraesCS4A01G211100
chr4D
80833801
80838626
4825
False
3449.5
5705
92.5710
1
4738
2
chr4D.!!$F1
4737
2
TraesCS4A01G211100
chr4B
112918565
112923800
5235
False
1344.4
2614
93.9666
1
4738
5
chr4B.!!$F1
4737
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
556
557
0.179048
TGCGTTGCATATGGAGGAGG
60.179
55.0
4.56
0.0
31.71
4.30
F
558
559
0.250467
CGTTGCATATGGAGGAGGGG
60.250
60.0
4.56
0.0
0.00
4.79
F
561
562
0.474466
TGCATATGGAGGAGGGGAGG
60.474
60.0
4.56
0.0
0.00
4.30
F
563
564
0.548682
CATATGGAGGAGGGGAGGGG
60.549
65.0
0.00
0.0
0.00
4.79
F
756
978
0.729478
CCTACACACACGCACGAGAG
60.729
60.0
0.00
0.0
0.00
3.20
F
891
1116
0.853586
TCCCCAAACCCTAGCCCAAT
60.854
55.0
0.00
0.0
0.00
3.16
F
1310
1535
0.876342
GAAACTGCCGGCCTATCTCG
60.876
60.0
26.77
5.8
0.00
4.04
F
2953
3337
1.148310
CTGACAACGCCGTCAAGAAT
58.852
50.0
8.64
0.0
44.97
2.40
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1569
1801
0.598065
AAAAACTAAGCCCAGCGCAG
59.402
50.000
11.47
0.0
41.38
5.18
R
2234
2579
0.690762
AACACACCCTACCGCATCTT
59.309
50.000
0.00
0.0
0.00
2.40
R
2286
2641
1.745087
CGTGCTTTGCCTGGTGATTAT
59.255
47.619
0.00
0.0
0.00
1.28
R
2455
2816
5.392165
GGCACATAAAGGTTATTGCGTACAA
60.392
40.000
0.00
0.0
40.87
2.41
R
2567
2928
3.624326
TTGCAAGGACGTGAAATTCTG
57.376
42.857
0.00
0.0
0.00
3.02
R
2845
3229
0.106619
GCTCCTCCTCTTCCTCCGTA
60.107
60.000
0.00
0.0
0.00
4.02
R
3273
3660
1.045911
GGAGGAGAAGGCGATGGAGT
61.046
60.000
0.00
0.0
0.00
3.85
R
4500
5156
2.557924
GGTTGTTCATGCAGTTCCATCA
59.442
45.455
0.00
0.0
0.00
3.07
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
473
474
3.585748
TTGAAACGAAGCGTCAAGAAG
57.414
42.857
0.00
0.00
39.99
2.85
540
541
5.039480
AGAAAGTTGATGATGTCTTTGCG
57.961
39.130
0.00
0.00
31.56
4.85
546
547
2.488937
TGATGATGTCTTTGCGTTGCAT
59.511
40.909
0.00
0.00
38.76
3.96
552
553
2.419673
TGTCTTTGCGTTGCATATGGAG
59.580
45.455
4.56
0.00
38.76
3.86
553
554
2.016318
TCTTTGCGTTGCATATGGAGG
58.984
47.619
4.56
0.00
38.76
4.30
554
555
2.016318
CTTTGCGTTGCATATGGAGGA
58.984
47.619
4.56
0.00
38.76
3.71
555
556
1.667236
TTGCGTTGCATATGGAGGAG
58.333
50.000
4.56
0.00
38.76
3.69
556
557
0.179048
TGCGTTGCATATGGAGGAGG
60.179
55.000
4.56
0.00
31.71
4.30
557
558
0.886490
GCGTTGCATATGGAGGAGGG
60.886
60.000
4.56
0.00
0.00
4.30
558
559
0.250467
CGTTGCATATGGAGGAGGGG
60.250
60.000
4.56
0.00
0.00
4.79
559
560
1.140312
GTTGCATATGGAGGAGGGGA
58.860
55.000
4.56
0.00
0.00
4.81
560
561
1.072965
GTTGCATATGGAGGAGGGGAG
59.927
57.143
4.56
0.00
0.00
4.30
561
562
0.474466
TGCATATGGAGGAGGGGAGG
60.474
60.000
4.56
0.00
0.00
4.30
562
563
1.204113
GCATATGGAGGAGGGGAGGG
