Multiple sequence alignment - TraesCS4A01G209600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G209600 chr4A 100.000 2600 0 0 1 2600 503237489 503234890 0.000000e+00 4802.0
1 TraesCS4A01G209600 chr4B 91.462 1710 100 16 215 1908 127688639 127686960 0.000000e+00 2307.0
2 TraesCS4A01G209600 chr4B 87.755 343 28 10 2002 2339 127686939 127686606 3.140000e-104 388.0
3 TraesCS4A01G209600 chr4D 94.108 1171 44 10 710 1869 91060798 91059642 0.000000e+00 1757.0
4 TraesCS4A01G209600 chr4D 88.000 500 49 8 214 710 91066452 91065961 4.820000e-162 580.0
5 TraesCS4A01G209600 chr4D 89.604 404 29 10 2002 2404 91059227 91058836 3.860000e-138 501.0
6 TraesCS4A01G209600 chr4D 85.268 224 24 6 1 218 91072453 91072233 3.370000e-54 222.0
7 TraesCS4A01G209600 chr2A 98.658 149 2 0 2450 2598 532018875 532019023 5.520000e-67 265.0
8 TraesCS4A01G209600 chr2A 98.649 148 2 0 2451 2598 11425922 11426069 1.980000e-66 263.0
9 TraesCS4A01G209600 chr2A 76.961 204 40 5 1069 1270 632929001 632928803 2.740000e-20 110.0
10 TraesCS4A01G209600 chr2A 79.433 141 20 7 37 172 199271691 199271555 9.910000e-15 91.6
11 TraesCS4A01G209600 chr2A 97.059 34 1 0 1905 1938 89772289 89772322 1.000000e-04 58.4
12 TraesCS4A01G209600 chr2A 94.595 37 0 2 1907 1941 43155217 43155253 3.610000e-04 56.5
13 TraesCS4A01G209600 chr1A 98.039 153 2 1 2447 2598 442148333 442148181 5.520000e-67 265.0
14 TraesCS4A01G209600 chr1A 97.403 154 4 0 2445 2598 286722454 286722607 1.980000e-66 263.0
15 TraesCS4A01G209600 chr1A 97.403 154 4 0 2445 2598 384506523 384506676 1.980000e-66 263.0
16 TraesCS4A01G209600 chr1A 98.013 151 3 0 2448 2598 546971804 546971654 1.980000e-66 263.0
17 TraesCS4A01G209600 chrUn 98.649 148 2 0 2451 2598 317278155 317278008 1.980000e-66 263.0
18 TraesCS4A01G209600 chr7A 98.649 148 2 0 2451 2598 680926929 680927076 1.980000e-66 263.0
19 TraesCS4A01G209600 chr7A 76.847 203 35 8 380 581 520915849 520915658 1.270000e-18 104.0
20 TraesCS4A01G209600 chr7A 75.148 169 34 7 270 433 520928446 520928281 3.590000e-09 73.1
21 TraesCS4A01G209600 chr7A 97.368 38 1 0 1904 1941 521566720 521566683 6.010000e-07 65.8
22 TraesCS4A01G209600 chr3A 98.649 148 2 0 2453 2600 47194583 47194436 1.980000e-66 263.0
23 TraesCS4A01G209600 chr3A 78.646 192 28 10 379 562 658894284 658894470 5.880000e-22 115.0
24 TraesCS4A01G209600 chr3A 79.675 123 21 3 380 498 443192004 443191882 4.610000e-13 86.1
25 TraesCS4A01G209600 chr3A 97.222 36 0 1 1900 1935 265542802 265542768 2.790000e-05 60.2
26 TraesCS4A01G209600 chr7D 74.925 335 65 15 270 593 475142177 475142503 4.510000e-28 135.0
27 TraesCS4A01G209600 chr6A 78.261 207 32 10 1069 1270 448351793 448351595 1.260000e-23 121.0
28 TraesCS4A01G209600 chr6A 97.059 34 1 0 1904 1937 490264920 490264953 1.000000e-04 58.4
29 TraesCS4A01G209600 chr6D 77.778 207 33 9 1069 1270 311582610 311582412 5.880000e-22 115.0
30 TraesCS4A01G209600 chr6B 73.623 345 67 17 1070 1408 515022088 515022414 7.610000e-21 111.0
31 TraesCS4A01G209600 chr6B 100.000 30 0 0 1906 1935 279013275 279013304 3.610000e-04 56.5
32 TraesCS4A01G209600 chr2D 76.961 204 40 5 1069 1270 488364288 488364090 2.740000e-20 110.0
33 TraesCS4A01G209600 chr2D 76.961 204 40 5 1069 1270 488472349 488472151 2.740000e-20 110.0
34 TraesCS4A01G209600 chr2B 76.961 204 40 5 1069 1270 572678619 572678421 2.740000e-20 110.0
35 TraesCS4A01G209600 chr2B 83.810 105 11 4 397 498 555835613 555835512 7.660000e-16 95.3
36 TraesCS4A01G209600 chr3B 82.243 107 19 0 380 486 425722268 425722162 2.750000e-15 93.5
37 TraesCS4A01G209600 chr5B 86.957 69 9 0 379 447 367907898 367907830 7.710000e-11 78.7
38 TraesCS4A01G209600 chr5B 100.000 30 0 0 1906 1935 532359917 532359946 3.610000e-04 56.5
39 TraesCS4A01G209600 chr3D 97.222 36 0 1 1900 1935 206978501 206978535 2.790000e-05 60.2
40 TraesCS4A01G209600 chr7B 100.000 31 0 0 1911 1941 203279467 203279497 1.000000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G209600 chr4A 503234890 503237489 2599 True 4802.0 4802 100.0000 1 2600 1 chr4A.!!$R1 2599
1 TraesCS4A01G209600 chr4B 127686606 127688639 2033 True 1347.5 2307 89.6085 215 2339 2 chr4B.!!$R1 2124
2 TraesCS4A01G209600 chr4D 91058836 91060798 1962 True 1129.0 1757 91.8560 710 2404 2 chr4D.!!$R3 1694

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
155 156 0.036388 TTCACCGTTCATCCAGGAGC 60.036 55.0 0.0 0.0 0.0 4.7 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1809 1832 0.168788 CACGTGGCAGCTTTACATGG 59.831 55.0 7.95 0.0 0.0 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 5.913137 TTTTTATCACGCCTTCCATCAAT 57.087 34.783 0.00 0.00 0.00 2.57
39 40 4.898829 TTTATCACGCCTTCCATCAATG 57.101 40.909 0.00 0.00 0.00 2.82
40 41 2.425143 ATCACGCCTTCCATCAATGT 57.575 45.000 0.00 0.00 0.00 2.71
41 42 1.452110 TCACGCCTTCCATCAATGTG 58.548 50.000 0.00 0.00 0.00 3.21
42 43 1.003003 TCACGCCTTCCATCAATGTGA 59.997 47.619 0.00 0.00 32.93 3.58
43 44 2.019249 CACGCCTTCCATCAATGTGAT 58.981 47.619 0.00 0.00 37.65 3.06
44 45 2.424601 CACGCCTTCCATCAATGTGATT 59.575 45.455 0.00 0.00 34.28 2.57
45 46 3.091545 ACGCCTTCCATCAATGTGATTT 58.908 40.909 0.00 0.00 34.28 2.17
46 47 3.129287 ACGCCTTCCATCAATGTGATTTC 59.871 43.478 0.00 0.00 34.28 2.17
47 48 3.129113 CGCCTTCCATCAATGTGATTTCA 59.871 43.478 0.00 0.00 34.28 2.69
48 49 4.202080 CGCCTTCCATCAATGTGATTTCAT 60.202 41.667 0.00 0.00 34.28 2.57
49 50 5.047847 GCCTTCCATCAATGTGATTTCATG 58.952 41.667 0.00 0.00 34.28 3.07
50 51 5.163488 GCCTTCCATCAATGTGATTTCATGA 60.163 40.000 0.00 0.00 34.28 3.07
51 52 6.270815 CCTTCCATCAATGTGATTTCATGAC 58.729 40.000 0.00 0.00 34.28 3.06
52 53 5.488645 TCCATCAATGTGATTTCATGACG 57.511 39.130 0.00 0.00 34.28 4.35
53 54 5.184711 TCCATCAATGTGATTTCATGACGA 58.815 37.500 0.00 0.00 34.28 4.20
54 55 5.647225 TCCATCAATGTGATTTCATGACGAA 59.353 36.000 0.00 0.00 34.28 3.85
56 57 6.807720 CCATCAATGTGATTTCATGACGAAAA 59.192 34.615 0.00 0.00 46.48 2.29
57 58 7.201376 CCATCAATGTGATTTCATGACGAAAAC 60.201 37.037 0.00 0.00 46.48 2.43
58 59 6.969366 TCAATGTGATTTCATGACGAAAACT 58.031 32.000 0.00 0.00 46.48 2.66
59 60 7.424803 TCAATGTGATTTCATGACGAAAACTT 58.575 30.769 0.00 0.00 46.48 2.66
60 61 8.563732 TCAATGTGATTTCATGACGAAAACTTA 58.436 29.630 0.00 0.00 46.48 2.24
