Multiple sequence alignment - TraesCS4A01G209700
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4A01G209700 | chr4A | 100.000 | 3485 | 0 | 0 | 1 | 3485 | 503613855 | 503610371 | 0.000000e+00 | 6436 |
1 | TraesCS4A01G209700 | chr4B | 94.552 | 2588 | 123 | 11 | 907 | 3485 | 128022499 | 128019921 | 0.000000e+00 | 3982 |
2 | TraesCS4A01G209700 | chr4B | 95.706 | 489 | 19 | 2 | 421 | 909 | 128022944 | 128022458 | 0.000000e+00 | 785 |
3 | TraesCS4A01G209700 | chr4B | 81.606 | 685 | 91 | 14 | 1770 | 2446 | 128023792 | 128023135 | 5.120000e-148 | 534 |
4 | TraesCS4A01G209700 | chr4B | 82.996 | 247 | 39 | 2 | 1003 | 1246 | 128024037 | 128023791 | 1.630000e-53 | 220 |
5 | TraesCS4A01G209700 | chr4D | 94.792 | 1920 | 77 | 11 | 905 | 2815 | 91221076 | 91219171 | 0.000000e+00 | 2970 |
6 | TraesCS4A01G209700 | chr4D | 91.848 | 552 | 31 | 7 | 361 | 909 | 91221571 | 91221031 | 0.000000e+00 | 758 |
7 | TraesCS4A01G209700 | chr4D | 81.647 | 692 | 96 | 18 | 1770 | 2458 | 91222393 | 91221730 | 2.370000e-151 | 545 |
8 | TraesCS4A01G209700 | chr5A | 81.725 | 1461 | 236 | 24 | 999 | 2445 | 599220123 | 599218680 | 0.000000e+00 | 1190 |
9 | TraesCS4A01G209700 | chr5A | 95.014 | 361 | 15 | 3 | 1 | 359 | 74671088 | 74670729 | 6.530000e-157 | 564 |
10 | TraesCS4A01G209700 | chr5D | 81.327 | 1462 | 246 | 18 | 999 | 2445 | 480477613 | 480476164 | 0.000000e+00 | 1162 |
11 | TraesCS4A01G209700 | chr5D | 94.708 | 359 | 17 | 2 | 1 | 359 | 256182527 | 256182883 | 1.090000e-154 | 556 |
12 | TraesCS4A01G209700 | chr2D | 95.543 | 359 | 14 | 2 | 1 | 359 | 617044704 | 617045060 | 1.090000e-159 | 573 |
13 | TraesCS4A01G209700 | chrUn | 94.737 | 361 | 17 | 2 | 1 | 359 | 161310 | 160950 | 8.450000e-156 | 560 |
14 | TraesCS4A01G209700 | chr1D | 94.737 | 361 | 17 | 2 | 1 | 359 | 18761044 | 18760684 | 8.450000e-156 | 560 |
15 | TraesCS4A01G209700 | chr1D | 94.986 | 359 | 14 | 4 | 1 | 358 | 102156303 | 102156658 | 8.450000e-156 | 560 |
16 | TraesCS4A01G209700 | chr1D | 81.714 | 350 | 52 | 6 | 3146 | 3485 | 31219860 | 31220207 | 7.360000e-72 | 281 |
17 | TraesCS4A01G209700 | chr1D | 75.943 | 424 | 83 | 12 | 3078 | 3485 | 193749121 | 193749541 | 2.120000e-47 | 200 |
18 | TraesCS4A01G209700 | chr3D | 94.722 | 360 | 16 | 3 | 1 | 359 | 373599760 | 373599403 | 1.090000e-154 | 556 |
19 | TraesCS4A01G209700 | chr1A | 94.444 | 360 | 17 | 3 | 1 | 359 | 508209643 | 508210000 | 5.080000e-153 | 551 |
20 | TraesCS4A01G209700 | chr7A | 93.280 | 372 | 23 | 2 | 1 | 371 | 63576712 | 63577082 | 6.580000e-152 | 547 |
21 | TraesCS4A01G209700 | chr7A | 78.063 | 351 | 67 | 8 | 3140 | 3485 | 504236674 | 504237019 | 2.720000e-51 | 213 |
22 | TraesCS4A01G209700 | chr7D | 81.538 | 325 | 49 | 7 | 3166 | 3485 | 235824060 | 235823742 | 1.240000e-64 | 257 |
23 | TraesCS4A01G209700 | chr2B | 76.376 | 436 | 96 | 7 | 3033 | 3463 | 603380896 | 603380463 | 9.730000e-56 | 228 |
24 | TraesCS4A01G209700 | chr5B | 77.005 | 374 | 80 | 6 | 3115 | 3485 | 577222383 | 577222013 | 3.520000e-50 | 209 |
25 | TraesCS4A01G209700 | chr3A | 74.686 | 478 | 98 | 13 | 3027 | 3485 | 684311302 | 684310829 | 1.280000e-44 | 191 |
26 | TraesCS4A01G209700 | chr3B | 76.638 | 351 | 74 | 7 | 3136 | 3483 | 160354673 | 160354328 | 1.650000e-43 | 187 |
27 | TraesCS4A01G209700 | chr6D | 79.352 | 247 | 48 | 3 | 3027 | 3270 | 288560325 | 288560571 | 1.660000e-38 | 171 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4A01G209700 | chr4A | 503610371 | 503613855 | 3484 | True | 6436.000000 | 6436 | 100.000 | 1 | 3485 | 1 | chr4A.!!$R1 | 3484 |
1 | TraesCS4A01G209700 | chr4B | 128019921 | 128024037 | 4116 | True | 1380.250000 | 3982 | 88.715 | 421 | 3485 | 4 | chr4B.!!$R1 | 3064 |
2 | TraesCS4A01G209700 | chr4D | 91219171 | 91222393 | 3222 | True | 1424.333333 | 2970 | 89.429 | 361 | 2815 | 3 | chr4D.!!$R1 | 2454 |
3 | TraesCS4A01G209700 | chr5A | 599218680 | 599220123 | 1443 | True | 1190.000000 | 1190 | 81.725 | 999 | 2445 | 1 | chr5A.!!$R2 | 1446 |
4 | TraesCS4A01G209700 | chr5D | 480476164 | 480477613 | 1449 | True | 1162.000000 | 1162 | 81.327 | 999 | 2445 | 1 | chr5D.!!$R1 | 1446 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
898 | 1614 | 0.111253 | CCCTGGGTTGCTGTCTTTCT | 59.889 | 55.0 | 3.97 | 0.0 | 0.00 | 2.52 | F |
1209 | 1929 | 0.615331 | TGAAGACACTCATGGAGGGC | 59.385 | 55.0 | 0.00 | 0.0 | 36.37 | 5.19 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1890 | 2610 | 0.605860 | CTTGCTCTGCTCTGCCTGTT | 60.606 | 55.0 | 0.0 | 0.0 | 0.00 | 3.16 | R |
2686 | 3415 | 0.796927 | GCAGTTTCCTTACACGAGGC | 59.203 | 55.0 | 0.0 | 0.0 | 36.71 | 4.70 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
55 | 56 | 9.995003 | TTCTGAAATATTTTTGTGGCATACTTT | 57.005 | 25.926 | 1.43 | 0.00 | 0.00 | 2.66 |
64 | 65 | 9.777297 | ATTTTTGTGGCATACTTTAAGAAATGT | 57.223 | 25.926 | 0.00 | 0.00 | 0.00 | 2.71 |
66 | 67 | 9.606631 | TTTTGTGGCATACTTTAAGAAATGTTT | 57.393 | 25.926 | 0.00 | 0.00 | 0.00 | 2.83 |
67 | 68 | 8.586570 | TTGTGGCATACTTTAAGAAATGTTTG | 57.413 | 30.769 | 0.00 | 0.00 | 0.00 | 2.93 |
68 | 69 | 7.721402 | TGTGGCATACTTTAAGAAATGTTTGT | 58.279 | 30.769 | 0.00 | 0.00 | 29.91 | 2.83 |
71 | 72 | 8.200792 | TGGCATACTTTAAGAAATGTTTGTTGT | 58.799 | 29.630 | 0.00 | 0.00 | 29.91 | 3.32 |
72 | 73 | 8.487176 | GGCATACTTTAAGAAATGTTTGTTGTG | 58.513 | 33.333 | 0.00 | 0.00 | 29.91 | 3.33 |
73 | 74 | 8.003784 | GCATACTTTAAGAAATGTTTGTTGTGC | 58.996 | 33.333 | 0.00 | 0.00 | 29.91 | 4.57 |
74 | 75 | 9.029243 | CATACTTTAAGAAATGTTTGTTGTGCA | 57.971 | 29.630 | 0.00 | 0.00 | 0.00 | 4.57 |
76 | 77 | 7.908230 | ACTTTAAGAAATGTTTGTTGTGCATG | 58.092 | 30.769 | 0.00 | 0.00 | 0.00 | 4.06 |
77 | 78 | 4.799419 | AAGAAATGTTTGTTGTGCATGC | 57.201 | 36.364 | 11.82 | 11.82 | 0.00 | 4.06 |
80 | 81 | 4.634883 | AGAAATGTTTGTTGTGCATGCAAA | 59.365 | 33.333 | 24.58 | 15.92 | 0.00 | 3.68 |
81 | 82 | 4.959596 | AATGTTTGTTGTGCATGCAAAA | 57.040 | 31.818 | 24.58 | 21.90 | 34.47 | 2.44 |
82 | 83 | 4.959596 | ATGTTTGTTGTGCATGCAAAAA | 57.040 | 31.818 | 24.69 | 17.76 | 34.47 | 1.94 |
83 | 84 | 4.959596 | TGTTTGTTGTGCATGCAAAAAT | 57.040 | 31.818 | 24.69 | 0.00 | 34.47 | 1.82 |
85 | 86 | 5.330295 | TGTTTGTTGTGCATGCAAAAATTC | 58.670 | 33.333 | 24.69 | 13.18 | 34.47 | 2.17 |
86 | 87 | 3.856104 | TGTTGTGCATGCAAAAATTCG | 57.144 | 38.095 | 24.69 | 0.00 | 0.00 | 3.34 |
87 | 88 | 3.193263 | TGTTGTGCATGCAAAAATTCGT | 58.807 | 36.364 | 24.69 | 0.00 | 0.00 | 3.85 |
88 | 89 | 3.244814 | TGTTGTGCATGCAAAAATTCGTC | 59.755 | 39.130 | 24.69 | 11.76 | 0.00 | 4.20 |
93 | 94 | 4.150274 | GTGCATGCAAAAATTCGTCATGAA | 59.850 | 37.500 | 24.58 | 0.00 | 41.81 | 2.57 |
94 | 95 | 4.748600 | TGCATGCAAAAATTCGTCATGAAA | 59.251 | 33.333 | 20.30 | 0.00 | 40.71 | 2.69 |
95 | 96 | 5.408909 | TGCATGCAAAAATTCGTCATGAAAT | 59.591 | 32.000 | 20.30 | 0.00 | 40.71 | 2.17 |
110 | 111 | 2.806434 | TGAAATGACATGGGTGGAAGG | 58.194 | 47.619 | 0.00 | 0.00 | 0.00 | 3.46 |
