Multiple sequence alignment - TraesCS4A01G208700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G208700 chr4A 100.000 7094 0 0 1 7094 501967950 501960857 0.000000e+00 13101
1 TraesCS4A01G208700 chr4D 95.692 2716 76 12 1778 4478 89426746 89424057 0.000000e+00 4329
2 TraesCS4A01G208700 chr4D 94.150 1641 59 16 7 1637 89428338 89426725 0.000000e+00 2464
3 TraesCS4A01G208700 chr4D 95.518 1495 52 7 5609 7093 89422817 89421328 0.000000e+00 2375
4 TraesCS4A01G208700 chr4D 94.941 1107 30 9 4478 5574 89423900 89422810 0.000000e+00 1711
5 TraesCS4A01G208700 chr4B 94.612 2394 95 15 2102 4478 126327101 126324725 0.000000e+00 3675
6 TraesCS4A01G208700 chr4B 93.945 1635 50 17 7 1626 126328948 126327348 0.000000e+00 2425
7 TraesCS4A01G208700 chr4B 91.104 1495 68 17 5609 7094 126323110 126321672 0.000000e+00 1964
8 TraesCS4A01G208700 chr4B 93.503 785 25 8 4798 5574 126323869 126323103 0.000000e+00 1144
9 TraesCS4A01G208700 chr4B 97.205 322 9 0 4478 4799 126324477 126324156 4.840000e-151 545
10 TraesCS4A01G208700 chr4B 89.617 183 12 4 1899 2076 126327278 126327098 7.160000e-55 226
11 TraesCS4A01G208700 chr4B 90.244 82 6 2 1778 1857 126327356 126327275 9.730000e-19 106
12 TraesCS4A01G208700 chr6D 98.171 164 3 0 1625 1788 284851865 284851702 3.240000e-73 287
13 TraesCS4A01G208700 chr7B 99.359 156 1 0 1623 1778 712631889 712632044 4.190000e-72 283
14 TraesCS4A01G208700 chr7B 90.066 151 15 0 1627 1777 704279033 704278883 5.610000e-46 196
15 TraesCS4A01G208700 chr5B 100.000 151 0 0 1627 1777 9618176 9618026 5.420000e-71 279
16 TraesCS4A01G208700 chr5B 81.746 252 44 2 1201 1451 222367265 222367015 7.210000e-50 209
17 TraesCS4A01G208700 chr2B 100.000 151 0 0 1627 1777 400625574 400625424 5.420000e-71 279
18 TraesCS4A01G208700 chr2B 90.066 151 15 0 1627 1777 685741127 685740977 5.610000e-46 196
19 TraesCS4A01G208700 chr7A 99.338 151 1 0 1627 1777 519850906 519850756 2.520000e-69 274
20 TraesCS4A01G208700 chr3B 98.065 155 2 1 1627 1780 378720271 378720117 1.170000e-67 268
21 TraesCS4A01G208700 chr5D 81.746 252 44 2 1201 1451 209309672 209309422 7.210000e-50 209
22 TraesCS4A01G208700 chr5A 81.349 252 45 2 1201 1451 270177652 270177402 3.350000e-48 204
23 TraesCS4A01G208700 chr2A 89.744 156 15 1 1627 1782 175462268 175462422 1.560000e-46 198


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G208700 chr4A 501960857 501967950 7093 True 13101.000000 13101 100.00000 1 7094 1 chr4A.!!$R1 7093
1 TraesCS4A01G208700 chr4D 89421328 89428338 7010 True 2719.750000 4329 95.07525 7 7093 4 chr4D.!!$R1 7086
2 TraesCS4A01G208700 chr4B 126321672 126328948 7276 True 1440.714286 3675 92.89000 7 7094 7 chr4B.!!$R1 7087

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
258 259 0.761802 AAAGGGGCGGAAATTTGCAA 59.238 45.0 10.49 0.0 0.00 4.08 F
1723 1757 0.104855 ATATGCACGGACGCACTGAT 59.895 50.0 0.00 0.0 46.56 2.90 F
1760 1794 0.100682 AATCGTCTGCTATGCGTCGT 59.899 50.0 0.00 0.0 0.00 4.34 F
1777 1811 0.179116 CGTGTGCATAGCAGCTCTCT 60.179 55.0 0.00 0.0 40.08 3.10 F
1868 1904 0.539901 ATGATACTCCCTCCGTCCCG 60.540 60.0 0.00 0.0 0.00 5.14 F
2485 2523 0.791983 CTTGCGCTGCTGTTTGATCG 60.792 55.0 9.73 0.0 0.00 3.69 F
2679 2717 1.123928 ACATACTGCTAGCCTGTCCC 58.876 55.0 13.29 0.0 0.00 4.46 F
4060 4113 0.750249 TCACTCTGGCGAAACAGTCA 59.250 50.0 0.00 0.0 39.48 3.41 F
4568 4870 0.975887 ATGGGGTCGCATTTTTGCTT 59.024 45.0 0.00 0.0 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1741 1775 0.100682 ACGACGCATAGCAGACGATT 59.899 50.000 0.00 0.00 0.00 3.34 R
2679 2717 1.209019 AGAATGCTGGGCTCAGTAGTG 59.791 52.381 16.66 0.00 42.78 2.74 R
3208 3246 1.699634 TGTCTCCTCTGGTTTCTTGGG 59.300 52.381 0.00 0.00 0.00 4.12 R
3287 3325 2.028020 AGATCTTCAACGTTGACCCCTC 60.028 50.000 29.74 21.45 36.83 4.30 R
3363 3401 4.576463 TGGAGAAGAGCACTGAAGTTTTTC 59.424 41.667 0.00 0.00 0.00 2.29 R
3926 3979 2.237143 TCAGGACCATTCACATCAGGAC 59.763 50.000 0.00 0.00 0.00 3.85 R
4568 4870 1.755395 GCCATGGGATCAGCTTGCA 60.755 57.895 15.13 0.00 0.00 4.08 R
5595 6192 0.181587 TCCGTTTCTTGCAGGGAACA 59.818 50.000 19.06 0.00 0.00 3.18 R
6343 6949 0.247419 CAGATGTTGATGCGCACGAC 60.247 55.000 14.90 17.03 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
251 252 1.534476 GGGGAAAAAGGGGCGGAAA 60.534 57.895 0.00 0.00 0.00 3.13
258 259 0.761802 AAAGGGGCGGAAATTTGCAA 59.238 45.000 10.49 0.00 0.00 4.08
260 261 0.831711 AGGGGCGGAAATTTGCAACT 60.832 50.000 10.49 0.00 0.00 3.16
264 265 2.262211 GGCGGAAATTTGCAACTGATC 58.738 47.619 10.49 0.00 0.00 2.92
329 330 1.129917 TTACCAAACAGGGTGTCGGA 58.870 50.000 0.00 0.00 42.39 4.55
342 343 6.183360 ACAGGGTGTCGGAAAAATACAAAAAT 60.183 34.615 0.00 0.00 0.00 1.82
343 344 7.014422 ACAGGGTGTCGGAAAAATACAAAAATA 59.986 33.333 0.00 0.00 0.00 1.40
381 382 3.203040 AGATTACCAATCAGGGAACCAGG 59.797 47.826 2.03 0.00 45.14 4.45
383 384 6.534298 AGATTACCAATCAGGGAACCAGGAA 61.534 44.000 0.00 0.00 45.14 3.36
443 448 8.365399 TGGTGCTATATGTATTCTCGAAAAAG 57.635 34.615 0.00 0.00 0.00 2.27
471 476 3.063997 CGCATAGAAATGGTCACAGGAAC 59.936 47.826 0.00 0.00 33.38 3.62
635 640 1.619827 TCGTTACCCTTGGTGGTACAG 59.380 52.381 0.00 0.00 41.80 2.74
725 730 4.951963 GAGAAGGATCGGCCGGCG 62.952 72.222 27.83 16.23 43.43 6.46
855 860 2.118404 CGCTCTCGGCTCTCCTTCT 61.118 63.158 0.00 0.00 39.13 2.85
882 888 1.291939 AGCTTTTATCCCAATGGGCCT 59.708 47.619 14.88 5.92 43.94 5.19
883 889 1.688735 GCTTTTATCCCAATGGGCCTC 59.311 52.381 14.88 0.00 43.94 4.70
884 890 2.690936 GCTTTTATCCCAATGGGCCTCT 60.691 50.000 14.88 0.47 43.94 3.69
885 891 3.646534 CTTTTATCCCAATGGGCCTCTT 58.353 45.455 14.88 0.00 43.94 2.85
914 920 1.237285 CGTTCAGGAGGCCACTTTGG 61.237 60.000 5.01 0.00 41.55 3.28
924 940 3.922426 CCACTTTGGGCCCATATCA 57.078 52.632 29.23 7.80 32.67 2.15
925 941 1.696063 CCACTTTGGGCCCATATCAG 58.304 55.000 29.23 20.92 32.67 2.90
