Multiple sequence alignment - TraesCS4A01G209000
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS4A01G209000
chr4A
100.000
5001
0
0
1
5001
502031925
502026925
0.000000e+00
9236
1
TraesCS4A01G209000
chr4B
93.097
4737
225
47
305
5001
126601081
126596407
0.000000e+00
6842
2
TraesCS4A01G209000
chr4D
95.488
2061
63
13
2944
5001
89538560
89536527
0.000000e+00
3264
3
TraesCS4A01G209000
chr4D
90.877
1699
95
27
299
1971
89541609
89539945
0.000000e+00
2224
4
TraesCS4A01G209000
chr4D
86.621
725
64
17
2226
2940
89539360
89538659
0.000000e+00
771
5
TraesCS4A01G209000
chr4D
90.594
202
18
1
1988
2189
89539561
89539361
2.970000e-67
267
6
TraesCS4A01G209000
chr4D
85.393
178
14
7
86
251
89541776
89541599
1.850000e-39
174
7
TraesCS4A01G209000
chr1B
72.659
801
159
43
3246
4004
491983446
491982664
1.410000e-50
211
8
TraesCS4A01G209000
chr1D
72.869
704
151
32
3333
4004
367429870
367429175
6.560000e-49
206
9
TraesCS4A01G209000
chr3A
78.638
323
57
11
3681
4000
627864875
627865188
2.360000e-48
204
10
TraesCS4A01G209000
chr7D
88.281
128
15
0
3681
3808
412885765
412885638
2.410000e-33
154
11
TraesCS4A01G209000
chr7B
87.500
128
16
0
3681
3808
427302946
427302819
1.120000e-31
148
12
TraesCS4A01G209000
chr1A
72.840
486
112
14
3333
3805
466928060
466927582
1.120000e-31
148
13
TraesCS4A01G209000
chr7A
85.938
128
18
0
3681
3808
474296328
474296201
2.430000e-28
137
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS4A01G209000
chr4A
502026925
502031925
5000
True
9236
9236
100.0000
1
5001
1
chr4A.!!$R1
5000
1
TraesCS4A01G209000
chr4B
126596407
126601081
4674
True
6842
6842
93.0970
305
5001
1
chr4B.!!$R1
4696
2
TraesCS4A01G209000
chr4D
89536527
89541776
5249
True
1340
3264
89.7946
86
5001
5
chr4D.!!$R1
4915
3
TraesCS4A01G209000
chr1B
491982664
491983446
782
True
211
211
72.6590
3246
4004
1
chr1B.!!$R1
758
4
TraesCS4A01G209000
chr1D
367429175
367429870
695
True
206
206
72.8690
3333
4004
1
chr1D.!!$R1
671
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
163
164
0.106521
TTTTTGCCCCAAAGCAGAGC
59.893
50.000
0.00
0.0
45.13
4.09
F
164
165
0.760189
TTTTGCCCCAAAGCAGAGCT
60.760
50.000
0.00
0.0
45.13
4.09
F
1155
1185
1.209019
CCTGTAATCCAGAGCAGCTGT
59.791
52.381
16.64
0.0
44.49
4.40
F
1828
1872
0.685097
ATGCGTGTACTGGAGGTGTT
59.315
50.000
0.00
0.0
0.00
3.32
F
3610
4129
0.533978
TGCGTTTTAGCAGTGCCAGA
60.534
50.000
12.58
0.0
42.92
3.86
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1071
1101
0.685131
TGCCATTGCCCAGAATCCTG
60.685
55.0
0.00
0.0
36.38
3.86
R
1384
1414
0.966875
ATTGCCAGATGCCAGCGAAA
60.967
50.0
0.00
0.0
40.16
3.46
R
2337
2750
0.244178
GGACGTCTGTTGGAGTCTCC
59.756
60.0
16.46
12.4
36.96
3.71
R
3678
4197
0.250124
AATCAACGGCGTGTCCTTCA
60.250
50.0
15.70
0.0
0.00
3.02
R
4584
5139
0.036388
TCGACCATGTCCCTTTCAGC
60.036
55.0
0.00
0.0
0.00
4.26
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
22
23
4.698625
AGGGGGCGTCTCCGAGTT
62.699
66.667
0.00
0.00
35.63
3.01
23
24
4.452733
GGGGGCGTCTCCGAGTTG
62.453
72.222
0.00
0.00
35.63
3.16
26
27
4.070552
GGCGTCTCCGAGTTGCCT
62.071
66.667
19.88
0.00
42.44
4.75
27
28
2.811317
GCGTCTCCGAGTTGCCTG
60.811
66.667
0.00
0.00
35.63
4.85
28
29
2.811317
CGTCTCCGAGTTGCCTGC
60.811
66.667
0.00
0.00
35.63
4.85
29
30
2.435059
GTCTCCGAGTTGCCTGCC
60.435
66.667
0.00
0.00
0.00
4.85
30
31
2.604686
TCTCCGAGTTGCCTGCCT
60.605
61.111
0.00
0.00
0.00
4.75
31
32
2.125350
CTCCGAGTTGCCTGCCTC
60.125
66.667
0.00
0.00
0.00
4.70
32
33
2.922503
TCCGAGTTGCCTGCCTCA
60.923
61.111
0.00
0.00
0.00
3.86
33
34
2.249413
CTCCGAGTTGCCTGCCTCAT
62.249
60.000
0.00
0.00
0.00
2.90
34
35
2.110967
CCGAGTTGCCTGCCTCATG
61.111
63.158
0.00
0.00
0.00
3.07
35
36
1.078918
