Multiple sequence alignment - TraesCS4A01G209000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G209000 chr4A 100.000 5001 0 0 1 5001 502031925 502026925 0.000000e+00 9236
1 TraesCS4A01G209000 chr4B 93.097 4737 225 47 305 5001 126601081 126596407 0.000000e+00 6842
2 TraesCS4A01G209000 chr4D 95.488 2061 63 13 2944 5001 89538560 89536527 0.000000e+00 3264
3 TraesCS4A01G209000 chr4D 90.877 1699 95 27 299 1971 89541609 89539945 0.000000e+00 2224
4 TraesCS4A01G209000 chr4D 86.621 725 64 17 2226 2940 89539360 89538659 0.000000e+00 771
5 TraesCS4A01G209000 chr4D 90.594 202 18 1 1988 2189 89539561 89539361 2.970000e-67 267
6 TraesCS4A01G209000 chr4D 85.393 178 14 7 86 251 89541776 89541599 1.850000e-39 174
7 TraesCS4A01G209000 chr1B 72.659 801 159 43 3246 4004 491983446 491982664 1.410000e-50 211
8 TraesCS4A01G209000 chr1D 72.869 704 151 32 3333 4004 367429870 367429175 6.560000e-49 206
9 TraesCS4A01G209000 chr3A 78.638 323 57 11 3681 4000 627864875 627865188 2.360000e-48 204
10 TraesCS4A01G209000 chr7D 88.281 128 15 0 3681 3808 412885765 412885638 2.410000e-33 154
11 TraesCS4A01G209000 chr7B 87.500 128 16 0 3681 3808 427302946 427302819 1.120000e-31 148
12 TraesCS4A01G209000 chr1A 72.840 486 112 14 3333 3805 466928060 466927582 1.120000e-31 148
13 TraesCS4A01G209000 chr7A 85.938 128 18 0 3681 3808 474296328 474296201 2.430000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G209000 chr4A 502026925 502031925 5000 True 9236 9236 100.0000 1 5001 1 chr4A.!!$R1 5000
1 TraesCS4A01G209000 chr4B 126596407 126601081 4674 True 6842 6842 93.0970 305 5001 1 chr4B.!!$R1 4696
2 TraesCS4A01G209000 chr4D 89536527 89541776 5249 True 1340 3264 89.7946 86 5001 5 chr4D.!!$R1 4915
3 TraesCS4A01G209000 chr1B 491982664 491983446 782 True 211 211 72.6590 3246 4004 1 chr1B.!!$R1 758
4 TraesCS4A01G209000 chr1D 367429175 367429870 695 True 206 206 72.8690 3333 4004 1 chr1D.!!$R1 671


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
163 164 0.106521 TTTTTGCCCCAAAGCAGAGC 59.893 50.000 0.00 0.0 45.13 4.09 F
164 165 0.760189 TTTTGCCCCAAAGCAGAGCT 60.760 50.000 0.00 0.0 45.13 4.09 F
1155 1185 1.209019 CCTGTAATCCAGAGCAGCTGT 59.791 52.381 16.64 0.0 44.49 4.40 F
1828 1872 0.685097 ATGCGTGTACTGGAGGTGTT 59.315 50.000 0.00 0.0 0.00 3.32 F
3610 4129 0.533978 TGCGTTTTAGCAGTGCCAGA 60.534 50.000 12.58 0.0 42.92 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1071 1101 0.685131 TGCCATTGCCCAGAATCCTG 60.685 55.0 0.00 0.0 36.38 3.86 R
1384 1414 0.966875 ATTGCCAGATGCCAGCGAAA 60.967 50.0 0.00 0.0 40.16 3.46 R
2337 2750 0.244178 GGACGTCTGTTGGAGTCTCC 59.756 60.0 16.46 12.4 36.96 3.71 R
3678 4197 0.250124 AATCAACGGCGTGTCCTTCA 60.250 50.0 15.70 0.0 0.00 3.02 R
4584 5139 0.036388 TCGACCATGTCCCTTTCAGC 60.036 55.0 0.00 0.0 0.00 4.26 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.698625 AGGGGGCGTCTCCGAGTT 62.699 66.667 0.00 0.00 35.63 3.01
23 24 4.452733 GGGGGCGTCTCCGAGTTG 62.453 72.222 0.00 0.00 35.63 3.16
26 27 4.070552 GGCGTCTCCGAGTTGCCT 62.071 66.667 19.88 0.00 42.44 4.75
27 28 2.811317 GCGTCTCCGAGTTGCCTG 60.811 66.667 0.00 0.00 35.63 4.85
28 29 2.811317 CGTCTCCGAGTTGCCTGC 60.811 66.667 0.00 0.00 35.63 4.85
29 30 2.435059 GTCTCCGAGTTGCCTGCC 60.435 66.667 0.00 0.00 0.00 4.85
30 31 2.604686 TCTCCGAGTTGCCTGCCT 60.605 61.111 0.00 0.00 0.00 4.75
31 32 2.125350 CTCCGAGTTGCCTGCCTC 60.125 66.667 0.00 0.00 0.00 4.70
32 33 2.922503 TCCGAGTTGCCTGCCTCA 60.923 61.111 0.00 0.00 0.00 3.86
33 34 2.249413 CTCCGAGTTGCCTGCCTCAT 62.249 60.000 0.00 0.00 0.00 2.90
34 35 2.110967 CCGAGTTGCCTGCCTCATG 61.111 63.158 0.00 0.00 0.00 3.07
35 36 1.078918 CGAGTTGCCTGCCTCATGA 60.079 57.895 0.00 0.00 0.00 3.07