926 942 1.063717 CCACTTTGGGCCCATATCAGT 60.064 52.381 29.23 21.60 32.67 3.41
927 943 2.301346 CACTTTGGGCCCATATCAGTC 58.699 52.381 29.23 0.00 0.00 3.51
928 944 2.092212 CACTTTGGGCCCATATCAGTCT 60.092 50.000 29.23 1.73 0.00 3.24
929 945 3.136443 CACTTTGGGCCCATATCAGTCTA 59.864 47.826 29.23 3.48 0.00 2.59
930 946 3.983410 ACTTTGGGCCCATATCAGTCTAT 59.017 43.478 29.23 0.62 0.00 1.98
938 954 4.220821 GCCCATATCAGTCTATCTTTCGGA 59.779 45.833 0.00 0.00 0.00 4.55
945 961 6.280855 TCAGTCTATCTTTCGGATCAACAA 57.719 37.500 0.00 0.00 35.98 2.83
962 983 1.927527 AACAGAGAGCCCAGCCCAT 60.928 57.895 0.00 0.00 0.00 4.00
966 987 1.153005 GAGAGCCCAGCCCATGAAG 60.153 63.158 0.00 0.00 0.00 3.02
1086 1107 1.202687 CCGGTGATCACAGCCATGTAT 60.203 52.381 26.47 0.00 40.87 2.29
1563 1593 4.740268 TCAGAATGCATTGCAGAAATGTC 58.260 39.130 18.59 7.18 46.37 3.06
1593 1627 1.750193 TATGCTGTTGCCTAGGTTGC 58.250 50.000 11.31 8.42 38.71 4.17
1626 1660 1.564348 ACAGTGGGGTGTTATGGGATC 59.436 52.381 0.00 0.00 0.00 3.36
1627 1661 0.837272 AGTGGGGTGTTATGGGATCG 59.163 55.000 0.00 0.00 0.00 3.69
1628 1662 0.834612 GTGGGGTGTTATGGGATCGA 59.165 55.000 0.00 0.00 0.00 3.59
1629 1663 1.210967 GTGGGGTGTTATGGGATCGAA 59.789 52.381 0.00 0.00 0.00 3.71
1630 1664 1.916874 TGGGGTGTTATGGGATCGAAA 59.083 47.619 0.00 0.00 0.00 3.46
1631 1665 2.294979 GGGGTGTTATGGGATCGAAAC 58.705 52.381 0.00 0.00 0.00 2.78
1632 1666 2.092592 GGGGTGTTATGGGATCGAAACT 60.093 50.000 0.00 0.00 0.00 2.66
1633 1667 2.943033 GGGTGTTATGGGATCGAAACTG 59.057 50.000 0.00 0.00 0.00 3.16
1634 1668 2.354821 GGTGTTATGGGATCGAAACTGC 59.645 50.000 0.00 0.00 0.00 4.40
1635 1669 3.270877 GTGTTATGGGATCGAAACTGCT 58.729 45.455 0.00 0.00 0.00 4.24
1636 1670 4.439057 GTGTTATGGGATCGAAACTGCTA 58.561 43.478 0.00 0.00 0.00 3.49
1637 1671 5.057149 GTGTTATGGGATCGAAACTGCTAT 58.943 41.667 0.00 0.00 0.00 2.97
1638 1672 5.050091 GTGTTATGGGATCGAAACTGCTATG 60.050 44.000 0.00 0.00 0.00 2.23
1639 1673 1.953559 TGGGATCGAAACTGCTATGC 58.046 50.000 0.00 0.00 0.00 3.14
1640 1674 1.209261 TGGGATCGAAACTGCTATGCA 59.791 47.619 0.00 0.00 36.92 3.96
1666 1700 3.128259 CACTACATGCACGACAGCT 57.872 52.632 0.00 0.00 34.99 4.24
1667 1701 0.717784 CACTACATGCACGACAGCTG 59.282 55.000 13.48 13.48 34.99 4.24
1668 1702 1.016130 ACTACATGCACGACAGCTGC 61.016 55.000 15.27 5.81 34.99 5.25
1672 1706 4.583866 TGCACGACAGCTGCACGA 62.584 61.111 30.57 13.14 39.76 4.35
1673 1707 3.114616 GCACGACAGCTGCACGAT 61.115 61.111 30.57 17.14 34.56 3.73
1674 1708 2.774126 CACGACAGCTGCACGATG 59.226 61.111 30.57 22.23 34.52 3.84
1675 1709 2.023771 CACGACAGCTGCACGATGT 61.024 57.895 30.57 13.14 46.62 3.06
1678 1712 4.777384 ACAGCTGCACGATGTCAA 57.223 50.000 15.27 0.00 37.86 3.18
1679 1713 3.238232 ACAGCTGCACGATGTCAAT 57.762 47.368 15.27 0.00 37.86 2.57
1680 1714 1.081892 ACAGCTGCACGATGTCAATC 58.918 50.000 15.27 0.00 37.86 2.67
1681 1715 1.338484 ACAGCTGCACGATGTCAATCT 60.338 47.619 15.27 0.00 37.86 2.40
1682 1716 2.094026 ACAGCTGCACGATGTCAATCTA 60.094 45.455 15.27 0.00 37.86 1.98
1683 1717 2.538861 CAGCTGCACGATGTCAATCTAG 59.461 50.000 0.00 0.00 0.00 2.43
1684 1718 1.260033 GCTGCACGATGTCAATCTAGC 59.740 52.381 0.00 0.00 33.38 3.42
1685 1719 1.863454 CTGCACGATGTCAATCTAGCC 59.137 52.381 0.00 0.00 32.39 3.93
1686 1720 1.206849 TGCACGATGTCAATCTAGCCA 59.793 47.619 0.00 0.00 32.39 4.75
1687 1721 2.158914 TGCACGATGTCAATCTAGCCAT 60.159 45.455 0.00 0.00 32.39 4.40
1688 1722 2.478134 GCACGATGTCAATCTAGCCATC 59.522 50.000 0.00 0.00 0.00 3.51
1689 1723 3.801638 GCACGATGTCAATCTAGCCATCT 60.802 47.826 0.00 0.00 33.24 2.90
1690 1724 3.739810 CACGATGTCAATCTAGCCATCTG 59.260 47.826 0.00 0.00 33.24 2.90
1691 1725 3.386078 ACGATGTCAATCTAGCCATCTGT 59.614 43.478 0.00 0.00 33.24 3.41
1692 1726 4.141846 ACGATGTCAATCTAGCCATCTGTT 60.142 41.667 0.00 0.00 33.24 3.16
1693 1727 4.210746 CGATGTCAATCTAGCCATCTGTTG 59.789 45.833 0.00 0.00 33.24 3.33
1694 1728 3.273434 TGTCAATCTAGCCATCTGTTGC 58.727 45.455 0.00 0.00 0.00 4.17
1695 1729 3.273434 GTCAATCTAGCCATCTGTTGCA 58.727 45.455 0.00 0.00 0.00 4.08
1696 1730 3.064545 GTCAATCTAGCCATCTGTTGCAC 59.935 47.826 0.00 0.00 0.00 4.57
1697 1731 3.054875 TCAATCTAGCCATCTGTTGCACT 60.055 43.478 0.00 0.00 0.00 4.40
1698 1732 3.641434 ATCTAGCCATCTGTTGCACTT 57.359 42.857 0.00 0.00 0.00 3.16
1699 1733 4.760530 ATCTAGCCATCTGTTGCACTTA 57.239 40.909 0.00 0.00 0.00 2.24
1700 1734 4.128925 TCTAGCCATCTGTTGCACTTAG 57.871 45.455 0.00 0.00 0.00 2.18
1701 1735 3.769300 TCTAGCCATCTGTTGCACTTAGA 59.231 43.478 0.00 0.00 0.00 2.10
1702 1736 3.641434 AGCCATCTGTTGCACTTAGAT 57.359 42.857 0.00 0.00 0.00 1.98
1703 1737 4.760530 AGCCATCTGTTGCACTTAGATA 57.239 40.909 6.30 0.00 30.43 1.98
1704 1738 5.102953 AGCCATCTGTTGCACTTAGATAA 57.897 39.130 6.30 0.00 30.43 1.75
1705 1739 5.688807 AGCCATCTGTTGCACTTAGATAAT 58.311 37.500 6.30 0.00 30.43 1.28
1706 1740 6.830912 AGCCATCTGTTGCACTTAGATAATA 58.169 36.000 6.30 0.00 30.43 0.98
1707 1741 7.456725 AGCCATCTGTTGCACTTAGATAATAT 58.543 34.615 6.30 0.00 30.43 1.28
1708 1742 7.389884 AGCCATCTGTTGCACTTAGATAATATG 59.610 37.037 6.30 0.00 30.43 1.78
1709 1743 7.524912 CCATCTGTTGCACTTAGATAATATGC 58.475 38.462 6.30 0.00 36.81 3.14
1710 1744 7.173735 CCATCTGTTGCACTTAGATAATATGCA 59.826 37.037 6.30 0.00 44.19 3.96
1711 1745 7.482654 TCTGTTGCACTTAGATAATATGCAC 57.517 36.000 9.84 7.39 45.45 4.57
1712 1746 6.200854 TCTGTTGCACTTAGATAATATGCACG 59.799 38.462 9.84 0.00 45.45 5.34
1713 1747 5.236263 TGTTGCACTTAGATAATATGCACGG 59.764 40.000 9.84 0.00 45.45 4.94
1714 1748 5.208463 TGCACTTAGATAATATGCACGGA 57.792 39.130 0.00 0.00 41.18 4.69
1715 1749 4.988540 TGCACTTAGATAATATGCACGGAC 59.011 41.667 0.00 0.00 41.18 4.79
1716 1750 4.090066 GCACTTAGATAATATGCACGGACG 59.910 45.833 0.00 0.00 36.30 4.79
1717 1751 4.090066 CACTTAGATAATATGCACGGACGC 59.910 45.833 0.00 0.00 0.00 5.19
1719 1753 2.404215 AGATAATATGCACGGACGCAC 58.596 47.619 0.00 0.00 46.56 5.34