61.204
65.000
4.56
0.00
0.00
4.30
563
564
0.548682
CATATGGAGGAGGGGAGGGG
60.549
65.000
0.00
0.00
0.00
4.79
603
604
9.322769
AGGGAAGTTAGAGAAGAAGTACAAATA
57.677
33.333
0.00
0.00
0.00
1.40
752
974
2.480853
TAGCCCTACACACACGCACG
62.481
60.000
0.00
0.00
0.00
5.34
753
975
2.337170
CCCTACACACACGCACGA
59.663
61.111
0.00
0.00
0.00
4.35
754
976
1.733041
CCCTACACACACGCACGAG
60.733
63.158
0.00
0.00
0.00
4.18
755
977
1.284715
CCTACACACACGCACGAGA
59.715
57.895
0.00
0.00
0.00
4.04
756
978
0.729478
CCTACACACACGCACGAGAG
60.729
60.000
0.00
0.00
0.00
3.20
891
1116
0.853586
TCCCCAAACCCTAGCCCAAT
60.854
55.000
0.00
0.00
0.00
3.16
982
1207
6.755607
TCACTCTACCTCTATATACATACGCG
59.244
42.308
3.53
3.53
0.00
6.01
1087
1312
2.419198
CCAGGCTTCGATCCTCCG
59.581
66.667
3.96
0.00
0.00
4.63
1105
1330
4.715523
CCTTTTCTCCGGCCGGCA
62.716
66.667
39.89
25.26
34.68
5.69
1142
1367
2.051971
TCGTCGACGACCAACACG
60.052
61.111
34.97
8.94
44.22
4.49
1302
1527
3.670377
GTGGGTGAAACTGCCGGC
61.670
66.667
22.73
22.73
36.74
6.13
1310
1535
0.876342
GAAACTGCCGGCCTATCTCG
60.876
60.000
26.77
5.80
0.00
4.04
1458
1686
2.335316
ACGCACCTTGGTTCAGTTTA
57.665
45.000
0.00
0.00
0.00
2.01
1459
1687
2.858745
ACGCACCTTGGTTCAGTTTAT
58.141
42.857
0.00
0.00
0.00
1.40
1569
1801
3.196685
CCTTCCTCGAGGGGAATGATATC
59.803
52.174
30.80
0.00
43.44
1.63
1657
1913
7.448748
AATTATGCCTCGTTAGTGAGTTTTT
57.551
32.000
0.00
0.00
34.04
1.94
1672
1928
8.068892
AGTGAGTTTTTGTGTTATACCCAAAA
57.931
30.769
0.00
0.00
36.56
2.44
1725
1981
2.157668
GTGCACGATGACGAGTTGAATT
59.842
45.455
0.00
0.00
42.66
2.17
1733
1989
5.386323
CGATGACGAGTTGAATTTGTTTTGC
60.386
40.000
0.00
0.00
42.66
3.68
1763
2019
7.287927
ACCTATATAGTTCTCTTGCTGTGCTTA
59.712
37.037
8.92
0.00
0.00
3.09
1978
2238
7.667557
CAGTTCGGAATTAGTTATATCCCTGA
58.332
38.462
0.00
0.00
0.00
3.86
2054
2397
7.478322
CATGACTACTAGCTTGCAAAATTCAT
58.522
34.615
0.00
0.00
0.00
2.57
2077
2420
4.280425
TGAACAAGGTGAAATTAGCATGCA
59.720
37.500
21.98
0.00
0.00
3.96
2204
2549
5.390387
AGGTAAAGGGAAGCAACAACATAA
58.610
37.500
0.00
0.00
0.00
1.90
2213
2558
5.924254
GGAAGCAACAACATAACTAAAACCC
59.076
40.000
0.00
0.00
0.00
4.11
2234
2579
7.081857
ACCCTGTACAGTTCCTTAATGTAAA
57.918
36.000
21.18
0.00
31.61
2.01
2286
2641
6.092670
GCAACACTGAGACAGCATTAATTAGA
59.907
38.462
0.00
0.00
34.37
2.10
2455
2816
5.677091
GCAGGTTGATGCAACTAAATCGATT
60.677
40.000
4.39
4.39
45.77
3.34
2533
2894
6.950545
TGTAATTACTCGCCCGATTAATTTG
58.049
36.000
22.26
1.62
39.25
2.32
2536
2897
2.285977
ACTCGCCCGATTAATTTGTCC
58.714
47.619
0.00
0.00
0.00
4.02
2558
2919
5.943416
TCCCACAAATCCTACAACATTACAG
