Multiple sequence alignment - TraesCS4A01G208000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G208000 chr4A 100.000 4170 0 0 1 4170 501135463 501131294 0.000000e+00 7701.0
1 TraesCS4A01G208000 chr4D 92.603 3258 153 29 263 3482 88155002 88151795 0.000000e+00 4601.0
2 TraesCS4A01G208000 chr4B 94.984 1535 55 12 1960 3482 124927676 124926152 0.000000e+00 2388.0
3 TraesCS4A01G208000 chr4B 89.753 1415 84 21 495 1885 124929070 124927693 0.000000e+00 1753.0
4 TraesCS4A01G208000 chr4B 88.517 209 23 1 1 208 124931212 124931004 6.920000e-63 252.0
5 TraesCS4A01G208000 chr4B 88.961 154 17 0 4017 4170 124925470 124925317 1.530000e-44 191.0
6 TraesCS4A01G208000 chr4B 93.878 49 3 0 4122 4170 124925813 124925765 1.610000e-09 75.0
7 TraesCS4A01G208000 chr5D 83.178 1183 165 29 2013 3175 202850936 202852104 0.000000e+00 1051.0
8 TraesCS4A01G208000 chr5D 97.917 48 1 0 3435 3482 6236523 6236476 2.670000e-12 84.2
9 TraesCS4A01G208000 chr5A 82.939 1184 166 29 2013 3175 219643947 219645115 0.000000e+00 1035.0
10 TraesCS4A01G208000 chr5B 82.937 1178 162 31 2013 3168 208727630 208726470 0.000000e+00 1026.0
11 TraesCS4A01G208000 chr6D 95.238 63 3 0 3947 4009 470322524 470322586 2.650000e-17 100.0
12 TraesCS4A01G208000 chr7A 100.000 39 0 0 3435 3473 352297068 352297030 5.780000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G208000 chr4A 501131294 501135463 4169 True 7701.0 7701 100.0000 1 4170 1 chr4A.!!$R1 4169
1 TraesCS4A01G208000 chr4D 88151795 88155002 3207 True 4601.0 4601 92.6030 263 3482 1 chr4D.!!$R1 3219
2 TraesCS4A01G208000 chr4B 124925317 124931212 5895 True 931.8 2388 91.2186 1 4170 5 chr4B.!!$R1 4169
3 TraesCS4A01G208000 chr5D 202850936 202852104 1168 False 1051.0 1051 83.1780 2013 3175 1 chr5D.!!$F1 1162
4 TraesCS4A01G208000 chr5A 219643947 219645115 1168 False 1035.0 1035 82.9390 2013 3175 1 chr5A.!!$F1 1162
5 TraesCS4A01G208000 chr5B 208726470 208727630 1160 True 1026.0 1026 82.9370 2013 3168 1 chr5B.!!$R1 1155

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
838 2569 0.174617 CTTTCCCTCGTCTCTGCTCC 59.825 60.0 0.00 0.0 0.00 4.70 F
1321 3052 0.033011 TGCCTCCTGACCTAGTCCTC 60.033 60.0 0.00 0.0 0.00 3.71 F
1919 3667 1.396653 GCTGTTGCAATGCCCTCTAT 58.603 50.0 0.59 0.0 39.41 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2008 3760 0.469494 TTCTTGTGCAGCTCTGTGGA 59.531 50.0 0.0 0.0 0.0 4.02 R