36 37 1.364626 CGAGTTGCCTGCCTCATGAC 61.365 60.000 0.00 0.00 0.00 3.06
37 38 1.001641 AGTTGCCTGCCTCATGACC 60.002 57.895 0.00 0.00 0.00 4.02
38 39 1.001641 GTTGCCTGCCTCATGACCT 60.002 57.895 0.00 0.00 0.00 3.85
39 40 0.253044 GTTGCCTGCCTCATGACCTA 59.747 55.000 0.00 0.00 0.00 3.08
40 41 0.991146 TTGCCTGCCTCATGACCTAA 59.009 50.000 0.00 0.00 0.00 2.69
41 42 1.216064 TGCCTGCCTCATGACCTAAT 58.784 50.000 0.00 0.00 0.00 1.73
42 43 1.565759 TGCCTGCCTCATGACCTAATT 59.434 47.619 0.00 0.00 0.00 1.40
43 44 2.225467 GCCTGCCTCATGACCTAATTC 58.775 52.381 0.00 0.00 0.00 2.17
44 45 2.158696 GCCTGCCTCATGACCTAATTCT 60.159 50.000 0.00 0.00 0.00 2.40
45 46 3.737850 CCTGCCTCATGACCTAATTCTC 58.262 50.000 0.00 0.00 0.00 2.87
46 47 3.135348 CCTGCCTCATGACCTAATTCTCA 59.865 47.826 0.00 0.00 0.00 3.27
47 48 4.202440 CCTGCCTCATGACCTAATTCTCAT 60.202 45.833 0.00 0.00 0.00 2.90
48 49 4.711399 TGCCTCATGACCTAATTCTCATG 58.289 43.478 11.77 11.77 43.53 3.07
49 50 4.070716 GCCTCATGACCTAATTCTCATGG 58.929 47.826 15.54 9.50 42.75 3.66
50 51 4.202398 GCCTCATGACCTAATTCTCATGGA 60.202 45.833 15.54 6.69 42.75 3.41
51 52 5.688500 GCCTCATGACCTAATTCTCATGGAA 60.689 44.000 15.54 0.00 42.75 3.53
52 53 6.540995 CCTCATGACCTAATTCTCATGGAAT 58.459 40.000 15.54 0.00 45.61 3.01
63 64 6.588719 ATTCTCATGGAATTTTGGTCGAAA 57.411 33.333 0.00 0.00 41.42 3.46
64 65 5.627499 TCTCATGGAATTTTGGTCGAAAG 57.373 39.130 0.00 0.00 0.00 2.62
65 66 5.312895 TCTCATGGAATTTTGGTCGAAAGA 58.687 37.500 0.00 0.00 38.16 2.52
66 67 5.767665 TCTCATGGAATTTTGGTCGAAAGAA 59.232 36.000 0.00 0.00 45.01 2.52
67 68 6.012658 TCATGGAATTTTGGTCGAAAGAAG 57.987 37.500 0.00 0.00 45.01 2.85
68 69 4.846779 TGGAATTTTGGTCGAAAGAAGG 57.153 40.909 0.00 0.00 45.01 3.46
69 70 4.465886 TGGAATTTTGGTCGAAAGAAGGA 58.534 39.130 0.00 0.00 45.01 3.36
70 71 4.890581 TGGAATTTTGGTCGAAAGAAGGAA 59.109 37.500 0.00 0.00 45.01 3.36
71 72 5.220381 GGAATTTTGGTCGAAAGAAGGAAC 58.780 41.667 0.00 0.00 45.01 3.62
72 73 5.221165 GGAATTTTGGTCGAAAGAAGGAACA 60.221 40.000 0.00 0.00 45.01 3.18
73 74 6.405278 AATTTTGGTCGAAAGAAGGAACAT 57.595 33.333 0.00 0.00 45.01 2.71
74 75 4.829064 TTTGGTCGAAAGAAGGAACATG 57.171 40.909 0.00 0.00 45.01 3.21
75 76 2.151202 TGGTCGAAAGAAGGAACATGC 58.849 47.619 0.00 0.00 45.01 4.06
76 77 2.224523 TGGTCGAAAGAAGGAACATGCT 60.225 45.455 0.00 0.00 45.01 3.79
77 78 3.007506 TGGTCGAAAGAAGGAACATGCTA 59.992 43.478 0.00 0.00 45.01 3.49
78 79 3.371285 GGTCGAAAGAAGGAACATGCTAC 59.629 47.826 0.00 0.00 45.01 3.58
79 80 4.246458 GTCGAAAGAAGGAACATGCTACT 58.754 43.478 0.00 0.00 45.01 2.57
80 81 5.408356 GTCGAAAGAAGGAACATGCTACTA 58.592 41.667 0.00 0.00 45.01 1.82
81 82 5.517054 GTCGAAAGAAGGAACATGCTACTAG 59.483 44.000 0.00 0.00 45.01 2.57
82 83 4.268884 CGAAAGAAGGAACATGCTACTAGC 59.731 45.833 0.61 0.61 42.82 3.42
83 84 5.423886 GAAAGAAGGAACATGCTACTAGCT 58.576 41.667 9.49 0.00 42.97 3.32
84 85 5.428184 AAGAAGGAACATGCTACTAGCTT 57.572 39.130 9.49 0.17 42.97 3.74
114 115 7.839705 TCTCGGGGCTATTATTCTACATCTAAT 59.160 37.037 0.00 0.00 0.00 1.73
135 136 4.857871 TTCGGTGAAAGATAGCATTTCG 57.142 40.909 0.00 0.00 39.10 3.46
137 138 4.250464 TCGGTGAAAGATAGCATTTCGTT 58.750 39.130 0.00 0.00 39.10 3.85
163 164 0.106521 TTTTTGCCCCAAAGCAGAGC 59.893 50.000 0.00 0.00 45.13 4.09
164 165 0.760189 TTTTGCCCCAAAGCAGAGCT 60.760 50.000 0.00 0.00 45.13 4.09
170 183 2.027385 CCCCAAAGCAGAGCTATTTCC 58.973 52.381 0.00 0.00 38.25 3.13
181 194 5.633182 GCAGAGCTATTTCCTTAGATCTTCG 59.367 44.000 0.00 0.00 41.01 3.79
221 234 7.512058 AGAGTCAGTTATCATCTATGGGTTGAT 59.488 37.037 0.00 0.00 37.85 2.57
236 249 4.525912 GGTTGATTTATGCATCATCCCC 57.474 45.455 0.19 5.76 37.18 4.81