59.057
40.000
0.00
0.00
0.00
2.74
2567
2928
9.712305
AATCCTACAACATTACAGTGCTATATC
57.288
33.333
0.00
0.00
0.00
1.63
2613
2974
6.509418
TTGCACTACTTAACCATGAATTCC
57.491
37.500
2.27
0.00
0.00
3.01
2668
3048
6.467047
CGAATTCTTCCTTCGTCAATGAATTG
59.533
38.462
3.52
0.00
40.36
2.32
2724
3108
4.693283
TGCTAGAATGTATTTCCCTGACG
58.307
43.478
0.00
0.00
34.67
4.35
2731
3115
4.274602
TGTATTTCCCTGACGTGCTAAA
57.725
40.909
0.00
0.00
0.00
1.85
2845
3229
1.579429
GATCAACAAGCGGCCGTTT
59.421
52.632
28.70
25.59
0.00
3.60
2953
3337
1.148310
CTGACAACGCCGTCAAGAAT
58.852
50.000
8.64
0.00
44.97
2.40
3206
3593
1.359459
CTACGGCGCTTCAGGAAACC
61.359
60.000
6.90
0.00
0.00
3.27
3241
3628
3.015675
AGGTACAGTAGCTACCTGGAC
57.984
52.381
20.31
20.93
42.15
4.02
3346
3733
4.864334
GGCGGCCCTGACCATCAG
62.864
72.222
8.12
0.00
43.91
2.90
3376
3763
4.784427
GGATTACCATGTCGACGGCGAT
62.784
54.545
20.29
1.64
41.55
4.58
3591
3978
1.473677
GCATGCACTGTTTATGGCAGA
59.526
47.619
14.21
0.00
39.95
4.26
3632
4026
9.671279
TTAATTAGAACTGTGATGATCATGTGT
57.329
29.630
14.30
3.46
0.00
3.72
3634
4028
9.671279
AATTAGAACTGTGATGATCATGTGTAA
57.329
29.630
14.30
7.08
0.00
2.41
3635
4029
9.842775
ATTAGAACTGTGATGATCATGTGTAAT
57.157
29.630
14.30
8.82
0.00
1.89
3636
4030
7.549615
AGAACTGTGATGATCATGTGTAATG
57.450
36.000
14.30
0.00
0.00
1.90
3637
4031
7.108194
AGAACTGTGATGATCATGTGTAATGT
58.892
34.615
14.30
0.10
0.00
2.71
3638
4032
6.673154
ACTGTGATGATCATGTGTAATGTG
57.327
37.500
14.30
0.00
0.00
3.21
3754
4148
0.516877
TGTTGTGTGCTAATCGCTGC
59.483
50.000
0.00
0.00
40.11
5.25
3821
4218
4.099419
TGCTAATCACCATCAGACGTGTAT
59.901
41.667
0.00
0.00
0.00
2.29
3851
4249
1.534729
AAAGGCAACAAGATCCCGTC
58.465
50.000
0.00
0.00
41.41
4.79
3926
4425
0.938168
GGTGAATATCGTCGTCCCGC
60.938
60.000
0.00
0.00
0.00
6.13
3981
4480
7.910010
AGGGACTATATATGGCTAAATTACCCA
59.090
37.037
0.00
0.00
36.02
4.51
4068
4570
9.281371
CATAGCCATAAGATCAAGATTTTCTCA
57.719
33.333
0.00
0.00
0.00
3.27
4105
4607
5.052481
TGCATAACTCATGAAAGATCGAGG
58.948
41.667
0.00
0.00
36.69
4.63
4142
4793
9.654663
ACTGACTTGTAATAATAGTCACCTTTC
57.345
33.333
0.00
0.00
42.31
2.62
4421
5073
9.177608
TCCATGATAAAGAATTTTACTGTCTGG
57.822
33.333
0.00
0.00
40.09
3.86
4492
5148
9.921637
CTCTAGAAAGAAAATAGTGTGAAGTCT
57.078
33.333
0.00
0.00
0.00
3.24
4510
5166
6.820152
TGAAGTCTATTCACATGATGGAACTG
59.180
38.462
0.00
0.00
0.00
3.16
4630
5293
7.624706
AATAGACGAGCATGTTAAATAGACG
57.375
36.000
0.00
0.00
0.00
4.18
4738
5401
2.559668
CAGGTTGTTGCAACTCCATGAT
59.440
45.455
30.55
16.80
0.00
2.45
4739
5402
3.758023
CAGGTTGTTGCAACTCCATGATA
59.242