CGAGTTGCCTGCCTCATGA
60.079
57.895
0.00
0.00
0.00
3.07
36
37
1.364626
CGAGTTGCCTGCCTCATGAC
61.365
60.000
0.00
0.00
0.00
3.06
37
38
1.001641
AGTTGCCTGCCTCATGACC
60.002
57.895
0.00
0.00
0.00
4.02
38
39
1.001641
GTTGCCTGCCTCATGACCT
60.002
57.895
0.00
0.00
0.00
3.85
39
40
0.253044
GTTGCCTGCCTCATGACCTA
59.747
55.000
0.00
0.00
0.00
3.08
40
41
0.991146
TTGCCTGCCTCATGACCTAA
59.009
50.000
0.00
0.00
0.00
2.69
41
42
1.216064
TGCCTGCCTCATGACCTAAT
58.784
50.000
0.00
0.00
0.00
1.73
42
43
1.565759
TGCCTGCCTCATGACCTAATT
59.434
47.619
0.00
0.00
0.00
1.40
43
44
2.225467
GCCTGCCTCATGACCTAATTC
58.775
52.381
0.00
0.00
0.00
2.17
44
45
2.158696
GCCTGCCTCATGACCTAATTCT
60.159
50.000
0.00
0.00
0.00
2.40
45
46
3.737850
CCTGCCTCATGACCTAATTCTC
58.262
50.000
0.00
0.00
0.00
2.87
46
47
3.135348
CCTGCCTCATGACCTAATTCTCA
59.865
47.826
0.00
0.00
0.00
3.27
47
48
4.202440
CCTGCCTCATGACCTAATTCTCAT
60.202
45.833
0.00
0.00
0.00
2.90
48
49
4.711399
TGCCTCATGACCTAATTCTCATG
58.289
43.478
11.77
11.77
43.53
3.07
49
50
4.070716
GCCTCATGACCTAATTCTCATGG
58.929
47.826
15.54
9.50
42.75
3.66
50
51
4.202398
GCCTCATGACCTAATTCTCATGGA
60.202
45.833
15.54
6.69
42.75
3.41
51
52
5.688500
GCCTCATGACCTAATTCTCATGGAA
60.689
44.000
15.54
0.00
42.75
3.53
52
53
6.540995
CCTCATGACCTAATTCTCATGGAAT
58.459
40.000
15.54
0.00
45.61
3.01
63
64
6.588719
ATTCTCATGGAATTTTGGTCGAAA
57.411
33.333
0.00
0.00
41.42
3.46
64
65
5.627499
TCTCATGGAATTTTGGTCGAAAG
57.373
39.130
0.00
0.00
0.00
2.62
65
66
5.312895
TCTCATGGAATTTTGGTCGAAAGA
58.687
37.500
0.00
0.00
38.16
2.52
66
67
5.767665
TCTCATGGAATTTTGGTCGAAAGAA
59.232
36.000
0.00
0.00
45.01
2.52
67
68
6.012658
TCATGGAATTTTGGTCGAAAGAAG
57.987
37.500
0.00
0.00
45.01
2.85
68
69
4.846779
TGGAATTTTGGTCGAAAGAAGG
57.153
40.909
0.00
0.00
45.01
3.46
69
70
4.465886
TGGAATTTTGGTCGAAAGAAGGA
58.534
39.130
0.00
0.00
45.01
3.36
70
71
4.890581
TGGAATTTTGGTCGAAAGAAGGAA
59.109
37.500
0.00
0.00
45.01
3.36
71
72
5.220381
GGAATTTTGGTCGAAAGAAGGAAC
58.780
41.667
0.00
0.00
45.01
3.62
72
73
5.221165
GGAATTTTGGTCGAAAGAAGGAACA
60.221
40.000
0.00
0.00
45.01
3.18
73
74
6.405278
AATTTTGGTCGAAAGAAGGAACAT
57.595
33.333
0.00
0.00
45.01
2.71
74
75
4.829064
TTTGGTCGAAAGAAGGAACATG
57.171
40.909
0.00
0.00
45.01
3.21
75
76
2.151202
TGGTCGAAAGAAGGAACATGC
58.849
47.619
0.00
0.00
45.01
4.06
76
77
2.224523
TGGTCGAAAGAAGGAACATGCT
60.225
45.455
0.00
0.00
45.01
3.79
77
78
3.007506
TGGTCGAAAGAAGGAACATGCTA
59.992
43.478
0.00
0.00
45.01
3.49
78
79
3.371285
GGTCGAAAGAAGGAACATGCTAC
59.629
47.826
0.00
0.00
45.01
3.58
79
80
4.246458
GTCGAAAGAAGGAACATGCTACT
58.754
43.478
0.00
0.00
45.01
2.57
80
81
5.408356
GTCGAAAGAAGGAACATGCTACTA
58.592
41.667
0.00
0.00
45.01
1.82
81
82
5.517054
GTCGAAAGAAGGAACATGCTACTAG
59.483
44.000
0.00
0.00
45.01
2.57
82
83
4.268884
CGAAAGAAGGAACATGCTACTAGC
59.731
45.833
0.61
0.61
42.82
3.42
83
84
5.423886
GAAAGAAGGAACATGCTACTAGCT
58.576
41.667
9.49
0.00
42.97
3.32
84
85
5.428184
AAGAAGGAACATGCTACTAGCTT
57.572
39.130
9.49
0.17
42.97
3.74
114
115
7.839705
TCTCGGGGCTATTATTCTACATCTAAT
59.160
37.037
0.00
0.00
0.00
1.73
135
136
4.857871
TTCGGTGAAAGATAGCATTTCG
57.142
40.909
0.00
0.00
39.10
3.46
137
138
4.250464
TCGGTGAAAGATAGCATTTCGTT
58.750
39.130
0.00
0.00
39.10
3.85
163
164
0.106521
TTTTTGCCCCAAAGCAGAGC
59.893
50.000
0.00
0.00
45.13
4.09
164
165
0.760189
TTTTGCCCCAAAGCAGAGCT
60.760
50.000
0.00
0.00
45.13
4.09
170
183
2.027385
CCCCAAAGCAGAGCTATTTCC
58.973
52.381
0.00
0.00
38.25
3.13
181
194
5.633182
GCAGAGCTATTTCCTTAGATCTTCG
59.367
44.000
0.00
0.00
41.01
3.79
221
234
7.512058
AGAGTCAGTTATCATCTATGGGTTGAT
59.488
37.037
0.00
0.00
37.85
2.57
236
249
4.525912
GGTTGATTTATGCATCATCCCC
57.474
45.455
0.19
5.76