2130 3882 1.196766 TGAGATGCTGTGCCCAGACT 61.197 55.0 0.0 0.0 41.5 3.24 R
3782 5581 0.032615 AGGAGCCGAGAGAGAATGGT 60.033 55.0 0.0 0.0 0.0 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.389329 ACTTGCGACCATTGATCTCCTAT 59.611 43.478 0.00 0.00 0.00 2.57
54 55 5.479375 TCCTATGCTAGGGATAAAGGTTACG 59.521 44.000 8.74 0.00 46.24 3.18
55 56 5.479375 CCTATGCTAGGGATAAAGGTTACGA 59.521 44.000 0.00 0.00 42.42 3.43
58 59 5.145564 TGCTAGGGATAAAGGTTACGAGAT 58.854 41.667 0.00 0.00 0.00 2.75
91 92 0.460284 GGTGACGGTCATCGAAGCAT 60.460 55.000 14.78 0.00 42.43 3.79
96 97 1.935873 ACGGTCATCGAAGCATCATTG 59.064 47.619 0.00 0.00 42.43 2.82
103 104 4.445385 TCATCGAAGCATCATTGTGATACG 59.555 41.667 0.00 0.00 34.28 3.06
122 123 2.223479 ACGCCTCACATGTTTGACAAAC 60.223 45.455 21.68 21.68 41.73 2.93
123 124 2.742774 GCCTCACATGTTTGACAAACC 58.257 47.619 24.58 10.19 40.67 3.27
132 134 4.891992 TGTTTGACAAACCCCTCAAAAA 57.108 36.364 24.58 3.62 37.96 1.94
138 140 3.296854 ACAAACCCCTCAAAAACTCCTC 58.703 45.455 0.00 0.00 0.00 3.71
140 142 0.400594 ACCCCTCAAAAACTCCTCGG 59.599 55.000 0.00 0.00 0.00 4.63
144 146 2.347731 CCTCAAAAACTCCTCGGTAGC 58.652 52.381 0.00 0.00 0.00 3.58
154 156 1.747355 TCCTCGGTAGCCTTCTTAACG 59.253 52.381 0.00 0.00 0.00 3.18
161 163 3.556365 GGTAGCCTTCTTAACGCTTCATC 59.444 47.826 0.00 0.00 34.03 2.92
168 170 5.235186 CCTTCTTAACGCTTCATCTACATGG 59.765 44.000 0.00 0.00 0.00 3.66
171 173 6.582636 TCTTAACGCTTCATCTACATGGAAT 58.417 36.000 0.00 0.00 0.00 3.01
182 184 7.632861 TCATCTACATGGAATTTCAAGAAGGA 58.367 34.615 0.00 0.00 0.00 3.36
187 189 5.835280 ACATGGAATTTCAAGAAGGACACTT 59.165 36.000 0.00 0.00 40.34 3.16
188 190 7.004086 ACATGGAATTTCAAGAAGGACACTTA 58.996 34.615 0.00 0.00 36.97 2.24
199 201 0.461961 GGACACTTATGGAGCGCTCT 59.538 55.000 34.46 20.03 0.00 4.09
208 210 2.496817 GAGCGCTCTAGTGTGGGG 59.503 66.667 29.88 0.00 0.00 4.96
209 211 2.283966 AGCGCTCTAGTGTGGGGT 60.284 61.111 2.64 2.62 0.00 4.95
210 212 2.125512 GCGCTCTAGTGTGGGGTG 60.126 66.667 0.00 0.00 0.00 4.61
211 213 2.579201 CGCTCTAGTGTGGGGTGG 59.421 66.667 0.00 0.00 0.00 4.61
212 214 2.990479 GCTCTAGTGTGGGGTGGG 59.010 66.667 0.00 0.00 0.00 4.61
213 215 2.670148 GCTCTAGTGTGGGGTGGGG 61.670 68.421 0.00 0.00 0.00 4.96
214 216 1.229529 CTCTAGTGTGGGGTGGGGT 60.230 63.158 0.00 0.00 0.00 4.95
