Multiple sequence alignment - TraesCS4A01G209300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G209300 chr4A 100.000 2819 0 0 1 2819 502902207 502899389 0.000000e+00 5206.0
1 TraesCS4A01G209300 chr4D 95.841 1154 39 6 1 1151 90989518 90988371 0.000000e+00 1857.0
2 TraesCS4A01G209300 chr6D 89.899 891 62 9 1297 2186 168287419 168288282 0.000000e+00 1122.0
3 TraesCS4A01G209300 chr6D 95.320 641 25 3 2182 2818 168290296 168290935 0.000000e+00 1013.0
4 TraesCS4A01G209300 chr5A 88.914 893 79 14 1294 2186 269848593 269849465 0.000000e+00 1083.0
5 TraesCS4A01G209300 chr5A 94.540 641 27 5 2182 2818 269851489 269852125 0.000000e+00 983.0
6 TraesCS4A01G209300 chr4B 92.698 630 36 2 1 630 127094140 127093521 0.000000e+00 900.0
7 TraesCS4A01G209300 chr4B 93.705 556 33 2 625 1179 127093133 127092579 0.000000e+00 832.0
8 TraesCS4A01G209300 chr4B 83.784 111 16 2 1635 1744 167384551 167384660 1.380000e-18 104.0
9 TraesCS4A01G209300 chr7D 92.200 641 29 10 2182 2818 400478424 400479047 0.000000e+00 887.0
10 TraesCS4A01G209300 chr7D 92.883 281 20 0 1906 2186 400476104 400476384 2.610000e-110 409.0
11 TraesCS4A01G209300 chr7D 84.192 291 13 8 1302 1592 400475849 400476106 4.660000e-63 252.0
12 TraesCS4A01G209300 chr5D 91.888 641 31 11 2182 2818 199727852 199727229 0.000000e+00 876.0
13 TraesCS4A01G209300 chr5D 91.459 281 24 0 1906 2186 199730173 199729893 1.220000e-103 387.0
14 TraesCS4A01G209300 chr5D 89.632 299 13 12 1294 1592 199730451 199730171 5.740000e-97 364.0
15 TraesCS4A01G209300 chr1D 91.719 640 33 10 2182 2818 88758284 88758906 0.000000e+00 870.0
16 TraesCS4A01G209300 chr1D 91.103 281 25 0 1906 2186 88755966 88756246 5.700000e-102 381.0
17 TraesCS4A01G209300 chr1D 90.000 300 16 9 1294 1592 88755682 88755968 2.650000e-100 375.0
18 TraesCS4A01G209300 chr1D 88.629 299 27 4 2421 2715 206039143 206039438 9.600000e-95 357.0
19 TraesCS4A01G209300 chr1A 91.264 641 34 11 2182 2818 517803391 517804013 0.000000e+00 854.0
20 TraesCS4A01G209300 chr1A 90.747 281 26 0 1906 2186 517800816 517801096 2.650000e-100 375.0
21 TraesCS4A01G209300 chr1A 91.165 249 13 7 1344 1592 517801577 517801816 2.090000e-86 329.0
22 TraesCS4A01G209300 chr1A 88.043 276 18 7 1317 1592 517800558 517800818 2.110000e-81 313.0
23 TraesCS4A01G209300 chr1A 76.518 247 35 11 1515 1744 13488105 13488345 2.300000e-21 113.0
24 TraesCS4A01G209300 chr3B 91.032 591 44 7 1408 1990 659451691 659452280 0.000000e+00 789.0
25 TraesCS4A01G209300 chr3B 84.783 230 28 7 1957 2183 739685775 739686000 1.020000e-54 224.0
26 TraesCS4A01G209300 chr3B 86.957 69 8 1 1293 1361 764119429 764119362 3.010000e-10 76.8
27 TraesCS4A01G209300 chr2A 87.733 375 36 5 2349 2715 700401213 700400841 2.010000e-116 429.0
28 TraesCS4A01G209300 chr3D 90.268 298 24 3 2421 2715 278513107 278513402 4.410000e-103 385.0
29 TraesCS4A01G209300 chr3D 95.455 44 2 0 1294 1337 369457617 369457574 1.400000e-08 71.3
30 TraesCS4A01G209300 chr3A 79.570 186 28 6 1570 1747 639643553 639643370 1.060000e-24 124.0
31 TraesCS4A01G209300 chr7B 84.821 112 17 0 1633 1744 572508082 572508193 2.300000e-21 113.0
32 TraesCS4A01G209300 chr5B 76.518 247 35 11 1515 1744 141158660 141158900 2.300000e-21 113.0
33 TraesCS4A01G209300 chr5B 100.000 28 0 0 2157 2184 141161268 141161295 5.000000e-03 52.8
34 TraesCS4A01G209300 chr6B 83.784 111 16 2 1635 1744 45730946 45731055 1.380000e-18 104.0
35 TraesCS4A01G209300 chr2D 97.500 40 1 0 1294 1333 487613593 487613554 5.040000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G209300 chr4A 502899389 502902207 2818 True 5206.000000 5206 100.000000 1 2819 1 chr4A.!!$R1 2818
1 TraesCS4A01G209300 chr4D 90988371 90989518 1147 True 1857.000000 1857 95.841000 1 1151 1 chr4D.!!$R1 1150
2 TraesCS4A01G209300 chr6D 168287419 168290935 3516 False 1067.500000 1122 92.609500 1297 2818 2 chr6D.!!$F1 1521
3 TraesCS4A01G209300 chr5A 269848593 269852125 3532 False 1033.000000 1083 91.727000 1294 2818 2 chr5A.!!$F1 1524
4 TraesCS4A01G209300 chr4B 127092579 127094140 1561 True 866.000000 900 93.201500 1 1179 2 chr4B.!!$R1 1178
5 TraesCS4A01G209300 chr7D 400475849 400479047 3198 False 516.000000 887 89.758333 1302 2818 3 chr7D.!!$F1 1516
6 TraesCS4A01G209300 chr5D 199727229 199730451 3222 True 542.333333 876 90.993000 1294 2818 3 chr5D.!!$R1 1524
7 TraesCS4A01G209300 chr1D 88755682 88758906 3224 False 542.000000 870 90.940667 1294 2818 3 chr1D.!!$F2 1524
8 TraesCS4A01G209300 chr1A 517800558 517804013 3455 False 467.750000 854 90.304750 1317 2818 4 chr1A.!!$F2 1501
9 TraesCS4A01G209300 chr3B 659451691 659452280 589 False 789.000000 789 91.032000 1408 1990 1 chr3B.!!$F1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
199 200 0.546122 CCATTTCCCTGGTCATCGGA 59.454 55.0 0.00 0.0 0.0 4.55 F
1717 2760 0.036858 TCACGTTCATCCATTGGCGA 60.037 50.0 6.65 0.0 0.0 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1753 2796 0.036306 AGGCTGTAAAGAACCGGTGG 59.964 55.0 8.52 0.0 0.00 4.61 R
2699 6081 2.095567 CACTGACAACAGCTAACATGGC 60.096 50.0 0.00 0.0 46.95 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 1.549170 GGCGAAGAAAGTAGTCCTCCA 59.451 52.381 0.00 0.00 0.00 3.86
85 86 2.252072 TAGTCCTCCACGGCAATGGC 62.252 60.000 0.00 0.00 39.85 4.40
119 120 1.196808 CCGTGGAGACAAAATTCACCG 59.803 52.381 0.00 0.00 46.06 4.94
121 122 1.880027 GTGGAGACAAAATTCACCGCT 59.120 47.619 0.00 0.00 46.06 5.52
171 172 1.670406 CTGGAGGTGCAGCACAGAC 60.670 63.158 26.78 15.45 35.86 3.51
199 200 0.546122 CCATTTCCCTGGTCATCGGA 59.454 55.000 0.00 0.00 0.00 4.55
276 277 3.385577 GGTCGAGCAGTATTCCTCATTC 58.614 50.000 10.30 0.00 0.00 2.67
372 374 3.311028 GGGGATTAAAGGAAATGGGGGAA 60.311 47.826 0.00 0.00 0.00 3.97
603 605 6.051074 TGCATACACATTTCCATCAGTAGAG 58.949 40.000 0.00 0.00 0.00 2.43
604 606 6.127083 TGCATACACATTTCCATCAGTAGAGA 60.127 38.462 0.00 0.00 0.00 3.10
657 1052 2.868253 TCGAGCTCACGATTCTCCA 58.132 52.632 15.40 0.00 37.37 3.86
704 1099 3.283684 CGCACGGAAAGGCACCAA 61.284 61.111 0.00 0.00 0.00 3.67
772 1168 3.271755 TCCCCATTCCAGATCATTTCCAA 59.728 43.478 0.00 0.00 0.00 3.53
979 1375 1.211456 CTGGAAGGAGATGAGGGCTT 58.789 55.000 0.00 0.00 0.00 4.35
1175 1573 3.966543 GTGGGTGGGTGGGTGAGG 61.967 72.222 0.00 0.00 0.00 3.86
1179 1577 2.238701 GGTGGGTGGGTGAGGGATT 61.239 63.158 0.00 0.00 0.00 3.01
1180 1578 1.774300 GTGGGTGGGTGAGGGATTT 59.226 57.895 0.00 0.00 0.00 2.17