111 | 112 | 1.478105 | GAAATGACATGGGTGGAAGGC | 59.522 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
112 | 113 | 0.409092 | AATGACATGGGTGGAAGGCA | 59.591 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
114 | 115 | 0.323633 | TGACATGGGTGGAAGGCATG | 60.324 | 55.000 | 0.00 | 0.00 | 0.00 | 4.06 |
117 | 118 | 0.258484 | CATGGGTGGAAGGCATGGTA | 59.742 | 55.000 | 0.00 | 0.00 | 0.00 | 3.25 |
118 | 119 | 1.006813 | ATGGGTGGAAGGCATGGTAA | 58.993 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
119 | 120 | 0.780637 | TGGGTGGAAGGCATGGTAAA | 59.219 | 50.000 | 0.00 | 0.00 | 0.00 | 2.01 |
120 | 121 | 1.148027 | TGGGTGGAAGGCATGGTAAAA | 59.852 | 47.619 | 0.00 | 0.00 | 0.00 | 1.52 |
121 | 122 | 2.252714 | GGGTGGAAGGCATGGTAAAAA | 58.747 | 47.619 | 0.00 | 0.00 | 0.00 | 1.94 |
162 | 163 | 9.180678 | CTCTAAAAATGTTACTTTCAAACGCAT | 57.819 | 29.630 | 0.00 | 0.00 | 0.00 | 4.73 |
163 | 164 | 9.522804 | TCTAAAAATGTTACTTTCAAACGCATT | 57.477 | 25.926 | 0.00 | 0.00 | 0.00 | 3.56 |
166 | 167 | 8.819152 | AAAATGTTACTTTCAAACGCATTTTG | 57.181 | 26.923 | 10.31 | 2.03 | 45.38 | 2.44 |
167 | 168 | 5.957910 | TGTTACTTTCAAACGCATTTTGG | 57.042 | 34.783 | 7.70 | 0.00 | 44.30 | 3.28 |
169 | 170 | 5.746245 | TGTTACTTTCAAACGCATTTTGGAG | 59.254 | 36.000 | 7.70 | 8.42 | 44.30 | 3.86 |
170 | 171 | 3.123050 | ACTTTCAAACGCATTTTGGAGC | 58.877 | 40.909 | 7.70 | 0.00 | 44.30 | 4.70 |
173 | 174 | 2.229792 | TCAAACGCATTTTGGAGCTCT | 58.770 | 42.857 | 14.64 | 0.00 | 44.30 | 4.09 |
174 | 175 | 2.030893 | TCAAACGCATTTTGGAGCTCTG | 60.031 | 45.455 | 14.64 | 4.50 | 44.30 | 3.35 |
176 | 177 | 2.119801 | ACGCATTTTGGAGCTCTGAT | 57.880 | 45.000 | 14.64 | 0.00 | 0.00 | 2.90 |
177 | 178 | 2.440409 | ACGCATTTTGGAGCTCTGATT | 58.560 | 42.857 | 14.64 | 0.00 | 0.00 | 2.57 |
178 | 179 | 2.821969 | ACGCATTTTGGAGCTCTGATTT | 59.178 | 40.909 | 14.64 | 0.00 | 0.00 | 2.17 |
183 | 184 | 5.467735 | GCATTTTGGAGCTCTGATTTTGTTT | 59.532 | 36.000 | 14.64 | 0.00 | 0.00 | 2.83 |
203 | 204 | 0.827368 | TTTTTGGCCACAACCTCCAC | 59.173 | 50.000 | 3.88 | 0.00 | 36.06 | 4.02 |
204 | 205 | 1.045911 | TTTTGGCCACAACCTCCACC | 61.046 | 55.000 | 3.88 | 0.00 | 36.06 | 4.61 |
205 | 206 | 2.230189 | TTTGGCCACAACCTCCACCA | 62.230 | 55.000 | 3.88 | 0.00 | 36.06 | 4.17 |
207 | 208 | 1.228862 | GGCCACAACCTCCACCAAT | 60.229 | 57.895 | 0.00 | 0.00 | 0.00 | 3.16 |
209 | 210 | 0.827507 | GCCACAACCTCCACCAATGT | 60.828 | 55.000 | 0.00 | 0.00 | 0.00 | 2.71 |
210 | 211 | 0.961019 | CCACAACCTCCACCAATGTG | 59.039 | 55.000 | 0.00 | 0.00 | 42.39 | 3.21 |
227 | 228 | 5.764192 | CCAATGTGGTTTGGTGATGAAATTT | 59.236 | 36.000 | 0.00 | 0.00 | 41.09 | 1.82 |
228 | 229 | 6.262720 | CCAATGTGGTTTGGTGATGAAATTTT | 59.737 | 34.615 | 0.00 | 0.00 | 41.09 | 1.82 |
229 | 230 | 6.864360 | ATGTGGTTTGGTGATGAAATTTTG | 57.136 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
230 | 231 | 4.574013 | TGTGGTTTGGTGATGAAATTTTGC | 59.426 | 37.500 | 0.00 | 0.00 | 0.00 | 3.68 |
231 | 232 | 4.574013 | GTGGTTTGGTGATGAAATTTTGCA | 59.426 | 37.500 | 0.00 | 0.00 | 0.00 | 4.08 |
232 | 233 | 5.239087 | GTGGTTTGGTGATGAAATTTTGCAT | 59.761 | 36.000 | 0.00 | 0.00 | 0.00 | 3.96 |
233 | 234 | 5.238868 | TGGTTTGGTGATGAAATTTTGCATG | 59.761 | 36.000 | 0.00 | 0.00 | 0.00 | 4.06 |
235 | 236 | 4.004196 | TGGTGATGAAATTTTGCATGCA | 57.996 | 36.364 | 18.46 | 18.46 | 0.00 | 3.96 |
236 | 237 | 3.747010 | TGGTGATGAAATTTTGCATGCAC | 59.253 | 39.130 | 22.58 | 8.45 | 0.00 | 4.57 |
237 | 238 | 3.747010 | GGTGATGAAATTTTGCATGCACA | 59.253 | 39.130 | 22.58 | 12.14 | 30.86 | 4.57 |
239 | 240 | 5.141568 | GTGATGAAATTTTGCATGCACAAC | 58.858 | 37.500 | 22.58 | 13.02 | 0.00 | 3.32 |
240 | 241 | 4.814771 | TGATGAAATTTTGCATGCACAACA | 59.185 | 33.333 | 22.58 | 15.52 | 0.00 | 3.33 |
241 | 242 | 5.296035 | TGATGAAATTTTGCATGCACAACAA | 59.704 | 32.000 | 22.58 | 9.42 | 0.00 | 2.83 |
242 | 243 | 5.556355 | TGAAATTTTGCATGCACAACAAA | 57.444 | 30.435 | 22.58 | 18.36 | 0.00 | 2.83 |
245 | 246 | 5.502153 | AATTTTGCATGCACAACAAACAT | 57.498 | 30.435 | 22.58 | 8.21 | 33.29 | 2.71 |
246 | 247 | 4.959596 | TTTTGCATGCACAACAAACATT | 57.040 | 31.818 | 22.58 | 0.00 | 33.29 | 2.71 |
247 | 248 | 4.959596 | TTTGCATGCACAACAAACATTT | 57.040 | 31.818 | 22.58 | 0.00 | 0.00 | 2.32 |
249 | 250 | 3.794717 | TGCATGCACAACAAACATTTCT | 58.205 | 36.364 | 18.46 | 0.00 | 0.00 | 2.52 |
250 | 251 | 4.190001 | TGCATGCACAACAAACATTTCTT | 58.810 | 34.783 | 18.46 | 0.00 | 0.00 | 2.52 |
251 | 252 | 5.354767 | TGCATGCACAACAAACATTTCTTA | 58.645 | 33.333 | 18.46 | 0.00 | 0.00 | 2.10 |
252 | 253 | 5.814188 | TGCATGCACAACAAACATTTCTTAA | 59.186 | 32.000 | 18.46 | 0.00 | 0.00 | 1.85 |
253 | 254 | 6.314648 | TGCATGCACAACAAACATTTCTTAAA | 59.685 | 30.769 | 18.46 | 0.00 | 0.00 | 1.52 |
254 | 255 | 6.847289 | GCATGCACAACAAACATTTCTTAAAG | 59.153 | 34.615 | 14.21 | 0.00 | 0.00 | 1.85 |
255 | 256 | 7.465781 | GCATGCACAACAAACATTTCTTAAAGT | 60.466 | 33.333 | 14.21 | 0.00 | 0.00 | 2.66 |
256 | 257 | 9.029243 | CATGCACAACAAACATTTCTTAAAGTA | 57.971 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
257 | 258 | 9.762933 | ATGCACAACAAACATTTCTTAAAGTAT | 57.237 | 25.926 | 0.00 | 0.00 | 0.00 | 2.12 |
258 | 259 | 9.029243 | TGCACAACAAACATTTCTTAAAGTATG | 57.971 | 29.630 | 0.00 | 0.00 | 0.00 | 2.39 |
259 | 260 | 8.003784 | GCACAACAAACATTTCTTAAAGTATGC | 58.996 | 33.333 | 0.00 | 0.00 | 0.00 | 3.14 |
260 | 261 | 8.487176 | CACAACAAACATTTCTTAAAGTATGCC | 58.513 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
261 | 262 | 8.200792 | ACAACAAACATTTCTTAAAGTATGCCA | 58.799 | 29.630 | 0.00 | 0.00 | 0.00 | 4.92 |
262 | 263 | 8.487176 | CAACAAACATTTCTTAAAGTATGCCAC | 58.513 | 33.333 | 0.00 | 0.00 | 0.00 | 5.01 |
263 | 264 | 7.721402 | ACAAACATTTCTTAAAGTATGCCACA | 58.279 | 30.769 | 0.00 | 0.00 | 0.00 | 4.17 |
264 | 265 | 8.200792 | ACAAACATTTCTTAAAGTATGCCACAA | 58.799 | 29.630 | 0.00 | 0.00 | 0.00 | 3.33 |
265 | 266 | 9.039870 | CAAACATTTCTTAAAGTATGCCACAAA | 57.960 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
266 | 267 | 9.606631 | AAACATTTCTTAAAGTATGCCACAAAA | 57.393 | 25.926 | 0.00 | 0.00 | 0.00 | 2.44 |
267 | 268 | 9.606631 | AACATTTCTTAAAGTATGCCACAAAAA | 57.393 | 25.926 | 0.00 | 0.00 | 0.00 | 1.94 |
327 | 328 | 7.553881 | TTATTTTACTGTTCATAGCAGGAGC | 57.446 | 36.000 | 0.00 | 0.00 | 38.22 | 4.70 |
328 | 329 | 4.551702 | TTTACTGTTCATAGCAGGAGCA | 57.448 | 40.909 | 0.00 | 0.00 | 45.49 | 4.26 |
330 | 331 | 5.869649 | TTACTGTTCATAGCAGGAGCATA | 57.130 | 39.130 | 0.00 | 0.00 | 45.49 | 3.14 |
331 | 332 | 4.970860 | ACTGTTCATAGCAGGAGCATAT | 57.029 | 40.909 | 0.00 | 0.00 | 45.49 | 1.78 |
332 | 333 | 4.639334 | ACTGTTCATAGCAGGAGCATATG | 58.361 | 43.478 | 0.00 | 0.00 | 45.49 | 1.78 |
333 | 334 | 4.346127 | ACTGTTCATAGCAGGAGCATATGA | 59.654 | 41.667 | 6.97 | 0.00 | 45.49 | 2.15 |
334 | 335 | 4.891260 | TGTTCATAGCAGGAGCATATGAG | 58.109 | 43.478 | 6.97 | 0.00 | 45.49 | 2.90 |
335 | 336 | 3.606595 | TCATAGCAGGAGCATATGAGC | 57.393 | 47.619 | 6.97 | 1.86 | 45.49 | 4.26 |