215 217 1.537889 TCTAGTGTGGGGTGGGGTG 60.538 63.158 0.00 0.00 0.00 4.61
216 218 2.530661 TAGTGTGGGGTGGGGTGG 60.531 66.667 0.00 0.00 0.00 4.61
242 244 7.712204 GGGGGATTGAGAATTTAAAACTACA 57.288 36.000 0.00 0.00 0.00 2.74
243 245 8.129496 GGGGGATTGAGAATTTAAAACTACAA 57.871 34.615 0.00 0.00 0.00 2.41
244 246 8.251026 GGGGGATTGAGAATTTAAAACTACAAG 58.749 37.037 0.00 0.00 0.00 3.16
245 247 8.251026 GGGGATTGAGAATTTAAAACTACAAGG 58.749 37.037 0.00 0.00 0.00 3.61
246 248 8.803235 GGGATTGAGAATTTAAAACTACAAGGT 58.197 33.333 0.00 0.00 0.00 3.50
247 249 9.626045 GGATTGAGAATTTAAAACTACAAGGTG 57.374 33.333 0.00 0.00 0.00 4.00
251 253 9.841295 TGAGAATTTAAAACTACAAGGTGTACT 57.159 29.630 0.00 0.00 0.00 2.73
253 255 9.841295 AGAATTTAAAACTACAAGGTGTACTGA 57.159 29.630 0.00 0.00 0.00 3.41
254 256 9.874215 GAATTTAAAACTACAAGGTGTACTGAC 57.126 33.333 0.00 0.00 0.00 3.51
255 257 7.467557 TTTAAAACTACAAGGTGTACTGACG 57.532 36.000 0.00 0.00 0.00 4.35
256 258 4.660789 AAACTACAAGGTGTACTGACGT 57.339 40.909 0.00 0.00 0.00 4.34
257 259 5.772825 AAACTACAAGGTGTACTGACGTA 57.227 39.130 0.00 0.00 0.00 3.57
258 260 5.368256 AACTACAAGGTGTACTGACGTAG 57.632 43.478 0.00 1.99 35.22 3.51
294 296 1.359848 CTCTTGCAACTTACGCGGAT 58.640 50.000 12.47 0.00 0.00 4.18
298 300 3.369756 TCTTGCAACTTACGCGGATAAAG 59.630 43.478 12.47 10.95 0.00 1.85
325 327 9.743057 AAGAACAAAACAACAAAATATCGATGA 57.257 25.926 8.54 0.00 0.00 2.92
332 334 9.743057 AAACAACAAAATATCGATGAACTTTGA 57.257 25.926 20.60 0.00 0.00 2.69
360 362 2.191981 TTCATAGACCCCCTCCCTTC 57.808 55.000 0.00 0.00 0.00 3.46
389 392 4.467438 ACCAAGAAGGCATTTTATGGGAAG 59.533 41.667 13.08 0.00 43.14 3.46
406 409 2.278332 AAGTGACTCTTCAAAGCCCC 57.722 50.000 0.00 0.00 31.90 5.80
510 2231 2.171725 GGCTTGGGTCGACATACGC 61.172 63.158 18.91 13.71 42.26 4.42
515 2236 1.300697 GGGTCGACATACGCCATCC 60.301 63.158 18.91 1.65 42.26 3.51
542 2263 0.322816 CAGCTTGAGCCAGGCCTTAA 60.323 55.000 8.22 0.00 43.38 1.85
545 2266 1.618343 GCTTGAGCCAGGCCTTAAAAA 59.382 47.619 8.22 0.00 30.01 1.94
701 2426 1.176619 CCGAACAAAACCCTCACCCC 61.177 60.000 0.00 0.00 0.00 4.95
752 2477 1.262640 TTTACGTGCCCTCCTCCTCC 61.263 60.000 0.00 0.00 0.00 4.30
753 2478 2.449967 TTACGTGCCCTCCTCCTCCA 62.450 60.000 0.00 0.00 0.00 3.86
838 2569 0.174617 CTTTCCCTCGTCTCTGCTCC 59.825 60.000 0.00 0.00 0.00 4.70