1720 1754 2.035961 AGATAATATGCACGGACGCACT 59.964 45.455 0.00 0.00 46.56 4.40
1721 1755 1.566404 TAATATGCACGGACGCACTG 58.434 50.000 0.00 0.00 46.56 3.66
1722 1756 0.108377 AATATGCACGGACGCACTGA 60.108 50.000 0.00 0.00 46.56 3.41
1723 1757 0.104855 ATATGCACGGACGCACTGAT 59.895 50.000 0.00 0.00 46.56 2.90
1724 1758 0.805711 TATGCACGGACGCACTGATG 60.806 55.000 0.00 0.00 46.56 3.07
1725 1759 2.738521 GCACGGACGCACTGATGT 60.739 61.111 0.00 0.00 0.00 3.06
1726 1760 3.015293 GCACGGACGCACTGATGTG 62.015 63.158 0.00 0.00 46.37 3.21
1737 1771 1.325640 CACTGATGTGCTGTATCGTGC 59.674 52.381 0.00 0.00 37.38 5.34
1738 1772 1.066929 ACTGATGTGCTGTATCGTGCA 60.067 47.619 0.00 0.00 36.79 4.57
1745 1779 1.393196 TGCTGTATCGTGCACAAATCG 59.607 47.619 18.64 1.94 33.94 3.34
1746 1780 1.393539 GCTGTATCGTGCACAAATCGT 59.606 47.619 18.64 0.00 0.00 3.73
1747 1781 2.534939 GCTGTATCGTGCACAAATCGTC 60.535 50.000 18.64 5.17 0.00 4.20
1748 1782 2.923655 CTGTATCGTGCACAAATCGTCT 59.076 45.455 18.64 0.00 0.00 4.18
1749 1783 2.666022 TGTATCGTGCACAAATCGTCTG 59.334 45.455 18.64 0.00 0.00 3.51
1750 1784 0.443869 ATCGTGCACAAATCGTCTGC 59.556 50.000 18.64 0.00 0.00 4.26
1751 1785 0.599991 TCGTGCACAAATCGTCTGCT 60.600 50.000 18.64 0.00 0.00 4.24
1752 1786 1.067693 CGTGCACAAATCGTCTGCTA 58.932 50.000 18.64 0.00 0.00 3.49
1753 1787 1.660607 CGTGCACAAATCGTCTGCTAT 59.339 47.619 18.64 0.00 0.00 2.97
1754 1788 2.535534 CGTGCACAAATCGTCTGCTATG 60.536 50.000 18.64 0.00 0.00 2.23
1755 1789 1.398041 TGCACAAATCGTCTGCTATGC 59.602 47.619 0.00 0.00 0.00 3.14
1756 1790 1.593070 GCACAAATCGTCTGCTATGCG 60.593 52.381 0.00 0.00 0.00 4.73
1757 1791 1.660607 CACAAATCGTCTGCTATGCGT 59.339 47.619 0.00 0.00 0.00 5.24
1758 1792 1.927174 ACAAATCGTCTGCTATGCGTC 59.073 47.619 0.00 0.00 0.00 5.19
1759 1793 1.071894 CAAATCGTCTGCTATGCGTCG 60.072 52.381 0.00 0.00 0.00 5.12
1760 1794 0.100682 AATCGTCTGCTATGCGTCGT 59.899 50.000 0.00 0.00 0.00 4.34
1761 1795 0.592500 ATCGTCTGCTATGCGTCGTG 60.593 55.000 0.00 0.00 0.00 4.35
1762 1796 1.514228 CGTCTGCTATGCGTCGTGT 60.514 57.895 0.00 0.00 0.00 4.49
1763 1797 1.733416 CGTCTGCTATGCGTCGTGTG 61.733 60.000 0.00 0.00 0.00 3.82
1764 1798 1.805539 TCTGCTATGCGTCGTGTGC 60.806 57.895 0.00 0.00 0.00 4.57
1770 1804 2.048690 TGCGTCGTGTGCATAGCA 60.049 55.556 0.00 0.00 37.44 3.49
1771 1805 2.094066 TGCGTCGTGTGCATAGCAG 61.094 57.895 0.00 0.00 40.08 4.24
1772 1806 2.697425 CGTCGTGTGCATAGCAGC 59.303 61.111 0.00 0.00 40.08 5.25
1773 1807 1.807165 CGTCGTGTGCATAGCAGCT 60.807 57.895 0.00 0.00 40.08 4.24
1774 1808 1.746727 CGTCGTGTGCATAGCAGCTC 61.747 60.000 0.00 0.00 40.08 4.09
1775 1809 0.459237 GTCGTGTGCATAGCAGCTCT 60.459 55.000 0.00 0.00 40.08 4.09
1776 1810 0.179127 TCGTGTGCATAGCAGCTCTC 60.179 55.000 0.00 0.00 40.08 3.20
1777 1811 0.179116 CGTGTGCATAGCAGCTCTCT 60.179 55.000 0.00 0.00 40.08 3.10
1778 1812 1.738365 CGTGTGCATAGCAGCTCTCTT 60.738 52.381 0.00 0.00 40.08 2.85
1779 1813 2.480244 CGTGTGCATAGCAGCTCTCTTA 60.480 50.000 0.00 0.00 40.08 2.10
1780 1814 3.726607 GTGTGCATAGCAGCTCTCTTAT 58.273 45.455 0.00 0.00 40.08 1.73
1781 1815 3.493877 GTGTGCATAGCAGCTCTCTTATG 59.506 47.826 0.00 0.00 40.08 1.90
1782 1816 3.065655 GTGCATAGCAGCTCTCTTATGG 58.934 50.000 0.00 0.00 40.08 2.74
1783 1817 2.038164 TGCATAGCAGCTCTCTTATGGG 59.962 50.000 0.00 0.00 33.32 4.00
1784 1818 2.301296 GCATAGCAGCTCTCTTATGGGA 59.699 50.000 0.00 0.00 0.00 4.37
1785 1819 3.055240 GCATAGCAGCTCTCTTATGGGAT 60.055 47.826 0.00 0.00 0.00 3.85
1818 1853 5.010516 TGCTACAAGTTGCATTAATTGGTGT 59.989 36.000 1.81 0.00 36.48 4.16
1868 1904 0.539901 ATGATACTCCCTCCGTCCCG 60.540 60.000 0.00 0.00 0.00 5.14
1940 1976 6.321181 ACCGGATTGATATTTGTGCTAAATGT 59.679 34.615 9.46 3.68 0.00 2.71
2085 2122 9.823647 TCATCTCAGTTGACCTTAGAATTATTC 57.176 33.333 0.00 0.00 27.55 1.75
2086 2123 9.605275 CATCTCAGTTGACCTTAGAATTATTCA 57.395 33.333 7.74 0.00 27.55 2.57
2098 2135 7.661847 CCTTAGAATTATTCAGGCTTTATCGGT 59.338 37.037 7.74 0.00 0.00 4.69
2149 2186 6.326323 AGTTGGGGTCACTAAAACATGAAAAT 59.674 34.615 0.00 0.00 0.00 1.82
2429 2466 7.259088 AGTTAAATGGGACTCAGTTCTGTAT 57.741 36.000 0.00 0.00 35.18 2.29
2485 2523 0.791983 CTTGCGCTGCTGTTTGATCG 60.792 55.000 9.73 0.00 0.00 3.69
2679 2717 1.123928 ACATACTGCTAGCCTGTCCC 58.876 55.000 13.29 0.00 0.00 4.46
2681 2719 1.123928 ATACTGCTAGCCTGTCCCAC 58.876 55.000 13.29 0.00 0.00 4.61
2781 2819 3.492337 TCGGAAACATTTTAACCAGCCT 58.508 40.909 0.00 0.00 0.00 4.58
2982 3020 3.371965 TCTACCAGGTGATAGTCAACCC 58.628 50.000 0.76 0.00 33.71 4.11
3086 3124 1.137675 TGAGAAGCCACGATCATCCAG 59.862 52.381 0.00 0.00 0.00 3.86
3208 3246 2.689471 TCCATGAATGTACCATTGCAGC 59.311 45.455 0.00 0.00 0.00 5.25
3287 3325 5.452636 GGAGAGCACTAAACTCTTATCCTGG 60.453 48.000 0.00 0.00 44.50 4.45
3298 3336 1.139058 CTTATCCTGGAGGGGTCAACG 59.861 57.143 1.52 0.00 35.41 4.10
3312 3350 3.433615 GGGTCAACGTTGAAGATCTTCTG 59.566 47.826 31.20 21.46 39.21 3.02
3313 3351 4.307432 GGTCAACGTTGAAGATCTTCTGA 58.693 43.478 31.20 23.06 39.21 3.27
3314 3352 4.387256 GGTCAACGTTGAAGATCTTCTGAG 59.613 45.833 31.20 23.05 39.21 3.35
3576 3629 8.970859 ATATATTGTCTCCAGAACAAAGGAAG 57.029 34.615 0.00 0.00 32.57 3.46
3745 3798 1.405821 CGGAGGCTCAAGGTACTACTG 59.594 57.143 17.69 0.00 38.49 2.74
3887 3940 1.737793 GGAAGGGCAACATAACAGACG 59.262 52.381 0.00 0.00 39.74 4.18
3926 3979 5.066375 TGAAGAATTGTTCCACAACTGACAG 59.934 40.000 12.39 0.00 41.40 3.51
3986 4039 4.516698 CAGCACTAGTTTGTCAAATGACCT 59.483 41.667 10.83 4.00 44.15 3.85
4060 4113 0.750249 TCACTCTGGCGAAACAGTCA 59.250 50.000 0.00 0.00 39.48 3.41
4071 4124 3.423206 GCGAAACAGTCAAAATCAGCAAG 59.577 43.478 0.00 0.00 0.00 4.01
4072 4125 3.423206 CGAAACAGTCAAAATCAGCAAGC 59.577 43.478 0.00 0.00 0.00 4.01
4141 4194 2.263741 GCAGCAAGGTGGTGGTCAG 61.264 63.158 9.28 0.00 45.26 3.51
4159 4212 6.009589 TGGTCAGCTGGAAAATCAGATAAAA 58.990 36.000 15.13 0.00 36.93 1.52