1181 1579 0.114364 GTGGGTGGGTGAGGGATTTT 59.886 55.000 0.00 0.00 0.00 1.82
1182 1580 1.356398 GTGGGTGGGTGAGGGATTTTA 59.644 52.381 0.00 0.00 0.00 1.52
1183 1581 2.024369 GTGGGTGGGTGAGGGATTTTAT 60.024 50.000 0.00 0.00 0.00 1.40
1184 1582 2.657459 TGGGTGGGTGAGGGATTTTATT 59.343 45.455 0.00 0.00 0.00 1.40
1185 1583 3.078305 TGGGTGGGTGAGGGATTTTATTT 59.922 43.478 0.00 0.00 0.00 1.40
1186 1584 4.101114 GGGTGGGTGAGGGATTTTATTTT 58.899 43.478 0.00 0.00 0.00 1.82
1187 1585 5.222568 TGGGTGGGTGAGGGATTTTATTTTA 60.223 40.000 0.00 0.00 0.00 1.52
1188 1586 5.903010 GGGTGGGTGAGGGATTTTATTTTAT 59.097 40.000 0.00 0.00 0.00 1.40
1189 1587 6.385759 GGGTGGGTGAGGGATTTTATTTTATT 59.614 38.462 0.00 0.00 0.00 1.40
1190 1588 7.092623 GGGTGGGTGAGGGATTTTATTTTATTT 60.093 37.037 0.00 0.00 0.00 1.40
1191 1589 8.325787 GGTGGGTGAGGGATTTTATTTTATTTT 58.674 33.333 0.00 0.00 0.00 1.82
1192 1590 9.733556 GTGGGTGAGGGATTTTATTTTATTTTT 57.266 29.630 0.00 0.00 0.00 1.94
1263 1661 7.834068 TTTTAGACATTGAGAAATCGAGGAG 57.166 36.000 0.00 0.00 0.00 3.69
1264 1662 3.791245 AGACATTGAGAAATCGAGGAGC 58.209 45.455 0.00 0.00 0.00 4.70
1265 1663 3.450457 AGACATTGAGAAATCGAGGAGCT 59.550 43.478 0.00 0.00 0.00 4.09
1266 1664 3.791245 ACATTGAGAAATCGAGGAGCTC 58.209 45.455 4.71 4.71 0.00 4.09
1267 1665 2.969628 TTGAGAAATCGAGGAGCTCC 57.030 50.000 26.22 26.22 0.00 4.70
1276 1674 3.764466 AGGAGCTCCTGTTCGGCG 61.764 66.667 34.74 0.00 46.55 6.46
1281 1679 3.458163 CTCCTGTTCGGCGCCCTA 61.458 66.667 23.46 6.42 0.00 3.53
1282 1680 3.432051 CTCCTGTTCGGCGCCCTAG 62.432 68.421 23.46 13.56 0.00 3.02
1283 1681 4.530857 CCTGTTCGGCGCCCTAGG 62.531 72.222 23.46 18.73 0.00 3.02
1284 1682 4.530857 CTGTTCGGCGCCCTAGGG 62.531 72.222 24.89 24.89 38.57 3.53
1312 1710 9.670442 ATGTACAATCTCTACTATTAAAGGGGA 57.330 33.333 0.00 0.00 0.00 4.81
1320 1718 7.562454 TCTCTACTATTAAAGGGGAATCGAACA 59.438 37.037 0.00 0.00 0.00 3.18
1337 1735 2.304751 ACATCGTAATGGTTCGACCC 57.695 50.000 0.00 0.00 37.50 4.46
1361 1759 1.011968 CACCACCACCACGTACGATG 61.012 60.000 24.41 15.70 0.00 3.84
1368 1766 0.896940 ACCACGTACGATGTGTCCCT 60.897 55.000 24.41 0.00 33.37 4.20
1459 1859 2.962786 CGAACGCACGTCCCACAA 60.963 61.111 0.00 0.00 0.00 3.33
1487 1893 1.694133 CCTCCTCATCTCCTGCACCC 61.694 65.000 0.00 0.00 0.00 4.61
1488 1894 0.690411 CTCCTCATCTCCTGCACCCT 60.690 60.000 0.00 0.00 0.00 4.34
1489 1895 0.636647 TCCTCATCTCCTGCACCCTA 59.363 55.000 0.00 0.00 0.00 3.53
1490 1896 0.755686 CCTCATCTCCTGCACCCTAC 59.244 60.000 0.00 0.00 0.00 3.18
1491 1897 0.755686 CTCATCTCCTGCACCCTACC 59.244 60.000 0.00 0.00 0.00 3.18
1492 1898 0.691078 TCATCTCCTGCACCCTACCC 60.691 60.000 0.00 0.00 0.00 3.69
1596 2639 1.991121 AAAAACTTCTCCGGTTCCCC 58.009 50.000 0.00 0.00 0.00 4.81
1597 2640 0.111832 AAAACTTCTCCGGTTCCCCC 59.888 55.000 0.00 0.00 0.00 5.40
1632 2675 4.547367 GGTCGCGGCCCTTGCTAT 62.547 66.667 21.86 0.00 37.74 2.97
1633 2676 2.967615 GTCGCGGCCCTTGCTATC 60.968 66.667 6.13 0.00 37.74 2.08
1634 2677 4.585526 TCGCGGCCCTTGCTATCG 62.586 66.667 6.13 0.00 37.74 2.92
1639 2682 4.547367 GCCCTTGCTATCGGCGGT 62.547 66.667 7.21 0.65 45.43 5.68
1640 2683 3.134879 CCCTTGCTATCGGCGGTA 58.865 61.111 7.21 2.34 45.43 4.02
1641 2684 1.006102 CCCTTGCTATCGGCGGTAG 60.006 63.158 22.41 22.41 45.43 3.18
1642 2685 1.006102 CCTTGCTATCGGCGGTAGG 60.006 63.158 26.87 10.83 45.43 3.18
1643 2686 1.461091 CCTTGCTATCGGCGGTAGGA 61.461 60.000 26.87 22.67 45.43 2.94
1644 2687 0.039074 CTTGCTATCGGCGGTAGGAG 60.039 60.000 26.87 14.78 45.43 3.69
1645 2688 2.083835 TTGCTATCGGCGGTAGGAGC 62.084 60.000 26.87 17.12 45.43 4.70
1658 2701 3.555967 GGAGCCAGTCCCATCGAT 58.444 61.111 0.00 0.00 39.88 3.59
1659 2702 2.746697 GGAGCCAGTCCCATCGATA 58.253 57.895 0.00 0.00 39.88 2.92
1660 2703 1.048601 GGAGCCAGTCCCATCGATAA 58.951 55.000 0.00 0.00 39.88 1.75
1661 2704 1.416401 GGAGCCAGTCCCATCGATAAA 59.584 52.381 0.00 0.00 39.88 1.40
1662 2705 2.484889 GAGCCAGTCCCATCGATAAAC 58.515 52.381 0.00 0.00 0.00 2.01
1663 2706 2.103263 GAGCCAGTCCCATCGATAAACT 59.897 50.000 0.00 0.00 0.00 2.66
1664 2707 2.505819 AGCCAGTCCCATCGATAAACTT 59.494 45.455 0.00 0.00 0.00 2.66
1665 2708 3.054361 AGCCAGTCCCATCGATAAACTTT 60.054 43.478 0.00 0.00 0.00 2.66
1666 2709 3.312697 GCCAGTCCCATCGATAAACTTTC 59.687 47.826 0.00 0.00 0.00 2.62
1667 2710 3.877508 CCAGTCCCATCGATAAACTTTCC 59.122 47.826 0.00 0.00 0.00 3.13
1668 2711 4.513442 CAGTCCCATCGATAAACTTTCCA 58.487 43.478 0.00 0.00 0.00 3.53
1669 2712 4.332819 CAGTCCCATCGATAAACTTTCCAC 59.667 45.833 0.00 0.00 0.00 4.02
1670 2713 4.225267 AGTCCCATCGATAAACTTTCCACT 59.775 41.667 0.00 0.00 0.00 4.00
1671 2714 4.571176 GTCCCATCGATAAACTTTCCACTC 59.429 45.833 0.00 0.00 0.00 3.51
1672 2715 3.877508 CCCATCGATAAACTTTCCACTCC 59.122 47.826 0.00 0.00 0.00 3.85
1673 2716 4.384208 CCCATCGATAAACTTTCCACTCCT 60.384 45.833 0.00 0.00 0.00 3.69
1674 2717 4.811557 CCATCGATAAACTTTCCACTCCTC 59.188 45.833 0.00 0.00 0.00 3.71
1675 2718 4.467198 TCGATAAACTTTCCACTCCTCC 57.533 45.455 0.00 0.00 0.00 4.30
1676 2719 3.197116 TCGATAAACTTTCCACTCCTCCC 59.803 47.826 0.00 0.00 0.00 4.30
1677 2720 3.197983 CGATAAACTTTCCACTCCTCCCT 59.802 47.826 0.00 0.00 0.00 4.20
1678 2721 4.680975 CGATAAACTTTCCACTCCTCCCTC 60.681 50.000 0.00 0.00 0.00 4.30
1679 2722 2.424684 AACTTTCCACTCCTCCCTCT 57.575 50.000 0.00 0.00 0.00 3.69
1680 2723 2.424684 ACTTTCCACTCCTCCCTCTT 57.575 50.000 0.00 0.00 0.00 2.85
1681 2724 3.562108 ACTTTCCACTCCTCCCTCTTA 57.438 47.619 0.00 0.00 0.00 2.10
1682 2725 4.081695 ACTTTCCACTCCTCCCTCTTAT 57.918 45.455 0.00 0.00 0.00 1.73
1683 2726 4.034410 ACTTTCCACTCCTCCCTCTTATC 58.966 47.826 0.00 0.00 0.00 1.75
1684 2727 4.265078 ACTTTCCACTCCTCCCTCTTATCT 60.265 45.833 0.00 0.00 0.00 1.98
1685 2728 3.320610 TCCACTCCTCCCTCTTATCTG 57.679 52.381 0.00 0.00 0.00 2.90
1686 2729 1.691434 CCACTCCTCCCTCTTATCTGC 59.309 57.143 0.00 0.00 0.00 4.26
1687 2730 2.392662 CACTCCTCCCTCTTATCTGCA 58.607 52.381 0.00 0.00 0.00 4.41
1688 2731 2.102252 CACTCCTCCCTCTTATCTGCAC 59.898 54.545 0.00 0.00 0.00 4.57
1689 2732 1.691434 CTCCTCCCTCTTATCTGCACC 59.309 57.143 0.00 0.00 0.00 5.01
1690 2733 1.008327 TCCTCCCTCTTATCTGCACCA 59.992 52.381 0.00 0.00 0.00 4.17
1691 2734 1.139853 CCTCCCTCTTATCTGCACCAC 59.860 57.143 0.00 0.00 0.00 4.16
1692 2735 2.114616 CTCCCTCTTATCTGCACCACT 58.885 52.381 0.00 0.00 0.00 4.00
1693 2736 2.102252 CTCCCTCTTATCTGCACCACTC 59.898 54.545 0.00 0.00 0.00 3.51