43.478
30.55
11.22
0.00
2.15
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
393
394
3.485463
TCACAGATCAAACGGGACTTT
57.515
42.857
0.00
0.00
0.00
2.66
394
395
3.244561
ACATCACAGATCAAACGGGACTT
60.245
43.478
0.00
0.00
0.00
3.01
395
396
2.303022
ACATCACAGATCAAACGGGACT
59.697
45.455
0.00
0.00
0.00
3.85
398
399
8.601845
TTATATTACATCACAGATCAAACGGG
57.398
34.615
0.00
0.00
0.00
5.28
473
474
1.375523
CCCTGCCCTGTTGTACGTC
60.376
63.158
0.00
0.00
0.00
4.34
521
522
4.539870
CAACGCAAAGACATCATCAACTT
58.460
39.130
0.00
0.00
0.00
2.66
525
526
1.878734
TGCAACGCAAAGACATCATCA
59.121
42.857
0.00
0.00
34.76
3.07
540
541
1.072965
CTCCCCTCCTCCATATGCAAC
59.927
57.143
0.00
0.00
0.00
4.17
546
547
2.421329
CCCCCTCCCCTCCTCCATA
61.421
68.421
0.00
0.00
0.00
2.74
561
562
4.415846
ACTTCCCTAACAATATTCTCCCCC
59.584
45.833
0.00
0.00
0.00
5.40
562
563
5.648330
ACTTCCCTAACAATATTCTCCCC
57.352
43.478
0.00
0.00
0.00
4.81
563
564
8.030913
TCTAACTTCCCTAACAATATTCTCCC
57.969
38.462
0.00
0.00
0.00
4.30
603
604
2.292267
CGGATTACTTCCAGCTGCAAT
58.708
47.619
8.66
1.96
45.78
3.56
752
974
4.164221
TCTCTCTTTCTCCCTCTCTCTCTC
59.836
50.000
0.00
0.00
0.00
3.20
753
975
4.111577
TCTCTCTTTCTCCCTCTCTCTCT
58.888
47.826
0.00
0.00
0.00
3.10
754
976
4.503714
TCTCTCTTTCTCCCTCTCTCTC
57.496
50.000
0.00
0.00
0.00
3.20
755
977
4.230502
ACATCTCTCTTTCTCCCTCTCTCT
59.769
45.833
0.00
0.00
0.00
3.10
756
978
4.536765
ACATCTCTCTTTCTCCCTCTCTC
58.463
47.826
0.00
0.00
0.00
3.20
891
1116
1.134936
ACGCAGGTAATGACACGCATA
60.135
47.619
0.00
0.00
35.78
3.14
982
1207
0.610232
AATGGCCACAAGTCAGAGGC
60.610
55.000
8.16
0.00
43.46
4.70
1156
1381
2.032681
ACAAGGACGCTGGCTTCC
59.967
61.111
9.67
9.67
34.93
3.46
1163
1388
4.379243
CTCGGGCACAAGGACGCT
62.379
66.667
0.00
0.00
0.00
5.07
1164
1389
4.373116
TCTCGGGCACAAGGACGC
62.373
66.667
0.00
0.00
0.00
5.19
1302
1527
3.433957
AGATCGACGATCAACGAGATAGG
59.566
47.826
32.97
0.00
45.77
2.57
1310
1535
3.250744
TGGAAACAGATCGACGATCAAC
58.749
45.455
32.97
19.99
41.12
3.18
1362
1587
6.542005
TCAAGGTTATATGCATCAACGTCATT
59.458
34.615
0.19
0.49
0.00
2.57
1511
1741
3.516615
TGGCACAAACAGCTAAAACAAC
58.483
40.909
0.00
0.00
31.92
3.32
1569
1801
0.598065
AAAAACTAAGCCCAGCGCAG
59.402
50.000
11.47
0.00
41.38
5.18
1640
1892
5.479716
AACACAAAAACTCACTAACGAGG
57.520
39.130
0.00
0.00
37.34
4.63
1672
1928
9.314321
CGAACAACTTATATGATCCTACTGTTT
57.686
33.333
0.00
0.00
0.00
2.83
1702
1958
1.070821
CAACTCGTCATCGTGCACAT
58.929
50.000
18.64
6.80
38.33
3.21
1725
1981
7.558604
AGAACTATATAGGTACCGCAAAACAA
58.441
34.615
14.25
0.00
0.00
2.83
1733
1989
6.207025
ACAGCAAGAGAACTATATAGGTACCG