4312 4365 7.232127 AGCAATATCTTTTAACCCATCATGGAG 59.768 37.037 4.75 0.00 40.96 3.86
4415 4468 3.713858 TGTTTGTGACATTGGCTTCAG 57.286 42.857 0.00 0.00 32.00 3.02
4420 4473 6.040278 TGTTTGTGACATTGGCTTCAGATTTA 59.960 34.615 0.00 0.00 32.00 1.40
4568 4870 0.975887 ATGGGGTCGCATTTTTGCTT 59.024 45.000 0.00 0.00 0.00 3.91
4665 4968 4.550422 CAGAAACATGACGAGAAGACTGA 58.450 43.478 0.00 0.00 0.00 3.41
4700 5003 6.260936 GCATAGTGGTAGTGTTTTGCTCATAT 59.739 38.462 0.00 0.00 0.00 1.78
4769 5072 5.885352 TGTTCTCCAACTTGTTTGAAGATCA 59.115 36.000 0.00 0.00 37.39 2.92
4813 5404 8.989131 TCCTGATTACTAGTAACCAATAAGCTT 58.011 33.333 17.45 3.48 0.00 3.74
4822 5413 6.010219 AGTAACCAATAAGCTTCATTGTGGT 58.990 36.000 0.00 7.89 32.55 4.16
4823 5414 5.806654 AACCAATAAGCTTCATTGTGGTT 57.193 34.783 18.87 18.87 32.55 3.67
4824 5415 5.138125 ACCAATAAGCTTCATTGTGGTTG 57.862 39.130 0.00 2.18 32.55 3.77
4825 5416 4.588528 ACCAATAAGCTTCATTGTGGTTGT 59.411 37.500 0.00 2.73 32.55 3.32
4826 5417 5.163513 CCAATAAGCTTCATTGTGGTTGTC 58.836 41.667 0.00 0.00 32.55 3.18
4827 5418 5.278907 CCAATAAGCTTCATTGTGGTTGTCA 60.279 40.000 0.00 0.00 32.55 3.58
4828 5419 6.215121 CAATAAGCTTCATTGTGGTTGTCAA 58.785 36.000 0.00 0.00 0.00 3.18
4829 5420 3.715628 AGCTTCATTGTGGTTGTCAAC 57.284 42.857 7.20 7.20 0.00 3.18
4845 5436 5.745312 TGTCAACTTGTCATATCTGGAGT 57.255 39.130 0.00 0.00 0.00 3.85
5164 5760 8.615360 ACTGGGTATGATATCTATATGCTTGT 57.385 34.615 3.98 0.00 0.00 3.16
5165 5761 8.481314 ACTGGGTATGATATCTATATGCTTGTG 58.519 37.037 3.98 0.00 0.00 3.33
5166 5762 8.608185 TGGGTATGATATCTATATGCTTGTGA 57.392 34.615 3.98 0.00 0.00 3.58
5167 5763 9.045745 TGGGTATGATATCTATATGCTTGTGAA 57.954 33.333 3.98 0.00 0.00 3.18
5168 5764 9.890629 GGGTATGATATCTATATGCTTGTGAAA 57.109 33.333 3.98 0.00 0.00 2.69
5213 5810 8.721478 CCAGGTCCAAACTTATTATATTCATCG 58.279 37.037 0.00 0.00 0.00 3.84
5235 5832 6.849502 TCGAGTTACAGTACAGTTATTCCAG 58.150 40.000 0.00 0.00 0.00 3.86
5412 6009 1.273606 TCTCAAAGGCCTTGACGAGAG 59.726 52.381 26.92 22.71 39.20 3.20
5434 6031 8.402798 AGAGACATATCCATCAGTTAGTACAG 57.597 38.462 0.00 0.00 0.00 2.74
5531 6128 4.411540 AGAGAGGAACATGTGCTCCATTAT 59.588 41.667 17.04 1.61 45.58 1.28
5575 6172 3.930634 AGTTCTCTTGCAAATGGAAGC 57.069 42.857 9.52 0.00 42.29 3.86
5576 6173 3.225104 AGTTCTCTTGCAAATGGAAGCA 58.775 40.909 9.52 0.00 42.29 3.91
5577 6174 3.005155 AGTTCTCTTGCAAATGGAAGCAC 59.995 43.478 9.52 6.58 42.29 4.40
5578 6175 2.585330 TCTCTTGCAAATGGAAGCACA 58.415 42.857 9.52 0.00 42.29 4.57
5579 6176 2.957680 TCTCTTGCAAATGGAAGCACAA 59.042 40.909 9.52 0.00 42.29 3.33
5580 6177 3.054878 CTCTTGCAAATGGAAGCACAAC 58.945 45.455 9.52 0.00 42.29 3.32
5581 6178 2.137523 CTTGCAAATGGAAGCACAACC 58.862 47.619 0.00 0.00 41.05 3.77
5582 6179 1.117994 TGCAAATGGAAGCACAACCA 58.882 45.000 0.00 0.00 40.57 3.67
5584 6181 2.896044 TGCAAATGGAAGCACAACCATA 59.104 40.909 0.00 0.00 44.79 2.74
5585 6182 3.514706 TGCAAATGGAAGCACAACCATAT 59.485 39.130 0.00 0.00 44.79 1.78
5586 6183 4.114794 GCAAATGGAAGCACAACCATATC 58.885 43.478 0.00 0.00 44.79 1.63
5587 6184 4.381825 GCAAATGGAAGCACAACCATATCA 60.382 41.667 0.00 0.00 44.79 2.15
5588 6185 5.722263 CAAATGGAAGCACAACCATATCAA 58.278 37.500 0.00 0.00 44.79 2.57
5589 6186 5.587388 AATGGAAGCACAACCATATCAAG 57.413 39.130 0.00 0.00 44.79 3.02
5590 6187 4.032960 TGGAAGCACAACCATATCAAGT 57.967 40.909 0.00 0.00 0.00 3.16
5591 6188 5.172687 TGGAAGCACAACCATATCAAGTA 57.827 39.130 0.00 0.00 0.00 2.24
5592 6189 5.565509 TGGAAGCACAACCATATCAAGTAA 58.434 37.500 0.00 0.00 0.00 2.24
5593 6190 5.647658 TGGAAGCACAACCATATCAAGTAAG 59.352 40.000 0.00 0.00 0.00 2.34
5594 6191 5.648092 GGAAGCACAACCATATCAAGTAAGT 59.352 40.000 0.00 0.00 0.00 2.24
5595 6192 6.151144 GGAAGCACAACCATATCAAGTAAGTT 59.849 38.462 0.00 0.00 0.00 2.66
5596 6193 6.500684 AGCACAACCATATCAAGTAAGTTG 57.499 37.500 0.00 0.00 36.99 3.16
5597 6194 6.003950 AGCACAACCATATCAAGTAAGTTGT 58.996 36.000 0.00 0.00 41.10 3.32
5598 6195 6.490040 AGCACAACCATATCAAGTAAGTTGTT 59.510 34.615 3.74 0.00 39.70 2.83
5599 6196 6.801862 GCACAACCATATCAAGTAAGTTGTTC 59.198 38.462 3.74 0.00 39.70 3.18
5600 6197 7.305474 CACAACCATATCAAGTAAGTTGTTCC 58.695 38.462 3.74 0.00 39.70 3.62
5601 6198 6.433093 ACAACCATATCAAGTAAGTTGTTCCC 59.567 38.462 0.00 0.00 39.15 3.97
5602 6199 6.388619 ACCATATCAAGTAAGTTGTTCCCT 57.611 37.500 0.00 0.00 37.43 4.20
5603 6200 6.180472 ACCATATCAAGTAAGTTGTTCCCTG 58.820 40.000 0.00 0.00 37.43 4.45
5604 6201 5.066505 CCATATCAAGTAAGTTGTTCCCTGC 59.933 44.000 0.00 0.00 37.43 4.85
5605 6202 3.569194 TCAAGTAAGTTGTTCCCTGCA 57.431 42.857 0.00 0.00 37.43 4.41
5606 6203 3.892284 TCAAGTAAGTTGTTCCCTGCAA 58.108 40.909 0.00 0.00 37.43 4.08
5607 6204 3.882888 TCAAGTAAGTTGTTCCCTGCAAG 59.117 43.478 0.00 0.00 37.43 4.01
5611 6208 3.801114 AAGTTGTTCCCTGCAAGAAAC 57.199 42.857 0.61 0.00 34.07 2.78
5618 6215 1.028905 CCCTGCAAGAAACGGAAACA 58.971 50.000 0.00 0.00 34.07 2.83
5650 6247 0.968405 GCAAGGGCAATGAAGACCAA 59.032 50.000 0.00 0.00 40.05 3.67
5692 6289 0.322008 GGGAAGAGCTTGGTCCTGTG 60.322 60.000 10.17 0.00 0.00 3.66
5724 6321 3.198635 GGTGATCCTCATCCAGAAACTGA 59.801 47.826 0.00 0.00 32.44 3.41
5792 6389 3.608796 TCTGATGGTGAAATTCATGCGA 58.391 40.909 0.00 0.00 0.00 5.10
5881 6478 2.373169 ACAAGCAAGAAGAGACCCATCA 59.627 45.455 0.00 0.00 0.00 3.07
5978 6575 0.531532 CAAGGCGGAATGCTCTCGAT 60.532 55.000 0.00 0.00 45.43 3.59
6157 6763 8.720909 TGTCATTATTAACATCAACACGTTTG 57.279 30.769 0.00 0.00 0.00 2.93
6266 6872 7.615403 TGCATGTCTATATAGAGGATTTGGTC 58.385 38.462 12.87 0.00 32.01 4.02
6318 6924 4.240888 GCTTGCGATCATCTATGCTTCTA 58.759 43.478 0.00 0.00 0.00 2.10
6337 6943 1.676248 ACACCCAGCCCTACCAATTA 58.324 50.000 0.00 0.00 0.00 1.40
6348 6954 2.102588 CCTACCAATTAGGGGAGTCGTG 59.897 54.545 0.00 0.00 43.71 4.35
6405 7012 2.565841 ACAAATCTTGCCCTAGATCGC 58.434 47.619 0.00 0.00 33.81 4.58