37.18
4.81
238
251
4.590222
GGTTGATTTATGCATCATCCCCTT
59.410
41.667
0.19
0.00
37.18
3.95
240
253
6.408434
GGTTGATTTATGCATCATCCCCTTTT
60.408
38.462
0.19
0.00
37.18
2.27
241
254
7.201992
GGTTGATTTATGCATCATCCCCTTTTA
60.202
37.037
0.19
0.00
37.18
1.52
242
255
8.370182
GTTGATTTATGCATCATCCCCTTTTAT
58.630
33.333
0.19
0.00
33.07
1.40
243
256
9.599056
TTGATTTATGCATCATCCCCTTTTATA
57.401
29.630
0.19
0.00
33.07
0.98
244
257
9.772605
TGATTTATGCATCATCCCCTTTTATAT
57.227
29.630
0.19
0.00
0.00
0.86
377
390
3.266541
TGCGAAAGTTAGCATGTTGTG
57.733
42.857
2.25
0.00
38.59
3.33
385
404
2.418368
TAGCATGTTGTGGTGGGATC
57.582
50.000
0.00
0.00
39.30
3.36
401
420
3.775866
TGGGATCCCAACGAAACTATGTA
59.224
43.478
32.09
1.77
44.12
2.29
455
475
1.668419
ACCGAAATGCTCATACTGCC
58.332
50.000
0.00
0.00
0.00
4.85
480
500
7.648510
CCGGAAATGTACATCTTTACTCTCTAC
59.351
40.741
9.23
0.00
0.00
2.59
577
604
5.980698
ATTCTTTGATAGTCATGCGAGTG
57.019
39.130
0.00
0.00
0.00
3.51
627
654
2.917343
GTTTTGAAAGAAGCGGCTATGC
59.083
45.455
1.35
0.00
0.00
3.14
644
671
3.864789
ATGCCCTATAAGTGTTCCTGG
57.135
47.619
0.00
0.00
0.00
4.45
649
676
3.070302
CCCTATAAGTGTTCCTGGAGAGC
59.930
52.174
0.00
0.00
0.00
4.09
747
776
4.506654
GGAATCACATGAGCAATCAAATGC
59.493
41.667
0.00
0.00
46.78
3.56
883
913
7.538678
CACAATATTTTGTCTTGCAGGTTCTAC
59.461
37.037
0.00
0.00
44.24
2.59
889
919
4.628074
TGTCTTGCAGGTTCTACTGTTAC
58.372
43.478
0.00
0.00
40.59
2.50
938
968
6.539826
CACTTCTATTGGCATGATAGTGTTCA
59.460
38.462
0.00
0.00
0.00
3.18
1084
1114
1.288188
TGACATCAGGATTCTGGGCA
58.712
50.000
0.00
0.00
41.23
5.36
1155
1185
1.209019
CCTGTAATCCAGAGCAGCTGT
59.791
52.381
16.64
0.00
44.49
4.40
1354
1384
1.281867
TGTCCCTCAAGCAGGTAATGG
59.718
52.381
0.00
0.00
41.51
3.16
1372
1402
5.726980
AATGGTGCAGTTATGTTGATGTT
57.273
34.783
0.00
0.00
0.00
2.71
1464
1494
7.481275
AATGTTTGGAATGTTGAAATGTGAC
57.519
32.000
0.00
0.00
0.00
3.67
1593
1625
2.633481
GCGGGATAGATCTACCCAAACT
59.367
50.000
26.68
5.59
43.40
2.66
1656
1688
8.645814
TGGGTACTATCATATGATCTACGTTT
57.354
34.615
21.42
0.00
36.05
3.60
1671
1703
2.927028
ACGTTTTATGGGCTATGGACC
58.073
47.619
0.00
0.00
42.24
4.46
1734
1766
8.159344
ACTTCAAACTTCTGGTTTCTAAGATG
57.841
34.615
14.36
5.79
45.26
2.90
1774
1806
5.187772
AGTCCTGATGTTATGCTTGTGTAGA
59.812
40.000
0.00
0.00
0.00
2.59
1818
1850
4.026310
CGGTTTTATAGTCCATGCGTGTAC
60.026
45.833
4.96
0.00
0.00
2.90
1828
1872
0.685097
ATGCGTGTACTGGAGGTGTT
59.315
50.000
0.00
0.00
0.00
3.32
1895
1939
5.726980
TGGATTCCAGAGGAAATTGTTTG
57.273
39.130
0.00
0.00
45.41
2.93
1896
1940
5.147032
TGGATTCCAGAGGAAATTGTTTGT
58.853
37.500
0.00
0.00
45.41
2.83
1906
1950
5.600696
AGGAAATTGTTTGTCATTGACACC
58.399
37.500
18.84
13.53
42.60
4.16
1979
2331
3.381045
TCACTTGACTCTGTACTTTGCG
58.619
45.455
0.00
0.00
0.00
4.85
1986
2338
2.544267
ACTCTGTACTTTGCGTGAAAGC
59.456
45.455
8.47
0.00
44.48
3.51
1992
2344
3.764885
ACTTTGCGTGAAAGCCATATC
57.235
42.857
8.47
0.00
44.48
1.63
2161
2572
9.915629
ATTAGAATCATCTCGTAAGTTCCATAC
57.084
33.333
0.00
0.00
37.10
2.39
2224
2635
1.509703
GTCGGTTTCACCACCTTCTC
58.490
55.000
0.00
0.00
38.47
2.87
2251
2662
4.941263
GTGCTTACATGTGGGATTGTCTTA
59.059
41.667
9.11
0.00
0.00
2.10
2303
2715
7.147976
GTGCAGTGATTTTAAAAGATGTCCTT
58.852
34.615
6.79
0.00
36.47
3.36
2456
2869
7.094420
CCACATTTTAAAATTGAAATCCACCCC
60.094
37.037
10.77
0.00
0.00
4.95
2480
2893
2.023673
TGTTGCTCCCTTCACAAACAG
58.976
47.619
0.00
0.00
0.00
3.16
2520
2933
0.746204
GAAGCTCACCTAAGGGCTGC
60.746
60.000
0.00
0.00
35.08
5.25
2546
2960
1.144057
CCTAGGGCATGACACGGAC
59.856
63.158
0.00
0.00
0.00
4.79
2569
2983
3.788694
CACAGCGAAAATCGTTTGACAAA
59.211
39.130
0.00
0.00
42.81
2.83
2600
3014
7.067615