61 62 8.629986 CAATGTGATTTCATGACGAAAACTTAC 58.370 33.333 0.00 0.00 46.48 2.34
62 63 7.252965 TGTGATTTCATGACGAAAACTTACA 57.747 32.000 0.00 0.00 46.48 2.41
63 64 7.870826 TGTGATTTCATGACGAAAACTTACAT 58.129 30.769 0.00 0.00 46.48 2.29
64 65 7.802720 TGTGATTTCATGACGAAAACTTACATG 59.197 33.333 0.00 0.00 46.48 3.21
65 66 6.801377 TGATTTCATGACGAAAACTTACATGC 59.199 34.615 0.00 0.00 46.48 4.06
66 67 5.681337 TTCATGACGAAAACTTACATGCA 57.319 34.783 0.00 0.00 38.39 3.96
67 68 5.681337 TCATGACGAAAACTTACATGCAA 57.319 34.783 0.00 0.00 38.39 4.08
68 69 6.252967 TCATGACGAAAACTTACATGCAAT 57.747 33.333 0.00 0.00 38.39 3.56
69 70 6.676950 TCATGACGAAAACTTACATGCAATT 58.323 32.000 0.00 0.00 38.39 2.32
70 71 6.801377 TCATGACGAAAACTTACATGCAATTC 59.199 34.615 0.00 0.00 38.39 2.17
71 72 6.066054 TGACGAAAACTTACATGCAATTCA 57.934 33.333 0.00 0.00 0.00 2.57
72 73 6.499172 TGACGAAAACTTACATGCAATTCAA 58.501 32.000 0.00 0.00 0.00 2.69
73 74 6.975197 TGACGAAAACTTACATGCAATTCAAA 59.025 30.769 0.00 0.00 0.00 2.69
74 75 7.043722 TGACGAAAACTTACATGCAATTCAAAC 60.044 33.333 0.00 0.00 0.00 2.93
75 76 6.754209 ACGAAAACTTACATGCAATTCAAACA 59.246 30.769 0.00 0.00 0.00 2.83
76 77 7.437862 ACGAAAACTTACATGCAATTCAAACAT 59.562 29.630 0.00 0.00 0.00 2.71
77 78 8.274939 CGAAAACTTACATGCAATTCAAACATT 58.725 29.630 0.00 0.00 0.00 2.71
78 79 9.934190 GAAAACTTACATGCAATTCAAACATTT 57.066 25.926 0.00 0.00 0.00 2.32
79 80 9.934190 AAAACTTACATGCAATTCAAACATTTC 57.066 25.926 0.00 0.00 0.00 2.17
80 81 8.891671 AACTTACATGCAATTCAAACATTTCT 57.108 26.923 0.00 0.00 0.00 2.52
81 82 8.891671 ACTTACATGCAATTCAAACATTTCTT 57.108 26.923 0.00 0.00 0.00 2.52
82 83 9.979578 ACTTACATGCAATTCAAACATTTCTTA 57.020 25.926 0.00 0.00 0.00 2.10
86 87 9.328845 ACATGCAATTCAAACATTTCTTAAAGT 57.671 25.926 0.00 0.00 0.00 2.66
90 91 8.946935 GCAATTCAAACATTTCTTAAAGTTTGC 58.053 29.630 10.94 0.00 46.23 3.68
91 92 9.437045 CAATTCAAACATTTCTTAAAGTTTGCC 57.563 29.630 10.94 0.00 46.23 4.52
92 93 8.729805 ATTCAAACATTTCTTAAAGTTTGCCA 57.270 26.923 10.94 2.72 46.23 4.92
93 94 7.532682 TCAAACATTTCTTAAAGTTTGCCAC 57.467 32.000 10.94 0.00 46.23 5.01
94 95 7.099764 TCAAACATTTCTTAAAGTTTGCCACA 58.900 30.769 10.94 0.00 46.23 4.17
95 96 6.902224 AACATTTCTTAAAGTTTGCCACAC 57.098 33.333 0.00 0.00 0.00 3.82
96 97 5.971763 ACATTTCTTAAAGTTTGCCACACA 58.028 33.333 0.00 0.00 0.00 3.72
97 98 6.402222 ACATTTCTTAAAGTTTGCCACACAA 58.598 32.000 0.00 0.00 36.13 3.33
98 99 6.876257 ACATTTCTTAAAGTTTGCCACACAAA 59.124 30.769 0.00 0.00 46.01 2.83
150 151 5.521906 TTTTTGAATTCACCGTTCATCCA 57.478 34.783 7.89 0.00 35.68 3.41
151 152 4.764679 TTTGAATTCACCGTTCATCCAG 57.235 40.909 7.89 0.00 35.68 3.86
152 153 2.710377 TGAATTCACCGTTCATCCAGG 58.290 47.619 3.38 0.00 31.07 4.45
153 154 2.304470 TGAATTCACCGTTCATCCAGGA 59.696 45.455 3.38 0.00 31.07 3.86
154 155 2.698855 ATTCACCGTTCATCCAGGAG 57.301 50.000 0.00 0.00 0.00 3.69
155 156 0.036388 TTCACCGTTCATCCAGGAGC 60.036 55.000 0.00 0.00 0.00 4.70
156 157 1.191489 TCACCGTTCATCCAGGAGCA 61.191 55.000 0.00 0.00 0.00 4.26
157 158 0.107508 CACCGTTCATCCAGGAGCAT 60.108 55.000 0.00 0.00 0.00 3.79
158 159 0.620556 ACCGTTCATCCAGGAGCATT 59.379 50.000 0.00 0.00 0.00 3.56
159 160 1.837439 ACCGTTCATCCAGGAGCATTA 59.163 47.619 0.00 0.00 0.00 1.90
160 161 2.158900 ACCGTTCATCCAGGAGCATTAG 60.159 50.000 0.00 0.00 0.00 1.73
161 162 1.869767 CGTTCATCCAGGAGCATTAGC 59.130 52.381 0.00 0.00 42.56 3.09
177 178 6.446659 GCATTAGCTCGAGATTAGAAACTC 57.553 41.667 18.75 0.00 37.91 3.01
178 179 5.404066 GCATTAGCTCGAGATTAGAAACTCC 59.596 44.000 18.75 0.00 37.91 3.85
179 180 6.507900 CATTAGCTCGAGATTAGAAACTCCA 58.492 40.000 18.75 0.00 0.00 3.86
180 181 4.379339 AGCTCGAGATTAGAAACTCCAC 57.621 45.455 18.75 0.00 0.00 4.02
181 182 3.109619 GCTCGAGATTAGAAACTCCACG 58.890 50.000 18.75 0.00 0.00 4.94
182 183 3.109619 CTCGAGATTAGAAACTCCACGC 58.890 50.000 6.58 0.00 0.00 5.34
183 184 2.159282 TCGAGATTAGAAACTCCACGCC 60.159 50.000 0.00 0.00 0.00 5.68
184 185 2.552031 GAGATTAGAAACTCCACGCCC 58.448 52.381 0.00 0.00 0.00 6.13
185 186 1.906574 AGATTAGAAACTCCACGCCCA 59.093 47.619 0.00 0.00 0.00 5.36
186 187 2.093447 AGATTAGAAACTCCACGCCCAG 60.093 50.000 0.00 0.00 0.00 4.45
187 188 0.323629 TTAGAAACTCCACGCCCAGG 59.676 55.000 0.00 0.00 0.00 4.45
188 189 0.543410 TAGAAACTCCACGCCCAGGA 60.543 55.000 0.00 0.00 0.00 3.86
189 190 1.072505 GAAACTCCACGCCCAGGAA 59.927 57.895 0.00 0.00 34.08 3.36
190 191 0.955919 GAAACTCCACGCCCAGGAAG 60.956 60.000 0.00 0.00 34.08 3.46
191 192 1.415672 AAACTCCACGCCCAGGAAGA 61.416 55.000 0.00 0.00 34.08 2.87
192 193 1.415672 AACTCCACGCCCAGGAAGAA 61.416 55.000 0.00 0.00 34.08 2.52
193 194 1.078848 CTCCACGCCCAGGAAGAAG 60.079 63.158 0.00 0.00 34.08 2.85
194 195 2.045926 CCACGCCCAGGAAGAAGG 60.046 66.667 0.00 0.00 0.00 3.46
195 196 2.747855 CACGCCCAGGAAGAAGGC 60.748 66.667 0.00 0.00 43.53 4.35
196 197 4.035102 ACGCCCAGGAAGAAGGCC 62.035 66.667 0.00 0.00 44.13 5.19
197 198 4.803908 CGCCCAGGAAGAAGGCCC 62.804 72.222 0.00 0.00 44.13 5.80
198 199 3.342477 GCCCAGGAAGAAGGCCCT 61.342 66.667 0.00 0.00 41.00 5.19
199 200 2.923910 GCCCAGGAAGAAGGCCCTT 61.924 63.158 0.00 0.00 41.00 3.95
200 201 1.776969 CCCAGGAAGAAGGCCCTTT 59.223 57.895 0.00 0.00 0.00 3.11
201 202 0.115152 CCCAGGAAGAAGGCCCTTTT 59.885 55.000 0.00 0.00 0.00 2.27
202 203 1.550327 CCAGGAAGAAGGCCCTTTTC 58.450 55.000 0.00 3.82 0.00 2.29
203 204 1.076187 CCAGGAAGAAGGCCCTTTTCT 59.924 52.381 0.00 0.00 36.49 2.52
204 205 2.165998 CAGGAAGAAGGCCCTTTTCTG 58.834 52.381 6.50 6.03 35.20 3.02
205 206 1.076187 AGGAAGAAGGCCCTTTTCTGG 59.924 52.381 6.50 0.00 35.20 3.86
230 231 0.817634 CAACCGGTCAGCTTTGGTGA 60.818 55.000 8.04 0.00 37.74 4.02
247 248 2.103094 GGTGACCGATTGATCCATCTCA 59.897 50.000 5.34 0.87 0.00 3.27
251 252 5.297776 GTGACCGATTGATCCATCTCAATTT 59.702 40.000 5.34 0.00 44.00 1.82
253 254 5.439721 ACCGATTGATCCATCTCAATTTGA 58.560 37.500 5.34 0.00 44.00 2.69
257 258 6.570672 ATTGATCCATCTCAATTTGATCGG 57.429 37.500 0.00 1.56 41.89 4.18
258 259 3.817084 TGATCCATCTCAATTTGATCGGC 59.183 43.478 0.00 0.00 35.67 5.54
262 263 4.336433 TCCATCTCAATTTGATCGGCTTTC 59.664 41.667 0.00 0.00 0.00 2.62