347 | 348 | 3.963374 | AGCATATGAGCTCAGGTGTAGAA | 59.037 | 43.478 | 22.96 | 0.00 | 42.18 | 2.10 |
348 | 349 | 4.406972 | AGCATATGAGCTCAGGTGTAGAAA | 59.593 | 41.667 | 22.96 | 0.00 | 42.18 | 2.52 |
350 | 351 | 3.902881 | ATGAGCTCAGGTGTAGAAAGG | 57.097 | 47.619 | 22.96 | 0.00 | 0.00 | 3.11 |
351 | 352 | 2.609747 | TGAGCTCAGGTGTAGAAAGGT | 58.390 | 47.619 | 13.74 | 0.00 | 0.00 | 3.50 |
353 | 354 | 3.510360 | TGAGCTCAGGTGTAGAAAGGTAC | 59.490 | 47.826 | 13.74 | 0.00 | 0.00 | 3.34 |
367 | 368 | 2.150397 | AGGTACTTTCGTGCAGTCAC | 57.850 | 50.000 | 0.00 | 0.00 | 35.69 | 3.67 |
368 | 369 | 1.687123 | AGGTACTTTCGTGCAGTCACT | 59.313 | 47.619 | 0.00 | 0.00 | 36.67 | 3.41 |
369 | 370 | 2.102588 | AGGTACTTTCGTGCAGTCACTT | 59.897 | 45.455 | 0.00 | 0.00 | 36.67 | 3.16 |
370 | 371 | 2.475487 | GGTACTTTCGTGCAGTCACTTC | 59.525 | 50.000 | 0.00 | 0.00 | 40.99 | 3.01 |
371 | 372 | 1.583054 | ACTTTCGTGCAGTCACTTCC | 58.417 | 50.000 | 0.00 | 0.00 | 40.99 | 3.46 |
372 | 373 | 1.139058 | ACTTTCGTGCAGTCACTTCCT | 59.861 | 47.619 | 0.00 | 0.00 | 40.99 | 3.36 |
374 | 375 | 3.006967 | ACTTTCGTGCAGTCACTTCCTAT | 59.993 | 43.478 | 0.00 | 0.00 | 40.99 | 2.57 |
375 | 376 | 3.678056 | TTCGTGCAGTCACTTCCTATT | 57.322 | 42.857 | 0.00 | 0.00 | 40.99 | 1.73 |
378 | 379 | 2.704572 | GTGCAGTCACTTCCTATTGCT | 58.295 | 47.619 | 0.00 | 0.00 | 40.03 | 3.91 |
379 | 380 | 3.676049 | CGTGCAGTCACTTCCTATTGCTA | 60.676 | 47.826 | 0.00 | 0.00 | 40.99 | 3.49 |
380 | 381 | 3.619038 | GTGCAGTCACTTCCTATTGCTAC | 59.381 | 47.826 | 0.00 | 0.00 | 40.03 | 3.58 |
381 | 382 | 3.260632 | TGCAGTCACTTCCTATTGCTACA | 59.739 | 43.478 | 0.00 | 0.00 | 33.00 | 2.74 |
382 | 383 | 4.080919 | TGCAGTCACTTCCTATTGCTACAT | 60.081 | 41.667 | 0.00 | 0.00 | 33.00 | 2.29 |
383 | 384 | 4.509600 | GCAGTCACTTCCTATTGCTACATC | 59.490 | 45.833 | 0.00 | 0.00 | 0.00 | 3.06 |
384 | 385 | 4.742167 | CAGTCACTTCCTATTGCTACATCG | 59.258 | 45.833 | 0.00 | 0.00 | 0.00 | 3.84 |
385 | 386 | 4.645136 | AGTCACTTCCTATTGCTACATCGA | 59.355 | 41.667 | 0.00 | 0.00 | 0.00 | 3.59 |
386 | 387 | 4.979197 | GTCACTTCCTATTGCTACATCGAG | 59.021 | 45.833 | 0.00 | 0.00 | 0.00 | 4.04 |
388 | 389 | 4.979197 | CACTTCCTATTGCTACATCGAGTC | 59.021 | 45.833 | 0.00 | 0.00 | 0.00 | 3.36 |
389 | 390 | 3.898517 | TCCTATTGCTACATCGAGTCG | 57.101 | 47.619 | 6.09 | 6.09 | 0.00 | 4.18 |
390 | 391 | 3.211865 | TCCTATTGCTACATCGAGTCGT | 58.788 | 45.455 | 13.12 | 0.00 | 0.00 | 4.34 |
391 | 392 | 3.003378 | TCCTATTGCTACATCGAGTCGTG | 59.997 | 47.826 | 13.12 | 12.33 | 0.00 | 4.35 |
392 | 393 | 2.941453 | ATTGCTACATCGAGTCGTGT | 57.059 | 45.000 | 19.53 | 19.53 | 0.00 | 4.49 |
393 | 394 | 4.024302 | CCTATTGCTACATCGAGTCGTGTA | 60.024 | 45.833 | 19.64 | 19.64 | 0.00 | 2.90 |
395 | 396 | 3.334272 | TGCTACATCGAGTCGTGTATG | 57.666 | 47.619 | 20.51 | 15.98 | 31.06 | 2.39 |
396 | 397 | 2.044860 | GCTACATCGAGTCGTGTATGC | 58.955 | 52.381 | 20.51 | 20.08 | 31.06 | 3.14 |
397 | 398 | 2.651701 | CTACATCGAGTCGTGTATGCC | 58.348 | 52.381 | 20.51 | 0.00 | 31.06 | 4.40 |
398 | 399 | 0.815095 | ACATCGAGTCGTGTATGCCA | 59.185 | 50.000 | 13.12 | 0.00 | 0.00 | 4.92 |
399 | 400 | 1.409064 | ACATCGAGTCGTGTATGCCAT | 59.591 | 47.619 | 13.12 | 0.00 | 0.00 | 4.40 |
401 | 402 | 3.255888 | ACATCGAGTCGTGTATGCCATAT | 59.744 | 43.478 | 13.12 | 0.00 | 0.00 | 1.78 |
402 | 403 | 4.457949 | ACATCGAGTCGTGTATGCCATATA | 59.542 | 41.667 | 13.12 | 0.00 | 0.00 | 0.86 |
403 | 404 | 5.048294 | ACATCGAGTCGTGTATGCCATATAA | 60.048 | 40.000 | 13.12 | 0.00 | 0.00 | 0.98 |
404 | 405 | 5.638596 | TCGAGTCGTGTATGCCATATAAT | 57.361 | 39.130 | 13.12 | 0.00 | 0.00 | 1.28 |
407 | 408 | 6.072119 | TCGAGTCGTGTATGCCATATAATTCT | 60.072 | 38.462 | 13.12 | 0.00 | 0.00 | 2.40 |
408 | 409 | 6.251589 | CGAGTCGTGTATGCCATATAATTCTC | 59.748 | 42.308 | 3.82 | 0.00 | 0.00 | 2.87 |
409 | 410 | 6.993079 | AGTCGTGTATGCCATATAATTCTCA | 58.007 | 36.000 | 0.00 | 0.00 | 0.00 | 3.27 |
410 | 411 | 7.615403 | AGTCGTGTATGCCATATAATTCTCAT | 58.385 | 34.615 | 0.00 | 0.00 | 0.00 | 2.90 |
411 | 412 | 7.547019 | AGTCGTGTATGCCATATAATTCTCATG | 59.453 | 37.037 | 0.00 | 0.00 | 0.00 | 3.07 |
413 | 414 | 8.093927 | TCGTGTATGCCATATAATTCTCATGAA | 58.906 | 33.333 | 0.00 | 0.00 | 36.54 | 2.57 |
414 | 415 | 8.385858 | CGTGTATGCCATATAATTCTCATGAAG | 58.614 | 37.037 | 0.00 | 0.00 | 35.44 | 3.02 |
415 | 416 | 8.671921 | GTGTATGCCATATAATTCTCATGAAGG | 58.328 | 37.037 | 0.00 | 0.00 | 35.44 | 3.46 |
416 | 417 | 8.605065 | TGTATGCCATATAATTCTCATGAAGGA | 58.395 | 33.333 | 0.00 | 0.00 | 35.44 | 3.36 |
417 | 418 | 9.453572 | GTATGCCATATAATTCTCATGAAGGAA | 57.546 | 33.333 | 0.00 | 0.00 | 35.44 | 3.36 |
418 | 419 | 8.945195 | ATGCCATATAATTCTCATGAAGGAAA | 57.055 | 30.769 | 0.00 | 0.00 | 35.44 | 3.13 |
419 | 420 | 8.400184 | TGCCATATAATTCTCATGAAGGAAAG | 57.600 | 34.615 | 0.00 | 0.00 | 35.44 | 2.62 |
420 | 421 | 8.000709 | TGCCATATAATTCTCATGAAGGAAAGT | 58.999 | 33.333 | 0.00 | 0.00 | 35.44 | 2.66 |
428 | 1143 | 6.358974 | TCTCATGAAGGAAAGTACATCACA | 57.641 | 37.500 | 0.00 | 0.00 | 0.00 | 3.58 |
439 | 1154 | 6.809196 | GGAAAGTACATCACACTTCTGACTAG | 59.191 | 42.308 | 0.00 | 0.00 | 35.19 | 2.57 |
443 | 1158 | 7.395617 | AGTACATCACACTTCTGACTAGTCTA | 58.604 | 38.462 | 23.01 | 9.20 | 0.00 | 2.59 |
474 | 1189 | 4.825085 | TGGTCAATTCAGTTTAACCCAGTC | 59.175 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
480 | 1195 | 5.617528 | TTCAGTTTAACCCAGTCTGTGTA | 57.382 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
646 | 1361 | 8.690884 | GGCTCACAATATAGATGCTTATCTCTA | 58.309 | 37.037 | 0.00 | 0.00 | 32.36 | 2.43 |
698 | 1413 | 2.527624 | TGAGGTGCTCCAGCCACT | 60.528 | 61.111 | 7.70 | 0.00 | 41.18 | 4.00 |
712 | 1427 | 0.531532 | GCCACTGATCCTCACCATCG | 60.532 | 60.000 | 0.00 | 0.00 | 0.00 | 3.84 |
881 | 1597 | 6.920569 | ATTTCTGTCGTTGTCATATAACCC | 57.079 | 37.500 | 0.00 | 0.00 | 0.00 | 4.11 |
882 | 1598 | 5.670792 | TTCTGTCGTTGTCATATAACCCT | 57.329 | 39.130 | 0.00 | 0.00 | 0.00 | 4.34 |
883 | 1599 | 5.006153 | TCTGTCGTTGTCATATAACCCTG | 57.994 | 43.478 | 0.00 | 0.00 | 0.00 | 4.45 |
884 | 1600 | 4.119862 | CTGTCGTTGTCATATAACCCTGG | 58.880 | 47.826 | 0.00 | 0.00 | 0.00 | 4.45 |
885 | 1601 | 3.118555 | TGTCGTTGTCATATAACCCTGGG | 60.119 | 47.826 | 12.28 | 12.28 | 0.00 | 4.45 |
886 | 1602 | 3.109151 | TCGTTGTCATATAACCCTGGGT | 58.891 | 45.455 | 14.05 | 14.05 | 37.65 | 4.51 |
888 | 1604 | 3.625764 | CGTTGTCATATAACCCTGGGTTG | 59.374 | 47.826 | 35.74 | 22.61 | 46.35 | 3.77 |
889 | 1605 | 3.290948 | TGTCATATAACCCTGGGTTGC | 57.709 | 47.619 | 35.74 | 19.77 | 46.35 | 4.17 |
890 | 1606 | 2.849943 | TGTCATATAACCCTGGGTTGCT | 59.150 | 45.455 | 35.74 | 25.42 | 46.35 | 3.91 |
891 | 1607 | 3.214328 | GTCATATAACCCTGGGTTGCTG | 58.786 | 50.000 | 35.74 | 27.57 | 46.35 | 4.41 |
892 | 1608 | 2.849943 | TCATATAACCCTGGGTTGCTGT | 59.150 | 45.455 | 35.74 | 22.01 | 46.35 | 4.40 |
893 | 1609 | 3.118038 | TCATATAACCCTGGGTTGCTGTC | 60.118 | 47.826 | 35.74 | 0.00 | 46.35 | 3.51 |
894 | 1610 | 1.372501 | ATAACCCTGGGTTGCTGTCT | 58.627 | 50.000 | 35.74 | 14.68 | 46.35 | 3.41 |