AGTCAACACAGTATTATCTGTCGATCT
59.932
37.037
0.00
0.00
45.37
2.75
2674
3088
1.004745
CCAAGCTGGGATGGTTACTGT
59.995
52.381
0.00
0.00
32.67
3.55
2705
3124
6.555315
AGTAATATTTACTGCTGCAAGTTGC
58.445
36.000
21.17
21.17
45.29
4.17
2800
3219
5.706916
CATTTTCTTCCTTGTCCTGACATG
58.293
41.667
0.03
3.66
41.52
3.21
2801
3220
2.479566
TCTTCCTTGTCCTGACATGC
57.520
50.000
0.03
0.00
41.52
4.06
2802
3221
1.699083
TCTTCCTTGTCCTGACATGCA
59.301
47.619
0.03
0.00
41.52
3.96
2803
3222
2.306805
TCTTCCTTGTCCTGACATGCAT
59.693
45.455
0.03
0.00
41.52
3.96
2804
3223
2.885135
TCCTTGTCCTGACATGCATT
57.115
45.000
0.00
0.00
41.52
3.56
2805
3224
3.159213
TCCTTGTCCTGACATGCATTT
57.841
42.857
0.00
0.00
41.52
2.32
2806
3225
3.499338
TCCTTGTCCTGACATGCATTTT
58.501
40.909
0.00
0.00
41.52
1.82
2807
3226
3.507233
TCCTTGTCCTGACATGCATTTTC
59.493
43.478
0.00
0.00
41.52
2.29
2808
3227
3.508793
CCTTGTCCTGACATGCATTTTCT
59.491
43.478
0.00
0.00
41.52
2.52
2809
3228
4.021719
CCTTGTCCTGACATGCATTTTCTT
60.022
41.667
0.00
0.00
41.52
2.52
2810
3229
4.771590
TGTCCTGACATGCATTTTCTTC
57.228
40.909
0.00
0.00
36.21
2.87
2811
3230
3.507233
TGTCCTGACATGCATTTTCTTCC
59.493
43.478
0.00
0.00
36.21
3.46
2812
3231
3.760684
GTCCTGACATGCATTTTCTTCCT
59.239
43.478
0.00
0.00
0.00
3.36
2813
3232
4.219288
GTCCTGACATGCATTTTCTTCCTT
59.781
41.667
0.00
0.00
0.00
3.36
2814
3233
4.219070
TCCTGACATGCATTTTCTTCCTTG
59.781
41.667
0.00
0.00
0.00
3.61
2815
3234
4.021719
CCTGACATGCATTTTCTTCCTTGT
60.022
41.667
0.00
0.00
0.00
3.16
2816
3235
5.125100
TGACATGCATTTTCTTCCTTGTC
57.875
39.130
0.00
0.00
34.71
3.18
2817
3236
4.022068
TGACATGCATTTTCTTCCTTGTCC
60.022
41.667
0.00
0.00
33.79
4.02
2818
3237
4.154942
ACATGCATTTTCTTCCTTGTCCT
58.845
39.130
0.00
0.00
0.00
3.85
2819
3238
4.021719
ACATGCATTTTCTTCCTTGTCCTG
60.022
41.667
0.00
0.00
0.00
3.86
2820
3239
3.831323
TGCATTTTCTTCCTTGTCCTGA
58.169
40.909
0.00
0.00
0.00
3.86
2821
3240
3.569701
TGCATTTTCTTCCTTGTCCTGAC
59.430
43.478
0.00
0.00
0.00
3.51
2822
3241
3.569701
GCATTTTCTTCCTTGTCCTGACA
59.430
43.478
0.00
0.00
39.98
3.58
3451
3967
4.227134
CCTAGGCGGATGCGCTGT
62.227
66.667
30.52
20.17
44.10
4.40
3523
4039
3.126001
TGCCAACCGGATATCATCTTC
57.874
47.619
9.46
0.00
0.00
2.87
3610
4129
0.533978
TGCGTTTTAGCAGTGCCAGA
60.534
50.000
12.58
0.00
42.92
3.86
3625
4144
1.095600
CCAGATTCTCCGACGTCTCA
58.904
55.000
14.70
0.00
0.00
3.27
3655
4174
2.721167
CCCGGCGATCAGAGGACAA
61.721
63.158
9.30
0.00
0.00
3.18
3678
4197
0.739462
TTGAGCGACGGCGATGATTT
60.739
50.000
18.90
0.00
46.35
2.17
4009
4552
0.800683
CGTGCGAATAGAACTGCGGA
60.801
55.000
0.00
0.00
0.00
5.54
4051
4594
2.026822
ACCGATCATCAAAAGGCTGACT
60.027
45.455
0.00
0.00
0.00
3.41
4089
4633
1.457346
GGACTCCATTCTGTTGCTGG
58.543
55.000
0.00
0.00
0.00
4.85
4106
4650
2.182842
GGGTGTCGCTGATGCCATC
61.183
63.158
0.00
0.00
35.36
3.51
4112
4656
2.891936
GCTGATGCCATCGCGACA
60.892
61.111
12.93
5.45
38.08
4.35
4113
4657
3.009140
CTGATGCCATCGCGACAC
58.991
61.111
12.93
4.09
38.08
3.67
4207
4751
1.953231
GCTTGGATCCTTGGCTTGGC
61.953
60.000
14.23
2.17
0.00
4.52
4250
4794
2.689983
GTTATGAGCAAACTCCATGGGG
59.310
50.000
11.11
11.11
42.74
4.96
4274
4818
3.435327
TGTTCACTGACGATGTATTTGCC
59.565
43.478
0.00
0.00
0.00
4.52
4291
4835
1.067142
TGCCGAGTGACCTGTACATTC
60.067
52.381
0.00
0.00
0.00
2.67
4356
4900
0.943673
TCATTGCTGTTGTGGTGTCG
59.056
50.000
0.00
0.00
0.00
4.35
4373
4917
2.029666
GCCGTCAGGGATGGATCG
59.970
66.667
8.63
0.00
40.94
3.69
4376
4920
1.364171
CGTCAGGGATGGATCGGAC
59.636
63.158
0.00
0.00
0.00
4.79
4466
5010
4.928661
ATGCGAAGATAATTATGCCGTC
57.071
40.909
1.78
0.00
0.00
4.79
4509
5063
0.813184
AAAGGCCTGCATCAACATCG
59.187
50.000
5.69
0.00
0.00
3.84
4584
5139
8.254508