281 282 6.072893 GGCTTTCGTGTTCTTTGGAGTATTTA 60.073 38.462 0.00 0.00 0.00 1.40
282 283 6.795593 GCTTTCGTGTTCTTTGGAGTATTTAC 59.204 38.462 0.00 0.00 0.00 2.01
284 285 7.972832 TTCGTGTTCTTTGGAGTATTTACAT 57.027 32.000 0.00 0.00 0.00 2.29
292 293 8.268850 TCTTTGGAGTATTTACATGCTCTTTC 57.731 34.615 6.88 0.00 40.91 2.62
308 309 0.396435 TTTCGGCCTCTTCTTCTGCA 59.604 50.000 0.00 0.00 0.00 4.41
310 311 0.900182 TCGGCCTCTTCTTCTGCAGA 60.900 55.000 13.74 13.74 0.00 4.26
332 333 0.503117 GCGATTTGCGACGTAGATCC 59.497 55.000 10.16 1.40 44.57 3.36
338 339 2.475466 GCGACGTAGATCCCGGACA 61.475 63.158 0.73 0.00 0.00 4.02
339 340 1.647629 CGACGTAGATCCCGGACAG 59.352 63.158 0.73 0.00 0.00 3.51
347 348 0.100861 GATCCCGGACAGACGTCTTC 59.899 60.000 17.26 15.97 42.21 2.87
368 369 4.546674 TCTGACCTACATAGATGGCTTCA 58.453 43.478 3.03 0.00 0.00 3.02
369 370 5.150715 TCTGACCTACATAGATGGCTTCAT 58.849 41.667 3.03 0.00 0.00 2.57
394 395 3.005554 CACCACTTCTACAAGCTCATGG 58.994 50.000 0.00 0.00 32.09 3.66
395 396 2.026822 ACCACTTCTACAAGCTCATGGG 60.027 50.000 0.00 0.00 29.81 4.00
409 410 5.600696 AGCTCATGGGTTTAAACAAGTTTG 58.399 37.500 19.57 9.43 34.23 2.93
414 415 4.425520 TGGGTTTAAACAAGTTTGCTTCG 58.574 39.130 19.57 0.00 34.23 3.79
415 416 4.082136 TGGGTTTAAACAAGTTTGCTTCGT 60.082 37.500 19.57 0.00 34.23 3.85
416 417 4.865925 GGGTTTAAACAAGTTTGCTTCGTT 59.134 37.500 19.57 0.00 34.23 3.85
417 418 5.220322 GGGTTTAAACAAGTTTGCTTCGTTG 60.220 40.000 19.57 0.00 34.23 4.10
418 419 5.573669 GGTTTAAACAAGTTTGCTTCGTTGA 59.426 36.000 19.57 0.00 34.23 3.18
419 420 6.237463 GGTTTAAACAAGTTTGCTTCGTTGAG 60.237 38.462 19.57 0.00 34.23 3.02
420 421 3.420839 AACAAGTTTGCTTCGTTGAGG 57.579 42.857 0.00 0.00 31.49 3.86
421 422 1.065551 ACAAGTTTGCTTCGTTGAGGC 59.934 47.619 0.00 0.00 35.17 4.70
422 423 0.307760 AAGTTTGCTTCGTTGAGGCG 59.692 50.000 0.00 0.00 37.47 5.52
423 424 1.082104 GTTTGCTTCGTTGAGGCGG 60.082 57.895 0.00 0.00 37.47 6.13
424 425 1.227704 TTTGCTTCGTTGAGGCGGA 60.228 52.632 0.00 0.00 37.47 5.54
462 463 1.537202 GAGCTTTGTTCACGAGGCATT 59.463 47.619 4.27 0.00 35.06 3.56
464 465 1.689959 CTTTGTTCACGAGGCATTGC 58.310 50.000 0.00 0.00 0.00 3.56
474 475 4.211502 GGCATTGCCGGTGGATGC 62.212 66.667 22.45 22.45 44.06 3.91
475 476 4.211502 GCATTGCCGGTGGATGCC 62.212 66.667 20.92 8.91 40.10 4.40
497 498 3.601435 GGAGGAAGAAGACTTTAGCACC 58.399 50.000 0.00 0.00 36.39 5.01
499 500 4.323868 GGAGGAAGAAGACTTTAGCACCAT 60.324 45.833 0.00 0.00 36.39 3.55
505 506 7.390718 GGAAGAAGACTTTAGCACCATTAAGAA 59.609 37.037 0.00 0.00 36.39 2.52
508 509 9.301897 AGAAGACTTTAGCACCATTAAGAATTT 57.698 29.630 0.00 0.00 0.00 1.82
552 554 5.365619 AGGGTGTGTTTGTAAGTACTTCTG 58.634 41.667 12.39 0.00 0.00 3.02
647 652 8.893563 AAACATCTAATTCCCACATTTCCTAA 57.106 30.769 0.00 0.00 0.00 2.69
662 667 6.605594 ACATTTCCTAAGAACACCAGAACAAA 59.394 34.615 0.00 0.00 0.00 2.83
664 669 8.792633 CATTTCCTAAGAACACCAGAACAAATA 58.207 33.333 0.00 0.00 0.00 1.40
667 672 5.699458 CCTAAGAACACCAGAACAAATACGT 59.301 40.000 0.00 0.00 0.00 3.57
669 674 6.535274 AAGAACACCAGAACAAATACGTAC 57.465 37.500 0.00 0.00 0.00 3.67
670 675 4.682860 AGAACACCAGAACAAATACGTACG 59.317 41.667 15.01 15.01 0.00 3.67
671 676 4.241590 ACACCAGAACAAATACGTACGA 57.758 40.909 24.41 6.04 0.00 3.43
672 677 4.619973 ACACCAGAACAAATACGTACGAA 58.380 39.130 24.41 0.00 0.00 3.85
673 678 5.049167 ACACCAGAACAAATACGTACGAAA 58.951 37.500 24.41 10.02 0.00 3.46
703 708 7.878477 AATGATGTCAAAAGCACATAAACTG 57.122 32.000 0.00 0.00 34.49 3.16
787 798 1.800586 AGACGTCACATTGTGCATCAC 59.199 47.619 19.50 4.30 32.98 3.06
788 799 1.800586 GACGTCACATTGTGCATCACT 59.199 47.619 11.55 0.00 35.11 3.41
789 800 2.993220 GACGTCACATTGTGCATCACTA 59.007 45.455 11.55 0.00 35.11 2.74
790 801 2.736721 ACGTCACATTGTGCATCACTAC 59.263 45.455 12.04 2.57 35.11 2.73
791 802 2.736192 CGTCACATTGTGCATCACTACA 59.264 45.455 12.04 0.00 35.11 2.74
792 803 3.181527 CGTCACATTGTGCATCACTACAG 60.182 47.826 12.04 0.00 35.11 2.74
793 804 3.996363 GTCACATTGTGCATCACTACAGA 59.004 43.478 12.04 0.00 35.11 3.41
794 805 4.633126 GTCACATTGTGCATCACTACAGAT 59.367 41.667 12.04 0.00 35.11 2.90
795 806 5.812127 GTCACATTGTGCATCACTACAGATA 59.188 40.000 12.04 0.00 35.11 1.98
796 807 5.812127 TCACATTGTGCATCACTACAGATAC 59.188 40.000 12.04 0.00 35.11 2.24
797 808 5.814188 CACATTGTGCATCACTACAGATACT 59.186 40.000 3.43 0.00 35.11 2.12
798 809 5.814188 ACATTGTGCATCACTACAGATACTG 59.186 40.000 0.00 0.00 35.11 2.74
821 832 7.124573 TGCTACAGATGTTACCTTCACATAT 57.875 36.000 0.00 0.00 34.89 1.78
822 833 8.245195 TGCTACAGATGTTACCTTCACATATA 57.755 34.615 0.00 0.00 34.89 0.86
827 838 7.385205 ACAGATGTTACCTTCACATATAATCGC 59.615 37.037 0.00 0.00 34.89 4.58
851 862 2.329678 CTGCTCTACTGCCTCGTCGG 62.330 65.000 0.00 0.00 0.00 4.79
869 880 5.105106 TCGTCGGTATATATACGGGGTCTTA 60.105 44.000 22.99 6.81 36.08 2.10
1122 1134 2.680352 GGCCTCGTCTCCACCTCA 60.680 66.667 0.00 0.00 0.00 3.86
1553 1565 2.124151 AGGATTGGTGGCGATGGC 60.124 61.111 0.00 0.00 38.90 4.40
1563 1575 2.421739 GCGATGGCGGTCACCTAT 59.578 61.111 0.00 0.00 38.16 2.57
1716 1735 1.305219 TAGGTGAATTGCCTGCGTGC 61.305 55.000 8.09 0.00 37.54 5.34
1737 1756 3.065925 GCTTAGCAAATCCTAGCTTGTGG 59.934 47.826 0.00 0.00 42.05 4.17
1809 1832 1.433534 AAGCACTCTAACGCTCTTGC 58.566 50.000 0.00 0.00 37.54 4.01
1849 1872 6.127423 ACGTGAGTAGCAATACAAGGTATTCT 60.127 38.462 0.00 3.55 46.88 2.40
1920 2298 9.403583 TGTTATATCAAAAACAATACTCCCTCC 57.596 33.333 0.00 0.00 32.86 4.30
1921 2299 8.557029 GTTATATCAAAAACAATACTCCCTCCG 58.443 37.037 0.00 0.00 0.00 4.63
1922 2300 4.360951 TCAAAAACAATACTCCCTCCGT 57.639 40.909 0.00 0.00 0.00 4.69
1923 2301 5.486735 TCAAAAACAATACTCCCTCCGTA 57.513 39.130 0.00 0.00 0.00 4.02
1924 2302 5.867330 TCAAAAACAATACTCCCTCCGTAA 58.133 37.500 0.00 0.00 0.00 3.18
1925 2303 6.297582 TCAAAAACAATACTCCCTCCGTAAA 58.702 36.000 0.00 0.00 0.00 2.01
1926 2304 6.428771 TCAAAAACAATACTCCCTCCGTAAAG 59.571 38.462 0.00 0.00 0.00 1.85
1927 2305 5.750352 AAACAATACTCCCTCCGTAAAGA 57.250 39.130 0.00 0.00 0.00 2.52
1928 2306 5.750352 AACAATACTCCCTCCGTAAAGAA 57.250 39.130 0.00 0.00 0.00 2.52
1929 2307 5.750352 ACAATACTCCCTCCGTAAAGAAA 57.250 39.130 0.00 0.00 0.00 2.52
1930 2308 6.309389 ACAATACTCCCTCCGTAAAGAAAT 57.691 37.500 0.00 0.00 0.00 2.17