1694 2737 2.114616 CCCTCTTATCTGCACCACTCT 58.885 52.381 0.00 0.00 0.00 3.24
1695 2738 3.052869 TCCCTCTTATCTGCACCACTCTA 60.053 47.826 0.00 0.00 0.00 2.43
1696 2739 3.320541 CCCTCTTATCTGCACCACTCTAG 59.679 52.174 0.00 0.00 0.00 2.43
1697 2740 4.211125 CCTCTTATCTGCACCACTCTAGA 58.789 47.826 0.00 0.00 0.00 2.43
1698 2741 4.832266 CCTCTTATCTGCACCACTCTAGAT 59.168 45.833 0.00 0.00 34.51 1.98
1699 2742 5.048083 CCTCTTATCTGCACCACTCTAGATC 60.048 48.000 0.00 0.00 32.54 2.75
1700 2743 5.449553 TCTTATCTGCACCACTCTAGATCA 58.550 41.667 0.00 0.00 32.54 2.92
1701 2744 5.300539 TCTTATCTGCACCACTCTAGATCAC 59.699 44.000 0.00 0.00 32.54 3.06
1702 2745 1.745653 TCTGCACCACTCTAGATCACG 59.254 52.381 0.00 0.00 0.00 4.35
1703 2746 1.474478 CTGCACCACTCTAGATCACGT 59.526 52.381 0.00 0.00 0.00 4.49
1704 2747 1.893137 TGCACCACTCTAGATCACGTT 59.107 47.619 0.00 0.00 0.00 3.99
1705 2748 2.094700 TGCACCACTCTAGATCACGTTC 60.095 50.000 0.00 0.00 0.00 3.95
1706 2749 2.094700 GCACCACTCTAGATCACGTTCA 60.095 50.000 0.00 0.00 0.00 3.18
1707 2750 3.429547 GCACCACTCTAGATCACGTTCAT 60.430 47.826 0.00 0.00 0.00 2.57
1708 2751 4.355437 CACCACTCTAGATCACGTTCATC 58.645 47.826 0.00 0.00 0.00 2.92
1709 2752 3.381908 ACCACTCTAGATCACGTTCATCC 59.618 47.826 0.00 0.00 0.00 3.51
1710 2753 3.381590 CCACTCTAGATCACGTTCATCCA 59.618 47.826 0.00 0.00 0.00 3.41
1711 2754 4.038522 CCACTCTAGATCACGTTCATCCAT 59.961 45.833 0.00 0.00 0.00 3.41
1712 2755 5.452496 CCACTCTAGATCACGTTCATCCATT 60.452 44.000 0.00 0.00 0.00 3.16
1713 2756 5.461407 CACTCTAGATCACGTTCATCCATTG 59.539 44.000 0.00 0.00 0.00 2.82
1714 2757 4.948847 TCTAGATCACGTTCATCCATTGG 58.051 43.478 0.00 0.00 0.00 3.16
1715 2758 2.292267 AGATCACGTTCATCCATTGGC 58.708 47.619 0.00 0.00 0.00 4.52
1716 2759 1.003545 GATCACGTTCATCCATTGGCG 60.004 52.381 0.00 0.00 0.00 5.69
1717 2760 0.036858 TCACGTTCATCCATTGGCGA 60.037 50.000 6.65 0.00 0.00 5.54
1718 2761 0.374758 CACGTTCATCCATTGGCGAG 59.625 55.000 6.65 0.00 0.00 5.03
1719 2762 0.249120 ACGTTCATCCATTGGCGAGA 59.751 50.000 6.65 0.00 0.00 4.04
1720 2763 1.134401 ACGTTCATCCATTGGCGAGAT 60.134 47.619 6.65 0.00 0.00 2.75
1721 2764 1.942657 CGTTCATCCATTGGCGAGATT 59.057 47.619 0.00 0.00 0.00 2.40
1722 2765 2.286595 CGTTCATCCATTGGCGAGATTG 60.287 50.000 0.00 0.00 0.00 2.67
1723 2766 1.971481 TCATCCATTGGCGAGATTGG 58.029 50.000 0.00 0.00 0.00 3.16
1724 2767 0.313043 CATCCATTGGCGAGATTGGC 59.687 55.000 0.00 0.00 0.00 4.52
1725 2768 1.168407 ATCCATTGGCGAGATTGGCG 61.168 55.000 0.00 0.00 37.19 5.69
1726 2769 2.717485 CATTGGCGAGATTGGCGG 59.283 61.111 0.00 0.00 37.19 6.13
1741 2784 4.069232 CGGCGGTGCAGAAGGAGA 62.069 66.667 0.00 0.00 0.00 3.71
1742 2785 2.125350 GGCGGTGCAGAAGGAGAG 60.125 66.667 0.00 0.00 0.00 3.20
1743 2786 2.817396 GCGGTGCAGAAGGAGAGC 60.817 66.667 0.00 0.00 0.00 4.09
1744 2787 2.977178 CGGTGCAGAAGGAGAGCT 59.023 61.111 0.00 0.00 0.00 4.09
1745 2788 1.153667 CGGTGCAGAAGGAGAGCTC 60.154 63.158 5.27 5.27 0.00 4.09
1754 2797 2.809010 GGAGAGCTCCTACGCACC 59.191 66.667 10.93 0.00 46.16 5.01
1755 2798 2.052690 GGAGAGCTCCTACGCACCA 61.053 63.158 10.93 0.00 46.16 4.17
1756 2799 1.139947 GAGAGCTCCTACGCACCAC 59.860 63.158 10.93 0.00 0.00 4.16
1757 2800 2.184579 GAGCTCCTACGCACCACC 59.815 66.667 0.87 0.00 0.00 4.61
1758 2801 3.701604 GAGCTCCTACGCACCACCG 62.702 68.421 0.87 0.00 0.00 4.94
1759 2802 4.814294 GCTCCTACGCACCACCGG 62.814 72.222 0.00 0.00 0.00 5.28
1760 2803 3.379445 CTCCTACGCACCACCGGT 61.379 66.667 0.00 0.00 35.62 5.28
1761 2804 2.918802 TCCTACGCACCACCGGTT 60.919 61.111 2.97 0.00 31.02 4.44
1762 2805 2.433664 CCTACGCACCACCGGTTC 60.434 66.667 2.97 0.00 31.02 3.62
1763 2806 2.654877 CTACGCACCACCGGTTCT 59.345 61.111 2.97 0.00 31.02 3.01
1764 2807 1.005394 CTACGCACCACCGGTTCTT 60.005 57.895 2.97 0.00 31.02 2.52
1765 2808 0.601841 CTACGCACCACCGGTTCTTT 60.602 55.000 2.97 0.00 31.02 2.52
1766 2809 0.678395 TACGCACCACCGGTTCTTTA 59.322 50.000 2.97 0.00 31.02 1.85
1767 2810 0.881600 ACGCACCACCGGTTCTTTAC 60.882 55.000 2.97 0.00 31.02 2.01
1768 2811 0.881159 CGCACCACCGGTTCTTTACA 60.881 55.000 2.97 0.00 31.02 2.41
1769 2812 0.872388 GCACCACCGGTTCTTTACAG 59.128 55.000 2.97 0.00 31.02 2.74
1770 2813 0.872388 CACCACCGGTTCTTTACAGC 59.128 55.000 2.97 0.00 31.02 4.40
1771 2814 0.250597 ACCACCGGTTCTTTACAGCC 60.251 55.000 2.97 0.00 27.29 4.85
1772 2815 0.036306 CCACCGGTTCTTTACAGCCT 59.964 55.000 2.97 0.00 0.00 4.58
1773 2816 1.276989 CCACCGGTTCTTTACAGCCTA 59.723 52.381 2.97 0.00 0.00 3.93
1774 2817 2.093128 CCACCGGTTCTTTACAGCCTAT 60.093 50.000 2.97 0.00 0.00 2.57
1775 2818 2.936498 CACCGGTTCTTTACAGCCTATG 59.064 50.000 2.97 0.00 0.00 2.23
1776 2819 2.570302 ACCGGTTCTTTACAGCCTATGT 59.430 45.455 0.00 0.00 46.45 2.29
1777 2820 2.936498 CCGGTTCTTTACAGCCTATGTG 59.064 50.000 0.00 0.00 43.80 3.21
1778 2821 3.369052 CCGGTTCTTTACAGCCTATGTGA 60.369 47.826 0.00 0.00 43.80 3.58
1779 2822 4.250464 CGGTTCTTTACAGCCTATGTGAA 58.750 43.478 0.00 0.00 43.80 3.18
1780 2823 4.876107 CGGTTCTTTACAGCCTATGTGAAT 59.124 41.667 0.00 0.00 43.80 2.57
1781 2824 5.354234 CGGTTCTTTACAGCCTATGTGAATT 59.646 40.000 0.00 0.00 43.80 2.17
1782 2825 6.555315 GGTTCTTTACAGCCTATGTGAATTG 58.445 40.000 0.00 0.00 43.80 2.32
1783 2826 5.818136 TCTTTACAGCCTATGTGAATTGC 57.182 39.130 0.00 0.00 43.80 3.56
1784 2827 5.252547 TCTTTACAGCCTATGTGAATTGCA 58.747 37.500 0.00 0.00 43.80 4.08
1785 2828 5.355071 TCTTTACAGCCTATGTGAATTGCAG 59.645 40.000 0.00 0.00 43.80 4.41
1786 2829 1.747355 ACAGCCTATGTGAATTGCAGC 59.253 47.619 0.00 0.00 41.91 5.25
1787 2830 1.746787 CAGCCTATGTGAATTGCAGCA 59.253 47.619 0.00 0.00 0.00 4.41
1788 2831 2.022195 AGCCTATGTGAATTGCAGCAG 58.978 47.619 0.00 0.00 0.00 4.24
1789 2832 1.535437 GCCTATGTGAATTGCAGCAGC 60.535 52.381 0.00 0.00 42.57 5.25
1790 2833 1.268386 CCTATGTGAATTGCAGCAGCG 60.268 52.381 0.00 0.00 46.23 5.18
1791 2834 0.099259 TATGTGAATTGCAGCAGCGC 59.901 50.000 0.00 0.00 46.23 5.92
1792 2835 2.505557 GTGAATTGCAGCAGCGCC 60.506 61.111 2.29 0.00 46.23 6.53
1793 2836 2.984718 TGAATTGCAGCAGCGCCA 60.985 55.556 2.29 0.00 46.23 5.69
1794 2837 2.202570 GAATTGCAGCAGCGCCAG 60.203 61.111 2.29 0.00 46.23 4.85
1795 2838 2.674033 AATTGCAGCAGCGCCAGA 60.674 55.556 2.29 0.00 46.23 3.86
1796 2839 2.001361 GAATTGCAGCAGCGCCAGAT 62.001 55.000 2.29 0.00 46.23 2.90
1797 2840 2.001361 AATTGCAGCAGCGCCAGATC 62.001 55.000 2.29 0.00 46.23 2.75
1800 2843 3.260483 CAGCAGCGCCAGATCGAC 61.260 66.667 2.29 0.00 0.00 4.20