AGCTATCTCTTTCTGTAGTTTGGTAAG
58.745
37.037
0.00
0.00
0.00
2.34
4733
5294
0.179158
ACGGACACAAAAACAACGGC
60.179
50.000
0.00
0.00
0.00
5.68
4773
5350
6.670695
AAGAAAATTAAGCATGGGTGAACT
57.329
33.333
0.00
0.00
0.00
3.01
4795
5372
2.799412
GGCTAGCTCATGACATCGAAAG
59.201
50.000
15.72
0.00
0.00
2.62
4796
5373
3.452474
GCTAGCTCATGACATCGAAAGT
58.548
45.455
7.70
0.00
0.00
2.66
4797
5374
3.868077
GCTAGCTCATGACATCGAAAGTT
59.132
43.478
7.70
0.00
0.00
2.66
4798
5375
4.026145
GCTAGCTCATGACATCGAAAGTTC
60.026
45.833
7.70
0.00
0.00
3.01
4799
5376
3.930336
AGCTCATGACATCGAAAGTTCA
58.070
40.909
0.00
0.00
0.00
3.18
4800
5377
4.318332
AGCTCATGACATCGAAAGTTCAA
58.682
39.130
0.00
0.00
0.00
2.69
4801
5378
4.756642
AGCTCATGACATCGAAAGTTCAAA
59.243
37.500
0.00
0.00
0.00
2.69
4802
5379
5.239306
AGCTCATGACATCGAAAGTTCAAAA
59.761
36.000
0.00
0.00
0.00
2.44
4829
5406
0.536260
CCTGGAGCAAGACAGAGGAG
59.464
60.000
0.00
0.00
36.86
3.69
4960
5538
4.708909
GGGAGCATCAAGGAATTTCTTTCT
59.291
41.667
0.00
0.00
36.25
2.52
4961
5539
5.186603
GGGAGCATCAAGGAATTTCTTTCTT
59.813
40.000
0.00
0.00
36.25
2.52
4962
5540
6.295518
GGGAGCATCAAGGAATTTCTTTCTTT
60.296
38.462
0.00
0.00
36.25
2.52
4963
5541
6.810676
GGAGCATCAAGGAATTTCTTTCTTTC
59.189
38.462
0.00
0.00
36.25
2.62
4981
5559
1.167851
TCCTGCTTGGCAAGAAATCG
58.832
50.000
30.45
8.68
38.41
3.34
4984
5562
1.541147
CTGCTTGGCAAGAAATCGGAA
59.459
47.619
30.45
0.00
38.41
4.30
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
20
21
0.253044
TAGGTCATGAGGCAGGCAAC
59.747
55.000
0.00
0.00
0.00
4.17
21
22
0.991146
TTAGGTCATGAGGCAGGCAA
59.009
50.000
0.00
0.00
0.00
4.52
22
23
1.216064
ATTAGGTCATGAGGCAGGCA
58.784
50.000
0.00
0.00
0.00
4.75
23
24
2.158696
AGAATTAGGTCATGAGGCAGGC
60.159
50.000
0.00
0.00
0.00
4.85
24
25
3.135348
TGAGAATTAGGTCATGAGGCAGG
59.865
47.826
0.00
0.00
0.00
4.85
25
26
4.412796
TGAGAATTAGGTCATGAGGCAG
57.587
45.455
0.00
0.00
0.00
4.85
41
42
5.767665
TCTTTCGACCAAAATTCCATGAGAA
59.232
36.000
0.00
0.00
39.32
2.87
42
43
5.312895
TCTTTCGACCAAAATTCCATGAGA
58.687
37.500
0.00
0.00
0.00
3.27
43
44
5.627499
TCTTTCGACCAAAATTCCATGAG
57.373
39.130
0.00
0.00
0.00
2.90
44
45
5.048083
CCTTCTTTCGACCAAAATTCCATGA
60.048
40.000
0.00
0.00
0.00
3.07
45
46
5.048083
TCCTTCTTTCGACCAAAATTCCATG
60.048
40.000
0.00
0.00
0.00
3.66
46
47
5.076873
TCCTTCTTTCGACCAAAATTCCAT
58.923
37.500
0.00
0.00
0.00
3.41
47
48
4.465886
TCCTTCTTTCGACCAAAATTCCA
58.534
39.130
0.00
0.00
0.00
3.53
48
49
5.220381
GTTCCTTCTTTCGACCAAAATTCC
58.780
41.667
0.00
0.00
0.00
3.01
49
50
5.827666
TGTTCCTTCTTTCGACCAAAATTC
58.172
37.500
0.00
0.00
0.00
2.17
50
51
5.845391
TGTTCCTTCTTTCGACCAAAATT
57.155
34.783
0.00
0.00
0.00
1.82
51
52
5.772521
CATGTTCCTTCTTTCGACCAAAAT
58.227
37.500
0.00
0.00
0.00
1.82
52
53
4.499019
GCATGTTCCTTCTTTCGACCAAAA
60.499
41.667
0.00
0.00
0.00
2.44
53
54
3.004315
GCATGTTCCTTCTTTCGACCAAA
59.996
43.478
0.00
0.00
0.00
3.28
54
55
2.552315
GCATGTTCCTTCTTTCGACCAA
59.448
45.455
0.00
0.00
0.00
3.67
55
56
2.151202
GCATGTTCCTTCTTTCGACCA
58.849
47.619
0.00
0.00
0.00
4.02
56
57
2.427506
AGCATGTTCCTTCTTTCGACC
58.572
47.619
0.00
0.00
0.00
4.79
57
58
4.246458
AGTAGCATGTTCCTTCTTTCGAC
58.754
43.478
0.00
0.00
0.00
4.20
58
59
4.537135
AGTAGCATGTTCCTTCTTTCGA
57.463
40.909
0.00
0.00
0.00
3.71
59
60
4.268884
GCTAGTAGCATGTTCCTTCTTTCG
59.731
45.833
17.47
0.00
41.89
3.46
60
61
5.423886
AGCTAGTAGCATGTTCCTTCTTTC
58.576
41.667
23.77
0.00
45.56
2.62
61
62
5.428184
AGCTAGTAGCATGTTCCTTCTTT
57.572
39.130
23.77
0.00
45.56
2.52
62
63
5.181748
CAAGCTAGTAGCATGTTCCTTCTT
58.818
41.667
23.77
2.74
45.56
2.52
63
64
4.764172
CAAGCTAGTAGCATGTTCCTTCT
58.236
43.478
23.77
0.00
45.56
2.85
71
72
3.553511
CCGAGAAACAAGCTAGTAGCATG