1931 2309 7.427989 ACAATACTCCCTCCGTAAAGAAATA 57.572 36.000 0.00 0.00 0.00 1.40
1932 2310 8.030913 ACAATACTCCCTCCGTAAAGAAATAT 57.969 34.615 0.00 0.00 0.00 1.28
1933 2311 9.151177 ACAATACTCCCTCCGTAAAGAAATATA 57.849 33.333 0.00 0.00 0.00 0.86
1934 2312 9.991906 CAATACTCCCTCCGTAAAGAAATATAA 57.008 33.333 0.00 0.00 0.00 0.98
1938 2316 9.916360 ACTCCCTCCGTAAAGAAATATAAAAAT 57.084 29.630 0.00 0.00 0.00 1.82
1940 2318 9.689501 TCCCTCCGTAAAGAAATATAAAAATGT 57.310 29.630 0.00 0.00 0.00 2.71
1991 2369 8.525290 ACATTTCTTTATGGAGGGAGTAATTG 57.475 34.615 0.00 0.00 0.00 2.32
1993 2371 8.971073 CATTTCTTTATGGAGGGAGTAATTGTT 58.029 33.333 0.00 0.00 0.00 2.83
2317 2700 8.718102 TTATTAGTAGCAATGACAAAGGAGTC 57.282 34.615 0.00 0.00 38.99 3.36
2329 2712 5.652014 TGACAAAGGAGTCATTTGAGTGTTT 59.348 36.000 30.89 11.97 43.18 2.83
2340 2723 2.031258 TGAGTGTTTCAGGTTGCGAA 57.969 45.000 0.00 0.00 0.00 4.70
2343 2726 3.380004 TGAGTGTTTCAGGTTGCGAAAAT 59.620 39.130 0.00 0.00 34.32 1.82
2349 2732 6.200097 GTGTTTCAGGTTGCGAAAATGTAAAT 59.800 34.615 0.00 0.00 34.32 1.40
2367 2750 8.995027 ATGTAAATGATAGCAAGAATTACCCA 57.005 30.769 0.00 0.00 0.00 4.51
2406 2790 4.550076 AGTATTGAAGAGAGCAAGCAGT 57.450 40.909 0.00 0.00 0.00 4.40
2407 2791 5.667539 AGTATTGAAGAGAGCAAGCAGTA 57.332 39.130 0.00 0.00 0.00 2.74
2408 2792 6.232581 AGTATTGAAGAGAGCAAGCAGTAT 57.767 37.500 0.00 0.00 0.00 2.12
2409 2793 6.648192 AGTATTGAAGAGAGCAAGCAGTATT 58.352 36.000 0.00 0.00 0.00 1.89
2410 2794 7.108847 AGTATTGAAGAGAGCAAGCAGTATTT 58.891 34.615 0.00 0.00 0.00 1.40
2411 2795 8.260818 AGTATTGAAGAGAGCAAGCAGTATTTA 58.739 33.333 0.00 0.00 0.00 1.40
2412 2796 6.974932 TTGAAGAGAGCAAGCAGTATTTAG 57.025 37.500 0.00 0.00 0.00 1.85
2413 2797 6.286240 TGAAGAGAGCAAGCAGTATTTAGA 57.714 37.500 0.00 0.00 0.00 2.10
2414 2798 6.701340 TGAAGAGAGCAAGCAGTATTTAGAA 58.299 36.000 0.00 0.00 0.00 2.10
2415 2799 6.815641 TGAAGAGAGCAAGCAGTATTTAGAAG 59.184 38.462 0.00 0.00 0.00 2.85
2416 2800 5.115480 AGAGAGCAAGCAGTATTTAGAAGC 58.885 41.667 0.00 0.00 0.00 3.86
2417 2801 3.868077 AGAGCAAGCAGTATTTAGAAGCG 59.132 43.478 0.00 0.00 0.00 4.68
2418 2802 3.600388 AGCAAGCAGTATTTAGAAGCGT 58.400 40.909 0.00 0.00 0.00 5.07
2419 2803 3.372206 AGCAAGCAGTATTTAGAAGCGTG 59.628 43.478 0.00 0.00 37.66 5.34
2420 2804 3.485877 GCAAGCAGTATTTAGAAGCGTGG 60.486 47.826 0.00 0.00 35.68 4.94
2421 2805 2.280628 AGCAGTATTTAGAAGCGTGGC 58.719 47.619 0.00 0.00 0.00 5.01
2422 2806 2.006888 GCAGTATTTAGAAGCGTGGCA 58.993 47.619 0.00 0.00 0.00 4.92
2423 2807 2.614057 GCAGTATTTAGAAGCGTGGCAT 59.386 45.455 0.00 0.00 0.00 4.40
2424 2808 3.546815 GCAGTATTTAGAAGCGTGGCATG 60.547 47.826 1.31 1.31 0.00 4.06
2425 2809 3.002656 CAGTATTTAGAAGCGTGGCATGG 59.997 47.826 9.08 0.00 0.00 3.66
2426 2810 2.418368 ATTTAGAAGCGTGGCATGGA 57.582 45.000 9.08 0.00 0.00 3.41
2427 2811 2.192664 TTTAGAAGCGTGGCATGGAA 57.807 45.000 9.08 0.00 0.00 3.53
2428 2812 2.192664 TTAGAAGCGTGGCATGGAAA 57.807 45.000 9.08 0.00 0.00 3.13
2429 2813 2.418368 TAGAAGCGTGGCATGGAAAT 57.582 45.000 9.08 0.00 0.00 2.17
2430 2814 0.813184 AGAAGCGTGGCATGGAAATG 59.187 50.000 9.08 0.00 0.00 2.32
2431 2815 0.179129 GAAGCGTGGCATGGAAATGG 60.179 55.000 9.08 0.00 0.00 3.16
2432 2816 0.611618 AAGCGTGGCATGGAAATGGA 60.612 50.000 9.08 0.00 0.00 3.41
2433 2817 0.396139 AGCGTGGCATGGAAATGGAT 60.396 50.000 9.08 0.00 0.00 3.41
2434 2818 1.133823 AGCGTGGCATGGAAATGGATA 60.134 47.619 9.08 0.00 0.00 2.59
2435 2819 1.888512 GCGTGGCATGGAAATGGATAT 59.111 47.619 9.08 0.00 0.00 1.63
2436 2820 2.297033 GCGTGGCATGGAAATGGATATT 59.703 45.455 9.08 0.00 0.00 1.28
2437 2821 3.858129 GCGTGGCATGGAAATGGATATTG 60.858 47.826 9.08 0.00 0.00 1.90
2438 2822 3.305539 CGTGGCATGGAAATGGATATTGG 60.306 47.826 0.00 0.00 0.00 3.16
2439 2823 3.896888 GTGGCATGGAAATGGATATTGGA 59.103 43.478 0.00 0.00 0.00 3.53
2440 2824 4.344679 GTGGCATGGAAATGGATATTGGAA 59.655 41.667 0.00 0.00 0.00 3.53
2441 2825 4.344679 TGGCATGGAAATGGATATTGGAAC 59.655 41.667 0.00 0.00 0.00 3.62
2442 2826 4.549458 GCATGGAAATGGATATTGGAACG 58.451 43.478 0.00 0.00 0.00 3.95
2443 2827 4.037923 GCATGGAAATGGATATTGGAACGT 59.962 41.667 0.00 0.00 0.00 3.99
2444 2828 5.451798 GCATGGAAATGGATATTGGAACGTT 60.452 40.000 0.00 0.00 0.00 3.99
2445 2829 5.574891 TGGAAATGGATATTGGAACGTTG 57.425 39.130 5.00 0.00 0.00 4.10
2446 2830 4.142271 TGGAAATGGATATTGGAACGTTGC 60.142 41.667 13.47 13.47 0.00 4.17
2447 2831 4.142271 GGAAATGGATATTGGAACGTTGCA 60.142 41.667 19.24 19.24 0.00 4.08
2448 2832 5.451798 GGAAATGGATATTGGAACGTTGCAT 60.452 40.000 23.52 15.05 0.00 3.96
2449 2833 4.572985 ATGGATATTGGAACGTTGCATG 57.427 40.909 23.52 0.00 0.00 4.06
2450 2834 3.351740 TGGATATTGGAACGTTGCATGT 58.648 40.909 23.52 16.73 0.00 3.21
2451 2835 4.518249 TGGATATTGGAACGTTGCATGTA 58.482 39.130 23.52 18.23 0.00 2.29
2452 2836 5.129634 TGGATATTGGAACGTTGCATGTAT 58.870 37.500 23.52 21.61 0.00 2.29
2453 2837 5.592282 TGGATATTGGAACGTTGCATGTATT 59.408 36.000 23.52 7.09 0.00 1.89
2454 2838 5.914635 GGATATTGGAACGTTGCATGTATTG 59.085 40.000 23.52 0.00 0.00 1.90
2455 2839 4.782019 ATTGGAACGTTGCATGTATTGT 57.218 36.364 23.52 1.61 0.00 2.71
2456 2840 4.576216 TTGGAACGTTGCATGTATTGTT 57.424 36.364 23.52 0.00 0.00 2.83
2457 2841 3.894920 TGGAACGTTGCATGTATTGTTG 58.105 40.909 19.24 0.00 0.00 3.33
2458 2842 3.241701 GGAACGTTGCATGTATTGTTGG 58.758 45.455 15.52 0.00 0.00 3.77
2459 2843 3.057876 GGAACGTTGCATGTATTGTTGGA 60.058 43.478 15.52 0.00 0.00 3.53
2460 2844 4.541779 GAACGTTGCATGTATTGTTGGAA 58.458 39.130 5.00 0.00 0.00 3.53
2461 2845 4.576216 ACGTTGCATGTATTGTTGGAAA 57.424 36.364 0.00 0.00 0.00 3.13
2462 2846 5.132897 ACGTTGCATGTATTGTTGGAAAT 57.867 34.783 0.00 0.00 0.00 2.17
2463 2847 6.260870 ACGTTGCATGTATTGTTGGAAATA 57.739 33.333 0.00 0.00 0.00 1.40
2464 2848 6.862209 ACGTTGCATGTATTGTTGGAAATAT 58.138 32.000 0.00 0.00 0.00 1.28
2465 2849 6.751425 ACGTTGCATGTATTGTTGGAAATATG 59.249 34.615 0.00 0.00 0.00 1.78
2466 2850 6.291743 CGTTGCATGTATTGTTGGAAATATGC 60.292 38.462 0.00 0.00 32.40 3.14
2467 2851 5.599732 TGCATGTATTGTTGGAAATATGCC 58.400 37.500 0.00 0.00 31.44 4.40
2468 2852 4.990426 GCATGTATTGTTGGAAATATGCCC 59.010 41.667 0.00 0.00 28.39 5.36