1801 2844 4.862092 AGCAGCGCCAGATCGACG 62.862 66.667 2.29 0.00 0.00 5.12
1803 2846 2.507102 CAGCGCCAGATCGACGTT 60.507 61.111 2.29 0.00 0.00 3.99
1804 2847 2.507102 AGCGCCAGATCGACGTTG 60.507 61.111 2.29 0.00 0.00 4.10
1805 2848 2.809601 GCGCCAGATCGACGTTGT 60.810 61.111 0.00 0.00 0.00 3.32
1806 2849 2.380410 GCGCCAGATCGACGTTGTT 61.380 57.895 0.00 0.00 0.00 2.83
1807 2850 1.416049 CGCCAGATCGACGTTGTTG 59.584 57.895 1.96 0.69 0.00 3.33
1808 2851 1.282248 CGCCAGATCGACGTTGTTGT 61.282 55.000 1.96 0.00 0.00 3.32
1809 2852 0.865769 GCCAGATCGACGTTGTTGTT 59.134 50.000 1.96 0.00 0.00 2.83
1810 2853 1.398451 GCCAGATCGACGTTGTTGTTG 60.398 52.381 1.96 0.00 0.00 3.33
1811 2854 1.194547 CCAGATCGACGTTGTTGTTGG 59.805 52.381 1.96 3.70 0.00 3.77
1812 2855 1.864711 CAGATCGACGTTGTTGTTGGT 59.135 47.619 1.96 0.00 0.00 3.67
1813 2856 1.864711 AGATCGACGTTGTTGTTGGTG 59.135 47.619 1.96 0.00 0.00 4.17
1814 2857 1.595794 GATCGACGTTGTTGTTGGTGT 59.404 47.619 1.96 0.00 0.00 4.16
1815 2858 2.290531 TCGACGTTGTTGTTGGTGTA 57.709 45.000 1.96 0.00 0.00 2.90
1816 2859 2.823984 TCGACGTTGTTGTTGGTGTAT 58.176 42.857 1.96 0.00 0.00 2.29
1817 2860 2.540516 TCGACGTTGTTGTTGGTGTATG 59.459 45.455 1.96 0.00 0.00 2.39
1818 2861 2.540516 CGACGTTGTTGTTGGTGTATGA 59.459 45.455 0.00 0.00 0.00 2.15
1819 2862 3.602946 CGACGTTGTTGTTGGTGTATGAC 60.603 47.826 0.00 0.00 0.00 3.06
1820 2863 2.285756 ACGTTGTTGTTGGTGTATGACG 59.714 45.455 0.00 0.00 0.00 4.35
1821 2864 2.646250 GTTGTTGTTGGTGTATGACGC 58.354 47.619 0.00 0.00 0.00 5.19
1822 2865 1.954927 TGTTGTTGGTGTATGACGCA 58.045 45.000 0.00 0.00 0.00 5.24
1823 2866 2.499197 TGTTGTTGGTGTATGACGCAT 58.501 42.857 0.00 0.00 0.00 4.73
1824 2867 2.881513 TGTTGTTGGTGTATGACGCATT 59.118 40.909 0.00 0.00 0.00 3.56
1825 2868 3.316588 TGTTGTTGGTGTATGACGCATTT 59.683 39.130 0.00 0.00 0.00 2.32
1826 2869 3.550950 TGTTGGTGTATGACGCATTTG 57.449 42.857 0.00 0.00 0.00 2.32
1827 2870 2.881513 TGTTGGTGTATGACGCATTTGT 59.118 40.909 0.00 0.00 0.00 2.83
1828 2871 3.058570 TGTTGGTGTATGACGCATTTGTC 60.059 43.478 0.00 0.00 39.37 3.18
1829 2872 3.052455 TGGTGTATGACGCATTTGTCT 57.948 42.857 0.00 0.00 39.64 3.41
1830 2873 2.741517 TGGTGTATGACGCATTTGTCTG 59.258 45.455 0.00 0.00 39.64 3.51
1831 2874 2.476185 GGTGTATGACGCATTTGTCTGC 60.476 50.000 0.00 0.00 39.64 4.26
1837 2880 4.847255 GCATTTGTCTGCGTCACC 57.153 55.556 0.00 0.00 31.49 4.02
1838 2881 1.154413 GCATTTGTCTGCGTCACCG 60.154 57.895 0.00 0.00 31.49 4.94
1839 2882 1.497278 CATTTGTCTGCGTCACCGG 59.503 57.895 0.00 0.00 33.68 5.28
1840 2883 1.671054 ATTTGTCTGCGTCACCGGG 60.671 57.895 6.32 0.00 33.68 5.73
1841 2884 3.818121 TTTGTCTGCGTCACCGGGG 62.818 63.158 6.32 0.00 33.68 5.73
1852 2895 4.691359 ACCGGGGGTGCTCGTACT 62.691 66.667 6.32 0.00 32.98 2.73
1853 2896 2.440796 CCGGGGGTGCTCGTACTA 60.441 66.667 0.00 0.00 0.00 1.82
1854 2897 1.831286 CCGGGGGTGCTCGTACTAT 60.831 63.158 0.00 0.00 0.00 2.12
1855 2898 0.538057 CCGGGGGTGCTCGTACTATA 60.538 60.000 0.00 0.00 0.00 1.31
1856 2899 0.879765 CGGGGGTGCTCGTACTATAG 59.120 60.000 0.00 0.00 0.00 1.31
1857 2900 1.254954 GGGGGTGCTCGTACTATAGG 58.745 60.000 4.43 0.00 0.00 2.57
1858 2901 0.602060 GGGGTGCTCGTACTATAGGC 59.398 60.000 4.43 0.00 0.00 3.93
1859 2902 1.618487 GGGTGCTCGTACTATAGGCT 58.382 55.000 4.43 0.00 0.00 4.58
1860 2903 1.269998 GGGTGCTCGTACTATAGGCTG 59.730 57.143 4.43 0.00 0.00 4.85
1861 2904 1.955080 GGTGCTCGTACTATAGGCTGT 59.045 52.381 4.43 0.00 0.00 4.40
1862 2905 2.030981 GGTGCTCGTACTATAGGCTGTC 60.031 54.545 4.43 0.00 0.00 3.51
1863 2906 2.030981 GTGCTCGTACTATAGGCTGTCC 60.031 54.545 4.43 0.00 0.00 4.02
1864 2907 2.228059 GCTCGTACTATAGGCTGTCCA 58.772 52.381 4.43 0.00 33.74 4.02
1865 2908 2.621998 GCTCGTACTATAGGCTGTCCAA 59.378 50.000 4.43 0.00 33.74 3.53
1866 2909 3.256136 GCTCGTACTATAGGCTGTCCAAT 59.744 47.826 4.43 0.00 33.74 3.16
1867 2910 4.799678 CTCGTACTATAGGCTGTCCAATG 58.200 47.826 4.43 0.00 33.74 2.82
1868 2911 3.572682 TCGTACTATAGGCTGTCCAATGG 59.427 47.826 4.43 0.00 33.74 3.16
1869 2912 3.321111 CGTACTATAGGCTGTCCAATGGT 59.679 47.826 4.43 0.00 33.74 3.55
1870 2913 4.521639 CGTACTATAGGCTGTCCAATGGTA 59.478 45.833 4.43 0.00 33.74 3.25
1871 2914 5.185249 CGTACTATAGGCTGTCCAATGGTAT 59.815 44.000 4.43 0.00 33.74 2.73
1872 2915 5.489792 ACTATAGGCTGTCCAATGGTATG 57.510 43.478 4.43 0.00 33.74 2.39
1873 2916 4.907875 ACTATAGGCTGTCCAATGGTATGT 59.092 41.667 4.43 0.00 33.74 2.29
1874 2917 2.717639 AGGCTGTCCAATGGTATGTC 57.282 50.000 0.00 0.00 33.74 3.06
1875 2918 1.134401 AGGCTGTCCAATGGTATGTCG 60.134 52.381 0.00 0.00 33.74 4.35
1876 2919 1.299541 GCTGTCCAATGGTATGTCGG 58.700 55.000 0.00 0.00 0.00 4.79
1877 2920 1.406887 GCTGTCCAATGGTATGTCGGT 60.407 52.381 0.00 0.00 0.00 4.69
1878 2921 2.279741 CTGTCCAATGGTATGTCGGTG 58.720 52.381 0.00 0.00 0.00 4.94
1879 2922 1.014352 GTCCAATGGTATGTCGGTGC 58.986 55.000 0.00 0.00 0.00 5.01
1880 2923 0.107410 TCCAATGGTATGTCGGTGCC 60.107 55.000 0.00 0.00 0.00 5.01
1881 2924 1.436195 CCAATGGTATGTCGGTGCCG 61.436 60.000 3.94 3.94 41.35 5.69
1882 2925 1.153249 AATGGTATGTCGGTGCCGG 60.153 57.895 10.94 0.00 40.25 6.13
1883 2926 1.618876 AATGGTATGTCGGTGCCGGA 61.619 55.000 5.05 0.00 40.25 5.14
1884 2927 2.028125 ATGGTATGTCGGTGCCGGAG 62.028 60.000 5.05 0.00 40.25 4.63
1897 2940 3.429925 CGGAGGACGTACTAGGCC 58.570 66.667 0.00 0.00 37.93 5.19
1898 2941 1.153005 CGGAGGACGTACTAGGCCT 60.153 63.158 11.78 11.78 37.93 5.19
1899 2942 0.107456 CGGAGGACGTACTAGGCCTA 59.893 60.000 13.09 13.09 37.93 3.93
1900 2943 1.877258 CGGAGGACGTACTAGGCCTAG 60.877 61.905 33.98 33.98 37.21 3.02
1901 2944 1.545204 GGAGGACGTACTAGGCCTAGG 60.545 61.905 37.09 24.43 37.49 3.02
1902 2945 1.419387 GAGGACGTACTAGGCCTAGGA 59.581 57.143 37.09 30.57 37.49 2.94
1903 2946 1.420891 AGGACGTACTAGGCCTAGGAG 59.579 57.143 37.09 28.87 37.49 3.69
1904 2947 1.142667 GGACGTACTAGGCCTAGGAGT 59.857 57.143 37.09 31.32 37.49 3.85
1905 2948 2.220313 GACGTACTAGGCCTAGGAGTG 58.780 57.143 37.09 27.64 37.49 3.51
1906 2949 1.133853 ACGTACTAGGCCTAGGAGTGG 60.134 57.143 37.09 24.94 37.49 4.00
1907 2950 1.133853 CGTACTAGGCCTAGGAGTGGT 60.134 57.143 37.09 21.79 37.49 4.16
1912 2955 2.125512 GCCTAGGAGTGGTGTGCG 60.126 66.667 14.75 0.00 0.00 5.34
1929 2972 2.551912 CGGGTGCTGCTCGGTTTTT 61.552 57.895 0.00 0.00 37.44 1.94
2008 3052 2.678934 TAGGTGCGACGGAAGGCT 60.679 61.111 0.00 0.00 36.51 4.58
2070 3114 2.363975 GCAGGTATGACACGGGGGA 61.364 63.158 0.00 0.00 0.00 4.81