6421 7028 0.690192 TCGCTCCCACTCCATTCAAA 59.310 50.000 0.00 0.00 0.00 2.69
6470 7077 3.850273 GCTGCTCATTTTTCACATCTTCG 59.150 43.478 0.00 0.00 0.00 3.79
6481 7088 2.486592 TCACATCTTCGTCGCAACTAGA 59.513 45.455 0.00 0.00 0.00 2.43
6488 7095 1.135112 TCGTCGCAACTAGACATGCAT 60.135 47.619 16.14 0.00 42.68 3.96
6504 7111 4.408694 CATGCATGCATGTTACGATATGG 58.591 43.478 40.30 19.14 46.20 2.74
6532 7139 1.968493 GATTGCCATCCAGCATTCCAT 59.032 47.619 0.00 0.00 43.64 3.41
6630 7237 1.136828 ACCTCCGCCATATGCCTAAA 58.863 50.000 0.00 0.00 36.24 1.85
6646 7253 3.616317 GCCTAAATTTCAAACGGCATGGT 60.616 43.478 0.00 0.00 37.48 3.55
6647 7254 3.925913 CCTAAATTTCAAACGGCATGGTG 59.074 43.478 0.00 0.00 0.00 4.17
6688 7295 8.919777 AACTACTAAAAGACTAAAACCATGCT 57.080 30.769 0.00 0.00 0.00 3.79
6746 7353 0.546122 ACCTCTGCTGTGTTGGTTGA 59.454 50.000 0.00 0.00 0.00 3.18
6804 7411 1.135689 CGTTGCATAAAGACCACTGCC 60.136 52.381 0.00 0.00 33.70 4.85
6860 7467 4.109050 TGAAAAATCACTGAAACAACGCC 58.891 39.130 0.00 0.00 0.00 5.68
6877 7484 1.486439 GCCAACCACACACAATTTCG 58.514 50.000 0.00 0.00 0.00 3.46
6955 7562 3.436015 CACTCATCTTGCTCAACTCCAAG 59.564 47.826 0.00 0.00 39.74 3.61
7011 7618 5.233988 GGCTCTGATTGCCTAATAGTACAG 58.766 45.833 0.00 0.00 46.38 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.400213 TGATCCTGTGTGGGTGGAAC 59.600 55.000 0.00 0.00 36.20 3.62
218 219 2.125310 CCCAACATGCGGACGCTA 60.125 61.111 18.04 4.87 42.51 4.26
236 237 1.804151 GCAAATTTCCGCCCCTTTTTC 59.196 47.619 0.00 0.00 0.00 2.29
264 265 1.103803 TCCATTCCTCTCGGAGAACG 58.896 55.000 9.32 2.49 41.25 3.95
381 382 9.140874 AGAAGATTTCTATGGGGAATTTCATTC 57.859 33.333 0.00 0.00 38.49 2.67
383 384 9.498039 AAAGAAGATTTCTATGGGGAATTTCAT 57.502 29.630 0.00 0.00 39.61 2.57
414 415 8.575649 TTCGAGAATACATATAGCACCATCTA 57.424 34.615 0.00 0.00 0.00 1.98
416 417 8.534333 TTTTCGAGAATACATATAGCACCATC 57.466 34.615 0.00 0.00 0.00 3.51
417 418 8.902540 TTTTTCGAGAATACATATAGCACCAT 57.097 30.769 0.00 0.00 0.00 3.55
418 419 8.201464 TCTTTTTCGAGAATACATATAGCACCA 58.799 33.333 0.00 0.00 0.00 4.17
419 420 8.589335 TCTTTTTCGAGAATACATATAGCACC 57.411 34.615 0.00 0.00 0.00 5.01
443 448 4.335315 TGTGACCATTTCTATGCGGAATTC 59.665 41.667 0.00 0.00 0.00 2.17
447 452 2.419990 CCTGTGACCATTTCTATGCGGA 60.420 50.000 0.00 0.00 0.00 5.54
471 476 6.467047 CGATTTTCCTTCAGATGAATGTTTCG 59.533 38.462 0.00 0.00 33.01 3.46
635 640 1.084370 CCGCTTCCACAATCTCGACC 61.084 60.000 0.00 0.00 0.00 4.79
838 843 0.534873 AAAGAAGGAGAGCCGAGAGC 59.465 55.000 0.00 0.00 44.25 4.09
839 844 1.136110 GGAAAGAAGGAGAGCCGAGAG 59.864 57.143 0.00 0.00 39.96 3.20
855 860 4.711355 CCATTGGGATAAAAGCTCAGGAAA 59.289 41.667 0.00 0.00 35.59 3.13
882 888 2.307980 TCCTGAACGAGGAGGTAGAAGA 59.692 50.000 0.00 0.00 46.96 2.87
883 889 2.724454 TCCTGAACGAGGAGGTAGAAG 58.276 52.381 0.00 0.00 46.96 2.85
884 890 2.893215 TCCTGAACGAGGAGGTAGAA 57.107 50.000 0.00 0.00 46.96 2.10
914 920 4.499183 CGAAAGATAGACTGATATGGGCC 58.501 47.826 0.00 0.00 0.00 5.80
921 937 6.471233 TGTTGATCCGAAAGATAGACTGAT 57.529 37.500 0.00 0.00 34.42 2.90
922 938 5.914898 TGTTGATCCGAAAGATAGACTGA 57.085 39.130 0.00 0.00 34.42 3.41
923 939 5.869344 TGTTGTTGATCCGAAAGATAGACTG 59.131 40.000 0.00 0.00 34.42 3.51
924 940 6.037786 TGTTGTTGATCCGAAAGATAGACT 57.962 37.500 0.00 0.00 34.42 3.24
925 941 6.100004 TCTGTTGTTGATCCGAAAGATAGAC 58.900 40.000 0.00 0.00 34.42 2.59
926 942 6.152831 TCTCTGTTGTTGATCCGAAAGATAGA 59.847 38.462 0.00 0.00 34.42 1.98
927 943 6.333416 TCTCTGTTGTTGATCCGAAAGATAG 58.667 40.000 0.00 0.00 34.42 2.08
928 944 6.280855 TCTCTGTTGTTGATCCGAAAGATA 57.719 37.500 0.00 0.00 34.42 1.98
929 945 5.152623 TCTCTGTTGTTGATCCGAAAGAT 57.847 39.130 0.00 0.00 38.17 2.40
930 946 4.560128 CTCTCTGTTGTTGATCCGAAAGA 58.440 43.478 0.00 0.00 0.00 2.52
938 954 1.612726 GCTGGGCTCTCTGTTGTTGAT 60.613 52.381 0.00 0.00 0.00 2.57
945 961 2.285969 ATGGGCTGGGCTCTCTGT 60.286 61.111 0.00 0.00 0.00 3.41
966 987 1.673168 AGAAGGATGAAGCCGAATGC 58.327 50.000 0.00 0.00 41.71 3.56
978 999 3.136641 TCTCCAGGGCTTAAGAAGGAT 57.863 47.619 6.67 0.00 0.00 3.24
1064 1085 3.635191 TGGCTGTGATCACCGGCA 61.635 61.111 32.90 32.90 45.68 5.69
1066 1087 0.177836 TACATGGCTGTGATCACCGG 59.822 55.000 22.85 15.92 36.79 5.28
1069 1090 3.003068 GCTTGATACATGGCTGTGATCAC 59.997 47.826 19.27 19.27 36.79 3.06
1195 1216 3.128188 CTCCTGCTGCTGCTGCTG 61.128 66.667 27.67 25.97 40.48 4.41
1196 1217 4.411981 CCTCCTGCTGCTGCTGCT 62.412 66.667 27.67 0.00 40.48 4.24
1197 1218 3.914579 TTCCTCCTGCTGCTGCTGC 62.915 63.158 22.51 22.51 40.48 5.25
1198 1219 1.303074 TTTCCTCCTGCTGCTGCTG 60.303 57.895 17.00 15.58 40.48 4.41
1199 1220 1.002379 CTTTCCTCCTGCTGCTGCT 60.002 57.895 17.00 0.00 40.48 4.24
1200 1221 2.698763 GCTTTCCTCCTGCTGCTGC 61.699 63.158 8.89 8.89 40.20 5.25
1563 1593 2.979813 GCAACAGCATAAAAACAGACGG 59.020 45.455 0.00 0.00 0.00 4.79
1593 1627 1.167851 CCACTGTGCCCAACTACATG 58.832 55.000 1.29 0.00 0.00 3.21
1648 1682 0.717784 CAGCTGTCGTGCATGTAGTG 59.282 55.000 5.25 4.17 34.99 2.74
1649 1683 1.016130 GCAGCTGTCGTGCATGTAGT 61.016 55.000 16.64 0.00 40.86 2.73
1650 1684 1.015607 TGCAGCTGTCGTGCATGTAG 61.016 55.000 16.64 7.15 45.96 2.74
1651 1685 1.005156 TGCAGCTGTCGTGCATGTA 60.005 52.632 16.64 0.00 45.96 2.29
1652 1686 2.281002 TGCAGCTGTCGTGCATGT 60.281 55.556 16.64 0.00 45.96 3.21
1656 1690 3.114616 ATCGTGCAGCTGTCGTGC 61.115 61.111 24.17 10.01 41.59 5.34
1657 1691 1.949015 GACATCGTGCAGCTGTCGTG 61.949 60.000 24.17 22.26 36.44 4.35
1658 1692 1.734477 GACATCGTGCAGCTGTCGT 60.734 57.895 24.17 14.00 36.44 4.34
1659 1693 1.284297 TTGACATCGTGCAGCTGTCG 61.284 55.000 16.64 19.39 46.01 4.35
1660 1694 1.061711 GATTGACATCGTGCAGCTGTC 59.938 52.381 16.64 13.62 44.02 3.51
1661 1695 1.081892 GATTGACATCGTGCAGCTGT 58.918 50.000 16.64 0.00 30.94 4.40
1662 1696 1.366679 AGATTGACATCGTGCAGCTG 58.633 50.000 10.11 10.11 34.17 4.24