2469 2853 5.221501 GCATGTATTGTTGGAAATATGCCCT 60.222 40.000 0.00 0.00 28.39 5.19
2470 2854 6.015519 GCATGTATTGTTGGAAATATGCCCTA 60.016 38.462 0.00 0.00 28.39 3.53
2471 2855 7.596494 CATGTATTGTTGGAAATATGCCCTAG 58.404 38.462 0.00 0.00 0.00 3.02
2472 2856 6.905736 TGTATTGTTGGAAATATGCCCTAGA 58.094 36.000 0.00 0.00 0.00 2.43
2473 2857 6.998074 TGTATTGTTGGAAATATGCCCTAGAG 59.002 38.462 0.00 0.00 0.00 2.43
2474 2858 4.437682 TGTTGGAAATATGCCCTAGAGG 57.562 45.455 0.00 0.00 39.47 3.69
2567 2951 8.651391 TTATTCGGAAATCGTAATACATGTGT 57.349 30.769 9.11 0.00 40.32 3.72
2568 2952 5.959652 TCGGAAATCGTAATACATGTGTG 57.040 39.130 9.11 0.00 40.32 3.82
2569 2953 5.652518 TCGGAAATCGTAATACATGTGTGA 58.347 37.500 9.11 0.00 40.32 3.58
2570 2954 6.100668 TCGGAAATCGTAATACATGTGTGAA 58.899 36.000 9.11 0.00 40.32 3.18
2571 2955 6.759356 TCGGAAATCGTAATACATGTGTGAAT 59.241 34.615 9.11 0.00 40.32 2.57
2572 2956 7.921745 TCGGAAATCGTAATACATGTGTGAATA 59.078 33.333 9.11 0.00 40.32 1.75
2573 2957 8.002107 CGGAAATCGTAATACATGTGTGAATAC 58.998 37.037 9.11 0.76 0.00 1.89
2574 2958 8.822855 GGAAATCGTAATACATGTGTGAATACA 58.177 33.333 9.11 0.00 34.63 2.29
2578 2962 9.639601 ATCGTAATACATGTGTGAATACATAGG 57.360 33.333 9.11 0.00 39.17 2.57
2579 2963 7.597369 TCGTAATACATGTGTGAATACATAGGC 59.403 37.037 9.11 0.00 39.17 3.93
2580 2964 7.148639 CGTAATACATGTGTGAATACATAGGCC 60.149 40.741 9.11 0.00 39.17 5.19
2581 2965 4.502105 ACATGTGTGAATACATAGGCCA 57.498 40.909 5.01 0.00 39.17 5.36
2582 2966 4.199310 ACATGTGTGAATACATAGGCCAC 58.801 43.478 5.01 0.00 39.17 5.01
2583 2967 3.990959 TGTGTGAATACATAGGCCACA 57.009 42.857 5.01 0.00 39.39 4.17
2584 2968 4.293662 TGTGTGAATACATAGGCCACAA 57.706 40.909 5.01 0.00 39.13 3.33
2585 2969 4.854173 TGTGTGAATACATAGGCCACAAT 58.146 39.130 5.01 0.00 39.13 2.71
2586 2970 4.639755 TGTGTGAATACATAGGCCACAATG 59.360 41.667 5.01 8.43 39.13 2.82
2587 2971 4.640201 GTGTGAATACATAGGCCACAATGT 59.360 41.667 18.72 18.72 39.13 2.71
2588 2972 4.639755 TGTGAATACATAGGCCACAATGTG 59.360 41.667 21.96 6.37 36.96 3.21
2589 2973 4.640201 GTGAATACATAGGCCACAATGTGT 59.360 41.667 21.96 15.57 36.96 3.72
2590 2974 4.881273 TGAATACATAGGCCACAATGTGTC 59.119 41.667 21.96 18.82 36.96 3.67
2591 2975 2.128771 ACATAGGCCACAATGTGTCC 57.871 50.000 12.79 9.20 35.06 4.02
2592 2976 1.340991 ACATAGGCCACAATGTGTCCC 60.341 52.381 10.10 10.62 31.20 4.46
2593 2977 1.064463 CATAGGCCACAATGTGTCCCT 60.064 52.381 21.08 21.08 31.20 4.20
2594 2978 1.959710 TAGGCCACAATGTGTCCCTA 58.040 50.000 19.50 19.50 31.20 3.53
2595 2979 0.620556 AGGCCACAATGTGTCCCTAG 59.379 55.000 17.54 1.61 31.20 3.02
2596 2980 0.328258 GGCCACAATGTGTCCCTAGT 59.672 55.000 12.79 0.00 0.00 2.57
2597 2981 1.453155 GCCACAATGTGTCCCTAGTG 58.547 55.000 12.79 0.00 0.00 2.74
2598 2982 1.271379 GCCACAATGTGTCCCTAGTGT 60.271 52.381 12.79 0.00 0.00 3.55
2599 2983 2.426522 CCACAATGTGTCCCTAGTGTG 58.573 52.381 12.79 0.00 36.87 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 5.184864 ACATTGATGGAAGGCGTGATAAAAA 59.815 36.000 0.00 0.00 0.00 1.94
17 18 4.704540 ACATTGATGGAAGGCGTGATAAAA 59.295 37.500 0.00 0.00 0.00 1.52
18 19 4.096231 CACATTGATGGAAGGCGTGATAAA 59.904 41.667 0.00 0.00 0.00 1.40
19 20 3.627123 CACATTGATGGAAGGCGTGATAA 59.373 43.478 0.00 0.00 0.00 1.75
20 21 3.118445 TCACATTGATGGAAGGCGTGATA 60.118 43.478 0.00 0.00 0.00 2.15
21 22 2.019249 CACATTGATGGAAGGCGTGAT 58.981 47.619 0.00 0.00 0.00 3.06
22 23 1.003003 TCACATTGATGGAAGGCGTGA 59.997 47.619 0.00 0.00 0.00 4.35
23 24 1.452110 TCACATTGATGGAAGGCGTG 58.548 50.000 0.00 0.00 0.00 5.34
24 25 2.425143 ATCACATTGATGGAAGGCGT 57.575 45.000 0.00 0.00 35.43 5.68
25 26 3.129113 TGAAATCACATTGATGGAAGGCG 59.871 43.478 0.00 0.00 37.15 5.52
26 27 4.724074 TGAAATCACATTGATGGAAGGC 57.276 40.909 0.00 0.00 37.15 4.35
27 28 6.270815 GTCATGAAATCACATTGATGGAAGG 58.729 40.000 0.00 0.00 37.15 3.46
28 29 5.969435 CGTCATGAAATCACATTGATGGAAG 59.031 40.000 0.00 0.00 37.15 3.46
29 30 5.647225 TCGTCATGAAATCACATTGATGGAA 59.353 36.000 0.00 0.00 37.15 3.53
30 31 5.184711 TCGTCATGAAATCACATTGATGGA 58.815 37.500 0.00 0.00 37.15 3.41
31 32 5.488645 TCGTCATGAAATCACATTGATGG 57.511 39.130 0.00 0.00 37.15 3.51
32 33 7.539710 AGTTTTCGTCATGAAATCACATTGATG 59.460 33.333 0.00 0.37 45.62 3.07
33 34 7.596494 AGTTTTCGTCATGAAATCACATTGAT 58.404 30.769 0.00 0.00 45.62 2.57
34 35 6.969366 AGTTTTCGTCATGAAATCACATTGA 58.031 32.000 0.00 0.00 45.62 2.57
35 36 7.627585 AAGTTTTCGTCATGAAATCACATTG 57.372 32.000 0.00 0.00 45.62 2.82
36 37 8.349245 TGTAAGTTTTCGTCATGAAATCACATT 58.651 29.630 0.00 0.00 45.62 2.71
37 38 7.870826 TGTAAGTTTTCGTCATGAAATCACAT 58.129 30.769 0.00 0.00 45.62 3.21
38 39 7.252965 TGTAAGTTTTCGTCATGAAATCACA 57.747 32.000 0.00 0.00 45.62 3.58
39 40 7.201266 GCATGTAAGTTTTCGTCATGAAATCAC 60.201 37.037 0.00 0.00 45.62 3.06
40 41 6.801377 GCATGTAAGTTTTCGTCATGAAATCA 59.199 34.615 0.00 0.00 45.62 2.57
41 42 6.801377 TGCATGTAAGTTTTCGTCATGAAATC 59.199 34.615 0.00 0.00 45.62 2.17
42 43 6.676950 TGCATGTAAGTTTTCGTCATGAAAT 58.323 32.000 0.00 0.00 45.62 2.17
43 44 6.066054 TGCATGTAAGTTTTCGTCATGAAA 57.934 33.333 0.00 0.00 44.70 2.69
44 45 5.681337 TGCATGTAAGTTTTCGTCATGAA 57.319 34.783 0.00 0.00 38.35 2.57
45 46 5.681337 TTGCATGTAAGTTTTCGTCATGA 57.319 34.783 7.49 0.00 38.35 3.07
46 47 6.581919 TGAATTGCATGTAAGTTTTCGTCATG 59.418 34.615 1.90 0.00 38.87 3.07
47 48 6.676950 TGAATTGCATGTAAGTTTTCGTCAT 58.323 32.000 1.90 0.00 0.00 3.06
48 49 6.066054 TGAATTGCATGTAAGTTTTCGTCA 57.934 33.333 1.90 0.00 0.00 4.35
49 50 6.984740 TTGAATTGCATGTAAGTTTTCGTC 57.015 33.333 1.90 0.00 0.00 4.20
50 51 6.754209 TGTTTGAATTGCATGTAAGTTTTCGT 59.246 30.769 1.90 0.00 0.00 3.85
51 52 7.159437 TGTTTGAATTGCATGTAAGTTTTCG 57.841 32.000 1.90 0.00 0.00 3.46
52 53 9.934190 AAATGTTTGAATTGCATGTAAGTTTTC 57.066 25.926 1.90 2.24 0.00 2.29
53 54 9.934190 GAAATGTTTGAATTGCATGTAAGTTTT 57.066 25.926 1.90 0.00 0.00 2.43
54 55 9.328845 AGAAATGTTTGAATTGCATGTAAGTTT 57.671 25.926 1.90 0.00 0.00 2.66
55 56 8.891671 AGAAATGTTTGAATTGCATGTAAGTT 57.108 26.923 1.90 0.00 0.00 2.66
56 57 8.891671 AAGAAATGTTTGAATTGCATGTAAGT 57.108 26.923 1.90 0.00 0.00 2.24
60 61 9.328845 ACTTTAAGAAATGTTTGAATTGCATGT 57.671 25.926 0.00 0.00 0.00 3.21