2094 3138 3.384467 TCGGATGATCACACATGCTTCTA 59.616 43.478 0.00 0.00 36.67 2.10
2097 3141 4.749099 GGATGATCACACATGCTTCTACTC 59.251 45.833 0.00 0.00 36.08 2.59
2138 3182 3.663105 GTCGTGTTCTACTTCTTCGTCAC 59.337 47.826 0.00 0.00 0.00 3.67
2163 3207 7.093640 ACGTTCAGTTACCCAATAGTTGATCTA 60.094 37.037 0.00 0.00 0.00 1.98
2254 5632 2.691526 TGCTAATGTAGTCAGTACCGGG 59.308 50.000 6.32 0.00 0.00 5.73
2280 5658 6.109156 TGCATTGTAGTTCTCTTTAGTCCA 57.891 37.500 0.00 0.00 0.00 4.02
2327 5705 1.726853 CTCAAAAGTAGTCCCAGCCG 58.273 55.000 0.00 0.00 0.00 5.52
2344 5722 1.524621 CGCCGCTCCATGGAAGAAT 60.525 57.895 17.00 0.00 0.00 2.40
2353 5731 4.702131 GCTCCATGGAAGAATTAACACTGT 59.298 41.667 17.00 0.00 0.00 3.55
2366 5744 8.034804 AGAATTAACACTGTTGCTTTCTGTTTT 58.965 29.630 4.57 0.00 0.00 2.43
2451 5829 4.213482 ACACGAGAAAGAAGCCATTACAAC 59.787 41.667 0.00 0.00 0.00 3.32
2464 5844 6.805713 AGCCATTACAACCACTTTATATTGC 58.194 36.000 0.00 0.00 0.00 3.56
2486 5866 5.231147 TGCGAAAACATCAAAAGCTTGTAAC 59.769 36.000 0.00 0.00 33.94 2.50
2661 6041 7.461749 TGACTTGGTTTTCCTTGATCTCTTAT 58.538 34.615 0.00 0.00 41.38 1.73
2699 6081 5.437289 TCTTGAGTTTGTGCAGGTTTATG 57.563 39.130 0.00 0.00 0.00 1.90
2763 6145 9.453830 AGGGGAAGTTGAAGTAGATAGAATAAT 57.546 33.333 0.00 0.00 0.00 1.28
2796 6178 8.755028 TGTCCTACTACATAAAGCATGTTTCTA 58.245 33.333 0.00 0.00 46.01 2.10
2818 6200 9.830975 TTCTATTTGATAAGCTATGTTGTGCTA 57.169 29.630 0.00 0.00 38.75 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 103 1.879380 CAGCGGTGAATTTTGTCTCCA 59.121 47.619 9.50 0.00 31.81 3.86
276 277 2.167487 GGGAGAGGCACTTCTCAGTAAG 59.833 54.545 11.36 0.00 41.55 2.34
372 374 6.239217 TCAGTTTATCACTCATATGGCACT 57.761 37.500 2.13 0.00 30.92 4.40
424 426 6.443832 AGTCCATCCCCAAAAGCTAAATATT 58.556 36.000 0.00 0.00 0.00 1.28
657 1052 2.796593 GTTTGATGCTTGCTTTCGCTTT 59.203 40.909 0.00 0.00 36.97 3.51
675 1070 3.582120 CGTGCGTGTGGGCAGTTT 61.582 61.111 0.00 0.00 44.93 2.66
704 1099 0.543749 GGGTAGATTGTGAGCTGCCT 59.456 55.000 0.00 0.00 42.82 4.75
979 1375 2.856864 TGTGGGTACTCCTCCATCTCTA 59.143 50.000 0.00 0.00 35.28 2.43
1151 1549 4.596585 CACCCACCCACACCCCAC 62.597 72.222 0.00 0.00 0.00 4.61
1157 1555 3.174987 CTCACCCACCCACCCACA 61.175 66.667 0.00 0.00 0.00 4.17
1238 1636 7.148407 GCTCCTCGATTTCTCAATGTCTAAAAA 60.148 37.037 0.00 0.00 0.00 1.94
1239 1637 6.313905 GCTCCTCGATTTCTCAATGTCTAAAA 59.686 38.462 0.00 0.00 0.00 1.52
1240 1638 5.812642 GCTCCTCGATTTCTCAATGTCTAAA 59.187 40.000 0.00 0.00 0.00 1.85
1241 1639 5.127845 AGCTCCTCGATTTCTCAATGTCTAA 59.872 40.000 0.00 0.00 0.00 2.10
1242 1640 4.646945 AGCTCCTCGATTTCTCAATGTCTA 59.353 41.667 0.00 0.00 0.00 2.59
1243 1641 3.450457 AGCTCCTCGATTTCTCAATGTCT 59.550 43.478 0.00 0.00 0.00 3.41
1244 1642 3.791245 AGCTCCTCGATTTCTCAATGTC 58.209 45.455 0.00 0.00 0.00 3.06
1245 1643 3.431486 GGAGCTCCTCGATTTCTCAATGT 60.431 47.826 26.25 0.00 0.00 2.71
1246 1644 3.129871 GGAGCTCCTCGATTTCTCAATG 58.870 50.000 26.25 0.00 0.00 2.82
1247 1645 3.037549 AGGAGCTCCTCGATTTCTCAAT 58.962 45.455 30.40 2.58 44.77 2.57
1248 1646 2.167281 CAGGAGCTCCTCGATTTCTCAA 59.833 50.000 33.06 0.00 46.65 3.02
1249 1647 1.753649 CAGGAGCTCCTCGATTTCTCA 59.246 52.381 33.06 0.00 46.65 3.27
1250 1648 1.754226 ACAGGAGCTCCTCGATTTCTC 59.246 52.381 33.06 1.32 46.65 2.87
1251 1649 1.859302 ACAGGAGCTCCTCGATTTCT 58.141 50.000 33.06 6.69 46.65 2.52
1252 1650 2.545731 GAACAGGAGCTCCTCGATTTC 58.454 52.381 33.06 24.81 46.65 2.17
1253 1651 1.134965 CGAACAGGAGCTCCTCGATTT 60.135 52.381 33.06 21.47 46.65 2.17
1254 1652 0.457851 CGAACAGGAGCTCCTCGATT 59.542 55.000 33.06 24.95 46.65 3.34
1255 1653 1.388065 CCGAACAGGAGCTCCTCGAT 61.388 60.000 32.96 22.86 46.65 3.59
1256 1654 2.046864 CCGAACAGGAGCTCCTCGA 61.047 63.158 32.96 0.00 46.65 4.04
1257 1655 2.492090 CCGAACAGGAGCTCCTCG 59.508 66.667 33.06 29.77 46.65 4.63
1258 1656 2.185608 GCCGAACAGGAGCTCCTC 59.814 66.667 33.06 20.44 46.65 3.71
1264 1662 3.432051 CTAGGGCGCCGAACAGGAG 62.432 68.421 22.54 5.41 45.00 3.69
1265 1663 3.458163 CTAGGGCGCCGAACAGGA 61.458 66.667 22.54 0.00 45.00 3.86
1266 1664 4.530857 CCTAGGGCGCCGAACAGG 62.531 72.222 22.54 19.02 44.97 4.00
1267 1665 4.530857 CCCTAGGGCGCCGAACAG 62.531 72.222 22.54 13.90 0.00 3.16
1277 1675 2.975489 AGAGATTGTACATGCCCTAGGG 59.025 50.000 24.89 24.89 38.57 3.53
1278 1676 4.835615 AGTAGAGATTGTACATGCCCTAGG 59.164 45.833 0.06 0.06 0.00 3.02
1279 1677 7.710676 ATAGTAGAGATTGTACATGCCCTAG 57.289 40.000 0.00 0.00 0.00 3.02
1280 1678 9.596308 TTAATAGTAGAGATTGTACATGCCCTA 57.404 33.333 0.00 0.00 0.00 3.53
1281 1679 8.492415 TTAATAGTAGAGATTGTACATGCCCT 57.508 34.615 0.00 0.00 0.00 5.19
1282 1680 9.209175 CTTTAATAGTAGAGATTGTACATGCCC 57.791 37.037 0.00 0.00 0.00 5.36
1283 1681 9.209175 CCTTTAATAGTAGAGATTGTACATGCC 57.791 37.037 0.00 0.00 0.00 4.40
1284 1682 9.209175 CCCTTTAATAGTAGAGATTGTACATGC 57.791 37.037 0.00 0.00 0.00 4.06
1285 1683 9.712305 CCCCTTTAATAGTAGAGATTGTACATG 57.288 37.037 0.00 0.00 0.00 3.21
1286 1684 9.670442 TCCCCTTTAATAGTAGAGATTGTACAT 57.330 33.333 0.00 0.00 0.00 2.29
1287 1685 9.496710 TTCCCCTTTAATAGTAGAGATTGTACA 57.503 33.333 0.00 0.00 0.00 2.90
1290 1688 8.368668 CGATTCCCCTTTAATAGTAGAGATTGT 58.631 37.037 0.00 0.00 0.00 2.71
1291 1689 8.585881 TCGATTCCCCTTTAATAGTAGAGATTG 58.414 37.037 0.00 0.00 0.00 2.67
1292 1690 8.722622 TCGATTCCCCTTTAATAGTAGAGATT 57.277 34.615 0.00 0.00 0.00 2.40
1312 1710 4.266976 GTCGAACCATTACGATGTTCGATT 59.733 41.667 23.78 0.00 45.67 3.34
1320 1718 0.466963 GGGGGTCGAACCATTACGAT 59.533 55.000 23.64 0.00 41.02 3.73
1345 1743 0.319211 ACACATCGTACGTGGTGGTG 60.319 55.000 30.38 24.41 38.74 4.17
1346 1744 0.038892 GACACATCGTACGTGGTGGT 60.039 55.000 30.38 21.42 38.74 4.16
1347 1745 0.734942 GGACACATCGTACGTGGTGG 60.735 60.000 30.38 19.42 38.74 4.61
1368 1766 0.759436 GATAGGAGAAGCGGGGGTGA 60.759 60.000 0.00 0.00 0.00 4.02
1404 1802 8.925700 TCTCTTTTCTTCTTCTTTTTGTTTTGC 58.074 29.630 0.00 0.00 0.00 3.68
1406 1804 9.424319 GGTCTCTTTTCTTCTTCTTTTTGTTTT 57.576 29.630 0.00 0.00 0.00 2.43
1410 1808 6.975197 GTGGGTCTCTTTTCTTCTTCTTTTTG 59.025 38.462 0.00 0.00 0.00 2.44
1459 1859 1.686110 GATGAGGAGGACGGGTGGT 60.686 63.158 0.00 0.00 0.00 4.16
1487 1893 1.807495 GATCGGGAGCGAAGGGGTAG 61.807 65.000 0.00 0.00 0.00 3.18
1488 1894 1.831286 GATCGGGAGCGAAGGGGTA 60.831 63.158 0.00 0.00 0.00 3.69
1489 1895 3.155167 GATCGGGAGCGAAGGGGT 61.155 66.667 0.00 0.00 0.00 4.95