895 | 1611 | 1.145571 | TAACCCTGGGTTGCTGTCTT | 58.854 | 50.000 | 35.74 | 13.94 | 46.35 | 3.01 |
896 | 1612 | 0.261696 | AACCCTGGGTTGCTGTCTTT | 59.738 | 50.000 | 29.76 | 2.33 | 45.07 | 2.52 |
897 | 1613 | 0.178990 | ACCCTGGGTTGCTGTCTTTC | 60.179 | 55.000 | 14.05 | 0.00 | 27.29 | 2.62 |
898 | 1614 | 0.111253 | CCCTGGGTTGCTGTCTTTCT | 59.889 | 55.000 | 3.97 | 0.00 | 0.00 | 2.52 |
899 | 1615 | 1.479389 | CCCTGGGTTGCTGTCTTTCTT | 60.479 | 52.381 | 3.97 | 0.00 | 0.00 | 2.52 |
900 | 1616 | 1.610522 | CCTGGGTTGCTGTCTTTCTTG | 59.389 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
901 | 1617 | 2.575532 | CTGGGTTGCTGTCTTTCTTGA | 58.424 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
902 | 1618 | 2.291741 | CTGGGTTGCTGTCTTTCTTGAC | 59.708 | 50.000 | 0.00 | 0.00 | 37.47 | 3.18 |
903 | 1619 | 1.609072 | GGGTTGCTGTCTTTCTTGACC | 59.391 | 52.381 | 0.00 | 0.00 | 36.21 | 4.02 |
904 | 1620 | 2.576615 | GGTTGCTGTCTTTCTTGACCT | 58.423 | 47.619 | 0.00 | 0.00 | 36.21 | 3.85 |
905 | 1621 | 2.952310 | GGTTGCTGTCTTTCTTGACCTT | 59.048 | 45.455 | 0.00 | 0.00 | 36.21 | 3.50 |
906 | 1622 | 3.243201 | GGTTGCTGTCTTTCTTGACCTTG | 60.243 | 47.826 | 0.00 | 0.00 | 36.21 | 3.61 |
907 | 1623 | 3.281727 | TGCTGTCTTTCTTGACCTTGT | 57.718 | 42.857 | 0.00 | 0.00 | 36.21 | 3.16 |
908 | 1624 | 3.620488 | TGCTGTCTTTCTTGACCTTGTT | 58.380 | 40.909 | 0.00 | 0.00 | 36.21 | 2.83 |
909 | 1625 | 3.378112 | TGCTGTCTTTCTTGACCTTGTTG | 59.622 | 43.478 | 0.00 | 0.00 | 36.21 | 3.33 |
910 | 1626 | 3.378427 | GCTGTCTTTCTTGACCTTGTTGT | 59.622 | 43.478 | 0.00 | 0.00 | 36.21 | 3.32 |
911 | 1627 | 4.496507 | GCTGTCTTTCTTGACCTTGTTGTC | 60.497 | 45.833 | 0.00 | 0.00 | 36.21 | 3.18 |
912 | 1628 | 4.584874 | TGTCTTTCTTGACCTTGTTGTCA | 58.415 | 39.130 | 0.00 | 0.00 | 43.26 | 3.58 |
932 | 1648 | 3.268334 | TCATATAACCCTGGGTTGCTGTT | 59.732 | 43.478 | 35.74 | 19.10 | 46.35 | 3.16 |
1024 | 1741 | 3.557898 | GGAGGTTCTGATTTCAGCTGTGA | 60.558 | 47.826 | 14.67 | 3.79 | 43.46 | 3.58 |
1026 | 1743 | 3.141398 | GGTTCTGATTTCAGCTGTGACA | 58.859 | 45.455 | 14.67 | 9.17 | 43.46 | 3.58 |
1081 | 1798 | 2.599973 | GCGCAAAATTATGGCACTCAAG | 59.400 | 45.455 | 0.30 | 0.00 | 0.00 | 3.02 |
1129 | 1849 | 2.988010 | ACGCATCTTGCTAAGGATGA | 57.012 | 45.000 | 7.06 | 0.00 | 42.25 | 2.92 |
1203 | 1923 | 1.732809 | CTGCAGCTGAAGACACTCATG | 59.267 | 52.381 | 17.72 | 0.00 | 0.00 | 3.07 |
1209 | 1929 | 0.615331 | TGAAGACACTCATGGAGGGC | 59.385 | 55.000 | 0.00 | 0.00 | 36.37 | 5.19 |
1274 | 1994 | 2.015587 | CCTTGGAGAAGAGAGCATTGC | 58.984 | 52.381 | 0.00 | 0.00 | 0.00 | 3.56 |
1380 | 2100 | 4.033358 | GCTTCTATGATGAAGAACACACCG | 59.967 | 45.833 | 8.25 | 0.00 | 44.40 | 4.94 |
1551 | 2271 | 0.895100 | AGTGCATGTTTGGTCGCCAT | 60.895 | 50.000 | 0.00 | 0.00 | 31.53 | 4.40 |
1569 | 2289 | 3.070018 | CCATGTCGAGAAAGAGCAACTT | 58.930 | 45.455 | 0.00 | 0.00 | 40.98 | 2.66 |
1662 | 2382 | 3.563808 | CACACAGAATCGGGAAGAAAACA | 59.436 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
1741 | 2461 | 9.224267 | TGTTTTTCTTCAAAGGAGATGATCTAG | 57.776 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
1742 | 2462 | 7.856145 | TTTTCTTCAAAGGAGATGATCTAGC | 57.144 | 36.000 | 0.00 | 0.00 | 0.00 | 3.42 |
1797 | 2517 | 4.065789 | CCTCAGGGAAGTACTTGTTTGTC | 58.934 | 47.826 | 14.14 | 0.00 | 33.58 | 3.18 |
1890 | 2610 | 4.947388 | GGTGCTGGGATCAAAATTGTAGTA | 59.053 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
2175 | 2895 | 1.131883 | GGACTAGTTCGCGAGCACTTA | 59.868 | 52.381 | 24.99 | 7.90 | 38.81 | 2.24 |
2266 | 2986 | 3.640407 | TGGGTGGTCAGGCTCAGC | 61.640 | 66.667 | 0.00 | 0.00 | 0.00 | 4.26 |
2287 | 3007 | 4.021894 | AGCGATACCTGGTGTATGATCTTC | 60.022 | 45.833 | 10.23 | 0.00 | 40.31 | 2.87 |
2389 | 3112 | 5.546621 | AGACAAGTTTGAGGTGCTAGTAA | 57.453 | 39.130 | 0.00 | 0.00 | 0.00 | 2.24 |
2513 | 3236 | 2.565841 | ACAGAAGAGTGCACAAAGGAC | 58.434 | 47.619 | 21.04 | 5.21 | 39.14 | 3.85 |
2676 | 3405 | 2.056577 | GCCTGAGTTGTGTGTACGTAC | 58.943 | 52.381 | 18.90 | 18.90 | 0.00 | 3.67 |
2677 | 3406 | 2.313234 | CCTGAGTTGTGTGTACGTACG | 58.687 | 52.381 | 20.18 | 15.01 | 0.00 | 3.67 |
2679 | 3408 | 3.058983 | CCTGAGTTGTGTGTACGTACGTA | 60.059 | 47.826 | 23.60 | 23.60 | 0.00 | 3.57 |
2681 | 3410 | 5.107109 | TGAGTTGTGTGTACGTACGTAAT | 57.893 | 39.130 | 28.34 | 7.24 | 31.86 | 1.89 |
2682 | 3411 | 5.518812 | TGAGTTGTGTGTACGTACGTAATT | 58.481 | 37.500 | 28.34 | 11.48 | 31.86 | 1.40 |
2683 | 3412 | 5.399006 | TGAGTTGTGTGTACGTACGTAATTG | 59.601 | 40.000 | 28.34 | 0.00 | 31.86 | 2.32 |
2684 | 3413 | 5.518812 | AGTTGTGTGTACGTACGTAATTGA | 58.481 | 37.500 | 28.34 | 6.71 | 31.86 | 2.57 |
2685 | 3414 | 5.976534 | AGTTGTGTGTACGTACGTAATTGAA | 59.023 | 36.000 | 28.34 | 14.86 | 31.86 | 2.69 |
2686 | 3415 | 6.142798 | AGTTGTGTGTACGTACGTAATTGAAG | 59.857 | 38.462 | 28.34 | 0.00 | 31.86 | 3.02 |
2727 | 3456 | 5.878116 | TGCTTAAAACTTGTGACTACTGTGT | 59.122 | 36.000 | 0.00 | 0.00 | 0.00 | 3.72 |
2728 | 3457 | 6.036735 | TGCTTAAAACTTGTGACTACTGTGTC | 59.963 | 38.462 | 0.00 | 0.00 | 37.47 | 3.67 |
2740 | 3471 | 2.879002 | ACTGTGTCTCTGTGTGTGAG | 57.121 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2898 | 3629 | 4.581309 | TTGATCTCCTTGAGCCAGAAAT | 57.419 | 40.909 | 0.00 | 0.00 | 0.00 | 2.17 |
2902 | 3633 | 3.096852 | TCTCCTTGAGCCAGAAATACGA | 58.903 | 45.455 | 0.00 | 0.00 | 0.00 | 3.43 |
2924 | 3655 | 6.371548 | ACGAAGATGCTTGCTAATCTTGTTAA | 59.628 | 34.615 | 11.29 | 0.00 | 41.96 | 2.01 |
2941 | 3672 | 9.632807 | ATCTTGTTAAAGCATATCTAGTCGATC | 57.367 | 33.333 | 0.00 | 0.00 | 31.95 | 3.69 |
2946 | 3677 | 8.521176 | GTTAAAGCATATCTAGTCGATCCCTTA | 58.479 | 37.037 | 0.00 | 0.00 | 33.48 | 2.69 |
2961 | 3692 | 6.369615 | TCGATCCCTTAAAACCTTTTAACTCG | 59.630 | 38.462 | 0.00 | 6.32 | 37.61 | 4.18 |
3002 | 3735 | 0.834687 | TCCTGAGGGTTACCGCAACT | 60.835 | 55.000 | 0.00 | 0.00 | 46.28 | 3.16 |
3013 | 3746 | 0.317479 | ACCGCAACTGTCTGGACTAC | 59.683 | 55.000 | 2.38 | 0.00 | 0.00 | 2.73 |
3016 | 3749 | 1.269569 | CGCAACTGTCTGGACTACACA | 60.270 | 52.381 | 2.38 | 0.00 | 0.00 | 3.72 |
3021 | 3754 | 4.792521 | ACTGTCTGGACTACACAATCTC | 57.207 | 45.455 | 2.38 | 0.00 | 0.00 | 2.75 |
3022 | 3755 | 4.152647 | ACTGTCTGGACTACACAATCTCA | 58.847 | 43.478 | 2.38 | 0.00 | 0.00 | 3.27 |
3038 | 3771 | 2.972625 | TCTCAACAGTTTAGCCATCCG | 58.027 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
3049 | 3782 | 1.176527 | AGCCATCCGACATGGTTTTG | 58.823 | 50.000 | 13.21 | 0.00 | 41.17 | 2.44 |
3112 | 3846 | 3.898482 | CCGAGATAAACTGGGGGATTTT | 58.102 | 45.455 | 0.00 | 0.00 | 40.18 | 1.82 |
3113 | 3847 | 5.043737 | CCGAGATAAACTGGGGGATTTTA | 57.956 | 43.478 | 0.00 | 0.00 | 40.18 | 1.52 |
3122 | 3856 | 1.273953 | TGGGGGATTTTAGGAGTCCGA | 60.274 | 52.381 | 2.76 | 0.00 | 32.71 | 4.55 |
3143 | 3877 | 2.813907 | ACAGCAGACACATAGGACTCT | 58.186 | 47.619 | 0.00 | 0.00 | 0.00 | 3.24 |
3152 | 3886 | 2.434702 | CACATAGGACTCTTACACCCCC | 59.565 | 54.545 | 0.00 | 0.00 | 0.00 | 5.40 |