71 72 6.876257 TGTGTGGCAAACTTTAAGAAATGTTT 59.124 30.769 9.62 0.00 41.23 2.83
72 73 6.402222 TGTGTGGCAAACTTTAAGAAATGTT 58.598 32.000 9.62 0.00 35.20 2.71
73 74 5.971763 TGTGTGGCAAACTTTAAGAAATGT 58.028 33.333 9.62 0.00 0.00 2.71
74 75 6.900568 TTGTGTGGCAAACTTTAAGAAATG 57.099 33.333 9.62 0.00 33.53 2.32
75 76 7.913674 TTTTGTGTGGCAAACTTTAAGAAAT 57.086 28.000 9.62 0.00 45.70 2.17
76 77 7.913674 ATTTTGTGTGGCAAACTTTAAGAAA 57.086 28.000 9.62 0.00 45.70 2.52
77 78 7.913674 AATTTTGTGTGGCAAACTTTAAGAA 57.086 28.000 9.62 0.00 45.70 2.52
78 79 7.604164 TGAAATTTTGTGTGGCAAACTTTAAGA 59.396 29.630 9.62 0.00 44.48 2.10
79 80 7.746929 TGAAATTTTGTGTGGCAAACTTTAAG 58.253 30.769 9.62 0.00 44.48 1.85
80 81 7.672983 TGAAATTTTGTGTGGCAAACTTTAA 57.327 28.000 9.62 1.16 44.48 1.52
81 82 7.856145 ATGAAATTTTGTGTGGCAAACTTTA 57.144 28.000 9.62 0.00 44.48 1.85
82 83 6.756299 ATGAAATTTTGTGTGGCAAACTTT 57.244 29.167 9.62 0.80 45.97 2.66
83 84 7.856145 TTATGAAATTTTGTGTGGCAAACTT 57.144 28.000 9.62 0.00 45.70 2.66
84 85 8.449251 AATTATGAAATTTTGTGTGGCAAACT 57.551 26.923 9.62 0.00 45.70 2.66
128 129 5.508825 CCTGGATGAACGGTGAATTCAAAAA 60.509 40.000 10.35 0.00 39.43 1.94
129 130 4.022416 CCTGGATGAACGGTGAATTCAAAA 60.022 41.667 10.35 0.00 39.43 2.44
130 131 3.505680 CCTGGATGAACGGTGAATTCAAA 59.494 43.478 10.35 0.00 39.43 2.69
131 132 3.081061 CCTGGATGAACGGTGAATTCAA 58.919 45.455 10.35 0.00 39.43 2.69
132 133 2.304470 TCCTGGATGAACGGTGAATTCA 59.696 45.455 3.38 3.38 40.25 2.57
133 134 2.939103 CTCCTGGATGAACGGTGAATTC 59.061 50.000 0.00 0.00 0.00 2.17
134 135 2.941415 GCTCCTGGATGAACGGTGAATT 60.941 50.000 0.00 0.00 0.00 2.17
135 136 1.407437 GCTCCTGGATGAACGGTGAAT 60.407 52.381 0.00 0.00 0.00 2.57
136 137 0.036388 GCTCCTGGATGAACGGTGAA 60.036 55.000 0.00 0.00 0.00 3.18
137 138 1.191489 TGCTCCTGGATGAACGGTGA 61.191 55.000 0.00 0.00 0.00 4.02
138 139 0.107508 ATGCTCCTGGATGAACGGTG 60.108 55.000 0.00 0.00 0.00 4.94
139 140 0.620556 AATGCTCCTGGATGAACGGT 59.379 50.000 0.00 0.00 0.00 4.83
140 141 2.487934 CTAATGCTCCTGGATGAACGG 58.512 52.381 0.00 0.00 0.00 4.44
141 142 1.869767 GCTAATGCTCCTGGATGAACG 59.130 52.381 0.00 0.00 36.03 3.95
154 155 5.404066 GGAGTTTCTAATCTCGAGCTAATGC 59.596 44.000 7.81 0.00 40.05 3.56
155 156 6.419413 GTGGAGTTTCTAATCTCGAGCTAATG 59.581 42.308 7.81 0.00 0.00 1.90
156 157 6.508777 GTGGAGTTTCTAATCTCGAGCTAAT 58.491 40.000 7.81 0.00 0.00 1.73
157 158 5.448768 CGTGGAGTTTCTAATCTCGAGCTAA 60.449 44.000 7.81 0.00 0.00 3.09
158 159 4.035324 CGTGGAGTTTCTAATCTCGAGCTA 59.965 45.833 7.81 0.57 0.00 3.32
159 160 3.181495 CGTGGAGTTTCTAATCTCGAGCT 60.181 47.826 7.81 0.00 0.00 4.09
160 161 3.109619 CGTGGAGTTTCTAATCTCGAGC 58.890 50.000 7.81 0.00 0.00 5.03
161 162 3.109619 GCGTGGAGTTTCTAATCTCGAG 58.890 50.000 5.93 5.93 0.00 4.04
162 163 2.159282 GGCGTGGAGTTTCTAATCTCGA 60.159 50.000 0.00 0.00 0.00 4.04
163 164 2.194271 GGCGTGGAGTTTCTAATCTCG 58.806 52.381 0.00 0.00 0.00 4.04
164 165 2.093658 TGGGCGTGGAGTTTCTAATCTC 60.094 50.000 0.00 0.00 0.00 2.75
165 166 1.906574 TGGGCGTGGAGTTTCTAATCT 59.093 47.619 0.00 0.00 0.00 2.40
166 167 2.280628 CTGGGCGTGGAGTTTCTAATC 58.719 52.381 0.00 0.00 0.00 1.75
167 168 1.065418 CCTGGGCGTGGAGTTTCTAAT 60.065 52.381 0.00 0.00 0.00 1.73
168 169 0.323629 CCTGGGCGTGGAGTTTCTAA 59.676 55.000 0.00 0.00 0.00 2.10
169 170 0.543410 TCCTGGGCGTGGAGTTTCTA 60.543 55.000 0.00 0.00 0.00 2.10
170 171 1.415672 TTCCTGGGCGTGGAGTTTCT 61.416 55.000 0.00 0.00 34.76 2.52
171 172 0.955919 CTTCCTGGGCGTGGAGTTTC 60.956 60.000 0.00 0.00 34.76 2.78
172 173 1.073199 CTTCCTGGGCGTGGAGTTT 59.927 57.895 0.00 0.00 34.76 2.66
173 174 1.415672 TTCTTCCTGGGCGTGGAGTT 61.416 55.000 0.00 0.00 34.76 3.01
174 175 1.831652 CTTCTTCCTGGGCGTGGAGT 61.832 60.000 0.00 0.00 34.76 3.85
175 176 1.078848 CTTCTTCCTGGGCGTGGAG 60.079 63.158 0.00 0.00 34.76 3.86
176 177 2.592993 CCTTCTTCCTGGGCGTGGA 61.593 63.158 0.00 0.00 0.00 4.02
177 178 2.045926 CCTTCTTCCTGGGCGTGG 60.046 66.667 0.00 0.00 0.00 4.94
178 179 2.747855 GCCTTCTTCCTGGGCGTG 60.748 66.667 0.00 0.00 36.37 5.34
179 180 4.035102 GGCCTTCTTCCTGGGCGT 62.035 66.667 0.00 0.00 46.10 5.68
181 182 2.446982 AAAGGGCCTTCTTCCTGGGC 62.447 60.000 21.20 0.00 46.59 5.36
182 183 0.115152 AAAAGGGCCTTCTTCCTGGG 59.885 55.000 21.20 0.00 32.95 4.45
183 184 1.076187 AGAAAAGGGCCTTCTTCCTGG 59.924 52.381 21.20 0.00 32.95 4.45
184 185 2.165998 CAGAAAAGGGCCTTCTTCCTG 58.834 52.381 21.20 18.45 30.58 3.86
185 186 1.076187 CCAGAAAAGGGCCTTCTTCCT 59.924 52.381 21.20 11.15 30.58 3.36
186 187 1.550327 CCAGAAAAGGGCCTTCTTCC 58.450 55.000 21.20 8.99 30.58 3.46
187 188 0.891373 GCCAGAAAAGGGCCTTCTTC 59.109 55.000 21.20 22.21 45.87 2.87
188 189 3.057749 GCCAGAAAAGGGCCTTCTT 57.942 52.632 21.20 15.51 45.87 2.52
189 190 4.852388 GCCAGAAAAGGGCCTTCT 57.148 55.556 21.20 10.97 45.87 2.85
195 196 1.273327 GGTTGTCATGCCAGAAAAGGG 59.727 52.381 0.00 0.00 0.00 3.95
196 197 1.068333 CGGTTGTCATGCCAGAAAAGG 60.068 52.381 0.00 0.00 0.00 3.11
197 198 1.068333 CCGGTTGTCATGCCAGAAAAG 60.068 52.381 0.00 0.00 0.00 2.27
198 199 0.958091 CCGGTTGTCATGCCAGAAAA 59.042 50.000 0.00 0.00 0.00 2.29
199 200 0.179004 ACCGGTTGTCATGCCAGAAA 60.179 50.000 0.00 0.00 0.00 2.52
200 201 0.605319 GACCGGTTGTCATGCCAGAA 60.605 55.000 9.42 0.00 43.85 3.02
201 202 1.003839 GACCGGTTGTCATGCCAGA 60.004 57.895 9.42 0.00 43.85 3.86
202 203 3.578456 GACCGGTTGTCATGCCAG 58.422 61.111 9.42 0.00 43.85 4.85
209 210 0.818040 ACCAAAGCTGACCGGTTGTC 60.818 55.000 9.42 0.00 44.72 3.18
210 211 1.101049 CACCAAAGCTGACCGGTTGT 61.101 55.000 9.42 0.00 32.77 3.32
211 212 0.817634 TCACCAAAGCTGACCGGTTG 60.818 55.000 9.42 6.34 32.77 3.77
212 213 0.818040 GTCACCAAAGCTGACCGGTT 60.818 55.000 9.42 0.00 33.23 4.44
213 214 1.227853 GTCACCAAAGCTGACCGGT 60.228 57.895 6.92 6.92 33.23 5.28
219 220 1.522668 TCAATCGGTCACCAAAGCTG 58.477 50.000 0.00 0.00 0.00 4.24
220 221 2.359900 GATCAATCGGTCACCAAAGCT 58.640 47.619 0.00 0.00 0.00 3.74
230 231 5.439721 TCAAATTGAGATGGATCAATCGGT 58.560 37.500 4.37 0.00 46.64 4.69
236 237 3.817084 GCCGATCAAATTGAGATGGATCA 59.183 43.478 13.02 0.00 35.29 2.92
247 248 3.502211 AGAACACGAAAGCCGATCAAATT 59.498 39.130 0.00 0.00 41.76 1.82
251 252 2.163818 AAGAACACGAAAGCCGATCA 57.836 45.000 0.00 0.00 41.76 2.92