936 2667 2.069277 CGTTTCGTTGCGCTCTTGC 61.069 57.895 9.73 0.00 0.00 4.01
963 2694 1.228184 GCTGCCTGGATCTGATGGG 60.228 63.158 0.00 0.00 0.00 4.00
981 2712 4.666412 TGGGTTCCTGATTTGTTATCCA 57.334 40.909 0.00 0.00 0.00 3.41
1100 2831 0.394899 AAGGGTATGCCTGCTTGCTC 60.395 55.000 0.00 0.00 34.45 4.26
1133 2864 0.390492 CCTGCAGATGATAGCCGTGA 59.610 55.000 17.39 0.00 0.00 4.35
1153 2884 6.183360 CCGTGATATGCTCTGTTTGTATGTTT 60.183 38.462 0.00 0.00 0.00 2.83
1163 2894 7.148639 GCTCTGTTTGTATGTTTAGTCGATCAA 60.149 37.037 0.00 0.00 0.00 2.57
1190 2921 1.000163 CGAGCCGGCTTGTGAGTATAT 60.000 52.381 33.34 2.41 0.00 0.86
1192 2923 3.576648 GAGCCGGCTTGTGAGTATATAC 58.423 50.000 33.34 9.00 0.00 1.47
1222 2953 1.254313 GCGTCGCTTTTTGTTGAAACC 59.746 47.619 10.68 0.00 0.00 3.27
1259 2990 3.319972 ACCTTTTCGTGTGCAGTAGTAGA 59.680 43.478 0.00 0.00 0.00 2.59
1321 3052 0.033011 TGCCTCCTGACCTAGTCCTC 60.033 60.000 0.00 0.00 0.00 3.71
1364 3095 2.489329 CCTGTGCAACCTGTAATCCTTG 59.511 50.000 0.00 0.00 34.36 3.61
1382 3113 3.495193 CTTGATTTGCACGTCTCAATGG 58.505 45.455 0.00 0.00 0.00 3.16
1398 3129 7.033185 GTCTCAATGGTTGTTTTGTTGTTACT 58.967 34.615 0.00 0.00 0.00 2.24
1400 3131 6.692486 TCAATGGTTGTTTTGTTGTTACTGT 58.308 32.000 0.00 0.00 0.00 3.55
1487 3235 3.023119 TGTGCACCAGTTTTCAGTCAAT 58.977 40.909 15.69 0.00 0.00 2.57
1500 3248 8.470002 AGTTTTCAGTCAATTTTTGCTAGTCTT 58.530 29.630 0.00 0.00 0.00 3.01
1503 3251 7.194607 TCAGTCAATTTTTGCTAGTCTTGAG 57.805 36.000 0.00 0.00 0.00 3.02
1514 3262 3.620821 GCTAGTCTTGAGAGATGCCAAAC 59.379 47.826 0.00 0.00 33.70 2.93
1520 3268 3.490439 TGAGAGATGCCAAACACTTGA 57.510 42.857 0.00 0.00 34.14 3.02
1521 3269 4.025040 TGAGAGATGCCAAACACTTGAT 57.975 40.909 0.00 0.00 34.14 2.57
1526 3274 1.401761 TGCCAAACACTTGATGCACT 58.598 45.000 0.00 0.00 34.14 4.40
1539 3287 5.009911 ACTTGATGCACTTTCAGCAAATGTA 59.990 36.000 0.00 0.00 46.27 2.29
1544 3292 6.573664 TGCACTTTCAGCAAATGTATACTT 57.426 33.333 4.17 0.00 39.39 2.24
1614 3362 3.054508 TGATTACATCAGTGGCATGTGGA 60.055 43.478 7.53 0.00 35.95 4.02
1631 3379 3.500448 TGGAACACTGCCTGTTTGATA 57.500 42.857 0.00 0.00 43.60 2.15
1632 3380 4.032960 TGGAACACTGCCTGTTTGATAT 57.967 40.909 0.00 0.00 43.60 1.63
1635 3383 5.304101 TGGAACACTGCCTGTTTGATATTTT 59.696 36.000 0.00 0.00 43.60 1.82