59.446
47.826
23.77
23.07
45.56
4.06
72
73
3.430929
CCCGAGAAACAAGCTAGTAGCAT
60.431
47.826
23.77
9.68
45.56
3.79
73
74
2.094182
CCCGAGAAACAAGCTAGTAGCA
60.094
50.000
23.77
0.00
45.56
3.49
74
75
2.541556
CCCGAGAAACAAGCTAGTAGC
58.458
52.381
14.62
14.62
42.84
3.58
75
76
2.738964
GCCCCGAGAAACAAGCTAGTAG
60.739
54.545
0.00
0.00
0.00
2.57
76
77
1.206371
GCCCCGAGAAACAAGCTAGTA
59.794
52.381
0.00
0.00
0.00
1.82
77
78
0.036294
GCCCCGAGAAACAAGCTAGT
60.036
55.000
0.00
0.00
0.00
2.57
78
79
0.250513
AGCCCCGAGAAACAAGCTAG
59.749
55.000
0.00
0.00
0.00
3.42
79
80
1.563924
TAGCCCCGAGAAACAAGCTA
58.436
50.000
0.00
0.00
0.00
3.32
80
81
0.912486
ATAGCCCCGAGAAACAAGCT
59.088
50.000
0.00
0.00
0.00
3.74
81
82
1.751437
AATAGCCCCGAGAAACAAGC
58.249
50.000
0.00
0.00
0.00
4.01
82
83
5.368989
AGAATAATAGCCCCGAGAAACAAG
58.631
41.667
0.00
0.00
0.00
3.16
83
84
5.367945
AGAATAATAGCCCCGAGAAACAA
57.632
39.130
0.00
0.00
0.00
2.83
84
85
5.364446
TGTAGAATAATAGCCCCGAGAAACA
59.636
40.000
0.00
0.00
0.00
2.83
114
115
4.250464
ACGAAATGCTATCTTTCACCGAA
58.750
39.130
0.00
0.00
33.20
4.30
146
147
0.112218
TAGCTCTGCTTTGGGGCAAA
59.888
50.000
0.00
0.00
41.94
3.68
148
149
0.332632
AATAGCTCTGCTTTGGGGCA
59.667
50.000
0.00
0.00
40.44
5.36
149
150
1.406898
GAAATAGCTCTGCTTTGGGGC
59.593
52.381
0.00
0.00
40.44
5.80
150
151
2.027385
GGAAATAGCTCTGCTTTGGGG
58.973
52.381
0.00
0.00
40.44
4.96
153
154
6.991531
AGATCTAAGGAAATAGCTCTGCTTTG
59.008
38.462
0.00
0.00
40.44
2.77
154
155
7.135591
AGATCTAAGGAAATAGCTCTGCTTT
57.864
36.000
0.00
0.00
40.44
3.51
156
157
6.516527
CGAAGATCTAAGGAAATAGCTCTGCT
60.517
42.308
0.00
0.00
43.41
4.24
157
158
5.633182
CGAAGATCTAAGGAAATAGCTCTGC
59.367
44.000
0.00
0.00
30.83
4.26
158
159
6.640499
CACGAAGATCTAAGGAAATAGCTCTG
59.360
42.308
0.00
0.00
30.83
3.35
159
160
6.737346
GCACGAAGATCTAAGGAAATAGCTCT
60.737
42.308
0.00
0.00
31.47
4.09
160
161
5.404066
GCACGAAGATCTAAGGAAATAGCTC
59.596
44.000
0.00
0.00
0.00
4.09
161
162
5.163405
TGCACGAAGATCTAAGGAAATAGCT
60.163
40.000
0.00
0.00
0.00
3.32
162
163
5.050490
TGCACGAAGATCTAAGGAAATAGC
58.950
41.667
0.00
0.00
0.00
2.97
163
164
6.367422
GGATGCACGAAGATCTAAGGAAATAG
59.633
42.308
0.00
0.00
0.00
1.73
164
165
6.042093
AGGATGCACGAAGATCTAAGGAAATA
59.958
38.462
0.00
0.00
0.00
1.40
170
183
3.648009
GGAGGATGCACGAAGATCTAAG
58.352
50.000
0.00
0.00
0.00
2.18
385
404
8.433421
AATGAAGTATACATAGTTTCGTTGGG
57.567
34.615
5.50
0.00
0.00
4.12
455
475
8.407064
AGTAGAGAGTAAAGATGTACATTTCCG
58.593
37.037
10.30
0.00
0.00
4.30
480
500
2.636830
CCAGGATGAAGTAGCCACAAG
58.363
52.381
0.00
0.00
39.69
3.16
577
604
3.133003
TCCACTACTAGCATCCAAAGCTC
59.867
47.826
0.00
0.00
42.32
4.09
627
654
3.070302
GCTCTCCAGGAACACTTATAGGG
59.930
52.174
0.00
0.00
0.00
3.53
644
671
4.323553
ACATATGTTAGGGAACGCTCTC
57.676
45.455
1.41
0.00
38.51
3.20
649
676
9.537192
TTGACTATAAACATATGTTAGGGAACG
57.463
33.333
21.07
8.94
38.51
3.95
685
712
5.293569
CGACTAACAACTTCAAACTTCTGGT
59.706
40.000
0.00
0.00
0.00
4.00
689
716
6.945072
ACATCGACTAACAACTTCAAACTTC
58.055
36.000
0.00
0.00
0.00
3.01
690
717
6.920569
ACATCGACTAACAACTTCAAACTT
57.079
33.333
0.00
0.00
0.00
2.66
691
718
6.920569
AACATCGACTAACAACTTCAAACT
57.079
33.333
0.00
0.00
0.00
2.66
692
719
7.792508
CACTAACATCGACTAACAACTTCAAAC
59.207
37.037
0.00
0.00
0.00
2.93
693
720
7.707464
TCACTAACATCGACTAACAACTTCAAA
59.293
33.333
0.00
0.00
0.00
2.69
694
721
7.204604
TCACTAACATCGACTAACAACTTCAA
58.795
34.615
0.00
0.00
0.00
2.69
695
722
6.741109
TCACTAACATCGACTAACAACTTCA
58.259
36.000
0.00
0.00
0.00
3.02
697
724
9.871238
ATAATCACTAACATCGACTAACAACTT
57.129
29.630
0.00
0.00
0.00
2.66
698
725
9.302345
CATAATCACTAACATCGACTAACAACT
57.698
33.333
0.00
0.00
0.00