1663 1697 2.819115 CTAGATTGACATCGTGCAGCT 58.181 47.619 0.00 0.00 34.17 4.24
1664 1698 1.260033 GCTAGATTGACATCGTGCAGC 59.740 52.381 0.00 0.00 34.61 5.25
1665 1699 1.863454 GGCTAGATTGACATCGTGCAG 59.137 52.381 0.00 0.00 35.52 4.41
1666 1700 1.206849 TGGCTAGATTGACATCGTGCA 59.793 47.619 0.00 0.00 35.52 4.57
1667 1701 1.939974 TGGCTAGATTGACATCGTGC 58.060 50.000 0.00 0.00 34.17 5.34
1672 1706 3.881688 GCAACAGATGGCTAGATTGACAT 59.118 43.478 0.00 0.00 38.59 3.06
1673 1707 3.273434 GCAACAGATGGCTAGATTGACA 58.727 45.455 0.00 0.00 0.00 3.58
1674 1708 3.064545 GTGCAACAGATGGCTAGATTGAC 59.935 47.826 0.00 0.00 36.32 3.18
1675 1709 3.054875 AGTGCAACAGATGGCTAGATTGA 60.055 43.478 0.00 0.00 41.43 2.57
1676 1710 3.276857 AGTGCAACAGATGGCTAGATTG 58.723 45.455 0.00 0.00 41.43 2.67
1677 1711 3.641434 AGTGCAACAGATGGCTAGATT 57.359 42.857 0.00 0.00 41.43 2.40
1678 1712 3.641434 AAGTGCAACAGATGGCTAGAT 57.359 42.857 0.00 0.00 41.43 1.98
1679 1713 3.769300 TCTAAGTGCAACAGATGGCTAGA 59.231 43.478 0.00 0.00 41.43 2.43
1680 1714 4.128925 TCTAAGTGCAACAGATGGCTAG 57.871 45.455 0.00 0.00 41.43 3.42
1681 1715 4.760530 ATCTAAGTGCAACAGATGGCTA 57.239 40.909 5.42 0.00 41.43 3.93
1682 1716 3.641434 ATCTAAGTGCAACAGATGGCT 57.359 42.857 5.42 0.00 41.43 4.75
1683 1717 7.524912 CATATTATCTAAGTGCAACAGATGGC 58.475 38.462 13.52 0.00 41.43 4.40
1684 1718 7.173735 TGCATATTATCTAAGTGCAACAGATGG 59.826 37.037 13.52 3.21 41.43 3.51
1685 1719 8.013947 GTGCATATTATCTAAGTGCAACAGATG 58.986 37.037 13.52 2.85 40.20 2.90
1686 1720 7.095481 CGTGCATATTATCTAAGTGCAACAGAT 60.095 37.037 11.85 9.98 40.20 2.90
1687 1721 6.200854 CGTGCATATTATCTAAGTGCAACAGA 59.799 38.462 11.85 0.00 40.20 3.41
1688 1722 6.357980 CGTGCATATTATCTAAGTGCAACAG 58.642 40.000 11.85 0.00 40.20 3.16
1689 1723 5.236263 CCGTGCATATTATCTAAGTGCAACA 59.764 40.000 11.85 0.00 40.20 3.33
1690 1724 5.465390 TCCGTGCATATTATCTAAGTGCAAC 59.535 40.000 11.85 7.72 40.20 4.17
1691 1725 5.465390 GTCCGTGCATATTATCTAAGTGCAA 59.535 40.000 11.85 0.00 40.20 4.08
1692 1726 4.988540 GTCCGTGCATATTATCTAAGTGCA 59.011 41.667 0.00 8.06 37.96 4.57
1693 1727 4.090066 CGTCCGTGCATATTATCTAAGTGC 59.910 45.833 0.00 0.00 33.80 4.40
1694 1728 4.090066 GCGTCCGTGCATATTATCTAAGTG 59.910 45.833 0.00 0.00 34.15 3.16
1695 1729 4.235360 GCGTCCGTGCATATTATCTAAGT 58.765 43.478 0.00 0.00 34.15 2.24
1696 1730 4.234574 TGCGTCCGTGCATATTATCTAAG 58.765 43.478 0.00 0.00 40.62 2.18
1697 1731 4.245845 TGCGTCCGTGCATATTATCTAA 57.754 40.909 0.00 0.00 40.62 2.10
1698 1732 3.926821 TGCGTCCGTGCATATTATCTA 57.073 42.857 0.00 0.00 40.62 1.98
1699 1733 2.812358 TGCGTCCGTGCATATTATCT 57.188 45.000 0.00 0.00 40.62 1.98
1707 1741 2.738139 CATCAGTGCGTCCGTGCA 60.738 61.111 0.00 0.00 43.95 4.57
1708 1742 2.738521 ACATCAGTGCGTCCGTGC 60.739 61.111 0.00 0.00 0.00 5.34
1709 1743 3.159070 CACATCAGTGCGTCCGTG 58.841 61.111 0.00 0.00 39.21 4.94
1718 1752 1.066929 TGCACGATACAGCACATCAGT 60.067 47.619 0.00 0.00 35.51 3.41
1719 1753 1.643880 TGCACGATACAGCACATCAG 58.356 50.000 0.00 0.00 35.51 2.90
1720 1754 3.830679 TGCACGATACAGCACATCA 57.169 47.368 0.00 0.00 35.51 3.07
1725 1759 1.393196 CGATTTGTGCACGATACAGCA 59.607 47.619 13.13 0.00 38.65 4.41
1726 1760 1.393539 ACGATTTGTGCACGATACAGC 59.606 47.619 13.13 0.00 0.00 4.40
1727 1761 2.923655 AGACGATTTGTGCACGATACAG 59.076 45.455 13.13 4.49 0.00 2.74
1728 1762 2.666022 CAGACGATTTGTGCACGATACA 59.334 45.455 13.13 0.00 0.00 2.29
1729 1763 2.534939 GCAGACGATTTGTGCACGATAC 60.535 50.000 13.13 6.65 37.16 2.24
1730 1764 1.658596 GCAGACGATTTGTGCACGATA 59.341 47.619 13.13 0.00 37.16 2.92
1731 1765 0.443869 GCAGACGATTTGTGCACGAT 59.556 50.000 13.13 8.85 37.16 3.73
1732 1766 0.599991 AGCAGACGATTTGTGCACGA 60.600 50.000 13.13 7.71 39.80 4.35
1733 1767 1.067693 TAGCAGACGATTTGTGCACG 58.932 50.000 13.13 1.70 39.80 5.34
1734 1768 2.789092 GCATAGCAGACGATTTGTGCAC 60.789 50.000 10.75 10.75 39.80 4.57
1735 1769 1.398041 GCATAGCAGACGATTTGTGCA 59.602 47.619 0.00 0.00 39.80 4.57
1736 1770 1.593070 CGCATAGCAGACGATTTGTGC 60.593 52.381 0.00 0.00 37.48 4.57
1737 1771 1.660607 ACGCATAGCAGACGATTTGTG 59.339 47.619 0.00 0.00 0.00 3.33
1738 1772 1.927174 GACGCATAGCAGACGATTTGT 59.073 47.619 0.00 0.00 0.00 2.83
1739 1773 1.071894 CGACGCATAGCAGACGATTTG 60.072 52.381 0.00 0.00 0.00 2.32
1740 1774 1.200483 CGACGCATAGCAGACGATTT 58.800 50.000 0.00 0.00 0.00 2.17
1741 1775 0.100682 ACGACGCATAGCAGACGATT 59.899 50.000 0.00 0.00 0.00 3.34
1742 1776 0.592500 CACGACGCATAGCAGACGAT 60.593 55.000 0.00 0.00 0.00 3.73
1743 1777 1.226295 CACGACGCATAGCAGACGA 60.226 57.895 0.00 0.00 0.00 4.20
1744 1778 1.514228 ACACGACGCATAGCAGACG 60.514 57.895 0.00 0.00 0.00 4.18
1745 1779 1.991430 CACACGACGCATAGCAGAC 59.009 57.895 0.00 0.00 0.00 3.51
1746 1780 1.805539 GCACACGACGCATAGCAGA 60.806 57.895 0.00 0.00 0.00 4.26
1747 1781 2.094066 TGCACACGACGCATAGCAG 61.094 57.895 0.00 0.00 33.55 4.24
1748 1782 2.048690 TGCACACGACGCATAGCA 60.049 55.556 0.00 0.00 33.55 3.49
1753 1787 2.048690 TGCTATGCACACGACGCA 60.049 55.556 0.00 0.00 44.94 5.24
1754 1788 2.697425 CTGCTATGCACACGACGC 59.303 61.111 0.00 0.00 33.79 5.19
1755 1789 1.746727 GAGCTGCTATGCACACGACG 61.747 60.000 0.15 0.00 33.79 5.12
1756 1790 0.459237 AGAGCTGCTATGCACACGAC 60.459 55.000 0.15 0.00 33.79 4.34
1757 1791 0.179127 GAGAGCTGCTATGCACACGA 60.179 55.000 0.00 0.00 33.79 4.35
1758 1792 0.179116 AGAGAGCTGCTATGCACACG 60.179 55.000 0.00 0.00 33.79 4.49
1759 1793 2.021355 AAGAGAGCTGCTATGCACAC 57.979 50.000 0.00 0.00 33.79 3.82
1760 1794 3.493873 CCATAAGAGAGCTGCTATGCACA 60.494 47.826 0.00 0.00 33.79 4.57
1761 1795 3.065655 CCATAAGAGAGCTGCTATGCAC 58.934 50.000 0.00 0.00 33.79 4.57
1762 1796 2.038164 CCCATAAGAGAGCTGCTATGCA 59.962 50.000 0.00 0.00 36.92 3.96
1763 1797 2.301296 TCCCATAAGAGAGCTGCTATGC 59.699 50.000 0.00 0.00 0.00 3.14