3197 | 3931 | 2.801631 | CCGCACCTCCATCCTCTCC | 61.802 | 68.421 | 0.00 | 0.00 | 0.00 | 3.71 |
3216 | 3950 | 5.870706 | TCTCCTTTTCTCTCCTTCCTTTTC | 58.129 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
3225 | 3959 | 6.795590 | TCTCTCCTTCCTTTTCTCTCTCTTA | 58.204 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
3240 | 3974 | 4.094590 | TCTCTCTTACTTTCGTCATCGGTC | 59.905 | 45.833 | 0.00 | 0.00 | 37.69 | 4.79 |
3248 | 3982 | 2.646175 | CGTCATCGGTCCACCACCT | 61.646 | 63.158 | 0.00 | 0.00 | 44.21 | 4.00 |
3283 | 4017 | 2.912542 | CCCTATCGGAGCTCGGCA | 60.913 | 66.667 | 16.03 | 6.20 | 39.77 | 5.69 |
3329 | 4063 | 2.821810 | GCTCCAAGCCGCTTCTCC | 60.822 | 66.667 | 1.56 | 0.00 | 34.48 | 3.71 |
3339 | 4073 | 3.077556 | GCTTCTCCTCCTCCGCCA | 61.078 | 66.667 | 0.00 | 0.00 | 0.00 | 5.69 |
3350 | 4084 | 1.002134 | CTCCGCCATTCCACACCTT | 60.002 | 57.895 | 0.00 | 0.00 | 0.00 | 3.50 |
3369 | 4103 | 1.750341 | TTCCTTCGACCTCCGTGCAA | 61.750 | 55.000 | 0.00 | 0.00 | 39.75 | 4.08 |
3404 | 4138 | 2.691409 | ACAATACTCACCATGTCCGG | 57.309 | 50.000 | 0.00 | 0.00 | 0.00 | 5.14 |
3407 | 4141 | 0.465705 | ATACTCACCATGTCCGGCAG | 59.534 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
3408 | 4142 | 0.902984 | TACTCACCATGTCCGGCAGT | 60.903 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
3415 | 4149 | 0.948623 | CATGTCCGGCAGTTGTTCGA | 60.949 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
3463 | 4197 | 7.094508 | TGTTTCTTGTACTTTGAAGCAATGA | 57.905 | 32.000 | 8.94 | 0.00 | 30.33 | 2.57 |
3467 | 4201 | 8.801715 | TTCTTGTACTTTGAAGCAATGAATTC | 57.198 | 30.769 | 0.00 | 0.00 | 0.00 | 2.17 |
3468 | 4202 | 7.939782 | TCTTGTACTTTGAAGCAATGAATTCA | 58.060 | 30.769 | 11.26 | 11.26 | 33.73 | 2.57 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
29 | 30 | 9.995003 | AAAGTATGCCACAAAAATATTTCAGAA | 57.005 | 25.926 | 0.10 | 0.00 | 0.00 | 3.02 |
38 | 39 | 9.777297 | ACATTTCTTAAAGTATGCCACAAAAAT | 57.223 | 25.926 | 0.00 | 0.00 | 0.00 | 1.82 |
39 | 40 | 9.606631 | AACATTTCTTAAAGTATGCCACAAAAA | 57.393 | 25.926 | 0.00 | 0.00 | 0.00 | 1.94 |
40 | 41 | 9.606631 | AAACATTTCTTAAAGTATGCCACAAAA | 57.393 | 25.926 | 0.00 | 0.00 | 0.00 | 2.44 |
41 | 42 | 9.039870 | CAAACATTTCTTAAAGTATGCCACAAA | 57.960 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
44 | 45 | 8.487176 | CAACAAACATTTCTTAAAGTATGCCAC | 58.513 | 33.333 | 0.00 | 0.00 | 0.00 | 5.01 |
45 | 46 | 8.200792 | ACAACAAACATTTCTTAAAGTATGCCA | 58.799 | 29.630 | 0.00 | 0.00 | 0.00 | 4.92 |
46 | 47 | 8.487176 | CACAACAAACATTTCTTAAAGTATGCC | 58.513 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
47 | 48 | 8.003784 | GCACAACAAACATTTCTTAAAGTATGC | 58.996 | 33.333 | 0.00 | 0.00 | 0.00 | 3.14 |
49 | 50 | 9.762933 | ATGCACAACAAACATTTCTTAAAGTAT | 57.237 | 25.926 | 0.00 | 0.00 | 0.00 | 2.12 |
50 | 51 | 9.029243 | CATGCACAACAAACATTTCTTAAAGTA | 57.971 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
52 | 53 | 6.847289 | GCATGCACAACAAACATTTCTTAAAG | 59.153 | 34.615 | 14.21 | 0.00 | 0.00 | 1.85 |
54 | 55 | 5.814188 | TGCATGCACAACAAACATTTCTTAA | 59.186 | 32.000 | 18.46 | 0.00 | 0.00 | 1.85 |
55 | 56 | 5.354767 | TGCATGCACAACAAACATTTCTTA | 58.645 | 33.333 | 18.46 | 0.00 | 0.00 | 2.10 |
56 | 57 | 4.190001 | TGCATGCACAACAAACATTTCTT | 58.810 | 34.783 | 18.46 | 0.00 | 0.00 | 2.52 |
59 | 60 | 4.959596 | TTTGCATGCACAACAAACATTT | 57.040 | 31.818 | 22.58 | 0.00 | 0.00 | 2.32 |
60 | 61 | 4.959596 | TTTTGCATGCACAACAAACATT | 57.040 | 31.818 | 22.58 | 0.00 | 33.29 | 2.71 |
61 | 62 | 4.959596 | TTTTTGCATGCACAACAAACAT | 57.040 | 31.818 | 22.58 | 0.00 | 33.29 | 2.71 |
62 | 63 | 4.959596 | ATTTTTGCATGCACAACAAACA | 57.040 | 31.818 | 22.58 | 5.03 | 33.29 | 2.83 |
63 | 64 | 4.433945 | CGAATTTTTGCATGCACAACAAAC | 59.566 | 37.500 | 22.58 | 10.38 | 33.29 | 2.93 |
64 | 65 | 4.093998 | ACGAATTTTTGCATGCACAACAAA | 59.906 | 33.333 | 22.58 | 15.48 | 0.00 | 2.83 |
66 | 67 | 3.193263 | ACGAATTTTTGCATGCACAACA | 58.807 | 36.364 | 22.58 | 11.40 | 0.00 | 3.33 |
67 | 68 | 3.244814 | TGACGAATTTTTGCATGCACAAC | 59.755 | 39.130 | 22.58 | 7.72 | 0.00 | 3.32 |
68 | 69 | 3.451526 | TGACGAATTTTTGCATGCACAA | 58.548 | 36.364 | 22.58 | 18.48 | 0.00 | 3.33 |
71 | 72 | 3.910648 | TCATGACGAATTTTTGCATGCA | 58.089 | 36.364 | 18.46 | 18.46 | 37.01 | 3.96 |
72 | 73 | 4.907188 | TTCATGACGAATTTTTGCATGC | 57.093 | 36.364 | 11.82 | 11.82 | 37.01 | 4.06 |
73 | 74 | 7.051422 | TCATTTCATGACGAATTTTTGCATG | 57.949 | 32.000 | 0.00 | 0.00 | 38.09 | 4.06 |
87 | 88 | 3.735720 | TCCACCCATGTCATTTCATGA | 57.264 | 42.857 | 8.04 | 0.00 | 45.41 | 3.07 |
88 | 89 | 3.131577 | CCTTCCACCCATGTCATTTCATG | 59.868 | 47.826 | 0.00 | 0.00 | 43.14 | 3.07 |
93 | 94 | 0.409092 | TGCCTTCCACCCATGTCATT | 59.591 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
94 | 95 | 0.632835 | ATGCCTTCCACCCATGTCAT | 59.367 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
95 | 96 | 0.323633 | CATGCCTTCCACCCATGTCA | 60.324 | 55.000 | 0.00 | 0.00 | 33.46 | 3.58 |
96 | 97 | 1.039233 | CCATGCCTTCCACCCATGTC | 61.039 | 60.000 | 0.00 | 0.00 | 35.70 | 3.06 |
97 | 98 | 1.000739 | CCATGCCTTCCACCCATGT | 59.999 | 57.895 | 0.00 | 0.00 | 35.70 | 3.21 |
98 | 99 | 0.258484 | TACCATGCCTTCCACCCATG | 59.742 | 55.000 | 0.00 | 0.00 | 36.87 | 3.66 |
99 | 100 | 1.006813 | TTACCATGCCTTCCACCCAT | 58.993 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
100 | 101 | 0.780637 | TTTACCATGCCTTCCACCCA | 59.219 | 50.000 | 0.00 | 0.00 | 0.00 | 4.51 |
134 | 135 | 9.654417 | GCGTTTGAAAGTAACATTTTTAGAGTA | 57.346 | 29.630 | 0.00 | 0.00 | 0.00 | 2.59 |
135 | 136 | 8.185505 | TGCGTTTGAAAGTAACATTTTTAGAGT | 58.814 | 29.630 | 0.00 | 0.00 | 0.00 | 3.24 |
136 | 137 | 8.555166 | TGCGTTTGAAAGTAACATTTTTAGAG | 57.445 | 30.769 | 0.00 | 0.00 | 0.00 | 2.43 |
154 | 155 | 2.030893 | TCAGAGCTCCAAAATGCGTTTG | 60.031 | 45.455 | 10.93 | 5.20 | 45.36 | 2.93 |
155 | 156 | 2.229792 | TCAGAGCTCCAAAATGCGTTT | 58.770 | 42.857 | 10.93 | 0.00 | 0.00 | 3.60 |
156 | 157 | 1.896220 | TCAGAGCTCCAAAATGCGTT | 58.104 | 45.000 | 10.93 | 0.00 | 0.00 | 4.84 |
157 | 158 | 2.119801 | ATCAGAGCTCCAAAATGCGT | 57.880 | 45.000 | 10.93 | 0.00 | 0.00 | 5.24 |
158 | 159 | 3.498927 | AAATCAGAGCTCCAAAATGCG | 57.501 | 42.857 | 10.93 | 0.00 | 0.00 | 4.73 |
186 | 187 | 1.456705 | GGTGGAGGTTGTGGCCAAA | 60.457 | 57.895 | 7.24 | 0.00 | 32.68 | 3.28 |
187 | 188 | 2.197324 | GGTGGAGGTTGTGGCCAA | 59.803 | 61.111 | 7.24 | 0.00 | 32.68 | 4.52 |
188 | 189 | 2.017668 | ATTGGTGGAGGTTGTGGCCA | 62.018 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
190 | 191 | 0.827507 | ACATTGGTGGAGGTTGTGGC | 60.828 | 55.000 | 0.00 | 0.00 | 0.00 | 5.01 |
191 | 192 | 0.961019 | CACATTGGTGGAGGTTGTGG | 59.039 | 55.000 | 0.00 | 0.00 | 41.45 | 4.17 |
204 | 205 | 6.864360 | AAATTTCATCACCAAACCACATTG | 57.136 | 33.333 | 0.00 | 0.00 | 0.00 | 2.82 |
205 | 206 | 6.238703 | GCAAAATTTCATCACCAAACCACATT | 60.239 | 34.615 | 0.00 | 0.00 | 0.00 | 2.71 |