253 254 1.535462 CCAAAGAACACGAAAGCCGAT 59.465 47.619 0.00 0.00 41.76 4.18
257 258 5.358298 AATACTCCAAAGAACACGAAAGC 57.642 39.130 0.00 0.00 0.00 3.51
258 259 7.857569 TGTAAATACTCCAAAGAACACGAAAG 58.142 34.615 0.00 0.00 0.00 2.62
262 263 6.021596 GCATGTAAATACTCCAAAGAACACG 58.978 40.000 0.00 0.00 0.00 4.49
281 282 0.326264 AAGAGGCCGAAAGAGCATGT 59.674 50.000 0.00 0.00 0.00 3.21
282 283 1.012841 GAAGAGGCCGAAAGAGCATG 58.987 55.000 0.00 0.00 0.00 4.06
284 285 0.687354 AAGAAGAGGCCGAAAGAGCA 59.313 50.000 0.00 0.00 0.00 4.26
292 293 0.739112 GTCTGCAGAAGAAGAGGCCG 60.739 60.000 20.19 0.00 36.40 6.13
308 309 3.179265 CGTCGCAAATCGCCGTCT 61.179 61.111 0.00 0.00 34.60 4.18
315 316 1.129326 CGGGATCTACGTCGCAAATC 58.871 55.000 0.00 0.00 0.00 2.17
322 323 0.662085 GTCTGTCCGGGATCTACGTC 59.338 60.000 0.00 0.00 0.00 4.34
324 325 1.094073 ACGTCTGTCCGGGATCTACG 61.094 60.000 19.73 19.73 35.17 3.51
338 339 5.100344 TCTATGTAGGTCAGAAGACGTCT 57.900 43.478 13.58 13.58 45.92 4.18
339 340 5.278071 CCATCTATGTAGGTCAGAAGACGTC 60.278 48.000 7.70 7.70 45.92 4.34
347 348 4.944619 TGAAGCCATCTATGTAGGTCAG 57.055 45.455 0.00 0.00 0.00 3.51
368 369 1.614317 GCTTGTAGAAGTGGTGGCCAT 60.614 52.381 9.72 0.00 35.28 4.40
369 370 0.250727 GCTTGTAGAAGTGGTGGCCA 60.251 55.000 0.00 0.00 0.00 5.36
394 395 5.573669 TCAACGAAGCAAACTTGTTTAAACC 59.426 36.000 15.59 0.00 35.82 3.27
395 396 6.237463 CCTCAACGAAGCAAACTTGTTTAAAC 60.237 38.462 11.54 11.54 35.82 2.01
409 410 2.815647 CCTCCGCCTCAACGAAGC 60.816 66.667 0.00 0.00 34.06 3.86
467 468 0.462759 CTTCTTCCTCCGGCATCCAC 60.463 60.000 0.00 0.00 0.00 4.02
468 469 0.617535 TCTTCTTCCTCCGGCATCCA 60.618 55.000 0.00 0.00 0.00 3.41
470 471 0.827368 AGTCTTCTTCCTCCGGCATC 59.173 55.000 0.00 0.00 0.00 3.91
471 472 1.280457 AAGTCTTCTTCCTCCGGCAT 58.720 50.000 0.00 0.00 0.00 4.40
472 473 1.056660 AAAGTCTTCTTCCTCCGGCA 58.943 50.000 0.00 0.00 32.90 5.69
473 474 2.894902 CTAAAGTCTTCTTCCTCCGGC 58.105 52.381 0.00 0.00 32.90 6.13
474 475 2.233922 TGCTAAAGTCTTCTTCCTCCGG 59.766 50.000 0.00 0.00 32.90 5.14
475 476 3.254892 GTGCTAAAGTCTTCTTCCTCCG 58.745 50.000 0.00 0.00 32.90 4.63
485 486 9.077885 TCAAAATTCTTAATGGTGCTAAAGTCT 57.922 29.630 0.00 0.00 0.00 3.24
519 521 5.986501 ACAAACACACCCTTACAGAAAAA 57.013 34.783 0.00 0.00 0.00 1.94
525 527 6.237887 AGTACTTACAAACACACCCTTACA 57.762 37.500 0.00 0.00 0.00 2.41
616 621 9.533831 AAATGTGGGAATTAGATGTTTCTTACT 57.466 29.630 0.00 0.00 33.17 2.24
623 628 8.336235 TCTTAGGAAATGTGGGAATTAGATGTT 58.664 33.333 0.00 0.00 0.00 2.71
633 638 3.396276 TGGTGTTCTTAGGAAATGTGGGA 59.604 43.478 0.00 0.00 32.81 4.37
634 639 3.758554 CTGGTGTTCTTAGGAAATGTGGG 59.241 47.826 0.00 0.00 32.81 4.61
647 652 4.682860 CGTACGTATTTGTTCTGGTGTTCT 59.317 41.667 7.22 0.00 0.00 3.01
664 669 9.666626 TTTGACATCATTTAATTTTTCGTACGT 57.333 25.926 16.05 0.00 0.00 3.57
669 674 9.305110 GTGCTTTTGACATCATTTAATTTTTCG 57.695 29.630 0.00 0.00 0.00 3.46
701 706 5.728637 TCTAGGTATGGTCATATGCACAG 57.271 43.478 0.00 0.00 0.00 3.66
703 708 7.122799 TCACTATCTAGGTATGGTCATATGCAC 59.877 40.741 0.00 0.00 0.00 4.57
787 798 7.229707 AGGTAACATCTGTAGCAGTATCTGTAG 59.770 40.741 0.00 0.00 41.41 2.74
788 799 7.061054 AGGTAACATCTGTAGCAGTATCTGTA 58.939 38.462 0.00 0.00 41.41 2.74
789 800 5.894393 AGGTAACATCTGTAGCAGTATCTGT 59.106 40.000 0.00 0.00 41.41 3.41
790 801 6.398234 AGGTAACATCTGTAGCAGTATCTG 57.602 41.667 0.00 0.00 41.41 2.90
791 802 6.607600 TGAAGGTAACATCTGTAGCAGTATCT 59.392 38.462 0.00 0.00 41.41 1.98
792 803 6.697892 GTGAAGGTAACATCTGTAGCAGTATC 59.302 42.308 0.00 0.00 41.41 2.24
793 804 6.154534 TGTGAAGGTAACATCTGTAGCAGTAT 59.845 38.462 0.00 0.00 41.41 2.12
794 805 5.479027 TGTGAAGGTAACATCTGTAGCAGTA 59.521 40.000 0.00 0.00 41.41 2.74
795 806 4.283467 TGTGAAGGTAACATCTGTAGCAGT 59.717 41.667 0.00 0.00 41.41 4.40
796 807 4.820897 TGTGAAGGTAACATCTGTAGCAG 58.179 43.478 0.00 0.00 41.41 4.24
797 808 4.882842 TGTGAAGGTAACATCTGTAGCA 57.117 40.909 0.00 0.00 41.41 3.49
798 809 9.712305 ATTATATGTGAAGGTAACATCTGTAGC 57.288 33.333 0.00 0.00 39.05 3.58
821 832 0.311165 GTAGAGCAGCGAGGCGATTA 59.689 55.000 0.00 0.00 39.27 1.75
822 833 1.066587 GTAGAGCAGCGAGGCGATT 59.933 57.895 0.00 0.00 39.27 3.34
827 838 2.105930 GGCAGTAGAGCAGCGAGG 59.894 66.667 0.00 0.00 35.83 4.63
851 862 6.914757 GCGAACATAAGACCCCGTATATATAC 59.085 42.308 12.18 12.18 0.00 1.47
869 880 1.666011 ACGAGAGTGTGGCGAACAT 59.334 52.632 0.00 0.00 46.97 2.71
1104 1116 2.680352 GAGGTGGAGACGAGGCCA 60.680 66.667 5.01 0.00 0.00 5.36
1553 1565 2.031870 TCATGAGACCATAGGTGACCG 58.968 52.381 0.00 0.00 35.25 4.79
1563 1575 2.549992 CCGGAACAGTTTCATGAGACCA 60.550 50.000 12.50 0.00 32.80 4.02
1682 1701 0.981943 ACCTACTGTTTTCCCCCTCG 59.018 55.000 0.00 0.00 0.00 4.63
1688 1707 3.826729 AGGCAATTCACCTACTGTTTTCC 59.173 43.478 0.00 0.00 35.10 3.13
1689 1708 4.798574 CAGGCAATTCACCTACTGTTTTC 58.201 43.478 0.00 0.00 35.10 2.29
1716 1735 4.095483 CACCACAAGCTAGGATTTGCTAAG 59.905 45.833 6.77 0.00 38.75 2.18
1809 1832 0.168788 CACGTGGCAGCTTTACATGG 59.831 55.000 7.95 0.00 0.00 3.66
1908 2286 9.991906 TTATATTTCTTTACGGAGGGAGTATTG 57.008 33.333 0.00 0.00 0.00 1.90
1912 2290 9.916360 ATTTTTATATTTCTTTACGGAGGGAGT 57.084 29.630 0.00 0.00 0.00 3.85
1914 2292 9.689501 ACATTTTTATATTTCTTTACGGAGGGA 57.310 29.630 0.00 0.00 0.00 4.20
1965 2343 9.627123 CAATTACTCCCTCCATAAAGAAATGTA 57.373 33.333 0.00 0.00 0.00 2.29
1966 2344 8.116026 ACAATTACTCCCTCCATAAAGAAATGT 58.884 33.333 0.00 0.00 0.00 2.71
1967 2345 8.525290 ACAATTACTCCCTCCATAAAGAAATG 57.475 34.615 0.00 0.00 0.00 2.32
2308 2691 6.135290 TGAAACACTCAAATGACTCCTTTG 57.865 37.500 1.42 1.42 35.41 2.77
2311 2694 4.141390 ACCTGAAACACTCAAATGACTCCT 60.141 41.667 0.00 0.00 32.17 3.69
2317 2700 3.044986 CGCAACCTGAAACACTCAAATG 58.955 45.455 0.00 0.00 32.17 2.32
2329 2712 5.697473 TCATTTACATTTTCGCAACCTGA 57.303 34.783 0.00 0.00 0.00 3.86
2343 2726 8.682710 GTTGGGTAATTCTTGCTATCATTTACA 58.317 33.333 0.00 0.00 0.00 2.41
2349 2732 5.815581 ACTGTTGGGTAATTCTTGCTATCA 58.184 37.500 0.00 0.00 0.00 2.15
2367 2750 6.320164 TCAATACTTGTTACTTGGCAACTGTT 59.680 34.615 0.00 0.00 37.61 3.16
2401 2785 2.280628 GCCACGCTTCTAAATACTGCT 58.719 47.619 0.00 0.00 0.00 4.24