59.793
42.308
14.25
0.00
0.00
4.02
1937
2197
7.209471
TCCGAACTGCTAAAATTTTGTATGT
57.791
32.000
13.76
4.95
0.00
2.29
1938
2198
8.687824
ATTCCGAACTGCTAAAATTTTGTATG
57.312
30.769
13.76
4.37
0.00
2.39
1940
2200
9.834628
CTAATTCCGAACTGCTAAAATTTTGTA
57.165
29.630
13.76
2.92
0.00
2.41
1941
2201
8.357402
ACTAATTCCGAACTGCTAAAATTTTGT
58.643
29.630
13.76
0.00
0.00
2.83
1953
2213
7.667557
TCAGGGATATAACTAATTCCGAACTG
58.332
38.462
0.00
0.00
0.00
3.16
2023
2283
5.427378
TGCAAGCTAGTAGTCATGCAAATA
58.573
37.500
18.21
2.62
40.47
1.40
2054
2397
4.280425
TGCATGCTAATTTCACCTTGTTCA
59.720
37.500
20.33
0.00
0.00
3.18
2077
2420
9.692325
AAGAGGAGATTTAGAATAAAGTTGCAT
57.308
29.630
0.00
0.00
0.00
3.96
2204
2549
5.641789
AAGGAACTGTACAGGGTTTTAGT
57.358
39.130
26.12
0.90
40.86
2.24
2234
2579
0.690762
AACACACCCTACCGCATCTT
59.309
50.000
0.00
0.00
0.00
2.40
2286
2641
1.745087
CGTGCTTTGCCTGGTGATTAT
59.255
47.619
0.00
0.00
0.00
1.28
2455
2816
5.392165
GGCACATAAAGGTTATTGCGTACAA
60.392
40.000
0.00
0.00
40.87
2.41
2533
2894
5.708230
TGTAATGTTGTAGGATTTGTGGGAC
59.292
40.000
0.00
0.00
0.00
4.46
2536
2897
6.611381
CACTGTAATGTTGTAGGATTTGTGG
58.389
40.000
0.00
0.00
0.00
4.17
2558
2919
5.986135
AGGACGTGAAATTCTGATATAGCAC
59.014
40.000
0.00
0.00
0.00
4.40
2567
2928
3.624326
TTGCAAGGACGTGAAATTCTG
57.376
42.857
0.00
0.00
0.00
3.02
2653
3033
4.408993
TCAGTGCAATTCATTGACGAAG
57.591
40.909
3.60
0.00
40.14
3.79
2658
3038
9.878667
AAATCATAATTCAGTGCAATTCATTGA
57.121
25.926
3.60
7.01
39.29
2.57
2763
3147
8.301002
TCTTGCCTACAATTAATTACCACAAAC
58.699
33.333
0.00
0.00
34.61
2.93
2845
3229
0.106619
GCTCCTCCTCTTCCTCCGTA
60.107
60.000
0.00
0.00
0.00
4.02
2884
3268
4.141144
CACTTGTTGCCGTGGACT
57.859
55.556
0.00
0.00
0.00
3.85
2953
3337
2.335011
CTGACGACGTGCCAGTGA
59.665
61.111
4.58
0.00
0.00
3.41
3273
3660
1.045911
GGAGGAGAAGGCGATGGAGT
61.046
60.000
0.00
0.00
0.00
3.85
3346
3733
2.945668
GACATGGTAATCCTTCCTGTGC
59.054
50.000
0.00
0.00
34.23
4.57
3376
3763
3.269538
TCCTTCGTTTTCAGTGGTTCA
57.730
42.857
0.00
0.00
0.00
3.18
3379
3766
1.880027
GCATCCTTCGTTTTCAGTGGT
59.120
47.619
0.00
0.00
0.00
4.16
3486
3873
0.976641
TCGACAAGTTGATGGAGGCT
59.023
50.000
10.54
0.00
0.00
4.58
3632
4026
7.326968
TCATGTTCAACAGTTCAACACATTA
57.673
32.000
4.69
0.00
32.96
1.90
3633
4027
6.206395
TCATGTTCAACAGTTCAACACATT
57.794
33.333
4.69
0.00
32.96
2.71
3634
4028
5.833406
TCATGTTCAACAGTTCAACACAT
57.167
34.783
4.69
0.00
32.96
3.21
3635
4029
5.356470
TGATCATGTTCAACAGTTCAACACA
59.644
36.000
4.69
0.00
32.96
3.72
3636
4030
5.820131
TGATCATGTTCAACAGTTCAACAC
58.180
37.500
4.69
0.00