1764 1798 4.822685 ATCCCATAAGAGAGCTGCTATG 57.177 45.455 0.00 1.67 0.00 2.23
1765 1799 4.019501 CCAATCCCATAAGAGAGCTGCTAT 60.020 45.833 0.15 0.00 0.00 2.97
1766 1800 3.326006 CCAATCCCATAAGAGAGCTGCTA 59.674 47.826 0.15 0.00 0.00 3.49
1767 1801 2.106166 CCAATCCCATAAGAGAGCTGCT 59.894 50.000 0.00 0.00 0.00 4.24
1768 1802 2.105477 TCCAATCCCATAAGAGAGCTGC 59.895 50.000 0.00 0.00 0.00 5.25
1769 1803 4.428294 TTCCAATCCCATAAGAGAGCTG 57.572 45.455 0.00 0.00 0.00 4.24
1770 1804 5.659849 ATTTCCAATCCCATAAGAGAGCT 57.340 39.130 0.00 0.00 0.00 4.09
1771 1805 6.510536 CAAATTTCCAATCCCATAAGAGAGC 58.489 40.000 0.00 0.00 0.00 4.09
1772 1806 6.323225 AGCAAATTTCCAATCCCATAAGAGAG 59.677 38.462 0.00 0.00 0.00 3.20
1773 1807 6.197168 AGCAAATTTCCAATCCCATAAGAGA 58.803 36.000 0.00 0.00 0.00 3.10
1774 1808 6.475596 AGCAAATTTCCAATCCCATAAGAG 57.524 37.500 0.00 0.00 0.00 2.85
1775 1809 6.894654 TGTAGCAAATTTCCAATCCCATAAGA 59.105 34.615 0.00 0.00 0.00 2.10
1776 1810 7.111247 TGTAGCAAATTTCCAATCCCATAAG 57.889 36.000 0.00 0.00 0.00 1.73
1777 1811 7.180051 ACTTGTAGCAAATTTCCAATCCCATAA 59.820 33.333 0.00 0.00 0.00 1.90
1778 1812 6.667414 ACTTGTAGCAAATTTCCAATCCCATA 59.333 34.615 0.00 0.00 0.00 2.74
1779 1813 5.484998 ACTTGTAGCAAATTTCCAATCCCAT 59.515 36.000 0.00 0.00 0.00 4.00
1780 1814 4.837860 ACTTGTAGCAAATTTCCAATCCCA 59.162 37.500 0.00 0.00 0.00 4.37
1781 1815 5.405935 ACTTGTAGCAAATTTCCAATCCC 57.594 39.130 0.00 0.00 0.00 3.85
1782 1816 5.120674 GCAACTTGTAGCAAATTTCCAATCC 59.879 40.000 0.00 0.00 0.00 3.01
1783 1817 5.695816 TGCAACTTGTAGCAAATTTCCAATC 59.304 36.000 0.00 0.00 37.90 2.67
1784 1818 5.609423 TGCAACTTGTAGCAAATTTCCAAT 58.391 33.333 0.00 0.00 37.90 3.16
1785 1819 5.016051 TGCAACTTGTAGCAAATTTCCAA 57.984 34.783 0.00 0.00 37.90 3.53
1818 1853 7.160547 TCTGCTTTCATTTTCAGCATTCATA 57.839 32.000 0.00 0.00 42.59 2.15
1868 1904 5.409214 TCCAGCAAAAATGCTCTTAAATTGC 59.591 36.000 0.00 0.00 44.30 3.56
2077 2114 6.293462 GGACACCGATAAAGCCTGAATAATTC 60.293 42.308 0.00 0.00 0.00 2.17
2085 2122 2.093447 AGAAGGACACCGATAAAGCCTG 60.093 50.000 0.00 0.00 0.00 4.85
2086 2123 2.188817 AGAAGGACACCGATAAAGCCT 58.811 47.619 0.00 0.00 0.00 4.58
2294 2331 8.263854 AGCCTTATAACACCATAACAGTAGAT 57.736 34.615 0.00 0.00 0.00 1.98
2507 2545 5.789574 ACCATCCTTTCCACCTATACAAA 57.210 39.130 0.00 0.00 0.00 2.83
2679 2717 1.209019 AGAATGCTGGGCTCAGTAGTG 59.791 52.381 16.66 0.00 42.78 2.74
2681 2719 1.209019 ACAGAATGCTGGGCTCAGTAG 59.791 52.381 16.66 0.80 46.60 2.57
2781 2819 2.711009 AGAACAGGACAAACCATCAGGA 59.289 45.455 0.00 0.00 42.04 3.86
3086 3124 3.390639 ATCTGATGGAGAAGATGGGACAC 59.609 47.826 0.00 0.00 35.70 3.67
3208 3246 1.699634 TGTCTCCTCTGGTTTCTTGGG 59.300 52.381 0.00 0.00 0.00 4.12
3287 3325 2.028020 AGATCTTCAACGTTGACCCCTC 60.028 50.000 29.74 21.45 36.83 4.30
3298 3336 9.482627 TTTAAGTTCTCTCAGAAGATCTTCAAC 57.517 33.333 31.79 24.80 41.84 3.18
3312 3350 8.426881 ACAACTTGTTCTCTTTAAGTTCTCTC 57.573 34.615 0.00 0.00 41.30 3.20
3313 3351 8.794335 AACAACTTGTTCTCTTTAAGTTCTCT 57.206 30.769 1.00 0.00 41.30 3.10
3363 3401 4.576463 TGGAGAAGAGCACTGAAGTTTTTC 59.424 41.667 0.00 0.00 0.00 2.29
3887 3940 4.853924 TTCTTCATGGCCTTTCTCAAAC 57.146 40.909 3.32 0.00 0.00 2.93
3926 3979 2.237143 TCAGGACCATTCACATCAGGAC 59.763 50.000 0.00 0.00 0.00 3.85
4060 4113 4.942761 TCTTTTCAGGCTTGCTGATTTT 57.057 36.364 0.00 0.00 0.00 1.82
4071 4124 3.619038 CAGAACCTCGTATCTTTTCAGGC 59.381 47.826 0.00 0.00 0.00 4.85
4072 4125 4.081642 TCCAGAACCTCGTATCTTTTCAGG 60.082 45.833 0.00 0.00 0.00 3.86
4159 4212 8.739039 TGTTCCATCACGATTTTGATTATCTTT 58.261 29.630 0.00 0.00 33.74 2.52
4175 4228 5.243730 TCCAAATCTTTCCTTGTTCCATCAC 59.756 40.000 0.00 0.00 0.00 3.06
4312 4365 5.446340 CCTTTGCTTCTGAAACAAGTTTTGC 60.446 40.000 6.36 0.00 32.11 3.68
4401 4454 8.579850 ACTTATTAAATCTGAAGCCAATGTCA 57.420 30.769 0.00 0.00 0.00 3.58
4568 4870 1.755395 GCCATGGGATCAGCTTGCA 60.755 57.895 15.13 0.00 0.00 4.08
4700 5003 6.957920 TCATGAACAAAAGAATCCACTCAA 57.042 33.333 0.00 0.00 0.00 3.02
4813 5404 4.013050 TGACAAGTTGACAACCACAATGA 58.987 39.130 14.72 0.00 0.00 2.57
4822 5413 5.934043 CACTCCAGATATGACAAGTTGACAA 59.066 40.000 10.54 1.67 0.00 3.18
4823 5414 5.245977 TCACTCCAGATATGACAAGTTGACA 59.754 40.000 10.54 10.45 0.00 3.58
4824 5415 5.578727 GTCACTCCAGATATGACAAGTTGAC 59.421 44.000 10.54 3.81 41.94 3.18
4825 5416 5.724328 GTCACTCCAGATATGACAAGTTGA 58.276 41.667 10.54 0.00 41.94 3.18
4845 5436 1.016627 GAGCACTGCACTGTTTGTCA 58.983 50.000 3.30 0.00 0.00 3.58
4909 5505 7.064253 AGGTGATATGTTTCTGTTAACGCTTAC 59.936 37.037 0.26 0.00 0.00 2.34
5057 5653 5.645067 TCATGAGCAGACAAGGAAAGTATTG 59.355 40.000 0.00 0.00 0.00 1.90
5164 5760 9.599866 CTGGACTATATATGTTTCAGTGTTTCA 57.400 33.333 0.00 0.00 0.00 2.69
5165 5761 9.046296 CCTGGACTATATATGTTTCAGTGTTTC 57.954 37.037 0.00 0.00 0.00 2.78
5166 5762 8.548877 ACCTGGACTATATATGTTTCAGTGTTT 58.451 33.333 0.00 0.00 0.00 2.83
5167 5763 8.090788 ACCTGGACTATATATGTTTCAGTGTT 57.909 34.615 0.00 0.00 0.00 3.32
5168 5764 7.202011 GGACCTGGACTATATATGTTTCAGTGT 60.202 40.741 0.00 0.00 0.00 3.55
5169 5765 7.155328 GGACCTGGACTATATATGTTTCAGTG 58.845 42.308 0.00 0.00 0.00 3.66
5170 5766 6.844388 TGGACCTGGACTATATATGTTTCAGT 59.156 38.462 0.00 0.00 0.00 3.41
5171 5767 7.303182 TGGACCTGGACTATATATGTTTCAG 57.697 40.000 0.00 0.00 0.00 3.02
5213 5810 6.631962 AGCTGGAATAACTGTACTGTAACTC 58.368 40.000 5.76 3.26 0.00 3.01
5218 5815 5.423015 CATGAGCTGGAATAACTGTACTGT 58.577 41.667 0.00 0.00 0.00 3.55
5235 5832 1.700955 AGGATGGGAATTGCATGAGC 58.299 50.000 0.00 0.00 42.57 4.26
5412 6009 6.865726 CAGCTGTACTAACTGATGGATATGTC 59.134 42.308 5.25 0.00 37.32 3.06
5434 6031 5.064962 CCATTTCTTCTCAGAGATCAACAGC 59.935 44.000 0.00 0.00 0.00 4.40
5562 6159 1.483827 TGGTTGTGCTTCCATTTGCAA 59.516 42.857 0.00 0.00 41.10 4.08
5564 6161 2.460757 ATGGTTGTGCTTCCATTTGC 57.539 45.000 0.00 0.00 41.02 3.68