238 251 4.590222 GGTTGATTTATGCATCATCCCCTT 59.410 41.667 0.19 0.00 37.18 3.95
240 253 6.408434 GGTTGATTTATGCATCATCCCCTTTT 60.408 38.462 0.19 0.00 37.18 2.27
241 254 7.201992 GGTTGATTTATGCATCATCCCCTTTTA 60.202 37.037 0.19 0.00 37.18 1.52
242 255 8.370182 GTTGATTTATGCATCATCCCCTTTTAT 58.630 33.333 0.19 0.00 33.07 1.40
243 256 9.599056 TTGATTTATGCATCATCCCCTTTTATA 57.401 29.630 0.19 0.00 33.07 0.98
244 257 9.772605 TGATTTATGCATCATCCCCTTTTATAT 57.227 29.630 0.19 0.00 0.00 0.86
377 390 3.266541 TGCGAAAGTTAGCATGTTGTG 57.733 42.857 2.25 0.00 38.59 3.33
385 404 2.418368 TAGCATGTTGTGGTGGGATC 57.582 50.000 0.00 0.00 39.30 3.36
401 420 3.775866 TGGGATCCCAACGAAACTATGTA 59.224 43.478 32.09 1.77 44.12 2.29
455 475 1.668419 ACCGAAATGCTCATACTGCC 58.332 50.000 0.00 0.00 0.00 4.85
480 500 7.648510 CCGGAAATGTACATCTTTACTCTCTAC 59.351 40.741 9.23 0.00 0.00 2.59
577 604 5.980698 ATTCTTTGATAGTCATGCGAGTG 57.019 39.130 0.00 0.00 0.00 3.51
627 654 2.917343 GTTTTGAAAGAAGCGGCTATGC 59.083 45.455 1.35 0.00 0.00 3.14
644 671 3.864789 ATGCCCTATAAGTGTTCCTGG 57.135 47.619 0.00 0.00 0.00 4.45
649 676 3.070302 CCCTATAAGTGTTCCTGGAGAGC 59.930 52.174 0.00 0.00 0.00 4.09
747 776 4.506654 GGAATCACATGAGCAATCAAATGC 59.493 41.667 0.00 0.00 46.78 3.56
883 913 7.538678 CACAATATTTTGTCTTGCAGGTTCTAC 59.461 37.037 0.00 0.00 44.24 2.59
889 919 4.628074 TGTCTTGCAGGTTCTACTGTTAC 58.372 43.478 0.00 0.00 40.59 2.50
938 968 6.539826 CACTTCTATTGGCATGATAGTGTTCA 59.460 38.462 0.00 0.00 0.00 3.18
1084 1114 1.288188 TGACATCAGGATTCTGGGCA 58.712 50.000 0.00 0.00 41.23 5.36
1155 1185 1.209019 CCTGTAATCCAGAGCAGCTGT 59.791 52.381 16.64 0.00 44.49 4.40
1354 1384 1.281867 TGTCCCTCAAGCAGGTAATGG 59.718 52.381 0.00 0.00 41.51 3.16
1372 1402 5.726980 AATGGTGCAGTTATGTTGATGTT 57.273 34.783 0.00 0.00 0.00 2.71
1464 1494 7.481275 AATGTTTGGAATGTTGAAATGTGAC 57.519 32.000 0.00 0.00 0.00 3.67
1593 1625 2.633481 GCGGGATAGATCTACCCAAACT 59.367 50.000 26.68 5.59 43.40 2.66
1656 1688 8.645814 TGGGTACTATCATATGATCTACGTTT 57.354 34.615 21.42 0.00 36.05 3.60
1671 1703 2.927028 ACGTTTTATGGGCTATGGACC 58.073 47.619 0.00 0.00 42.24 4.46
1734 1766 8.159344 ACTTCAAACTTCTGGTTTCTAAGATG 57.841 34.615 14.36 5.79 45.26 2.90
1774 1806 5.187772 AGTCCTGATGTTATGCTTGTGTAGA 59.812 40.000 0.00 0.00 0.00 2.59
1818 1850 4.026310 CGGTTTTATAGTCCATGCGTGTAC 60.026 45.833 4.96 0.00 0.00 2.90
1828 1872 0.685097 ATGCGTGTACTGGAGGTGTT 59.315 50.000 0.00 0.00 0.00 3.32
1895 1939 5.726980 TGGATTCCAGAGGAAATTGTTTG 57.273 39.130 0.00 0.00 45.41 2.93
1896 1940 5.147032 TGGATTCCAGAGGAAATTGTTTGT 58.853 37.500 0.00 0.00 45.41 2.83
1906 1950 5.600696 AGGAAATTGTTTGTCATTGACACC 58.399 37.500 18.84 13.53 42.60 4.16
1979 2331 3.381045 TCACTTGACTCTGTACTTTGCG 58.619 45.455 0.00 0.00 0.00 4.85
1986 2338 2.544267 ACTCTGTACTTTGCGTGAAAGC 59.456 45.455 8.47 0.00 44.48 3.51
1992 2344 3.764885 ACTTTGCGTGAAAGCCATATC 57.235 42.857 8.47 0.00 44.48 1.63
2161 2572 9.915629 ATTAGAATCATCTCGTAAGTTCCATAC 57.084 33.333 0.00 0.00 37.10 2.39
2224 2635 1.509703 GTCGGTTTCACCACCTTCTC 58.490 55.000 0.00 0.00 38.47 2.87
2251 2662 4.941263 GTGCTTACATGTGGGATTGTCTTA 59.059 41.667 9.11 0.00 0.00 2.10
2303 2715 7.147976 GTGCAGTGATTTTAAAAGATGTCCTT 58.852 34.615 6.79 0.00 36.47 3.36
2456 2869 7.094420 CCACATTTTAAAATTGAAATCCACCCC 60.094 37.037 10.77 0.00 0.00 4.95
2480 2893 2.023673 TGTTGCTCCCTTCACAAACAG 58.976 47.619 0.00 0.00 0.00 3.16
2520 2933 0.746204 GAAGCTCACCTAAGGGCTGC 60.746 60.000 0.00 0.00 35.08 5.25
2546 2960 1.144057 CCTAGGGCATGACACGGAC 59.856 63.158 0.00 0.00 0.00 4.79
2569 2983 3.788694 CACAGCGAAAATCGTTTGACAAA 59.211 39.130 0.00 0.00 42.81 2.83