207 | 208 | 4.574013 | GCAAAATTTCATCACCAAACCACA | 59.426 | 37.500 | 0.00 | 0.00 | 0.00 | 4.17 |
209 | 210 | 4.774124 | TGCAAAATTTCATCACCAAACCA | 58.226 | 34.783 | 0.00 | 0.00 | 0.00 | 3.67 |
210 | 211 | 5.691815 | CATGCAAAATTTCATCACCAAACC | 58.308 | 37.500 | 0.00 | 0.00 | 0.00 | 3.27 |
213 | 214 | 4.213694 | GTGCATGCAAAATTTCATCACCAA | 59.786 | 37.500 | 24.58 | 0.00 | 0.00 | 3.67 |
215 | 216 | 3.747010 | TGTGCATGCAAAATTTCATCACC | 59.253 | 39.130 | 24.58 | 5.50 | 0.00 | 4.02 |
216 | 217 | 4.994220 | TGTGCATGCAAAATTTCATCAC | 57.006 | 36.364 | 24.58 | 5.73 | 0.00 | 3.06 |
217 | 218 | 4.814771 | TGTTGTGCATGCAAAATTTCATCA | 59.185 | 33.333 | 25.58 | 17.41 | 0.00 | 3.07 |
218 | 219 | 5.345609 | TGTTGTGCATGCAAAATTTCATC | 57.654 | 34.783 | 25.58 | 15.25 | 0.00 | 2.92 |
219 | 220 | 5.752892 | TTGTTGTGCATGCAAAATTTCAT | 57.247 | 30.435 | 25.58 | 0.00 | 0.00 | 2.57 |
220 | 221 | 5.106436 | TGTTTGTTGTGCATGCAAAATTTCA | 60.106 | 32.000 | 25.58 | 16.21 | 34.47 | 2.69 |
222 | 223 | 5.306532 | TGTTTGTTGTGCATGCAAAATTT | 57.693 | 30.435 | 25.58 | 0.00 | 34.47 | 1.82 |
223 | 224 | 4.959596 | TGTTTGTTGTGCATGCAAAATT | 57.040 | 31.818 | 25.58 | 0.00 | 34.47 | 1.82 |
227 | 228 | 4.190001 | AGAAATGTTTGTTGTGCATGCAA | 58.810 | 34.783 | 24.58 | 10.26 | 0.00 | 4.08 |
228 | 229 | 3.794717 | AGAAATGTTTGTTGTGCATGCA | 58.205 | 36.364 | 18.46 | 18.46 | 0.00 | 3.96 |
229 | 230 | 4.799419 | AAGAAATGTTTGTTGTGCATGC | 57.201 | 36.364 | 11.82 | 11.82 | 0.00 | 4.06 |
230 | 231 | 7.908230 | ACTTTAAGAAATGTTTGTTGTGCATG | 58.092 | 30.769 | 0.00 | 0.00 | 0.00 | 4.06 |
231 | 232 | 9.762933 | ATACTTTAAGAAATGTTTGTTGTGCAT | 57.237 | 25.926 | 0.00 | 0.00 | 0.00 | 3.96 |
232 | 233 | 9.029243 | CATACTTTAAGAAATGTTTGTTGTGCA | 57.971 | 29.630 | 0.00 | 0.00 | 0.00 | 4.57 |
233 | 234 | 8.003784 | GCATACTTTAAGAAATGTTTGTTGTGC | 58.996 | 33.333 | 0.00 | 0.00 | 29.91 | 4.57 |
235 | 236 | 8.200792 | TGGCATACTTTAAGAAATGTTTGTTGT | 58.799 | 29.630 | 0.00 | 0.00 | 29.91 | 3.32 |
236 | 237 | 8.487176 | GTGGCATACTTTAAGAAATGTTTGTTG | 58.513 | 33.333 | 0.00 | 0.00 | 29.91 | 3.33 |
237 | 238 | 8.200792 | TGTGGCATACTTTAAGAAATGTTTGTT | 58.799 | 29.630 | 0.00 | 0.00 | 29.91 | 2.83 |
239 | 240 | 8.586570 | TTGTGGCATACTTTAAGAAATGTTTG | 57.413 | 30.769 | 0.00 | 0.00 | 0.00 | 2.93 |
240 | 241 | 9.606631 | TTTTGTGGCATACTTTAAGAAATGTTT | 57.393 | 25.926 | 0.00 | 0.00 | 0.00 | 2.83 |
241 | 242 | 9.606631 | TTTTTGTGGCATACTTTAAGAAATGTT | 57.393 | 25.926 | 0.00 | 0.00 | 0.00 | 2.71 |
302 | 303 | 7.609918 | TGCTCCTGCTATGAACAGTAAAATAAA | 59.390 | 33.333 | 0.00 | 0.00 | 40.48 | 1.40 |
303 | 304 | 7.109501 | TGCTCCTGCTATGAACAGTAAAATAA | 58.890 | 34.615 | 0.00 | 0.00 | 40.48 | 1.40 |
304 | 305 | 6.649155 | TGCTCCTGCTATGAACAGTAAAATA | 58.351 | 36.000 | 0.00 | 0.00 | 40.48 | 1.40 |
305 | 306 | 5.500234 | TGCTCCTGCTATGAACAGTAAAAT | 58.500 | 37.500 | 0.00 | 0.00 | 40.48 | 1.82 |
306 | 307 | 4.905429 | TGCTCCTGCTATGAACAGTAAAA | 58.095 | 39.130 | 0.00 | 0.00 | 40.48 | 1.52 |
308 | 309 | 4.760530 | ATGCTCCTGCTATGAACAGTAA | 57.239 | 40.909 | 0.00 | 0.00 | 40.48 | 2.24 |
309 | 310 | 5.539955 | TCATATGCTCCTGCTATGAACAGTA | 59.460 | 40.000 | 0.00 | 0.00 | 36.90 | 2.74 |
312 | 313 | 4.801914 | GCTCATATGCTCCTGCTATGAACA | 60.802 | 45.833 | 0.00 | 0.00 | 38.05 | 3.18 |
313 | 314 | 3.683822 | GCTCATATGCTCCTGCTATGAAC | 59.316 | 47.826 | 0.00 | 0.00 | 38.05 | 3.18 |
314 | 315 | 3.581770 | AGCTCATATGCTCCTGCTATGAA | 59.418 | 43.478 | 0.00 | 0.00 | 39.34 | 2.57 |
315 | 316 | 3.171528 | AGCTCATATGCTCCTGCTATGA | 58.828 | 45.455 | 0.00 | 0.00 | 39.34 | 2.15 |
316 | 317 | 3.613494 | AGCTCATATGCTCCTGCTATG | 57.387 | 47.619 | 0.00 | 0.00 | 39.34 | 2.23 |
326 | 327 | 4.327982 | TTCTACACCTGAGCTCATATGC | 57.672 | 45.455 | 18.63 | 0.00 | 0.00 | 3.14 |
327 | 328 | 5.163364 | ACCTTTCTACACCTGAGCTCATATG | 60.163 | 44.000 | 18.63 | 19.73 | 0.00 | 1.78 |
328 | 329 | 4.965532 | ACCTTTCTACACCTGAGCTCATAT | 59.034 | 41.667 | 18.63 | 5.36 | 0.00 | 1.78 |
330 | 331 | 3.177228 | ACCTTTCTACACCTGAGCTCAT | 58.823 | 45.455 | 18.63 | 4.63 | 0.00 | 2.90 |
331 | 332 | 2.609747 | ACCTTTCTACACCTGAGCTCA | 58.390 | 47.619 | 17.19 | 17.19 | 0.00 | 4.26 |
332 | 333 | 3.764972 | AGTACCTTTCTACACCTGAGCTC | 59.235 | 47.826 | 6.82 | 6.82 | 0.00 | 4.09 |
333 | 334 | 3.780626 | AGTACCTTTCTACACCTGAGCT | 58.219 | 45.455 | 0.00 | 0.00 | 0.00 | 4.09 |
334 | 335 | 4.538746 | AAGTACCTTTCTACACCTGAGC | 57.461 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
335 | 336 | 5.162075 | CGAAAGTACCTTTCTACACCTGAG | 58.838 | 45.833 | 13.19 | 0.00 | 45.19 | 3.35 |
336 | 337 | 4.586001 | ACGAAAGTACCTTTCTACACCTGA | 59.414 | 41.667 | 13.19 | 0.00 | 45.19 | 3.86 |
337 | 338 | 4.684703 | CACGAAAGTACCTTTCTACACCTG | 59.315 | 45.833 | 13.19 | 1.24 | 45.19 | 4.00 |
338 | 339 | 4.798593 | GCACGAAAGTACCTTTCTACACCT | 60.799 | 45.833 | 13.19 | 0.00 | 45.19 | 4.00 |
340 | 341 | 4.053295 | TGCACGAAAGTACCTTTCTACAC | 58.947 | 43.478 | 13.19 | 3.33 | 45.19 | 2.90 |
341 | 342 | 4.202182 | ACTGCACGAAAGTACCTTTCTACA | 60.202 | 41.667 | 13.19 | 8.32 | 45.19 | 2.74 |
342 | 343 | 4.304939 | ACTGCACGAAAGTACCTTTCTAC | 58.695 | 43.478 | 13.19 | 4.97 | 45.19 | 2.59 |
343 | 344 | 4.038282 | TGACTGCACGAAAGTACCTTTCTA | 59.962 | 41.667 | 13.19 | 0.00 | 45.19 | 2.10 |
344 | 345 | 3.181469 | TGACTGCACGAAAGTACCTTTCT | 60.181 | 43.478 | 13.19 | 0.77 | 45.19 | 2.52 |
358 | 359 | 2.704572 | AGCAATAGGAAGTGACTGCAC | 58.295 | 47.619 | 0.00 | 0.00 | 45.49 | 4.57 |
360 | 361 | 3.861840 | TGTAGCAATAGGAAGTGACTGC | 58.138 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
361 | 362 | 4.742167 | CGATGTAGCAATAGGAAGTGACTG | 59.258 | 45.833 | 0.00 | 0.00 | 0.00 | 3.51 |
362 | 363 | 4.645136 | TCGATGTAGCAATAGGAAGTGACT | 59.355 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
363 | 364 | 4.933330 | TCGATGTAGCAATAGGAAGTGAC | 58.067 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
364 | 365 | 4.645136 | ACTCGATGTAGCAATAGGAAGTGA | 59.355 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
365 | 366 | 4.938080 | ACTCGATGTAGCAATAGGAAGTG | 58.062 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
366 | 367 | 4.261238 | CGACTCGATGTAGCAATAGGAAGT | 60.261 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
367 | 368 | 4.222886 | CGACTCGATGTAGCAATAGGAAG | 58.777 | 47.826 | 0.00 | 0.00 | 0.00 | 3.46 |
368 | 369 | 3.630769 | ACGACTCGATGTAGCAATAGGAA | 59.369 | 43.478 | 5.20 | 0.00 | 0.00 | 3.36 |
369 | 370 | 3.003378 | CACGACTCGATGTAGCAATAGGA | 59.997 | 47.826 | 5.20 | 0.00 | 0.00 | 2.94 |
370 | 371 | 3.243101 | ACACGACTCGATGTAGCAATAGG | 60.243 | 47.826 | 5.20 | 0.00 | 0.00 | 2.57 |
371 | 372 | 3.953766 | ACACGACTCGATGTAGCAATAG | 58.046 | 45.455 | 5.20 | 0.00 | 0.00 | 1.73 |
372 | 373 | 5.449304 | CATACACGACTCGATGTAGCAATA | 58.551 | 41.667 | 5.20 | 0.00 | 34.88 | 1.90 |
374 | 375 | 3.691498 | CATACACGACTCGATGTAGCAA | 58.309 | 45.455 | 5.20 | 0.00 | 34.88 | 3.91 |
375 | 376 | 2.540973 | GCATACACGACTCGATGTAGCA | 60.541 | 50.000 | 5.20 | 0.00 | 34.88 | 3.49 |