5565 6162 5.327616 TGATATGGTTGTGCTTCCATTTG 57.672 39.130 2.05 0.00 43.22 2.32
5566 6163 5.481473 ACTTGATATGGTTGTGCTTCCATTT 59.519 36.000 2.05 0.00 43.22 2.32
5568 6165 4.603131 ACTTGATATGGTTGTGCTTCCAT 58.397 39.130 0.00 0.00 45.10 3.41
5569 6166 4.032960 ACTTGATATGGTTGTGCTTCCA 57.967 40.909 0.00 0.00 38.14 3.53
5570 6167 5.648092 ACTTACTTGATATGGTTGTGCTTCC 59.352 40.000 0.00 0.00 0.00 3.46
5571 6168 6.743575 ACTTACTTGATATGGTTGTGCTTC 57.256 37.500 0.00 0.00 0.00 3.86
5572 6169 6.490040 ACAACTTACTTGATATGGTTGTGCTT 59.510 34.615 8.19 0.00 43.28 3.91
5573 6170 6.003950 ACAACTTACTTGATATGGTTGTGCT 58.996 36.000 8.19 0.00 43.28 4.40
5574 6171 6.254281 ACAACTTACTTGATATGGTTGTGC 57.746 37.500 8.19 0.00 43.28 4.57
5575 6172 7.305474 GGAACAACTTACTTGATATGGTTGTG 58.695 38.462 9.47 0.00 43.85 3.33
5576 6173 6.433093 GGGAACAACTTACTTGATATGGTTGT 59.567 38.462 0.00 0.00 45.64 3.32
5577 6174 6.659242 AGGGAACAACTTACTTGATATGGTTG 59.341 38.462 0.00 0.00 39.58 3.77
5578 6175 6.659242 CAGGGAACAACTTACTTGATATGGTT 59.341 38.462 0.00 0.00 33.59 3.67
5579 6176 6.180472 CAGGGAACAACTTACTTGATATGGT 58.820 40.000 0.00 0.00 33.59 3.55
5580 6177 5.066505 GCAGGGAACAACTTACTTGATATGG 59.933 44.000 0.00 0.00 33.59 2.74
5581 6178 5.647658 TGCAGGGAACAACTTACTTGATATG 59.352 40.000 0.00 0.00 33.59 1.78
5582 6179 5.815581 TGCAGGGAACAACTTACTTGATAT 58.184 37.500 0.00 0.00 33.59 1.63
5583 6180 5.235850 TGCAGGGAACAACTTACTTGATA 57.764 39.130 0.00 0.00 33.59 2.15
5584 6181 4.098914 TGCAGGGAACAACTTACTTGAT 57.901 40.909 0.00 0.00 33.59 2.57
5585 6182 3.569194 TGCAGGGAACAACTTACTTGA 57.431 42.857 0.00 0.00 33.59 3.02
5586 6183 3.882888 TCTTGCAGGGAACAACTTACTTG 59.117 43.478 0.00 0.00 35.77 3.16
5587 6184 4.164843 TCTTGCAGGGAACAACTTACTT 57.835 40.909 0.00 0.00 0.00 2.24
5588 6185 3.857157 TCTTGCAGGGAACAACTTACT 57.143 42.857 0.00 0.00 0.00 2.24
5589 6186 4.607955 GTTTCTTGCAGGGAACAACTTAC 58.392 43.478 14.80 1.61 0.00 2.34
5590 6187 3.314080 CGTTTCTTGCAGGGAACAACTTA 59.686 43.478 19.06 0.00 0.00 2.24
5591 6188 2.099098 CGTTTCTTGCAGGGAACAACTT 59.901 45.455 19.06 0.00 0.00 2.66
5592 6189 1.676006 CGTTTCTTGCAGGGAACAACT 59.324 47.619 19.06 0.00 0.00 3.16
5593 6190 1.269051 CCGTTTCTTGCAGGGAACAAC 60.269 52.381 19.06 8.08 0.00 3.32
5594 6191 1.028905 CCGTTTCTTGCAGGGAACAA 58.971 50.000 19.06 0.00 0.00 2.83
5595 6192 0.181587 TCCGTTTCTTGCAGGGAACA 59.818 50.000 19.06 0.00 0.00 3.18
5596 6193 1.314730 TTCCGTTTCTTGCAGGGAAC 58.685 50.000 9.92 9.92 34.07 3.62
5597 6194 1.679153 GTTTCCGTTTCTTGCAGGGAA 59.321 47.619 0.00 0.00 36.59 3.97
5598 6195 1.314730 GTTTCCGTTTCTTGCAGGGA 58.685 50.000 0.00 0.00 0.00 4.20
5599 6196 1.001378 CTGTTTCCGTTTCTTGCAGGG 60.001 52.381 0.00 0.00 0.00 4.45
5600 6197 1.600413 GCTGTTTCCGTTTCTTGCAGG 60.600 52.381 0.00 0.00 0.00 4.85
5601 6198 1.600413 GGCTGTTTCCGTTTCTTGCAG 60.600 52.381 0.00 0.00 0.00 4.41
5602 6199 0.383949 GGCTGTTTCCGTTTCTTGCA 59.616 50.000 0.00 0.00 0.00 4.08
5603 6200 0.383949 TGGCTGTTTCCGTTTCTTGC 59.616 50.000 0.00 0.00 0.00 4.01
5604 6201 1.001378 CCTGGCTGTTTCCGTTTCTTG 60.001 52.381 0.00 0.00 0.00 3.02
5605 6202 1.318576 CCTGGCTGTTTCCGTTTCTT 58.681 50.000 0.00 0.00 0.00 2.52
5606 6203 1.172812 GCCTGGCTGTTTCCGTTTCT 61.173 55.000 12.43 0.00 0.00 2.52
5607 6204 1.285950 GCCTGGCTGTTTCCGTTTC 59.714 57.895 12.43 0.00 0.00 2.78
5611 6208 3.058160 CTGGCCTGGCTGTTTCCG 61.058 66.667 19.68 0.00 0.00 4.30
5650 6247 3.055094 AGGCAAAGTCATCGACATTACCT 60.055 43.478 0.00 0.00 33.74 3.08
5792 6389 7.201679 CGAATCTTTTCCTGCTTGTTCATCTAT 60.202 37.037 0.00 0.00 0.00 1.98
5978 6575 7.821595 AACACTGACGATAATGTTTATTCGA 57.178 32.000 0.00 0.00 31.27 3.71
6157 6763 3.070018 GCCATCATCTAGTGCATACCAC 58.930 50.000 0.00 0.00 45.01 4.16
6306 6912 2.370189 GGCTGGGTGTAGAAGCATAGAT 59.630 50.000 0.00 0.00 38.73 1.98
6310 6916 0.916358 AGGGCTGGGTGTAGAAGCAT 60.916 55.000 0.00 0.00 38.73 3.79
6318 6924 1.564348 CTAATTGGTAGGGCTGGGTGT 59.436 52.381 0.00 0.00 0.00 4.16
6337 6943 4.148825 GATGCGCACGACTCCCCT 62.149 66.667 14.90 0.00 0.00 4.79
6342 6948 0.390340 AGATGTTGATGCGCACGACT 60.390 50.000 14.90 0.00 0.00 4.18
6343 6949 0.247419 CAGATGTTGATGCGCACGAC 60.247 55.000 14.90 17.03 0.00 4.34
6344 6950 0.389687 TCAGATGTTGATGCGCACGA 60.390 50.000 14.90 3.71 0.00 4.35
6345 6951 0.654160 ATCAGATGTTGATGCGCACG 59.346 50.000 14.90 0.00 44.84 5.34
6346 6952 1.938577 AGATCAGATGTTGATGCGCAC 59.061 47.619 14.90 7.75 46.51 5.34
6348 6954 4.801147 TTAAGATCAGATGTTGATGCGC 57.199 40.909 0.00 0.00 46.51 6.09
6387 6994 2.224402 GGAGCGATCTAGGGCAAGATTT 60.224 50.000 0.00 0.00 36.33 2.17
6388 6995 1.346068 GGAGCGATCTAGGGCAAGATT 59.654 52.381 0.00 0.00 36.33 2.40
6405 7012 3.659183 ATCCTTTGAATGGAGTGGGAG 57.341 47.619 5.99 0.00 36.99 4.30
6421 7028 3.474798 TGGAAGGTGAGACTGTATCCT 57.525 47.619 0.00 0.00 0.00 3.24
6470 7077 1.267732 GCATGCATGTCTAGTTGCGAC 60.268 52.381 26.79 0.00 41.80 5.19
6488 7095 4.141914 TGGTGTACCATATCGTAACATGCA 60.142 41.667 0.00 0.00 42.01 3.96
6504 7111 2.292267 CTGGATGGCAATCTGGTGTAC 58.708 52.381 0.00 0.00 32.95 2.90
6532 7139 0.605319 GGAGAACACATGAACCGGCA 60.605 55.000 0.00 0.00 0.00 5.69
6630 7237 1.545582 CCTCACCATGCCGTTTGAAAT 59.454 47.619 0.00 0.00 0.00 2.17
6646 7253 6.852420 AGTAGTTTAGCTGTTCATACCTCA 57.148 37.500 0.00 0.00 0.00 3.86
6647 7254 9.649167 TTTTAGTAGTTTAGCTGTTCATACCTC 57.351 33.333 0.00 0.00 0.00 3.85
6688 7295 8.208224 TGTTTCTCTTATTGTCTCTGTAAACCA 58.792 33.333 0.00 0.00 0.00 3.67
6728 7335 1.679139 TTCAACCAACACAGCAGAGG 58.321 50.000 0.00 0.00 0.00 3.69
6746 7353 4.284490 TCTGCTTGAGGACTACAGACAATT 59.716 41.667 0.00 0.00 32.65 2.32
6860 7467 2.159310 ACACCGAAATTGTGTGTGGTTG 60.159 45.455 7.00 0.00 44.85 3.77
6877 7484 1.537202 GTTTCAGAGCACATGGACACC 59.463 52.381 0.00 0.00 0.00 4.16
7050 7657 7.656137 ACATCTGAAACTTATTGTGTTCGTACT 59.344 33.333 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.