32.96
3.32
3637
4031
6.440436
CATGATCATGTTCAACAGTTCAACA
58.560
36.000
24.87
5.09
34.61
3.33
3638
4032
6.922980
CATGATCATGTTCAACAGTTCAAC
57.077
37.500
24.87
0.00
34.23
3.18
3754
4148
6.487103
GTCTCAACAATCGGCCTTTAATAAG
58.513
40.000
0.00
0.00
0.00
1.73
3861
4259
3.435566
CATGTGAATGTGATCTTGCTGC
58.564
45.455
0.00
0.00
0.00
5.25
3862
4260
3.692593
TCCATGTGAATGTGATCTTGCTG
59.307
43.478
0.00
0.00
0.00
4.41
3864
4262
4.707030
TTCCATGTGAATGTGATCTTGC
57.293
40.909
0.00
0.00
0.00
4.01
3865
4263
7.148205
TGTGTATTCCATGTGAATGTGATCTTG
60.148
37.037
15.59
0.00
43.57
3.02
3867
4265
6.417258
TGTGTATTCCATGTGAATGTGATCT
58.583
36.000
15.59
0.00
43.57
2.75
3868
4266
6.682423
TGTGTATTCCATGTGAATGTGATC
57.318
37.500
15.59
0.00
43.57
2.92
3992
4494
8.758633
TCTAAGTCGATTTAGCCATAAATAGC
57.241
34.615
19.73
0.00
40.83
2.97
3997
4499
8.038944
ACTGTTTCTAAGTCGATTTAGCCATAA
58.961
33.333
19.73
8.61
32.01
1.90
4136
4787
6.981722
AGCGATTTTGTTATTTCAGAAAGGT
58.018
32.000
1.28
0.00
0.00
3.50
4421
5073
8.818057
GTCAATGTAGATTTGTCCATGTACTAC
58.182
37.037
0.00
0.00
0.00
2.73
4492
5148
5.438833
TCATGCAGTTCCATCATGTGAATA
58.561
37.500
0.00
0.00
38.82
1.75
4494
5150
3.688235
TCATGCAGTTCCATCATGTGAA
58.312
40.909
0.00
0.00
38.82
3.18
4500
5156
2.557924
GGTTGTTCATGCAGTTCCATCA
59.442
45.455
0.00
0.00
0.00
3.07
4613
5276
5.235186
ACATGCTCGTCTATTTAACATGCTC
59.765
40.000
0.00
0.00
37.52
4.26
4614
5277
5.118990
ACATGCTCGTCTATTTAACATGCT
58.881
37.500
0.00
0.00
37.52
3.79
4615
5278
5.409643
ACATGCTCGTCTATTTAACATGC
57.590
39.130
0.00
0.00
37.52
4.06
4616
5279
9.425893
CTTTAACATGCTCGTCTATTTAACATG
57.574
33.333
0.00
0.00
39.38
3.21
4617
5280
9.162764
ACTTTAACATGCTCGTCTATTTAACAT
57.837
29.630
0.00
0.00
0.00
2.71
4618
5281
8.542497
ACTTTAACATGCTCGTCTATTTAACA
57.458
30.769
0.00
0.00
0.00
2.41
4621
5284
9.309516
CCTTACTTTAACATGCTCGTCTATTTA
57.690
33.333
0.00
0.00
0.00
1.40
4622
5285
7.822822
ACCTTACTTTAACATGCTCGTCTATTT
59.177
33.333
0.00
0.00
0.00
1.40
4623
5286
7.328737
ACCTTACTTTAACATGCTCGTCTATT
58.671
34.615
0.00
0.00
0.00
1.73
4624
5287
6.875076
ACCTTACTTTAACATGCTCGTCTAT
58.125
36.000
0.00
0.00
0.00
1.98
4625
5288
6.276832
ACCTTACTTTAACATGCTCGTCTA
57.723
37.500
0.00
0.00
0.00
2.59
4626
5289
5.148651
ACCTTACTTTAACATGCTCGTCT
57.851
39.130
0.00
0.00
0.00
4.18
4627
5290
8.638685
TTATACCTTACTTTAACATGCTCGTC
57.361
34.615
0.00
0.00
0.00
4.20
4628
5291
8.255905
ACTTATACCTTACTTTAACATGCTCGT
58.744
33.333
0.00
0.00
0.00
4.18
4629
5292
8.644318
ACTTATACCTTACTTTAACATGCTCG
57.356
34.615
0.00
0.00
0.00
5.03
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.