1490 1896 3.930012 GGATCGGGAGCGAAGGGG 61.930 72.222 0.00 0.00 0.00 4.79
1491 1897 3.930012 GGGATCGGGAGCGAAGGG 61.930 72.222 0.00 0.00 0.00 3.95
1492 1898 4.286320 CGGGATCGGGAGCGAAGG 62.286 72.222 0.00 0.00 0.00 3.46
1542 1948 4.166888 GAGGCGGCATCTGGAGCA 62.167 66.667 13.08 0.00 0.00 4.26
1615 2658 4.547367 ATAGCAAGGGCCGCGACC 62.547 66.667 8.23 4.68 42.56 4.79
1616 2659 2.967615 GATAGCAAGGGCCGCGAC 60.968 66.667 8.23 0.00 42.56 5.19
1617 2660 4.585526 CGATAGCAAGGGCCGCGA 62.586 66.667 8.23 0.00 42.56 5.87
1622 2665 3.159858 TACCGCCGATAGCAAGGGC 62.160 63.158 0.00 0.00 44.04 5.19
1623 2666 1.006102 CTACCGCCGATAGCAAGGG 60.006 63.158 0.00 0.00 44.04 3.95
1624 2667 1.006102 CCTACCGCCGATAGCAAGG 60.006 63.158 0.00 0.00 44.04 3.61
1625 2668 0.039074 CTCCTACCGCCGATAGCAAG 60.039 60.000 0.00 0.00 44.04 4.01
1626 2669 2.038690 CTCCTACCGCCGATAGCAA 58.961 57.895 0.00 0.00 44.04 3.91
1627 2670 2.561956 GCTCCTACCGCCGATAGCA 61.562 63.158 0.00 0.00 44.04 3.49
1628 2671 2.258897 GCTCCTACCGCCGATAGC 59.741 66.667 0.00 0.00 38.52 2.97
1629 2672 2.963371 GGCTCCTACCGCCGATAG 59.037 66.667 0.00 0.00 37.87 2.08
1635 2678 3.851128 GGGACTGGCTCCTACCGC 61.851 72.222 0.00 0.00 39.39 5.68
1636 2679 1.749334 GATGGGACTGGCTCCTACCG 61.749 65.000 0.00 0.00 39.39 4.02
1637 2680 1.749334 CGATGGGACTGGCTCCTACC 61.749 65.000 0.00 0.00 39.39 3.18
1638 2681 0.755698 TCGATGGGACTGGCTCCTAC 60.756 60.000 0.00 0.00 39.39 3.18
1639 2682 0.188587 ATCGATGGGACTGGCTCCTA 59.811 55.000 0.00 0.00 39.39 2.94
1640 2683 0.188587 TATCGATGGGACTGGCTCCT 59.811 55.000 8.54 0.00 39.39 3.69
1641 2684 1.048601 TTATCGATGGGACTGGCTCC 58.951 55.000 8.54 0.00 38.55 4.70
1642 2685 2.103263 AGTTTATCGATGGGACTGGCTC 59.897 50.000 8.54 0.00 0.00 4.70
1643 2686 2.119495 AGTTTATCGATGGGACTGGCT 58.881 47.619 8.54 0.00 0.00 4.75
1644 2687 2.622064 AGTTTATCGATGGGACTGGC 57.378 50.000 8.54 0.00 0.00 4.85
1645 2688 3.877508 GGAAAGTTTATCGATGGGACTGG 59.122 47.826 8.54 0.00 0.00 4.00
1646 2689 4.332819 GTGGAAAGTTTATCGATGGGACTG 59.667 45.833 8.54 0.00 0.00 3.51
1647 2690 4.225267 AGTGGAAAGTTTATCGATGGGACT 59.775 41.667 8.54 6.26 0.00 3.85
1648 2691 4.514401 AGTGGAAAGTTTATCGATGGGAC 58.486 43.478 8.54 3.92 0.00 4.46
1649 2692 4.383770 GGAGTGGAAAGTTTATCGATGGGA 60.384 45.833 8.54 0.00 0.00 4.37
1650 2693 3.877508 GGAGTGGAAAGTTTATCGATGGG 59.122 47.826 8.54 0.00 0.00 4.00
1651 2694 4.770795 AGGAGTGGAAAGTTTATCGATGG 58.229 43.478 8.54 0.00 0.00 3.51
1652 2695 4.811557 GGAGGAGTGGAAAGTTTATCGATG 59.188 45.833 8.54 0.00 0.00 3.84
1653 2696 4.141688 GGGAGGAGTGGAAAGTTTATCGAT 60.142 45.833 2.16 2.16 0.00 3.59
1654 2697 3.197116 GGGAGGAGTGGAAAGTTTATCGA 59.803 47.826 0.00 0.00 0.00 3.59
1655 2698 3.197983 AGGGAGGAGTGGAAAGTTTATCG 59.802 47.826 0.00 0.00 0.00 2.92
1656 2699 4.471747 AGAGGGAGGAGTGGAAAGTTTATC 59.528 45.833 0.00 0.00 0.00 1.75
1657 2700 4.439860 AGAGGGAGGAGTGGAAAGTTTAT 58.560 43.478 0.00 0.00 0.00 1.40
1658 2701 3.870559 AGAGGGAGGAGTGGAAAGTTTA 58.129 45.455 0.00 0.00 0.00 2.01
1659 2702 2.707554 AGAGGGAGGAGTGGAAAGTTT 58.292 47.619 0.00 0.00 0.00 2.66
1660 2703 2.424684 AGAGGGAGGAGTGGAAAGTT 57.575 50.000 0.00 0.00 0.00 2.66
1661 2704 2.424684 AAGAGGGAGGAGTGGAAAGT 57.575 50.000 0.00 0.00 0.00 2.66
1662 2705 4.100808 CAGATAAGAGGGAGGAGTGGAAAG 59.899 50.000 0.00 0.00 0.00 2.62
1663 2706 4.033709 CAGATAAGAGGGAGGAGTGGAAA 58.966 47.826 0.00 0.00 0.00 3.13
1664 2707 3.647636 CAGATAAGAGGGAGGAGTGGAA 58.352 50.000 0.00 0.00 0.00 3.53
1665 2708 2.691241 GCAGATAAGAGGGAGGAGTGGA 60.691 54.545 0.00 0.00 0.00 4.02
1666 2709 1.691434 GCAGATAAGAGGGAGGAGTGG 59.309 57.143 0.00 0.00 0.00 4.00
1667 2710 2.102252 GTGCAGATAAGAGGGAGGAGTG 59.898 54.545 0.00 0.00 0.00 3.51
1668 2711 2.393646 GTGCAGATAAGAGGGAGGAGT 58.606 52.381 0.00 0.00 0.00 3.85
1669 2712 1.691434 GGTGCAGATAAGAGGGAGGAG 59.309 57.143 0.00 0.00 0.00 3.69
1670 2713 1.008327 TGGTGCAGATAAGAGGGAGGA 59.992 52.381 0.00 0.00 0.00 3.71
1671 2714 1.139853 GTGGTGCAGATAAGAGGGAGG 59.860 57.143 0.00 0.00 0.00 4.30
1672 2715 2.102252 GAGTGGTGCAGATAAGAGGGAG 59.898 54.545 0.00 0.00 0.00 4.30
1673 2716 2.111384 GAGTGGTGCAGATAAGAGGGA 58.889 52.381 0.00 0.00 0.00 4.20
1674 2717 2.114616 AGAGTGGTGCAGATAAGAGGG 58.885 52.381 0.00 0.00 0.00 4.30
1675 2718 4.211125 TCTAGAGTGGTGCAGATAAGAGG 58.789 47.826 0.00 0.00 0.00 3.69
1676 2719 5.534278 TGATCTAGAGTGGTGCAGATAAGAG 59.466 44.000 0.00 0.00 0.00 2.85
1677 2720 5.300539 GTGATCTAGAGTGGTGCAGATAAGA 59.699 44.000 0.00 0.00 0.00 2.10
1678 2721 5.527951 GTGATCTAGAGTGGTGCAGATAAG 58.472 45.833 0.00 0.00 0.00 1.73
1679 2722 4.036852 CGTGATCTAGAGTGGTGCAGATAA 59.963 45.833 0.00 0.00 0.00 1.75
1680 2723 3.565902 CGTGATCTAGAGTGGTGCAGATA 59.434 47.826 0.00 0.00 0.00 1.98
1681 2724 2.360483 CGTGATCTAGAGTGGTGCAGAT 59.640 50.000 0.00 0.00 0.00 2.90
1682 2725 1.745653 CGTGATCTAGAGTGGTGCAGA 59.254 52.381 0.00 0.00 0.00 4.26
1683 2726 1.474478 ACGTGATCTAGAGTGGTGCAG 59.526 52.381 0.00 0.00 0.00 4.41
1684 2727 1.545841 ACGTGATCTAGAGTGGTGCA 58.454 50.000 0.00 0.00 0.00 4.57
1685 2728 2.094700 TGAACGTGATCTAGAGTGGTGC 60.095 50.000 0.00 0.00 0.00 5.01
1686 2729 3.850122 TGAACGTGATCTAGAGTGGTG 57.150 47.619 0.00 0.00 0.00 4.17
1687 2730 3.381908 GGATGAACGTGATCTAGAGTGGT 59.618 47.826 0.00 0.00 0.00 4.16
1688 2731 3.381590 TGGATGAACGTGATCTAGAGTGG 59.618 47.826 0.00 0.00 0.00 4.00
1689 2732 4.639135 TGGATGAACGTGATCTAGAGTG 57.361 45.455 0.00 0.00 0.00 3.51
1690 2733 5.452496 CCAATGGATGAACGTGATCTAGAGT 60.452 44.000 0.00 0.00 0.00 3.24
1691 2734 4.987285 CCAATGGATGAACGTGATCTAGAG 59.013 45.833 0.00 0.00 0.00 2.43
1692 2735 4.740634 GCCAATGGATGAACGTGATCTAGA 60.741 45.833 2.05 0.00 0.00 2.43
1693 2736 3.496130 GCCAATGGATGAACGTGATCTAG 59.504 47.826 2.05 0.00 0.00 2.43
1694 2737 3.466836 GCCAATGGATGAACGTGATCTA 58.533 45.455 2.05 2.80 0.00 1.98
1695 2738 2.292267 GCCAATGGATGAACGTGATCT 58.708 47.619 2.05 0.00 0.00 2.75
1696 2739 1.003545 CGCCAATGGATGAACGTGATC 60.004 52.381 2.05 0.00 0.00 2.92
1697 2740 1.016627 CGCCAATGGATGAACGTGAT 58.983 50.000 2.05 0.00 0.00 3.06
1698 2741 0.036858 TCGCCAATGGATGAACGTGA 60.037 50.000 2.05 0.00 32.39 4.35
1699 2742 0.374758 CTCGCCAATGGATGAACGTG 59.625 55.000 2.05 0.00 32.39 4.49
1700 2743 0.249120 TCTCGCCAATGGATGAACGT 59.751 50.000 2.05 0.00 32.39 3.99
1701 2744 1.586422 ATCTCGCCAATGGATGAACG 58.414 50.000 2.05 0.00 0.00 3.95