2404 2788 3.118408 TCCATGCCACGCTTCTAAATACT 60.118 43.478 0.00 0.00 0.00 2.12
2405 2789 3.202906 TCCATGCCACGCTTCTAAATAC 58.797 45.455 0.00 0.00 0.00 1.89
2406 2790 3.552132 TCCATGCCACGCTTCTAAATA 57.448 42.857 0.00 0.00 0.00 1.40
2407 2791 2.418368 TCCATGCCACGCTTCTAAAT 57.582 45.000 0.00 0.00 0.00 1.40
2408 2792 2.192664 TTCCATGCCACGCTTCTAAA 57.807 45.000 0.00 0.00 0.00 1.85
2409 2793 2.192664 TTTCCATGCCACGCTTCTAA 57.807 45.000 0.00 0.00 0.00 2.10
2410 2794 2.016318 CATTTCCATGCCACGCTTCTA 58.984 47.619 0.00 0.00 0.00 2.10
2411 2795 0.813184 CATTTCCATGCCACGCTTCT 59.187 50.000 0.00 0.00 0.00 2.85
2412 2796 0.179129 CCATTTCCATGCCACGCTTC 60.179 55.000 0.00 0.00 0.00 3.86
2413 2797 0.611618 TCCATTTCCATGCCACGCTT 60.612 50.000 0.00 0.00 0.00 4.68
2414 2798 0.396139 ATCCATTTCCATGCCACGCT 60.396 50.000 0.00 0.00 0.00 5.07
2415 2799 1.317613 TATCCATTTCCATGCCACGC 58.682 50.000 0.00 0.00 0.00 5.34
2416 2800 3.305539 CCAATATCCATTTCCATGCCACG 60.306 47.826 0.00 0.00 0.00 4.94
2417 2801 3.896888 TCCAATATCCATTTCCATGCCAC 59.103 43.478 0.00 0.00 0.00 5.01
2418 2802 4.196118 TCCAATATCCATTTCCATGCCA 57.804 40.909 0.00 0.00 0.00 4.92
2419 2803 4.559300 CGTTCCAATATCCATTTCCATGCC 60.559 45.833 0.00 0.00 0.00 4.40
2420 2804 4.037923 ACGTTCCAATATCCATTTCCATGC 59.962 41.667 0.00 0.00 0.00 4.06
2421 2805 5.772825 ACGTTCCAATATCCATTTCCATG 57.227 39.130 0.00 0.00 0.00 3.66
2422 2806 5.451798 GCAACGTTCCAATATCCATTTCCAT 60.452 40.000 0.00 0.00 0.00 3.41
2423 2807 4.142271 GCAACGTTCCAATATCCATTTCCA 60.142 41.667 0.00 0.00 0.00 3.53
2424 2808 4.142271 TGCAACGTTCCAATATCCATTTCC 60.142 41.667 0.00 0.00 0.00 3.13
2425 2809 4.992688 TGCAACGTTCCAATATCCATTTC 58.007 39.130 0.00 0.00 0.00 2.17
2426 2810 5.105392 ACATGCAACGTTCCAATATCCATTT 60.105 36.000 0.00 0.00 0.00 2.32
2427 2811 4.402155 ACATGCAACGTTCCAATATCCATT 59.598 37.500 0.00 0.00 0.00 3.16
2428 2812 3.953612 ACATGCAACGTTCCAATATCCAT 59.046 39.130 0.00 0.00 0.00 3.41
2429 2813 3.351740 ACATGCAACGTTCCAATATCCA 58.648 40.909 0.00 0.00 0.00 3.41
2430 2814 5.689383 ATACATGCAACGTTCCAATATCC 57.311 39.130 0.00 0.00 0.00 2.59
2431 2815 6.494842 ACAATACATGCAACGTTCCAATATC 58.505 36.000 0.00 0.00 0.00 1.63
2432 2816 6.449635 ACAATACATGCAACGTTCCAATAT 57.550 33.333 0.00 0.00 0.00 1.28
2433 2817 5.888691 ACAATACATGCAACGTTCCAATA 57.111 34.783 0.00 0.00 0.00 1.90
2434 2818 4.782019 ACAATACATGCAACGTTCCAAT 57.218 36.364 0.00 0.00 0.00 3.16
2435 2819 4.294232 CAACAATACATGCAACGTTCCAA 58.706 39.130 0.00 0.00 0.00 3.53
2436 2820 3.304996 CCAACAATACATGCAACGTTCCA 60.305 43.478 0.00 0.00 0.00 3.53
2437 2821 3.057876 TCCAACAATACATGCAACGTTCC 60.058 43.478 0.00 0.00 0.00 3.62
2438 2822 4.153958 TCCAACAATACATGCAACGTTC 57.846 40.909 0.00 0.00 0.00 3.95
2439 2823 4.576216 TTCCAACAATACATGCAACGTT 57.424 36.364 0.00 0.00 0.00 3.99
2440 2824 4.576216 TTTCCAACAATACATGCAACGT 57.424 36.364 0.00 0.00 0.00 3.99
2441 2825 6.291743 GCATATTTCCAACAATACATGCAACG 60.292 38.462 0.00 0.00 30.11 4.10
2442 2826 6.018832 GGCATATTTCCAACAATACATGCAAC 60.019 38.462 0.00 0.00 30.80 4.17
2443 2827 6.047870 GGCATATTTCCAACAATACATGCAA 58.952 36.000 0.00 0.00 30.80 4.08
2444 2828 5.453057 GGGCATATTTCCAACAATACATGCA 60.453 40.000 0.00 0.00 30.80 3.96
2445 2829 4.990426 GGGCATATTTCCAACAATACATGC 59.010 41.667 0.00 0.00 29.37 4.06
2446 2830 6.409524 AGGGCATATTTCCAACAATACATG 57.590 37.500 0.00 0.00 0.00 3.21
2447 2831 7.526041 TCTAGGGCATATTTCCAACAATACAT 58.474 34.615 0.00 0.00 0.00 2.29
2448 2832 6.905736 TCTAGGGCATATTTCCAACAATACA 58.094 36.000 0.00 0.00 0.00 2.29
2449 2833 6.431234 CCTCTAGGGCATATTTCCAACAATAC 59.569 42.308 0.00 0.00 0.00 1.89
2450 2834 6.542821 CCTCTAGGGCATATTTCCAACAATA 58.457 40.000 0.00 0.00 0.00 1.90
2451 2835 5.388654 CCTCTAGGGCATATTTCCAACAAT 58.611 41.667 0.00 0.00 0.00 2.71
2452 2836 4.792068 CCTCTAGGGCATATTTCCAACAA 58.208 43.478 0.00 0.00 0.00 2.83
2453 2837 4.437682 CCTCTAGGGCATATTTCCAACA 57.562 45.455 0.00 0.00 0.00 3.33
2541 2925 9.268268 ACACATGTATTACGATTTCCGAATAAT 57.732 29.630 0.00 0.00 41.76 1.28
2542 2926 8.544597 CACACATGTATTACGATTTCCGAATAA 58.455 33.333 0.00 0.00 41.76 1.40
2543 2927 7.921745 TCACACATGTATTACGATTTCCGAATA 59.078 33.333 0.00 0.00 41.76 1.75
2544 2928 6.759356 TCACACATGTATTACGATTTCCGAAT 59.241 34.615 0.00 0.00 41.76 3.34
2545 2929 6.100668 TCACACATGTATTACGATTTCCGAA 58.899 36.000 0.00 0.00 41.76 4.30
2546 2930 5.652518 TCACACATGTATTACGATTTCCGA 58.347 37.500 0.00 0.00 41.76 4.55
2547 2931 5.959652 TCACACATGTATTACGATTTCCG 57.040 39.130 0.00 0.00 45.44 4.30
2548 2932 8.822855 TGTATTCACACATGTATTACGATTTCC 58.177 33.333 0.00 0.00 0.00 3.13
2552 2936 9.639601 CCTATGTATTCACACATGTATTACGAT 57.360 33.333 0.00 0.00 39.46 3.73
2553 2937 7.597369 GCCTATGTATTCACACATGTATTACGA 59.403 37.037 0.00 0.00 39.46 3.43
2554 2938 7.148639 GGCCTATGTATTCACACATGTATTACG 60.149 40.741 0.00 0.00 39.46 3.18
2555 2939 7.659799 TGGCCTATGTATTCACACATGTATTAC 59.340 37.037 3.32 0.00 39.46 1.89
2556 2940 7.659799 GTGGCCTATGTATTCACACATGTATTA 59.340 37.037 3.32 0.00 39.46 0.98
2557 2941 6.486657 GTGGCCTATGTATTCACACATGTATT 59.513 38.462 3.32 0.00 39.46 1.89
2558 2942 5.997746 GTGGCCTATGTATTCACACATGTAT 59.002 40.000 3.32 0.00 39.46 2.29
2559 2943 5.104735 TGTGGCCTATGTATTCACACATGTA 60.105 40.000 3.32 0.00 39.46 2.29
2560 2944 4.199310 GTGGCCTATGTATTCACACATGT 58.801 43.478 3.32 0.00 39.46 3.21
2561 2945 4.198530 TGTGGCCTATGTATTCACACATG 58.801 43.478 3.32 0.00 39.46 3.21
2562 2946 4.502105 TGTGGCCTATGTATTCACACAT 57.498 40.909 3.32 0.00 41.88 3.21
2563 2947 3.990959 TGTGGCCTATGTATTCACACA 57.009 42.857 3.32 0.00 37.54 3.72
2564 2948 4.640201 ACATTGTGGCCTATGTATTCACAC 59.360 41.667 14.45 0.00 37.96 3.82
2565 2949 4.639755 CACATTGTGGCCTATGTATTCACA 59.360 41.667 15.28 1.11 35.30 3.58
2566 2950 4.640201 ACACATTGTGGCCTATGTATTCAC 59.360 41.667 20.33 0.00 35.30 3.18
2567 2951 4.854173 ACACATTGTGGCCTATGTATTCA 58.146 39.130 20.33 0.00 35.30 2.57
2568 2952 5.424121 GACACATTGTGGCCTATGTATTC 57.576 43.478 20.33 11.93 35.14 1.75
2578 2962 1.271379 ACACTAGGGACACATTGTGGC 60.271 52.381 20.33 17.67 41.56 5.01
2579 2963 2.426522 CACACTAGGGACACATTGTGG 58.573 52.381 20.33 4.56 37.94 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.