3.16
699
726
8.540492
CCATAATCACTAACATCGACTAACAAC
58.460
37.037
0.00
0.00
0.00
3.32
700
727
8.471609
TCCATAATCACTAACATCGACTAACAA
58.528
33.333
0.00
0.00
0.00
2.83
701
728
8.002984
TCCATAATCACTAACATCGACTAACA
57.997
34.615
0.00
0.00
0.00
2.41
747
776
7.280876
TTTCGGATGAAATGAAGAAGGATACTG
59.719
37.037
0.00
0.00
42.67
2.74
883
913
9.736023
AACTCAAATTCTTTTAAGCAGTAACAG
57.264
29.630
0.00
0.00
0.00
3.16
889
919
5.406477
GGCCAACTCAAATTCTTTTAAGCAG
59.594
40.000
0.00
0.00
0.00
4.24
938
968
7.726033
ATAACACAAGAGATCTCCTAGTGTT
57.274
36.000
35.07
35.07
44.14
3.32
966
996
6.909550
TTTTAAAAATCAAGAGCCCTGCTA
57.090
33.333
0.00
0.00
39.88
3.49
967
997
5.806654
TTTTAAAAATCAAGAGCCCTGCT
57.193
34.783
0.00
0.00
43.88
4.24
1071
1101
0.685131
TGCCATTGCCCAGAATCCTG
60.685
55.000
0.00
0.00
36.38
3.86
1084
1114
2.187239
TGAGATCTCCCTCTGCCATT
57.813
50.000
20.03
0.00
34.38
3.16
1354
1384
9.869844
GATAATCTAACATCAACATAACTGCAC
57.130
33.333
0.00
0.00
0.00
4.57
1372
1402
4.776349
TGCCAGCGAAAAAGGATAATCTA
58.224
39.130
0.00
0.00
0.00
1.98
1384
1414
0.966875
ATTGCCAGATGCCAGCGAAA
60.967
50.000
0.00
0.00
40.16
3.46
1438
1468
8.487176
GTCACATTTCAACATTCCAAACATTAC
58.513
33.333
0.00
0.00
0.00
1.89
1464
1494
6.792326
AGCTGATTATGTTGTGTTCATGATG
58.208
36.000
0.00
0.00
0.00
3.07
1524
1556
1.616327
AGGGCCAGGCTGTACATGA
60.616
57.895
12.43
0.00
0.00
3.07
1593
1625
3.752359
AGGCAGAGGTACAGGTAGTAA
57.248
47.619
0.00
0.00
33.72
2.24
1652
1684
3.139077
GAGGTCCATAGCCCATAAAACG
58.861
50.000
0.00
0.00
0.00
3.60
1656
1688
2.505672
TGGAGGTCCATAGCCCATAA
57.494
50.000
0.00
0.00
42.01
1.90
1734
1766
6.158023
TCAGGACTCGGGAGAATATTTTAC
57.842
41.667
2.08
0.00
39.18
2.01
1748
1780
3.308053
CACAAGCATAACATCAGGACTCG
59.692
47.826
0.00
0.00
0.00
4.18
1774
1806
5.870978
ACCGTATCGTTGTTAATTTGCTACT
59.129
36.000
0.00
0.00
0.00
2.57
1818
1850
3.753294
ACTGAACACTAACACCTCCAG
57.247
47.619
0.00
0.00
0.00
3.86
1895
1939
1.741706
CAGGCAGATGGTGTCAATGAC
59.258
52.381
6.41
6.41
30.67
3.06
1896
1940
1.951895
GCAGGCAGATGGTGTCAATGA
60.952
52.381
0.00
0.00
30.67
2.57
1906
1950
1.201647
CAAGTTTGAGGCAGGCAGATG
59.798
52.381
0.00
0.00
0.00
2.90
1979
2331
3.487544
GGCTTTCACGATATGGCTTTCAC
60.488
47.826
0.00
0.00
0.00
3.18
1986
2338
3.003689
GGTTCATGGCTTTCACGATATGG
59.996
47.826
0.00
0.00
0.00
2.74
1992
2344
3.009723
ACTATGGTTCATGGCTTTCACG
58.990
45.455
0.00
0.00
0.00
4.35
2044
2455
2.046411
TATGTGTGTGGGCTGCCG
60.046
61.111
13.40
0.00
0.00
5.69
2171
2582
9.174166
ACCATTGGACATCTTTTATAACAGTAC
57.826
33.333
10.37
0.00
0.00
2.73
2224
2635
0.327924
TCCCACATGTAAGCACAGGG
59.672
55.000
8.54
8.54
40.76
4.45
2337
2750
0.244178
GGACGTCTGTTGGAGTCTCC
59.756
60.000
16.46
12.40
36.96
3.71
2456
2869
1.679139
TGTGAAGGGAGCAACACAAG
58.321
50.000
0.00
0.00
39.70
3.16
2480
2893
1.272147
ACCTTGGGCAGAACTGGAATC
60.272
52.381
3.99
0.00
0.00
2.52
2515
2928
2.663188
CTAGGATTCGCCGCAGCC
60.663
66.667
0.00
0.00
43.43
4.85
2520
2933
1.669115
CATGCCCTAGGATTCGCCG
60.669
63.158
11.48
0.00
43.43
6.46
2546
2960
2.286713
TGTCAAACGATTTTCGCTGTGG
60.287
45.455
0.00
0.00
45.12
4.17
2600
3014
5.047306
AGCTACAGAACAGTGTATTGCTACA
60.047
40.000
0.00
0.00
34.40
2.74
2705
3124
4.511826
AGCTTCAAAAGAGTACAAAGGACG
59.488
41.667
0.00
0.00
0.00
4.79
2800
3219
3.569701
TGTCAGGACAAGGAAGAAAATGC
59.430
43.478
0.00
0.00
38.56
3.56
2801
3220
5.706916
CATGTCAGGACAAGGAAGAAAATG
58.293
41.667
6.17
0.00
45.41
2.32
2802
3221
4.219288
GCATGTCAGGACAAGGAAGAAAAT
59.781
41.667
6.17
0.00
45.41
1.82
2803
3222
3.569701
GCATGTCAGGACAAGGAAGAAAA
59.430
43.478
6.17
0.00
45.41
2.29
2804
3223
3.149196
GCATGTCAGGACAAGGAAGAAA
58.851
45.455
6.17
0.00
45.41
2.52
2805
3224
2.106338
TGCATGTCAGGACAAGGAAGAA