1702 2745 2.033801 CCAATCTCGCCAATGGATGAAC 59.966 50.000 2.05 0.00 34.82 3.18
1703 2746 2.300433 CCAATCTCGCCAATGGATGAA 58.700 47.619 2.05 0.00 34.82 2.57
1704 2747 1.971481 CCAATCTCGCCAATGGATGA 58.029 50.000 2.05 0.00 34.82 2.92
1705 2748 0.313043 GCCAATCTCGCCAATGGATG 59.687 55.000 2.05 0.00 34.82 3.51
1706 2749 1.168407 CGCCAATCTCGCCAATGGAT 61.168 55.000 2.05 0.00 34.82 3.41
1707 2750 1.819208 CGCCAATCTCGCCAATGGA 60.819 57.895 2.05 0.00 34.82 3.41
1708 2751 2.717485 CGCCAATCTCGCCAATGG 59.283 61.111 0.00 0.00 36.00 3.16
1709 2752 2.717485 CCGCCAATCTCGCCAATG 59.283 61.111 0.00 0.00 0.00 2.82
1710 2753 3.211963 GCCGCCAATCTCGCCAAT 61.212 61.111 0.00 0.00 0.00 3.16
1724 2767 3.997064 CTCTCCTTCTGCACCGCCG 62.997 68.421 0.00 0.00 0.00 6.46
1725 2768 2.125350 CTCTCCTTCTGCACCGCC 60.125 66.667 0.00 0.00 0.00 6.13
1726 2769 2.817396 GCTCTCCTTCTGCACCGC 60.817 66.667 0.00 0.00 0.00 5.68
1727 2770 1.153667 GAGCTCTCCTTCTGCACCG 60.154 63.158 6.43 0.00 0.00 4.94
1728 2771 1.220477 GGAGCTCTCCTTCTGCACC 59.780 63.158 14.64 0.00 46.16 5.01
1729 2772 4.930592 GGAGCTCTCCTTCTGCAC 57.069 61.111 14.64 0.00 46.16 4.57
1743 2786 2.830704 GAACCGGTGGTGCGTAGGAG 62.831 65.000 8.52 0.00 35.34 3.69
1744 2787 2.918802 AACCGGTGGTGCGTAGGA 60.919 61.111 8.52 0.00 35.34 2.94
1745 2788 2.433664 GAACCGGTGGTGCGTAGG 60.434 66.667 8.52 0.00 35.34 3.18
1746 2789 0.601841 AAAGAACCGGTGGTGCGTAG 60.602 55.000 8.52 0.00 36.08 3.51
1747 2790 0.678395 TAAAGAACCGGTGGTGCGTA 59.322 50.000 8.52 0.00 36.08 4.42
1748 2791 0.881600 GTAAAGAACCGGTGGTGCGT 60.882 55.000 8.52 0.00 36.08 5.24
1749 2792 0.881159 TGTAAAGAACCGGTGGTGCG 60.881 55.000 8.52 0.00 36.08 5.34
1750 2793 0.872388 CTGTAAAGAACCGGTGGTGC 59.128 55.000 8.52 0.00 35.34 5.01
1751 2794 0.872388 GCTGTAAAGAACCGGTGGTG 59.128 55.000 8.52 0.00 35.34 4.17
1752 2795 0.250597 GGCTGTAAAGAACCGGTGGT 60.251 55.000 8.52 0.00 37.65 4.16
1753 2796 0.036306 AGGCTGTAAAGAACCGGTGG 59.964 55.000 8.52 0.00 0.00 4.61
1754 2797 2.754946 TAGGCTGTAAAGAACCGGTG 57.245 50.000 8.52 0.00 0.00 4.94
1755 2798 2.570302 ACATAGGCTGTAAAGAACCGGT 59.430 45.455 0.00 0.00 35.91 5.28
1756 2799 2.936498 CACATAGGCTGTAAAGAACCGG 59.064 50.000 0.00 0.00 35.91 5.28
1757 2800 3.857052 TCACATAGGCTGTAAAGAACCG 58.143 45.455 0.00 0.00 35.91 4.44
1758 2801 6.555315 CAATTCACATAGGCTGTAAAGAACC 58.445 40.000 0.00 0.00 35.91 3.62
1759 2802 6.030228 GCAATTCACATAGGCTGTAAAGAAC 58.970 40.000 0.00 0.00 35.91 3.01
1760 2803 5.709631 TGCAATTCACATAGGCTGTAAAGAA 59.290 36.000 0.00 0.00 35.91 2.52
1761 2804 5.252547 TGCAATTCACATAGGCTGTAAAGA 58.747 37.500 0.00 0.00 35.91 2.52
1762 2805 5.565592 TGCAATTCACATAGGCTGTAAAG 57.434 39.130 0.00 0.00 35.91 1.85
1763 2806 4.142403 GCTGCAATTCACATAGGCTGTAAA 60.142 41.667 0.00 0.00 35.91 2.01
1764 2807 3.378112 GCTGCAATTCACATAGGCTGTAA 59.622 43.478 0.00 0.00 35.91 2.41
1765 2808 2.945008 GCTGCAATTCACATAGGCTGTA 59.055 45.455 0.00 0.00 35.91 2.74
1766 2809 1.747355 GCTGCAATTCACATAGGCTGT 59.253 47.619 0.00 0.00 39.20 4.40
1767 2810 1.746787 TGCTGCAATTCACATAGGCTG 59.253 47.619 0.00 0.00 0.00 4.85
1768 2811 2.022195 CTGCTGCAATTCACATAGGCT 58.978 47.619 3.02 0.00 0.00 4.58
1769 2812 1.535437 GCTGCTGCAATTCACATAGGC 60.535 52.381 11.11 0.00 39.41 3.93
1770 2813 1.268386 CGCTGCTGCAATTCACATAGG 60.268 52.381 16.29 0.00 39.64 2.57
1771 2814 1.858798 GCGCTGCTGCAATTCACATAG 60.859 52.381 16.29 0.00 39.64 2.23
1772 2815 0.099259 GCGCTGCTGCAATTCACATA 59.901 50.000 16.29 0.00 39.64 2.29
1773 2816 1.153901 GCGCTGCTGCAATTCACAT 60.154 52.632 16.29 0.00 39.64 3.21
1774 2817 2.256158 GCGCTGCTGCAATTCACA 59.744 55.556 16.29 0.00 39.64 3.58
1775 2818 2.505557 GGCGCTGCTGCAATTCAC 60.506 61.111 16.29 0.00 39.64 3.18
1776 2819 2.984718 TGGCGCTGCTGCAATTCA 60.985 55.556 16.29 4.93 39.64 2.57
1777 2820 2.001361 ATCTGGCGCTGCTGCAATTC 62.001 55.000 16.29 2.41 39.64 2.17
1778 2821 2.001361 GATCTGGCGCTGCTGCAATT 62.001 55.000 16.29 0.00 39.64 2.32
1779 2822 2.439701 ATCTGGCGCTGCTGCAAT 60.440 55.556 16.29 5.89 39.64 3.56
1780 2823 3.129502 GATCTGGCGCTGCTGCAA 61.130 61.111 16.29 6.18 39.64 4.08
1783 2826 3.260483 GTCGATCTGGCGCTGCTG 61.260 66.667 7.64 0.00 0.00 4.41
1784 2827 4.862092 CGTCGATCTGGCGCTGCT 62.862 66.667 7.64 0.00 0.00 4.24
1786 2829 2.507102 AACGTCGATCTGGCGCTG 60.507 61.111 7.64 0.11 0.00 5.18
1787 2830 2.507102 CAACGTCGATCTGGCGCT 60.507 61.111 7.64 0.00 0.00 5.92
1788 2831 2.380410 AACAACGTCGATCTGGCGC 61.380 57.895 0.00 0.00 0.00 6.53
1789 2832 1.282248 ACAACAACGTCGATCTGGCG 61.282 55.000 0.00 9.43 0.00 5.69
1790 2833 0.865769 AACAACAACGTCGATCTGGC 59.134 50.000 0.00 0.00 0.00 4.85
1791 2834 1.194547 CCAACAACAACGTCGATCTGG 59.805 52.381 0.00 0.00 0.00 3.86
1792 2835 1.864711 ACCAACAACAACGTCGATCTG 59.135 47.619 0.00 0.00 0.00 2.90
1793 2836 1.864711 CACCAACAACAACGTCGATCT 59.135 47.619 0.00 0.00 0.00 2.75
1794 2837 1.595794 ACACCAACAACAACGTCGATC 59.404 47.619 0.00 0.00 0.00 3.69
1795 2838 1.658994 ACACCAACAACAACGTCGAT 58.341 45.000 0.00 0.00 0.00 3.59
1796 2839 2.290531 TACACCAACAACAACGTCGA 57.709 45.000 0.00 0.00 0.00 4.20
1797 2840 2.540516 TCATACACCAACAACAACGTCG 59.459 45.455 0.00 0.00 0.00 5.12
1798 2841 3.602946 CGTCATACACCAACAACAACGTC 60.603 47.826 0.00 0.00 0.00 4.34
1799 2842 2.285756 CGTCATACACCAACAACAACGT 59.714 45.455 0.00 0.00 0.00 3.99
1800 2843 2.898746 CGTCATACACCAACAACAACG 58.101 47.619 0.00 0.00 0.00 4.10
1801 2844 2.032302 TGCGTCATACACCAACAACAAC 59.968 45.455 0.00 0.00 0.00 3.32
1802 2845 2.289565 TGCGTCATACACCAACAACAA 58.710 42.857 0.00 0.00 0.00 2.83
1803 2846 1.954927 TGCGTCATACACCAACAACA 58.045 45.000 0.00 0.00 0.00 3.33
1804 2847 3.552604 AATGCGTCATACACCAACAAC 57.447 42.857 0.00 0.00 0.00 3.32
1805 2848 3.316588 ACAAATGCGTCATACACCAACAA 59.683 39.130 0.00 0.00 0.00 2.83
1806 2849 2.881513 ACAAATGCGTCATACACCAACA 59.118 40.909 0.00 0.00 0.00 3.33
1807 2850 3.188460 AGACAAATGCGTCATACACCAAC 59.812 43.478 0.00 0.00 38.43 3.77
1808 2851 3.188254 CAGACAAATGCGTCATACACCAA 59.812 43.478 0.00 0.00 38.43 3.67
1809 2852 2.741517 CAGACAAATGCGTCATACACCA 59.258 45.455 0.00 0.00 38.43 4.17
1810 2853 2.476185 GCAGACAAATGCGTCATACACC 60.476 50.000 0.00 0.00 38.43 4.16
1811 2854 2.774007 GCAGACAAATGCGTCATACAC 58.226 47.619 0.00 0.00 38.43 2.90
1820 2863 4.847255 GGTGACGCAGACAAATGC 57.153 55.556 0.00 0.00 42.95 3.56
1835 2878 2.578586 ATAGTACGAGCACCCCCGGT 62.579 60.000 0.00 0.00 35.62 5.28