2600 3014 7.067615 AGTCAACACAGTATTATCTGTCGATCT 59.932 37.037 0.00 0.00 45.37 2.75
2674 3088 1.004745 CCAAGCTGGGATGGTTACTGT 59.995 52.381 0.00 0.00 32.67 3.55
2705 3124 6.555315 AGTAATATTTACTGCTGCAAGTTGC 58.445 36.000 21.17 21.17 45.29 4.17
2800 3219 5.706916 CATTTTCTTCCTTGTCCTGACATG 58.293 41.667 0.03 3.66 41.52 3.21
2801 3220 2.479566 TCTTCCTTGTCCTGACATGC 57.520 50.000 0.03 0.00 41.52 4.06
2802 3221 1.699083 TCTTCCTTGTCCTGACATGCA 59.301 47.619 0.03 0.00 41.52 3.96
2803 3222 2.306805 TCTTCCTTGTCCTGACATGCAT 59.693 45.455 0.03 0.00 41.52 3.96
2804 3223 2.885135 TCCTTGTCCTGACATGCATT 57.115 45.000 0.00 0.00 41.52 3.56
2805 3224 3.159213 TCCTTGTCCTGACATGCATTT 57.841 42.857 0.00 0.00 41.52 2.32
2806 3225 3.499338 TCCTTGTCCTGACATGCATTTT 58.501 40.909 0.00 0.00 41.52 1.82
2807 3226 3.507233 TCCTTGTCCTGACATGCATTTTC 59.493 43.478 0.00 0.00 41.52 2.29
2808 3227 3.508793 CCTTGTCCTGACATGCATTTTCT 59.491 43.478 0.00 0.00 41.52 2.52
2809 3228 4.021719 CCTTGTCCTGACATGCATTTTCTT 60.022 41.667 0.00 0.00 41.52 2.52
2810 3229 4.771590 TGTCCTGACATGCATTTTCTTC 57.228 40.909 0.00 0.00 36.21 2.87
2811 3230 3.507233 TGTCCTGACATGCATTTTCTTCC 59.493 43.478 0.00 0.00 36.21 3.46
2812 3231 3.760684 GTCCTGACATGCATTTTCTTCCT 59.239 43.478 0.00 0.00 0.00 3.36
2813 3232 4.219288 GTCCTGACATGCATTTTCTTCCTT 59.781 41.667 0.00 0.00 0.00 3.36
2814 3233 4.219070 TCCTGACATGCATTTTCTTCCTTG 59.781 41.667 0.00 0.00 0.00 3.61
2815 3234 4.021719 CCTGACATGCATTTTCTTCCTTGT 60.022 41.667 0.00 0.00 0.00 3.16
2816 3235 5.125100 TGACATGCATTTTCTTCCTTGTC 57.875 39.130 0.00 0.00 34.71 3.18
2817 3236 4.022068 TGACATGCATTTTCTTCCTTGTCC 60.022 41.667 0.00 0.00 33.79 4.02
2818 3237 4.154942 ACATGCATTTTCTTCCTTGTCCT 58.845 39.130 0.00 0.00 0.00 3.85
2819 3238 4.021719 ACATGCATTTTCTTCCTTGTCCTG 60.022 41.667 0.00 0.00 0.00 3.86
2820 3239 3.831323 TGCATTTTCTTCCTTGTCCTGA 58.169 40.909 0.00 0.00 0.00 3.86
2821 3240 3.569701 TGCATTTTCTTCCTTGTCCTGAC 59.430 43.478 0.00 0.00 0.00 3.51
2822 3241 3.569701 GCATTTTCTTCCTTGTCCTGACA 59.430 43.478 0.00 0.00 39.98 3.58
3451 3967 4.227134 CCTAGGCGGATGCGCTGT 62.227 66.667 30.52 20.17 44.10 4.40
3523 4039 3.126001 TGCCAACCGGATATCATCTTC 57.874 47.619 9.46 0.00 0.00 2.87
3610 4129 0.533978 TGCGTTTTAGCAGTGCCAGA 60.534 50.000 12.58 0.00 42.92 3.86
3625 4144 1.095600 CCAGATTCTCCGACGTCTCA 58.904 55.000 14.70 0.00 0.00 3.27
3655 4174 2.721167 CCCGGCGATCAGAGGACAA 61.721 63.158 9.30 0.00 0.00 3.18
3678 4197 0.739462 TTGAGCGACGGCGATGATTT 60.739 50.000 18.90 0.00 46.35 2.17
4009 4552 0.800683 CGTGCGAATAGAACTGCGGA 60.801 55.000 0.00 0.00 0.00 5.54
4051 4594 2.026822 ACCGATCATCAAAAGGCTGACT 60.027 45.455 0.00 0.00 0.00 3.41
4089 4633 1.457346 GGACTCCATTCTGTTGCTGG 58.543 55.000 0.00 0.00 0.00 4.85
4106 4650 2.182842 GGGTGTCGCTGATGCCATC 61.183 63.158 0.00 0.00 35.36 3.51
4112 4656 2.891936 GCTGATGCCATCGCGACA 60.892 61.111 12.93 5.45 38.08 4.35
4113 4657 3.009140 CTGATGCCATCGCGACAC 58.991 61.111 12.93 4.09 38.08 3.67
4207 4751 1.953231 GCTTGGATCCTTGGCTTGGC 61.953 60.000 14.23 2.17 0.00 4.52
4250 4794 2.689983 GTTATGAGCAAACTCCATGGGG 59.310 50.000 11.11 11.11 42.74 4.96
4274 4818 3.435327 TGTTCACTGACGATGTATTTGCC 59.565 43.478 0.00 0.00 0.00 4.52
4291 4835 1.067142 TGCCGAGTGACCTGTACATTC 60.067 52.381 0.00 0.00 0.00 2.67
4356 4900 0.943673 TCATTGCTGTTGTGGTGTCG 59.056 50.000 0.00 0.00 0.00 4.35
4373 4917 2.029666 GCCGTCAGGGATGGATCG 59.970 66.667 8.63 0.00 40.94 3.69
4376 4920 1.364171 CGTCAGGGATGGATCGGAC 59.636 63.158 0.00 0.00 0.00 4.79
4466 5010 4.928661 ATGCGAAGATAATTATGCCGTC 57.071 40.909 1.78 0.00 0.00 4.79
4509 5063 0.813184 AAAGGCCTGCATCAACATCG 59.187 50.000 5.69 0.00 0.00 3.84