59.894
45.455
6.17
0.00
45.41
2.52
2806
3225
1.699083
TGCATGTCAGGACAAGGAAGA
59.301
47.619
6.17
0.00
45.41
2.87
2807
3226
2.189594
TGCATGTCAGGACAAGGAAG
57.810
50.000
6.17
0.00
45.41
3.46
2808
3227
2.885135
ATGCATGTCAGGACAAGGAA
57.115
45.000
6.17
0.00
45.41
3.36
2809
3228
2.885135
AATGCATGTCAGGACAAGGA
57.115
45.000
6.17
3.70
45.41
3.36
2810
3229
3.129287
GGTAAATGCATGTCAGGACAAGG
59.871
47.826
6.17
3.43
45.41
3.61
2811
3230
4.012374
AGGTAAATGCATGTCAGGACAAG
58.988
43.478
6.17
3.18
45.41
3.16
2812
3231
4.032960
AGGTAAATGCATGTCAGGACAA
57.967
40.909
6.17
0.00
45.41
3.18
2813
3232
3.719268
AGGTAAATGCATGTCAGGACA
57.281
42.857
0.00
4.37
46.44
4.02
2814
3233
5.009010
CCATTAGGTAAATGCATGTCAGGAC
59.991
44.000
0.00
0.00
43.18
3.85
2815
3234
5.132502
CCATTAGGTAAATGCATGTCAGGA
58.867
41.667
0.00
0.00
43.18
3.86
2816
3235
5.443185
CCATTAGGTAAATGCATGTCAGG
57.557
43.478
0.00
0.00
43.18
3.86
3108
3624
5.011023
TGTGTCGGTAGACCTCGATATACTA
59.989
44.000
0.00
0.00
46.51
1.82
3194
3710
9.042008
GTACGAACATATGTCAGATTAAATGGT
57.958
33.333
9.23
0.35
0.00
3.55
3451
3967
1.408683
GCAGGGATGGAGTGCATTACA
60.409
52.381
0.00
0.00
37.16
2.41
3523
4039
1.337387
GATTCGTCTAGGGAACGGGAG
59.663
57.143
2.99
0.00
0.00
4.30
3610
4129
3.552875
TCCTATTGAGACGTCGGAGAAT
58.447
45.455
10.46
9.33
39.69
2.40
3625
4144
3.489513
GCCGGGCCACCTCCTATT
61.490
66.667
8.12
0.00
33.28
1.73
3678
4197
0.250124
AATCAACGGCGTGTCCTTCA
60.250
50.000
15.70
0.00
0.00
3.02
3772
4297
2.810852
CTGGAAGTTCTTGACAGAAGCC
59.189
50.000
2.25
0.00
39.86
4.35
3775
4300
3.134623
TGAGCTGGAAGTTCTTGACAGAA
59.865
43.478
10.09
0.00
45.30
3.02
4009
4552
1.228245
AGCCATGACGGTTGCAACT
60.228
52.632
27.64
10.40
36.97
3.16
4089
4633
3.414272
GATGGCATCAGCGACACC
58.586
61.111
22.23
0.00
43.41
4.16
4106
4650
1.886861
CTCAGTTTTCGGGTGTCGCG
61.887
60.000
0.00
0.00
41.10
5.87
4112
4656
4.903045
TCTAATTCCTCAGTTTTCGGGT
57.097
40.909
0.00
0.00
0.00
5.28
4113
4657
4.636206
CCTTCTAATTCCTCAGTTTTCGGG
59.364
45.833
0.00
0.00
0.00
5.14
4207
4751
0.097499
TATCACGTACACAGCCGTCG
59.903
55.000
0.00
0.00
34.59
5.12
4250
4794
4.846137
GCAAATACATCGTCAGTGAACAAC
59.154
41.667
0.00
0.00
0.00
3.32
4274
4818
5.651530
AGTTATGAATGTACAGGTCACTCG
58.348
41.667
12.82
0.00
0.00
4.18
4291
4835
8.327429
GTTCAATTTCAAACACACCAAGTTATG
58.673
33.333
0.00
0.00
0.00
1.90
4356
4900
2.029666
CGATCCATCCCTGACGGC
59.970
66.667
0.00
0.00
0.00
5.68
4373
4917
4.610945
CAATCAAACACAAAGTCTGGTCC
58.389
43.478
0.00
0.00
0.00
4.46
4376
4920
4.311816
AGCAATCAAACACAAAGTCTGG
57.688
40.909
0.00
0.00
0.00
3.86
4584
5139
0.036388
TCGACCATGTCCCTTTCAGC
60.036
55.000
0.00
0.00
0.00
4.26
4733
5294
2.228059
TCTTTCTATCTACTCGGGGCG
58.772
52.381
0.00
0.00
0.00
6.13
4773
5350
1.402787
TCGATGTCATGAGCTAGCCA
58.597
50.000
12.13
9.78
0.00
4.75
4795
5372
0.392706
CCAGGGGCAAGGTTTTGAAC
59.607
55.000
0.00
0.00
36.36
3.18
4796
5373
0.263172
TCCAGGGGCAAGGTTTTGAA
59.737
50.000
0.00
0.00
36.36
2.69
4797
5374
0.178964
CTCCAGGGGCAAGGTTTTGA
60.179
55.000
0.00
0.00
36.36
2.69
4798
5375
1.820010
GCTCCAGGGGCAAGGTTTTG
61.820
60.000
6.37
0.00
37.36
2.44
4799
5376
1.533994
GCTCCAGGGGCAAGGTTTT
60.534
57.895
6.37
0.00
0.00
2.43
4800
5377
2.118294
GCTCCAGGGGCAAGGTTT
59.882
61.111
6.37
0.00
0.00
3.27
4801
5378
2.777960
TTGCTCCAGGGGCAAGGTT
61.778
57.895
24.02
0.00
43.50
3.50
4802
5379
3.185203
TTGCTCCAGGGGCAAGGT
61.185
61.111
24.02
0.00
43.50
3.50
4841
5418
1.733399
GACGTCGACAAGCCACTCC
60.733
63.158
17.16
0.00
0.00
3.85
4962
5540
1.167851
CGATTTCTTGCCAAGCAGGA
58.832
50.000
0.00
0.00
42.66
3.86
4963
5541
0.171903
CCGATTTCTTGCCAAGCAGG
59.828
55.000
0.00
0.00
40.61
4.85
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.