1836 2879 0.538057 TATAGTACGAGCACCCCCGG 60.538 60.000 0.00 0.00 0.00 5.73
1837 2880 0.879765 CTATAGTACGAGCACCCCCG 59.120 60.000 0.00 0.00 0.00 5.73
1838 2881 1.254954 CCTATAGTACGAGCACCCCC 58.745 60.000 0.00 0.00 0.00 5.40
1839 2882 0.602060 GCCTATAGTACGAGCACCCC 59.398 60.000 0.00 0.00 0.00 4.95
1840 2883 1.269998 CAGCCTATAGTACGAGCACCC 59.730 57.143 0.00 0.00 0.00 4.61
1841 2884 1.955080 ACAGCCTATAGTACGAGCACC 59.045 52.381 0.00 0.00 0.00 5.01
1842 2885 2.030981 GGACAGCCTATAGTACGAGCAC 60.031 54.545 0.00 0.00 0.00 4.40
1843 2886 2.228059 GGACAGCCTATAGTACGAGCA 58.772 52.381 0.00 0.00 0.00 4.26
1844 2887 2.228059 TGGACAGCCTATAGTACGAGC 58.772 52.381 0.00 0.00 34.31 5.03
1845 2888 4.321304 CCATTGGACAGCCTATAGTACGAG 60.321 50.000 0.00 0.00 34.31 4.18
1846 2889 3.572682 CCATTGGACAGCCTATAGTACGA 59.427 47.826 0.00 0.00 34.31 3.43
1847 2890 3.321111 ACCATTGGACAGCCTATAGTACG 59.679 47.826 10.37 0.00 34.31 3.67
1848 2891 4.957684 ACCATTGGACAGCCTATAGTAC 57.042 45.455 10.37 0.00 34.31 2.73
1849 2892 6.082031 ACATACCATTGGACAGCCTATAGTA 58.918 40.000 10.37 0.00 31.07 1.82
1850 2893 4.907875 ACATACCATTGGACAGCCTATAGT 59.092 41.667 10.37 0.00 34.31 2.12
1851 2894 5.482908 GACATACCATTGGACAGCCTATAG 58.517 45.833 10.37 0.00 34.31 1.31
1852 2895 4.021456 CGACATACCATTGGACAGCCTATA 60.021 45.833 10.37 0.00 34.31 1.31
1853 2896 3.244215 CGACATACCATTGGACAGCCTAT 60.244 47.826 10.37 0.00 34.31 2.57
1854 2897 2.102420 CGACATACCATTGGACAGCCTA 59.898 50.000 10.37 0.00 34.31 3.93
1855 2898 1.134401 CGACATACCATTGGACAGCCT 60.134 52.381 10.37 0.00 34.31 4.58
1856 2899 1.299541 CGACATACCATTGGACAGCC 58.700 55.000 10.37 0.00 0.00 4.85
1857 2900 1.299541 CCGACATACCATTGGACAGC 58.700 55.000 10.37 0.00 0.00 4.40
1858 2901 2.279741 CACCGACATACCATTGGACAG 58.720 52.381 10.37 0.64 0.00 3.51
1859 2902 1.677518 GCACCGACATACCATTGGACA 60.678 52.381 10.37 0.00 0.00 4.02
1860 2903 1.014352 GCACCGACATACCATTGGAC 58.986 55.000 10.37 0.00 0.00 4.02
1861 2904 0.107410 GGCACCGACATACCATTGGA 60.107 55.000 10.37 0.00 0.00 3.53
1862 2905 1.436195 CGGCACCGACATACCATTGG 61.436 60.000 2.01 0.00 42.83 3.16
1863 2906 1.436195 CCGGCACCGACATACCATTG 61.436 60.000 11.42 0.00 42.83 2.82
1864 2907 1.153249 CCGGCACCGACATACCATT 60.153 57.895 11.42 0.00 42.83 3.16
1865 2908 2.028125 CTCCGGCACCGACATACCAT 62.028 60.000 11.42 0.00 42.83 3.55
1866 2909 2.680707 TCCGGCACCGACATACCA 60.681 61.111 11.42 0.00 42.83 3.25
1867 2910 2.106332 CTCCGGCACCGACATACC 59.894 66.667 11.42 0.00 42.83 2.73
1868 2911 2.106332 CCTCCGGCACCGACATAC 59.894 66.667 11.42 0.00 42.83 2.39
1869 2912 2.043752 TCCTCCGGCACCGACATA 60.044 61.111 11.42 0.00 42.83 2.29
1870 2913 3.771160 GTCCTCCGGCACCGACAT 61.771 66.667 11.42 0.00 42.83 3.06
1873 2916 4.720902 TACGTCCTCCGGCACCGA 62.721 66.667 11.42 0.00 42.83 4.69
1874 2917 4.487412 GTACGTCCTCCGGCACCG 62.487 72.222 1.02 1.02 42.24 4.94
1875 2918 1.722636 CTAGTACGTCCTCCGGCACC 61.723 65.000 0.00 0.00 42.24 5.01
1876 2919 1.722636 CCTAGTACGTCCTCCGGCAC 61.723 65.000 0.00 0.00 42.24 5.01
1877 2920 1.452651 CCTAGTACGTCCTCCGGCA 60.453 63.158 0.00 0.00 42.24 5.69
1878 2921 2.843352 GCCTAGTACGTCCTCCGGC 61.843 68.421 0.00 5.78 42.24 6.13
1879 2922 2.192187 GGCCTAGTACGTCCTCCGG 61.192 68.421 0.00 0.00 42.24 5.14
1880 2923 0.107456 TAGGCCTAGTACGTCCTCCG 59.893 60.000 8.91 0.00 44.03 4.63
1881 2924 1.545204 CCTAGGCCTAGTACGTCCTCC 60.545 61.905 33.00 0.00 0.00 4.30
1882 2925 1.419387 TCCTAGGCCTAGTACGTCCTC 59.581 57.143 33.00 0.00 0.00 3.71
1883 2926 1.420891 CTCCTAGGCCTAGTACGTCCT 59.579 57.143 33.00 0.00 0.00 3.85
1884 2927 1.142667 ACTCCTAGGCCTAGTACGTCC 59.857 57.143 33.00 0.00 0.00 4.79
1885 2928 2.220313 CACTCCTAGGCCTAGTACGTC 58.780 57.143 33.00 0.00 0.00 4.34
1886 2929 1.133853 CCACTCCTAGGCCTAGTACGT 60.134 57.143 33.00 23.87 0.00 3.57
1887 2930 1.133853 ACCACTCCTAGGCCTAGTACG 60.134 57.143 33.00 23.31 0.00 3.67
1888 2931 2.308690 CACCACTCCTAGGCCTAGTAC 58.691 57.143 33.00 0.00 0.00 2.73
1889 2932 1.928077 ACACCACTCCTAGGCCTAGTA 59.072 52.381 33.00 20.72 0.00 1.82
1890 2933 0.711184 ACACCACTCCTAGGCCTAGT 59.289 55.000 33.00 18.93 0.00 2.57
1891 2934 1.115467 CACACCACTCCTAGGCCTAG 58.885 60.000 30.05 30.05 0.00 3.02
1892 2935 0.976073 GCACACCACTCCTAGGCCTA 60.976 60.000 13.09 13.09 0.00 3.93
1893 2936 2.294078 GCACACCACTCCTAGGCCT 61.294 63.158 11.78 11.78 0.00 5.19
1894 2937 2.269241 GCACACCACTCCTAGGCC 59.731 66.667 2.96 0.00 0.00 5.19
1895 2938 2.125512 CGCACACCACTCCTAGGC 60.126 66.667 2.96 0.00 0.00 3.93
1896 2939 2.579201 CCGCACACCACTCCTAGG 59.421 66.667 0.82 0.82 0.00 3.02
1897 2940 2.283529 ACCCGCACACCACTCCTAG 61.284 63.158 0.00 0.00 0.00 3.02
1898 2941 2.203728 ACCCGCACACCACTCCTA 60.204 61.111 0.00 0.00 0.00 2.94
1899 2942 3.941188 CACCCGCACACCACTCCT 61.941 66.667 0.00 0.00 0.00 3.69
1901 2944 4.626081 AGCACCCGCACACCACTC 62.626 66.667 0.00 0.00 42.27 3.51
1902 2945 4.935495 CAGCACCCGCACACCACT 62.935 66.667 0.00 0.00 42.27 4.00
1912 2955 1.007387 CAAAAACCGAGCAGCACCC 60.007 57.895 0.00 0.00 0.00 4.61
1924 2967 3.733727 CCAGCATACGGAACAACAAAAAC 59.266 43.478 0.00 0.00 0.00 2.43
1929 2972 0.958382 GGCCAGCATACGGAACAACA 60.958 55.000 0.00 0.00 0.00 3.33
2017 3061 3.723235 CTAGCACTCGCCGCACCAT 62.723 63.158 0.00 0.00 39.83 3.55
2054 3098 0.686769 GACTCCCCCGTGTCATACCT 60.687 60.000 0.00 0.00 33.57 3.08
2070 3114 1.483827 AGCATGTGTGATCATCCGACT 59.516 47.619 0.00 0.00 0.00 4.18
2094 3138 4.753662 TAGCCTGACCGCCGGAGT 62.754 66.667 11.71 0.00 0.00 3.85
2138 3182 6.106673 AGATCAACTATTGGGTAACTGAACG 58.893 40.000 0.00 0.00 0.00 3.95
2163 3207 4.141251 ACACTGACCAACCAATTACCTCTT 60.141 41.667 0.00 0.00 0.00 2.85
2254 5632 6.402658 GGACTAAAGAGAACTACAATGCAAGC 60.403 42.308 0.00 0.00 0.00 4.01
2327 5705 1.967319 TAATTCTTCCATGGAGCGGC 58.033 50.000 15.53 0.00 0.00 6.53
2344 5722 6.451393 ACAAAACAGAAAGCAACAGTGTTAA 58.549 32.000 8.49 0.00 31.19 2.01
2420 5798 3.120451 GCTTCTTTCTCGTGTTTCTCTCG 59.880 47.826 0.00 0.00 34.85 4.04
2451 5829 8.459521 TTTGATGTTTTCGCAATATAAAGTGG 57.540 30.769 0.00 0.00 0.00 4.00
2464 5844 5.454232 ACGTTACAAGCTTTTGATGTTTTCG 59.546 36.000 0.00 1.23 0.00 3.46
2486 5866 7.370044 TCATTTTGTTTCGTGAATACAAACG 57.630 32.000 15.83 12.46 40.36 3.60
2699 6081 2.095567 CACTGACAACAGCTAACATGGC 60.096 50.000 0.00 0.00 46.95 4.40
2790 6172 9.226345 GCACAACATAGCTTATCAAATAGAAAC 57.774 33.333 0.00 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.