4584 5139 8.254508 AGCTATCTCTTTCTGTAGTTTGGTAAG 58.745 37.037 0.00 0.00 0.00 2.34
4733 5294 0.179158 ACGGACACAAAAACAACGGC 60.179 50.000 0.00 0.00 0.00 5.68
4773 5350 6.670695 AAGAAAATTAAGCATGGGTGAACT 57.329 33.333 0.00 0.00 0.00 3.01
4795 5372 2.799412 GGCTAGCTCATGACATCGAAAG 59.201 50.000 15.72 0.00 0.00 2.62
4796 5373 3.452474 GCTAGCTCATGACATCGAAAGT 58.548 45.455 7.70 0.00 0.00 2.66
4797 5374 3.868077 GCTAGCTCATGACATCGAAAGTT 59.132 43.478 7.70 0.00 0.00 2.66
4798 5375 4.026145 GCTAGCTCATGACATCGAAAGTTC 60.026 45.833 7.70 0.00 0.00 3.01
4799 5376 3.930336 AGCTCATGACATCGAAAGTTCA 58.070 40.909 0.00 0.00 0.00 3.18
4800 5377 4.318332 AGCTCATGACATCGAAAGTTCAA 58.682 39.130 0.00 0.00 0.00 2.69
4801 5378 4.756642 AGCTCATGACATCGAAAGTTCAAA 59.243 37.500 0.00 0.00 0.00 2.69
4802 5379 5.239306 AGCTCATGACATCGAAAGTTCAAAA 59.761 36.000 0.00 0.00 0.00 2.44
4829 5406 0.536260 CCTGGAGCAAGACAGAGGAG 59.464 60.000 0.00 0.00 36.86 3.69
4960 5538 4.708909 GGGAGCATCAAGGAATTTCTTTCT 59.291 41.667 0.00 0.00 36.25 2.52
4961 5539 5.186603 GGGAGCATCAAGGAATTTCTTTCTT 59.813 40.000 0.00 0.00 36.25 2.52
4962 5540 6.295518 GGGAGCATCAAGGAATTTCTTTCTTT 60.296 38.462 0.00 0.00 36.25 2.52
4963 5541 6.810676 GGAGCATCAAGGAATTTCTTTCTTTC 59.189 38.462 0.00 0.00 36.25 2.62
4981 5559 1.167851 TCCTGCTTGGCAAGAAATCG 58.832 50.000 30.45 8.68 38.41 3.34
4984 5562 1.541147 CTGCTTGGCAAGAAATCGGAA 59.459 47.619 30.45 0.00 38.41 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.253044 TAGGTCATGAGGCAGGCAAC 59.747 55.000 0.00 0.00 0.00 4.17
21 22 0.991146 TTAGGTCATGAGGCAGGCAA 59.009 50.000 0.00 0.00 0.00 4.52
22 23 1.216064 ATTAGGTCATGAGGCAGGCA 58.784 50.000 0.00 0.00 0.00 4.75
23 24 2.158696 AGAATTAGGTCATGAGGCAGGC 60.159 50.000 0.00 0.00 0.00 4.85
24 25 3.135348 TGAGAATTAGGTCATGAGGCAGG 59.865 47.826 0.00 0.00 0.00 4.85
25 26 4.412796 TGAGAATTAGGTCATGAGGCAG 57.587 45.455 0.00 0.00 0.00 4.85
41 42 5.767665 TCTTTCGACCAAAATTCCATGAGAA 59.232 36.000 0.00 0.00 39.32 2.87
42 43 5.312895 TCTTTCGACCAAAATTCCATGAGA 58.687 37.500 0.00 0.00 0.00 3.27
43 44 5.627499 TCTTTCGACCAAAATTCCATGAG 57.373 39.130 0.00 0.00 0.00 2.90
44 45 5.048083 CCTTCTTTCGACCAAAATTCCATGA 60.048 40.000 0.00 0.00 0.00 3.07
45 46 5.048083 TCCTTCTTTCGACCAAAATTCCATG 60.048 40.000 0.00 0.00 0.00 3.66
46 47 5.076873 TCCTTCTTTCGACCAAAATTCCAT 58.923 37.500 0.00 0.00 0.00 3.41
47 48 4.465886 TCCTTCTTTCGACCAAAATTCCA 58.534 39.130 0.00 0.00 0.00 3.53
48 49 5.220381 GTTCCTTCTTTCGACCAAAATTCC 58.780 41.667 0.00 0.00 0.00 3.01
49 50 5.827666 TGTTCCTTCTTTCGACCAAAATTC 58.172 37.500 0.00 0.00 0.00 2.17
50 51 5.845391 TGTTCCTTCTTTCGACCAAAATT 57.155 34.783 0.00 0.00 0.00 1.82
51 52 5.772521 CATGTTCCTTCTTTCGACCAAAAT 58.227 37.500 0.00 0.00 0.00 1.82
52 53 4.499019 GCATGTTCCTTCTTTCGACCAAAA 60.499 41.667 0.00 0.00 0.00 2.44
53 54 3.004315 GCATGTTCCTTCTTTCGACCAAA 59.996 43.478 0.00 0.00 0.00 3.28
54 55 2.552315 GCATGTTCCTTCTTTCGACCAA 59.448 45.455 0.00 0.00 0.00 3.67
55 56 2.151202 GCATGTTCCTTCTTTCGACCA 58.849 47.619 0.00 0.00 0.00 4.02
56 57 2.427506 AGCATGTTCCTTCTTTCGACC 58.572 47.619 0.00 0.00 0.00 4.79
57 58 4.246458 AGTAGCATGTTCCTTCTTTCGAC 58.754 43.478 0.00 0.00 0.00 4.20
58 59 4.537135 AGTAGCATGTTCCTTCTTTCGA 57.463 40.909 0.00 0.00 0.00 3.71
59 60 4.268884 GCTAGTAGCATGTTCCTTCTTTCG 59.731 45.833 17.47 0.00 41.89 3.46
60 61 5.423886 AGCTAGTAGCATGTTCCTTCTTTC 58.576 41.667 23.77 0.00 45.56 2.62
61 62 5.428184 AGCTAGTAGCATGTTCCTTCTTT 57.572 39.130 23.77 0.00 45.56 2.52
62 63 5.181748 CAAGCTAGTAGCATGTTCCTTCTT 58.818 41.667 23.77 2.74 45.56 2.52
63 64 4.764172 CAAGCTAGTAGCATGTTCCTTCT 58.236 43.478 23.77 0.00 45.56 2.85
71 72 3.553511 CCGAGAAACAAGCTAGTAGCATG 59.446 47.826 23.77 23.07 45.56 4.06