1679 3427 6.310956 TGCGAAAATTTGACATTCCATTGATC 59.689 34.615 0.00 0.00 0.00 2.92
1683 3431 8.556213 AAAATTTGACATTCCATTGATCTTGG 57.444 30.769 8.50 8.50 35.45 3.61
1687 3435 6.947644 TGACATTCCATTGATCTTGGTATG 57.052 37.500 21.94 21.94 43.68 2.39
1888 3636 9.965824 TTCTTGTTTTACTCAATTGATTCCTTC 57.034 29.630 8.96 0.33 0.00 3.46
1907 3655 1.824230 TCCCACCATTATTGCTGTTGC 59.176 47.619 0.00 0.00 40.20 4.17
1919 3667 1.396653 GCTGTTGCAATGCCCTCTAT 58.603 50.000 0.59 0.00 39.41 1.98
1949 3697 7.591165 ACAGAAGTTGAATCATGAATCTGTTG 58.409 34.615 11.94 5.03 42.47 3.33
2008 3760 8.806429 TGTGTGATAACACTCCATTTGATATT 57.194 30.769 14.60 0.00 46.07 1.28
2019 3771 5.128205 TCCATTTGATATTCCACAGAGCTG 58.872 41.667 0.00 0.00 0.00 4.24
2130 3882 1.544691 GGCCTTCGTACTCTCAACTCA 59.455 52.381 0.00 0.00 0.00 3.41
2166 3918 3.359194 CAGCGAAGATGTCAGGAGG 57.641 57.895 0.00 0.00 40.13 4.30
2420 4185 3.999603 TCAGATCAGGAAGATGAAGGGA 58.000 45.455 0.00 0.00 37.00 4.20
2500 4265 5.983720 CCGATAAGGTTGACTATGGTTACAG 59.016 44.000 0.00 0.00 34.51 2.74
2534 4299 3.118112 AGGAAGTCCCTATTGATGCTGTG 60.118 47.826 0.00 0.00 45.48 3.66
2537 4302 4.307032 AGTCCCTATTGATGCTGTGTTT 57.693 40.909 0.00 0.00 0.00 2.83
2831 4596 5.629849 CGACAGGTGTGTTTTTGTTTTGTTA 59.370 36.000 0.00 0.00 36.88 2.41
2832 4597 6.183359 CGACAGGTGTGTTTTTGTTTTGTTAG 60.183 38.462 0.00 0.00 36.88 2.34
2834 4599 6.422400 ACAGGTGTGTTTTTGTTTTGTTAGTG 59.578 34.615 0.00 0.00 30.30 2.74
2837 4602 8.142551 AGGTGTGTTTTTGTTTTGTTAGTGTTA 58.857 29.630 0.00 0.00 0.00 2.41
2887 4652 6.100134 TCTGAATTGTATCTGGTGATGATCCA 59.900 38.462 0.00 0.00 34.32 3.41
3179 4944 4.737177 AGGCTTGAGCTGCTGCCC 62.737 66.667 21.71 10.22 45.94 5.36
3193 4958 1.721664 CTGCCCCGCATCATCAGTTG 61.722 60.000 0.00 0.00 38.13 3.16
3257 5022 4.514401 CCCTGCCTAAGTTTTGTACTAGG 58.486 47.826 0.00 0.00 35.54 3.02
3364 5129 3.998341 GAGTCGTACCTGGTTGCAAATTA 59.002 43.478 3.84 0.00 0.00 1.40
3377 5142 7.315142 TGGTTGCAAATTATCTGAAATGAGTC 58.685 34.615 0.00 0.00 0.00 3.36
3398 5163 4.277423 GTCTGCTTGCCTAAAAGGTTGTTA 59.723 41.667 0.00 0.00 37.80 2.41
3399 5164 5.048013 GTCTGCTTGCCTAAAAGGTTGTTAT 60.048 40.000 0.00 0.00 37.80 1.89
3400 5165 5.183140 TCTGCTTGCCTAAAAGGTTGTTATC 59.817 40.000 0.00 0.00 37.80 1.75
3401 5166 5.076873 TGCTTGCCTAAAAGGTTGTTATCT 58.923 37.500 0.00 0.00 37.80 1.98