378 | 379 | 2.018515 | TGGCATACACGACTCGATGTA | 58.981 | 47.619 | 5.20 | 10.24 | 35.82 | 2.29 |
379 | 380 | 0.815095 | TGGCATACACGACTCGATGT | 59.185 | 50.000 | 5.20 | 8.42 | 0.00 | 3.06 |
380 | 381 | 2.140065 | ATGGCATACACGACTCGATG | 57.860 | 50.000 | 5.20 | 0.00 | 0.00 | 3.84 |
381 | 382 | 5.638596 | TTATATGGCATACACGACTCGAT | 57.361 | 39.130 | 9.83 | 0.00 | 0.00 | 3.59 |
382 | 383 | 5.638596 | ATTATATGGCATACACGACTCGA | 57.361 | 39.130 | 9.83 | 0.00 | 0.00 | 4.04 |
383 | 384 | 6.093404 | AGAATTATATGGCATACACGACTCG | 58.907 | 40.000 | 9.83 | 0.00 | 0.00 | 4.18 |
384 | 385 | 7.090808 | TGAGAATTATATGGCATACACGACTC | 58.909 | 38.462 | 9.83 | 15.13 | 0.00 | 3.36 |
385 | 386 | 6.993079 | TGAGAATTATATGGCATACACGACT | 58.007 | 36.000 | 9.83 | 7.14 | 0.00 | 4.18 |
386 | 387 | 7.545615 | TCATGAGAATTATATGGCATACACGAC | 59.454 | 37.037 | 9.83 | 2.40 | 0.00 | 4.34 |
388 | 389 | 7.832503 | TCATGAGAATTATATGGCATACACG | 57.167 | 36.000 | 9.83 | 0.00 | 0.00 | 4.49 |
389 | 390 | 8.671921 | CCTTCATGAGAATTATATGGCATACAC | 58.328 | 37.037 | 9.83 | 0.33 | 32.31 | 2.90 |
390 | 391 | 8.605065 | TCCTTCATGAGAATTATATGGCATACA | 58.395 | 33.333 | 9.83 | 0.00 | 32.31 | 2.29 |
391 | 392 | 9.453572 | TTCCTTCATGAGAATTATATGGCATAC | 57.546 | 33.333 | 9.83 | 0.00 | 32.31 | 2.39 |
393 | 394 | 8.945195 | TTTCCTTCATGAGAATTATATGGCAT | 57.055 | 30.769 | 4.88 | 4.88 | 32.31 | 4.40 |
395 | 396 | 8.401490 | ACTTTCCTTCATGAGAATTATATGGC | 57.599 | 34.615 | 0.00 | 0.00 | 32.31 | 4.40 |
401 | 402 | 9.383519 | GTGATGTACTTTCCTTCATGAGAATTA | 57.616 | 33.333 | 0.00 | 0.00 | 32.31 | 1.40 |
402 | 403 | 7.884877 | TGTGATGTACTTTCCTTCATGAGAATT | 59.115 | 33.333 | 0.00 | 0.00 | 32.31 | 2.17 |
403 | 404 | 7.335422 | GTGTGATGTACTTTCCTTCATGAGAAT | 59.665 | 37.037 | 0.00 | 0.00 | 32.31 | 2.40 |
404 | 405 | 6.650807 | GTGTGATGTACTTTCCTTCATGAGAA | 59.349 | 38.462 | 0.00 | 0.00 | 0.00 | 2.87 |
407 | 408 | 6.114187 | AGTGTGATGTACTTTCCTTCATGA | 57.886 | 37.500 | 0.00 | 0.00 | 0.00 | 3.07 |
408 | 409 | 6.652481 | AGAAGTGTGATGTACTTTCCTTCATG | 59.348 | 38.462 | 0.00 | 0.00 | 38.42 | 3.07 |
409 | 410 | 6.652481 | CAGAAGTGTGATGTACTTTCCTTCAT | 59.348 | 38.462 | 0.00 | 0.00 | 38.42 | 2.57 |
410 | 411 | 5.991606 | CAGAAGTGTGATGTACTTTCCTTCA | 59.008 | 40.000 | 0.00 | 0.00 | 38.42 | 3.02 |
411 | 412 | 6.146347 | GTCAGAAGTGTGATGTACTTTCCTTC | 59.854 | 42.308 | 0.00 | 0.00 | 38.42 | 3.46 |
413 | 414 | 5.305644 | AGTCAGAAGTGTGATGTACTTTCCT | 59.694 | 40.000 | 0.00 | 0.00 | 38.42 | 3.36 |
414 | 415 | 5.542779 | AGTCAGAAGTGTGATGTACTTTCC | 58.457 | 41.667 | 0.00 | 0.00 | 38.42 | 3.13 |
415 | 416 | 7.371936 | ACTAGTCAGAAGTGTGATGTACTTTC | 58.628 | 38.462 | 0.00 | 0.00 | 38.42 | 2.62 |
416 | 417 | 7.231722 | AGACTAGTCAGAAGTGTGATGTACTTT | 59.768 | 37.037 | 24.44 | 0.00 | 38.42 | 2.66 |
417 | 418 | 6.717540 | AGACTAGTCAGAAGTGTGATGTACTT | 59.282 | 38.462 | 24.44 | 0.00 | 40.84 | 2.24 |
418 | 419 | 6.242396 | AGACTAGTCAGAAGTGTGATGTACT | 58.758 | 40.000 | 24.44 | 0.00 | 0.00 | 2.73 |
419 | 420 | 6.503589 | AGACTAGTCAGAAGTGTGATGTAC | 57.496 | 41.667 | 24.44 | 0.00 | 0.00 | 2.90 |
420 | 421 | 8.678199 | CATTAGACTAGTCAGAAGTGTGATGTA | 58.322 | 37.037 | 24.44 | 0.91 | 32.72 | 2.29 |
422 | 423 | 7.487509 | CACATTAGACTAGTCAGAAGTGTGATG | 59.512 | 40.741 | 26.65 | 18.42 | 39.02 | 3.07 |
423 | 424 | 7.177568 | ACACATTAGACTAGTCAGAAGTGTGAT | 59.822 | 37.037 | 31.76 | 21.80 | 35.44 | 3.06 |
424 | 425 | 6.490381 | ACACATTAGACTAGTCAGAAGTGTGA | 59.510 | 38.462 | 31.76 | 11.87 | 35.44 | 3.58 |
428 | 1143 | 7.616150 | ACCATACACATTAGACTAGTCAGAAGT | 59.384 | 37.037 | 24.44 | 14.08 | 0.00 | 3.01 |
439 | 1154 | 7.849804 | ACTGAATTGACCATACACATTAGAC | 57.150 | 36.000 | 0.00 | 0.00 | 0.00 | 2.59 |
443 | 1158 | 8.303876 | GGTTAAACTGAATTGACCATACACATT | 58.696 | 33.333 | 6.90 | 0.00 | 38.47 | 2.71 |
474 | 1189 | 3.119459 | AGCCAGTTAGTCATCGTACACAG | 60.119 | 47.826 | 0.00 | 0.00 | 0.00 | 3.66 |
480 | 1195 | 2.675317 | GCTGAAGCCAGTTAGTCATCGT | 60.675 | 50.000 | 0.00 | 0.00 | 42.35 | 3.73 |
595 | 1310 | 6.012337 | TGACCAGGAAGCAATTATCCATAA | 57.988 | 37.500 | 0.00 | 0.00 | 38.23 | 1.90 |
646 | 1361 | 2.540383 | TCCTCCATCACTAGCAACTGT | 58.460 | 47.619 | 0.00 | 0.00 | 0.00 | 3.55 |
712 | 1427 | 2.395654 | GCCTTCTCGATAATGGTCGAC | 58.604 | 52.381 | 7.13 | 7.13 | 44.87 | 4.20 |
876 | 1592 | 1.145571 | AAGACAGCAACCCAGGGTTA | 58.854 | 50.000 | 24.54 | 0.00 | 45.01 | 2.85 |
878 | 1594 | 0.178990 | GAAAGACAGCAACCCAGGGT | 60.179 | 55.000 | 4.76 | 4.76 | 37.65 | 4.34 |
879 | 1595 | 0.111253 | AGAAAGACAGCAACCCAGGG | 59.889 | 55.000 | 2.85 | 2.85 | 0.00 | 4.45 |
880 | 1596 | 1.610522 | CAAGAAAGACAGCAACCCAGG | 59.389 | 52.381 | 0.00 | 0.00 | 0.00 | 4.45 |
881 | 1597 | 2.291741 | GTCAAGAAAGACAGCAACCCAG | 59.708 | 50.000 | 0.00 | 0.00 | 38.40 | 4.45 |
882 | 1598 | 2.297701 | GTCAAGAAAGACAGCAACCCA | 58.702 | 47.619 | 0.00 | 0.00 | 38.40 | 4.51 |
883 | 1599 | 1.609072 | GGTCAAGAAAGACAGCAACCC | 59.391 | 52.381 | 0.00 | 0.00 | 40.29 | 4.11 |
884 | 1600 | 2.576615 | AGGTCAAGAAAGACAGCAACC | 58.423 | 47.619 | 0.00 | 0.00 | 40.29 | 3.77 |
885 | 1601 | 3.378427 | ACAAGGTCAAGAAAGACAGCAAC | 59.622 | 43.478 | 0.00 | 0.00 | 40.29 | 4.17 |
886 | 1602 | 3.620488 | ACAAGGTCAAGAAAGACAGCAA | 58.380 | 40.909 | 0.00 | 0.00 | 40.29 | 3.91 |
887 | 1603 | 3.281727 | ACAAGGTCAAGAAAGACAGCA | 57.718 | 42.857 | 0.00 | 0.00 | 40.29 | 4.41 |
888 | 1604 | 3.378427 | ACAACAAGGTCAAGAAAGACAGC | 59.622 | 43.478 | 0.00 | 0.00 | 40.29 | 4.40 |
889 | 1605 | 4.635765 | TGACAACAAGGTCAAGAAAGACAG | 59.364 | 41.667 | 0.00 | 0.00 | 44.34 | 3.51 |
890 | 1606 | 4.584874 | TGACAACAAGGTCAAGAAAGACA | 58.415 | 39.130 | 0.00 | 0.00 | 44.34 | 3.41 |
900 | 1616 | 4.881850 | CCAGGGTTATATGACAACAAGGTC | 59.118 | 45.833 | 0.00 | 0.00 | 38.29 | 3.85 |
901 | 1617 | 4.325030 | CCCAGGGTTATATGACAACAAGGT | 60.325 | 45.833 | 0.00 | 0.00 | 0.00 | 3.50 |
902 | 1618 | 4.207165 | CCCAGGGTTATATGACAACAAGG | 58.793 | 47.826 | 0.00 | 0.00 | 0.00 | 3.61 |
903 | 1619 | 4.855340 | ACCCAGGGTTATATGACAACAAG | 58.145 | 43.478 | 4.76 | 0.00 | 27.29 | 3.16 |
904 | 1620 | 4.938575 | ACCCAGGGTTATATGACAACAA | 57.061 | 40.909 | 4.76 | 0.00 | 27.29 | 2.83 |
905 | 1621 | 4.594970 | CAACCCAGGGTTATATGACAACA | 58.405 | 43.478 | 24.54 | 0.00 | 45.01 | 3.33 |
906 | 1622 | 3.380320 | GCAACCCAGGGTTATATGACAAC | 59.620 | 47.826 | 24.54 | 1.69 | 45.01 | 3.32 |
907 | 1623 | 3.268334 | AGCAACCCAGGGTTATATGACAA | 59.732 | 43.478 | 24.54 | 0.00 | 45.01 | 3.18 |
908 | 1624 | 2.849943 | AGCAACCCAGGGTTATATGACA | 59.150 | 45.455 | 24.54 | 0.00 | 45.01 | 3.58 |
909 | 1625 | 3.214328 | CAGCAACCCAGGGTTATATGAC | 58.786 | 50.000 | 24.54 | 9.21 | 45.01 | 3.06 |
910 | 1626 | 2.849943 | ACAGCAACCCAGGGTTATATGA | 59.150 | 45.455 | 24.54 | 0.00 | 45.01 | 2.15 |
911 | 1627 | 3.297134 | ACAGCAACCCAGGGTTATATG | 57.703 | 47.619 | 24.54 | 22.20 | 45.01 | 1.78 |
912 | 1628 | 4.331159 | AAACAGCAACCCAGGGTTATAT | 57.669 | 40.909 | 24.54 | 9.83 | 45.01 | 0.86 |