72 73 3.430929 CCCGAGAAACAAGCTAGTAGCAT 60.431 47.826 23.77 9.68 45.56 3.79
73 74 2.094182 CCCGAGAAACAAGCTAGTAGCA 60.094 50.000 23.77 0.00 45.56 3.49
74 75 2.541556 CCCGAGAAACAAGCTAGTAGC 58.458 52.381 14.62 14.62 42.84 3.58
75 76 2.738964 GCCCCGAGAAACAAGCTAGTAG 60.739 54.545 0.00 0.00 0.00 2.57
76 77 1.206371 GCCCCGAGAAACAAGCTAGTA 59.794 52.381 0.00 0.00 0.00 1.82
77 78 0.036294 GCCCCGAGAAACAAGCTAGT 60.036 55.000 0.00 0.00 0.00 2.57
78 79 0.250513 AGCCCCGAGAAACAAGCTAG 59.749 55.000 0.00 0.00 0.00 3.42
79 80 1.563924 TAGCCCCGAGAAACAAGCTA 58.436 50.000 0.00 0.00 0.00 3.32
80 81 0.912486 ATAGCCCCGAGAAACAAGCT 59.088 50.000 0.00 0.00 0.00 3.74
81 82 1.751437 AATAGCCCCGAGAAACAAGC 58.249 50.000 0.00 0.00 0.00 4.01
82 83 5.368989 AGAATAATAGCCCCGAGAAACAAG 58.631 41.667 0.00 0.00 0.00 3.16
83 84 5.367945 AGAATAATAGCCCCGAGAAACAA 57.632 39.130 0.00 0.00 0.00 2.83
84 85 5.364446 TGTAGAATAATAGCCCCGAGAAACA 59.636 40.000 0.00 0.00 0.00 2.83
114 115 4.250464 ACGAAATGCTATCTTTCACCGAA 58.750 39.130 0.00 0.00 33.20 4.30
146 147 0.112218 TAGCTCTGCTTTGGGGCAAA 59.888 50.000 0.00 0.00 41.94 3.68
148 149 0.332632 AATAGCTCTGCTTTGGGGCA 59.667 50.000 0.00 0.00 40.44 5.36
149 150 1.406898 GAAATAGCTCTGCTTTGGGGC 59.593 52.381 0.00 0.00 40.44 5.80
150 151 2.027385 GGAAATAGCTCTGCTTTGGGG 58.973 52.381 0.00 0.00 40.44 4.96
153 154 6.991531 AGATCTAAGGAAATAGCTCTGCTTTG 59.008 38.462 0.00 0.00 40.44 2.77
154 155 7.135591 AGATCTAAGGAAATAGCTCTGCTTT 57.864 36.000 0.00 0.00 40.44 3.51
156 157 6.516527 CGAAGATCTAAGGAAATAGCTCTGCT 60.517 42.308 0.00 0.00 43.41 4.24
157 158 5.633182 CGAAGATCTAAGGAAATAGCTCTGC 59.367 44.000 0.00 0.00 30.83 4.26
158 159 6.640499 CACGAAGATCTAAGGAAATAGCTCTG 59.360 42.308 0.00 0.00 30.83 3.35
159 160 6.737346 GCACGAAGATCTAAGGAAATAGCTCT 60.737 42.308 0.00 0.00 31.47 4.09
160 161 5.404066 GCACGAAGATCTAAGGAAATAGCTC 59.596 44.000 0.00 0.00 0.00 4.09
161 162 5.163405 TGCACGAAGATCTAAGGAAATAGCT 60.163 40.000 0.00 0.00 0.00 3.32
162 163 5.050490 TGCACGAAGATCTAAGGAAATAGC 58.950 41.667 0.00 0.00 0.00 2.97
163 164 6.367422 GGATGCACGAAGATCTAAGGAAATAG 59.633 42.308 0.00 0.00 0.00 1.73
164 165 6.042093 AGGATGCACGAAGATCTAAGGAAATA 59.958 38.462 0.00 0.00 0.00 1.40
170 183 3.648009 GGAGGATGCACGAAGATCTAAG 58.352 50.000 0.00 0.00 0.00 2.18
385 404 8.433421 AATGAAGTATACATAGTTTCGTTGGG 57.567 34.615 5.50 0.00 0.00 4.12
455 475 8.407064 AGTAGAGAGTAAAGATGTACATTTCCG 58.593 37.037 10.30 0.00 0.00 4.30
480 500 2.636830 CCAGGATGAAGTAGCCACAAG 58.363 52.381 0.00 0.00 39.69 3.16
577 604 3.133003 TCCACTACTAGCATCCAAAGCTC 59.867 47.826 0.00 0.00 42.32 4.09
627 654 3.070302 GCTCTCCAGGAACACTTATAGGG 59.930 52.174 0.00 0.00 0.00 3.53
644 671 4.323553 ACATATGTTAGGGAACGCTCTC 57.676 45.455 1.41 0.00 38.51 3.20
649 676 9.537192 TTGACTATAAACATATGTTAGGGAACG 57.463 33.333 21.07 8.94 38.51 3.95
685 712 5.293569 CGACTAACAACTTCAAACTTCTGGT 59.706 40.000 0.00 0.00 0.00 4.00
689 716 6.945072 ACATCGACTAACAACTTCAAACTTC 58.055 36.000 0.00 0.00 0.00 3.01
690 717 6.920569 ACATCGACTAACAACTTCAAACTT 57.079 33.333 0.00 0.00 0.00 2.66
691 718 6.920569 AACATCGACTAACAACTTCAAACT 57.079 33.333 0.00 0.00 0.00 2.66
692 719 7.792508 CACTAACATCGACTAACAACTTCAAAC 59.207 37.037 0.00 0.00 0.00 2.93
693 720 7.707464 TCACTAACATCGACTAACAACTTCAAA 59.293 33.333 0.00 0.00 0.00 2.69
694 721 7.204604 TCACTAACATCGACTAACAACTTCAA 58.795 34.615 0.00 0.00 0.00 2.69
695 722 6.741109 TCACTAACATCGACTAACAACTTCA 58.259 36.000 0.00 0.00 0.00 3.02
697 724 9.871238 ATAATCACTAACATCGACTAACAACTT 57.129 29.630 0.00 0.00 0.00 2.66
698 725 9.302345 CATAATCACTAACATCGACTAACAACT 57.698 33.333 0.00 0.00 0.00 3.16