932 | 1648 | 4.836175 | GGTGGGGAAATAAGGTCAAGAAAA | 59.164 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
1024 | 1741 | 0.036952 | CGGCTGACAAGATCACCTGT | 60.037 | 55.000 | 0.00 | 0.00 | 32.37 | 4.00 |
1026 | 1743 | 1.194781 | ACCGGCTGACAAGATCACCT | 61.195 | 55.000 | 0.00 | 0.00 | 32.37 | 4.00 |
1081 | 1798 | 0.103208 | CTACGGTCCTCCTCACATGC | 59.897 | 60.000 | 0.00 | 0.00 | 0.00 | 4.06 |
1203 | 1923 | 2.728817 | CCGAGATACACGCCCTCC | 59.271 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
1209 | 1929 | 3.608707 | GCATGTAGTACCCGAGATACACG | 60.609 | 52.174 | 0.00 | 0.00 | 31.41 | 4.49 |
1274 | 1994 | 3.430513 | CCAGTGACTCACCTCATCATCTG | 60.431 | 52.174 | 5.51 | 0.00 | 34.49 | 2.90 |
1380 | 2100 | 3.142174 | GCTCCTGGTACCAAATGCTATC | 58.858 | 50.000 | 17.11 | 0.00 | 0.00 | 2.08 |
1551 | 2271 | 5.134202 | TGATAAGTTGCTCTTTCTCGACA | 57.866 | 39.130 | 0.68 | 0.00 | 37.56 | 4.35 |
1569 | 2289 | 7.330262 | TGTCATCACATAGCAAGAAGTTGATA | 58.670 | 34.615 | 0.00 | 0.00 | 38.85 | 2.15 |
1741 | 2461 | 2.095213 | TCAATGCAAATACTCCGTTCGC | 59.905 | 45.455 | 0.00 | 0.00 | 0.00 | 4.70 |
1742 | 2462 | 4.088648 | GTTCAATGCAAATACTCCGTTCG | 58.911 | 43.478 | 0.00 | 0.00 | 0.00 | 3.95 |
1890 | 2610 | 0.605860 | CTTGCTCTGCTCTGCCTGTT | 60.606 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2133 | 2853 | 6.151312 | GTCCTCTTATGCTCGATAATACTCCA | 59.849 | 42.308 | 0.00 | 0.00 | 0.00 | 3.86 |
2266 | 2986 | 4.476862 | CGAAGATCATACACCAGGTATCG | 58.523 | 47.826 | 0.00 | 0.00 | 40.76 | 2.92 |
2303 | 3023 | 2.099756 | AGTTTTGGCAGCTCACTTTGAC | 59.900 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
2413 | 3136 | 2.589841 | CGTAAGTAACAACGTAGTCGCC | 59.410 | 50.000 | 0.00 | 0.00 | 45.00 | 5.54 |
2500 | 3223 | 3.307762 | GGGATCTAAGTCCTTTGTGCACT | 60.308 | 47.826 | 19.41 | 0.00 | 38.38 | 4.40 |
2501 | 3224 | 3.010420 | GGGATCTAAGTCCTTTGTGCAC | 58.990 | 50.000 | 10.75 | 10.75 | 38.38 | 4.57 |
2513 | 3236 | 5.959583 | AACTACAAGGAAGGGGATCTAAG | 57.040 | 43.478 | 0.00 | 0.00 | 0.00 | 2.18 |
2604 | 3331 | 8.444783 | ACATACCCCATCTAAAAAGTGCATATA | 58.555 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
2605 | 3332 | 7.231317 | CACATACCCCATCTAAAAAGTGCATAT | 59.769 | 37.037 | 0.00 | 0.00 | 0.00 | 1.78 |
2676 | 3405 | 3.306166 | CCTTACACGAGGCTTCAATTACG | 59.694 | 47.826 | 0.00 | 0.00 | 0.00 | 3.18 |
2677 | 3406 | 4.501071 | TCCTTACACGAGGCTTCAATTAC | 58.499 | 43.478 | 0.00 | 0.00 | 36.71 | 1.89 |
2679 | 3408 | 3.695830 | TCCTTACACGAGGCTTCAATT | 57.304 | 42.857 | 0.00 | 0.00 | 36.71 | 2.32 |
2681 | 3410 | 3.135994 | GTTTCCTTACACGAGGCTTCAA | 58.864 | 45.455 | 0.00 | 0.00 | 36.71 | 2.69 |
2682 | 3411 | 2.367567 | AGTTTCCTTACACGAGGCTTCA | 59.632 | 45.455 | 0.00 | 0.00 | 36.71 | 3.02 |
2683 | 3412 | 2.737252 | CAGTTTCCTTACACGAGGCTTC | 59.263 | 50.000 | 0.00 | 0.00 | 36.71 | 3.86 |
2684 | 3413 | 2.767505 | CAGTTTCCTTACACGAGGCTT | 58.232 | 47.619 | 0.00 | 0.00 | 36.71 | 4.35 |
2685 | 3414 | 1.608283 | GCAGTTTCCTTACACGAGGCT | 60.608 | 52.381 | 0.00 | 0.00 | 36.71 | 4.58 |
2686 | 3415 | 0.796927 | GCAGTTTCCTTACACGAGGC | 59.203 | 55.000 | 0.00 | 0.00 | 36.71 | 4.70 |
2727 | 3456 | 3.473923 | TGAAATGCTCACACACAGAGA | 57.526 | 42.857 | 0.00 | 0.00 | 35.09 | 3.10 |
2728 | 3457 | 4.023450 | ACATTGAAATGCTCACACACAGAG | 60.023 | 41.667 | 2.92 | 0.00 | 40.04 | 3.35 |
2740 | 3471 | 3.763897 | ACTGGGGAGTTACATTGAAATGC | 59.236 | 43.478 | 2.92 | 0.00 | 40.04 | 3.56 |
2898 | 3629 | 5.419542 | ACAAGATTAGCAAGCATCTTCGTA | 58.580 | 37.500 | 5.06 | 0.00 | 37.60 | 3.43 |
2902 | 3633 | 7.031975 | GCTTTAACAAGATTAGCAAGCATCTT | 58.968 | 34.615 | 2.77 | 2.77 | 39.83 | 2.40 |
2924 | 3655 | 7.540474 | TTTAAGGGATCGACTAGATATGCTT | 57.460 | 36.000 | 0.00 | 0.00 | 40.26 | 3.91 |
2941 | 3672 | 6.622833 | TGACGAGTTAAAAGGTTTTAAGGG | 57.377 | 37.500 | 7.71 | 4.04 | 41.66 | 3.95 |
2946 | 3677 | 7.704899 | CCTCATTTTGACGAGTTAAAAGGTTTT | 59.295 | 33.333 | 14.30 | 0.00 | 33.52 | 2.43 |
2961 | 3692 | 3.161866 | TGCCCTTAACCCTCATTTTGAC | 58.838 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
3002 | 3735 | 4.343814 | TGTTGAGATTGTGTAGTCCAGACA | 59.656 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
3013 | 3746 | 5.392380 | GGATGGCTAAACTGTTGAGATTGTG | 60.392 | 44.000 | 9.15 | 0.00 | 0.00 | 3.33 |
3016 | 3749 | 3.941483 | CGGATGGCTAAACTGTTGAGATT | 59.059 | 43.478 | 9.15 | 0.00 | 0.00 | 2.40 |
3021 | 3754 | 2.422597 | TGTCGGATGGCTAAACTGTTG | 58.577 | 47.619 | 0.00 | 0.00 | 0.00 | 3.33 |
3022 | 3755 | 2.851263 | TGTCGGATGGCTAAACTGTT | 57.149 | 45.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3038 | 3771 | 2.350498 | CGGACCGATACAAAACCATGTC | 59.650 | 50.000 | 8.64 | 0.00 | 34.75 | 3.06 |
3068 | 3801 | 4.095610 | GTTTACGAGAAAAATGCATCCGG | 58.904 | 43.478 | 0.00 | 0.00 | 0.00 | 5.14 |
3097 | 3830 | 4.228895 | GGACTCCTAAAATCCCCCAGTTTA | 59.771 | 45.833 | 0.00 | 0.00 | 0.00 | 2.01 |
3102 | 3835 | 1.209621 | CGGACTCCTAAAATCCCCCA | 58.790 | 55.000 | 0.00 | 0.00 | 0.00 | 4.96 |
3108 | 3842 | 3.260884 | TCTGCTGTTCGGACTCCTAAAAT | 59.739 | 43.478 | 0.00 | 0.00 | 0.00 | 1.82 |
3112 | 3846 | 1.174783 | GTCTGCTGTTCGGACTCCTA | 58.825 | 55.000 | 0.00 | 0.00 | 45.52 | 2.94 |
3113 | 3847 | 1.968310 | GTCTGCTGTTCGGACTCCT | 59.032 | 57.895 | 0.00 | 0.00 | 45.52 | 3.69 |
3122 | 3856 | 3.169099 | AGAGTCCTATGTGTCTGCTGTT | 58.831 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
3180 | 3914 | 1.333636 | AAGGAGAGGATGGAGGTGCG | 61.334 | 60.000 | 0.00 | 0.00 | 0.00 | 5.34 |
3189 | 3923 | 4.037222 | GGAAGGAGAGAAAAGGAGAGGAT | 58.963 | 47.826 | 0.00 | 0.00 | 0.00 | 3.24 |
3197 | 3931 | 6.768483 | AGAGAGAAAAGGAAGGAGAGAAAAG | 58.232 | 40.000 | 0.00 | 0.00 | 0.00 | 2.27 |
3225 | 3959 | 2.706446 | TGGTGGACCGATGACGAAAGT | 61.706 | 52.381 | 0.00 | 0.00 | 44.12 | 2.66 |
3283 | 4017 | 0.324943 | CCATTGGAGGTGACGGACTT | 59.675 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3289 | 4023 | 1.339727 | GGGTGTACCATTGGAGGTGAC | 60.340 | 57.143 | 10.37 | 0.14 | 43.14 | 3.67 |
3329 | 4063 | 1.450312 | GTGTGGAATGGCGGAGGAG | 60.450 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
3339 | 4073 | 2.552373 | GGTCGAAGGAAAGGTGTGGAAT | 60.552 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3350 | 4084 | 1.750341 | TTGCACGGAGGTCGAAGGAA | 61.750 | 55.000 | 0.00 | 0.00 | 42.43 | 3.36 |
3369 | 4103 | 5.459505 | AGTATTGTAGGAGCTGATGGTACT | 58.540 | 41.667 | 0.00 | 0.00 | 38.57 | 2.73 |
3404 | 4138 | 2.253603 | GGCATTTCATCGAACAACTGC | 58.746 | 47.619 | 11.45 | 11.45 | 0.00 | 4.40 |
3407 | 4141 | 3.181397 | CATGGGCATTTCATCGAACAAC | 58.819 | 45.455 | 0.00 | 0.00 | 0.00 | 3.32 |
3408 | 4142 | 2.417107 | GCATGGGCATTTCATCGAACAA | 60.417 | 45.455 | 0.00 | 0.00 | 40.72 | 2.83 |
3439 | 4173 | 7.094508 | TCATTGCTTCAAAGTACAAGAAACA | 57.905 | 32.000 | 0.00 | 0.00 | 0.00 | 2.83 |
3449 | 4183 | 8.195436 | CCATATCTGAATTCATTGCTTCAAAGT | 58.805 | 33.333 | 8.96 | 0.00 | 31.40 | 2.66 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.