699 726 8.540492 CCATAATCACTAACATCGACTAACAAC 58.460 37.037 0.00 0.00 0.00 3.32
700 727 8.471609 TCCATAATCACTAACATCGACTAACAA 58.528 33.333 0.00 0.00 0.00 2.83
701 728 8.002984 TCCATAATCACTAACATCGACTAACA 57.997 34.615 0.00 0.00 0.00 2.41
747 776 7.280876 TTTCGGATGAAATGAAGAAGGATACTG 59.719 37.037 0.00 0.00 42.67 2.74
883 913 9.736023 AACTCAAATTCTTTTAAGCAGTAACAG 57.264 29.630 0.00 0.00 0.00 3.16
889 919 5.406477 GGCCAACTCAAATTCTTTTAAGCAG 59.594 40.000 0.00 0.00 0.00 4.24
938 968 7.726033 ATAACACAAGAGATCTCCTAGTGTT 57.274 36.000 35.07 35.07 44.14 3.32
966 996 6.909550 TTTTAAAAATCAAGAGCCCTGCTA 57.090 33.333 0.00 0.00 39.88 3.49
967 997 5.806654 TTTTAAAAATCAAGAGCCCTGCT 57.193 34.783 0.00 0.00 43.88 4.24
1071 1101 0.685131 TGCCATTGCCCAGAATCCTG 60.685 55.000 0.00 0.00 36.38 3.86
1084 1114 2.187239 TGAGATCTCCCTCTGCCATT 57.813 50.000 20.03 0.00 34.38 3.16
1354 1384 9.869844 GATAATCTAACATCAACATAACTGCAC 57.130 33.333 0.00 0.00 0.00 4.57
1372 1402 4.776349 TGCCAGCGAAAAAGGATAATCTA 58.224 39.130 0.00 0.00 0.00 1.98
1384 1414 0.966875 ATTGCCAGATGCCAGCGAAA 60.967 50.000 0.00 0.00 40.16 3.46
1438 1468 8.487176 GTCACATTTCAACATTCCAAACATTAC 58.513 33.333 0.00 0.00 0.00 1.89
1464 1494 6.792326 AGCTGATTATGTTGTGTTCATGATG 58.208 36.000 0.00 0.00 0.00 3.07
1524 1556 1.616327 AGGGCCAGGCTGTACATGA 60.616 57.895 12.43 0.00 0.00 3.07
1593 1625 3.752359 AGGCAGAGGTACAGGTAGTAA 57.248 47.619 0.00 0.00 33.72 2.24
1652 1684 3.139077 GAGGTCCATAGCCCATAAAACG 58.861 50.000 0.00 0.00 0.00 3.60
1656 1688 2.505672 TGGAGGTCCATAGCCCATAA 57.494 50.000 0.00 0.00 42.01 1.90
1734 1766 6.158023 TCAGGACTCGGGAGAATATTTTAC 57.842 41.667 2.08 0.00 39.18 2.01
1748 1780 3.308053 CACAAGCATAACATCAGGACTCG 59.692 47.826 0.00 0.00 0.00 4.18
1774 1806 5.870978 ACCGTATCGTTGTTAATTTGCTACT 59.129 36.000 0.00 0.00 0.00 2.57
1818 1850 3.753294 ACTGAACACTAACACCTCCAG 57.247 47.619 0.00 0.00 0.00 3.86
1895 1939 1.741706 CAGGCAGATGGTGTCAATGAC 59.258 52.381 6.41 6.41 30.67 3.06
1896 1940 1.951895 GCAGGCAGATGGTGTCAATGA 60.952 52.381 0.00 0.00 30.67 2.57
1906 1950 1.201647 CAAGTTTGAGGCAGGCAGATG 59.798 52.381 0.00 0.00 0.00 2.90
1979 2331 3.487544 GGCTTTCACGATATGGCTTTCAC 60.488 47.826 0.00 0.00 0.00 3.18
1986 2338 3.003689 GGTTCATGGCTTTCACGATATGG 59.996 47.826 0.00 0.00 0.00 2.74
1992 2344 3.009723 ACTATGGTTCATGGCTTTCACG 58.990 45.455 0.00 0.00 0.00 4.35
2044 2455 2.046411 TATGTGTGTGGGCTGCCG 60.046 61.111 13.40 0.00 0.00 5.69
2171 2582 9.174166 ACCATTGGACATCTTTTATAACAGTAC 57.826 33.333 10.37 0.00 0.00 2.73
2224 2635 0.327924 TCCCACATGTAAGCACAGGG 59.672 55.000 8.54 8.54 40.76 4.45
2337 2750 0.244178 GGACGTCTGTTGGAGTCTCC 59.756 60.000 16.46 12.40 36.96 3.71
2456 2869 1.679139 TGTGAAGGGAGCAACACAAG 58.321 50.000 0.00 0.00 39.70 3.16
2480 2893 1.272147 ACCTTGGGCAGAACTGGAATC 60.272 52.381 3.99 0.00 0.00 2.52
2515 2928 2.663188 CTAGGATTCGCCGCAGCC 60.663 66.667 0.00 0.00 43.43 4.85
2520 2933 1.669115 CATGCCCTAGGATTCGCCG 60.669 63.158 11.48 0.00 43.43 6.46
2546 2960 2.286713 TGTCAAACGATTTTCGCTGTGG 60.287 45.455 0.00 0.00 45.12 4.17
2600 3014 5.047306 AGCTACAGAACAGTGTATTGCTACA 60.047 40.000 0.00 0.00 34.40 2.74
2705 3124 4.511826 AGCTTCAAAAGAGTACAAAGGACG 59.488 41.667 0.00 0.00 0.00 4.79
2800 3219 3.569701 TGTCAGGACAAGGAAGAAAATGC 59.430 43.478 0.00 0.00 38.56 3.56
2801 3220 5.706916 CATGTCAGGACAAGGAAGAAAATG 58.293 41.667 6.17 0.00 45.41 2.32
2802 3221 4.219288 GCATGTCAGGACAAGGAAGAAAAT 59.781 41.667 6.17 0.00 45.41 1.82
2803 3222 3.569701 GCATGTCAGGACAAGGAAGAAAA 59.430 43.478 6.17 0.00 45.41 2.29
2804 3223 3.149196 GCATGTCAGGACAAGGAAGAAA 58.851 45.455 6.17 0.00 45.41 2.52
2805 3224 2.106338 TGCATGTCAGGACAAGGAAGAA 59.894 45.455 6.17 0.00 45.41 2.52
2806 3225 1.699083 TGCATGTCAGGACAAGGAAGA 59.301 47.619 6.17 0.00 45.41 2.87
2807 3226 2.189594 TGCATGTCAGGACAAGGAAG 57.810 50.000 6.17 0.00 45.41 3.46
2808 3227 2.885135 ATGCATGTCAGGACAAGGAA 57.115 45.000 6.17 0.00 45.41 3.36
2809 3228 2.885135 AATGCATGTCAGGACAAGGA 57.115 45.000 6.17 3.70 45.41 3.36
2810 3229 3.129287 GGTAAATGCATGTCAGGACAAGG 59.871 47.826 6.17 3.43 45.41 3.61
2811 3230 4.012374 AGGTAAATGCATGTCAGGACAAG 58.988 43.478 6.17 3.18 45.41 3.16
2812 3231 4.032960 AGGTAAATGCATGTCAGGACAA 57.967 40.909 6.17 0.00 45.41 3.18
2813 3232 3.719268 AGGTAAATGCATGTCAGGACA 57.281 42.857 0.00 4.37 46.44 4.02
2814 3233 5.009010 CCATTAGGTAAATGCATGTCAGGAC 59.991 44.000 0.00 0.00 43.18 3.85
2815 3234 5.132502 CCATTAGGTAAATGCATGTCAGGA 58.867 41.667 0.00 0.00 43.18 3.86
2816 3235 5.443185 CCATTAGGTAAATGCATGTCAGG 57.557 43.478 0.00 0.00 43.18 3.86
3108 3624 5.011023 TGTGTCGGTAGACCTCGATATACTA 59.989 44.000 0.00 0.00 46.51 1.82
3194 3710 9.042008 GTACGAACATATGTCAGATTAAATGGT 57.958 33.333 9.23 0.35 0.00 3.55
3451 3967 1.408683 GCAGGGATGGAGTGCATTACA 60.409 52.381 0.00 0.00 37.16 2.41
3523 4039 1.337387 GATTCGTCTAGGGAACGGGAG 59.663 57.143 2.99 0.00 0.00 4.30
3610 4129 3.552875 TCCTATTGAGACGTCGGAGAAT 58.447 45.455 10.46 9.33 39.69 2.40
3625 4144 3.489513 GCCGGGCCACCTCCTATT 61.490 66.667 8.12 0.00 33.28 1.73
3678 4197 0.250124 AATCAACGGCGTGTCCTTCA 60.250 50.000 15.70 0.00 0.00 3.02
3772 4297 2.810852 CTGGAAGTTCTTGACAGAAGCC 59.189 50.000 2.25 0.00 39.86 4.35
3775 4300 3.134623 TGAGCTGGAAGTTCTTGACAGAA 59.865 43.478 10.09 0.00 45.30 3.02
4009 4552 1.228245 AGCCATGACGGTTGCAACT 60.228 52.632 27.64 10.40 36.97 3.16
4089 4633 3.414272 GATGGCATCAGCGACACC 58.586 61.111 22.23 0.00 43.41 4.16
4106 4650 1.886861 CTCAGTTTTCGGGTGTCGCG 61.887 60.000 0.00 0.00 41.10 5.87
4112 4656 4.903045 TCTAATTCCTCAGTTTTCGGGT 57.097 40.909 0.00 0.00 0.00 5.28
4113 4657 4.636206 CCTTCTAATTCCTCAGTTTTCGGG 59.364 45.833 0.00 0.00 0.00 5.14
4207 4751 0.097499 TATCACGTACACAGCCGTCG 59.903 55.000 0.00 0.00 34.59 5.12
4250 4794 4.846137 GCAAATACATCGTCAGTGAACAAC 59.154 41.667 0.00 0.00 0.00 3.32
4274 4818 5.651530 AGTTATGAATGTACAGGTCACTCG 58.348 41.667 12.82 0.00 0.00 4.18
4291 4835 8.327429 GTTCAATTTCAAACACACCAAGTTATG 58.673 33.333 0.00 0.00 0.00 1.90
4356 4900 2.029666 CGATCCATCCCTGACGGC 59.970 66.667 0.00 0.00 0.00 5.68
4373 4917 4.610945 CAATCAAACACAAAGTCTGGTCC 58.389 43.478 0.00 0.00 0.00 4.46
4376 4920 4.311816 AGCAATCAAACACAAAGTCTGG 57.688 40.909 0.00 0.00 0.00 3.86
4584 5139 0.036388 TCGACCATGTCCCTTTCAGC 60.036 55.000 0.00 0.00 0.00 4.26
4733 5294 2.228059 TCTTTCTATCTACTCGGGGCG 58.772 52.381 0.00 0.00 0.00 6.13
4773 5350 1.402787 TCGATGTCATGAGCTAGCCA 58.597 50.000 12.13 9.78 0.00 4.75
4795 5372 0.392706 CCAGGGGCAAGGTTTTGAAC 59.607 55.000 0.00 0.00 36.36 3.18
4796 5373 0.263172 TCCAGGGGCAAGGTTTTGAA 59.737 50.000 0.00 0.00 36.36 2.69
4797 5374 0.178964 CTCCAGGGGCAAGGTTTTGA 60.179 55.000 0.00 0.00 36.36 2.69
4798 5375 1.820010 GCTCCAGGGGCAAGGTTTTG 61.820 60.000 6.37 0.00 37.36 2.44
4799 5376 1.533994 GCTCCAGGGGCAAGGTTTT 60.534 57.895 6.37 0.00 0.00 2.43
4800 5377 2.118294 GCTCCAGGGGCAAGGTTT 59.882 61.111 6.37 0.00 0.00 3.27
4801 5378 2.777960 TTGCTCCAGGGGCAAGGTT 61.778 57.895 24.02 0.00 43.50 3.50
4802 5379 3.185203 TTGCTCCAGGGGCAAGGT 61.185 61.111 24.02 0.00 43.50 3.50
4841 5418 1.733399 GACGTCGACAAGCCACTCC 60.733 63.158 17.16 0.00 0.00 3.85
4962 5540 1.167851 CGATTTCTTGCCAAGCAGGA 58.832 50.000 0.00 0.00 42.66 3.86
4963 5541 0.171903 CCGATTTCTTGCCAAGCAGG 59.828 55.000 0.00 0.00 40.61 4.85



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.