3432 5198 3.424962 GCGAGCTTTGAAGGAATGTGTAC 60.425 47.826 0.00 0.00 0.00 2.90
3459 5225 4.392445 CCATTTTCATTGTTACCGTACCGA 59.608 41.667 0.00 0.00 0.00 4.69
3466 5232 4.576216 TTGTTACCGTACCGACTGTTAA 57.424 40.909 0.00 0.00 0.00 2.01
3476 5242 5.863397 CGTACCGACTGTTAAAATTAGGTCA 59.137 40.000 0.00 0.00 32.47 4.02
3482 5248 6.073222 CGACTGTTAAAATTAGGTCAGCTTGT 60.073 38.462 0.00 0.00 0.00 3.16
3483 5249 7.519970 CGACTGTTAAAATTAGGTCAGCTTGTT 60.520 37.037 0.00 0.00 0.00 2.83
3484 5250 7.649057 ACTGTTAAAATTAGGTCAGCTTGTTC 58.351 34.615 0.00 0.00 0.00 3.18
3485 5251 6.664515 TGTTAAAATTAGGTCAGCTTGTTCG 58.335 36.000 0.00 0.00 0.00 3.95
3486 5252 6.483974 TGTTAAAATTAGGTCAGCTTGTTCGA 59.516 34.615 0.00 0.00 0.00 3.71
3488 5254 3.963428 ATTAGGTCAGCTTGTTCGAGT 57.037 42.857 0.00 0.00 0.00 4.18
3489 5255 2.724977 TAGGTCAGCTTGTTCGAGTG 57.275 50.000 0.00 0.00 0.00 3.51
3490 5256 1.040646 AGGTCAGCTTGTTCGAGTGA 58.959 50.000 0.00 0.00 0.00 3.41
3491 5257 1.140816 GGTCAGCTTGTTCGAGTGAC 58.859 55.000 0.00 11.02 37.41 3.67
3492 5258 1.140816 GTCAGCTTGTTCGAGTGACC 58.859 55.000 0.00 0.00 32.95 4.02
3493 5259 0.750249 TCAGCTTGTTCGAGTGACCA 59.250 50.000 0.00 0.00 0.00 4.02
3494 5260 0.861837 CAGCTTGTTCGAGTGACCAC 59.138 55.000 0.00 0.00 0.00 4.16
3495 5261 0.464036 AGCTTGTTCGAGTGACCACA 59.536 50.000 2.78 0.00 0.00 4.17
3496 5262 1.070758 AGCTTGTTCGAGTGACCACAT 59.929 47.619 2.78 0.00 0.00 3.21
3498 5264 2.754472 CTTGTTCGAGTGACCACATGA 58.246 47.619 0.00 0.00 0.00 3.07
3500 5266 2.754472 TGTTCGAGTGACCACATGAAG 58.246 47.619 0.00 0.00 30.88 3.02
3501 5267 2.069273 GTTCGAGTGACCACATGAAGG 58.931 52.381 0.00 3.24 30.88 3.46
3504 5270 2.367241 TCGAGTGACCACATGAAGGAAA 59.633 45.455 14.40 1.41 0.00 3.13
3505 5271 3.138304 CGAGTGACCACATGAAGGAAAA 58.862 45.455 14.40 0.00 0.00 2.29
3507 5273 2.878406 AGTGACCACATGAAGGAAAACG 59.122 45.455 14.40 0.00 0.00 3.60
3508 5274 2.875933 GTGACCACATGAAGGAAAACGA 59.124 45.455 14.40 0.00 0.00 3.85
3509 5275 3.502211 GTGACCACATGAAGGAAAACGAT 59.498 43.478 14.40 0.00 0.00 3.73
3510 5276 4.023193 GTGACCACATGAAGGAAAACGATT 60.023 41.667 14.40 0.00 0.00 3.34
3513 5279 4.023193 ACCACATGAAGGAAAACGATTCAC 60.023 41.667 14.40 0.00 35.89 3.18
3514 5280 4.023279 CCACATGAAGGAAAACGATTCACA 60.023 41.667 0.00 0.00 35.89 3.58
3516 5282 5.796935 CACATGAAGGAAAACGATTCACATC 59.203 40.000 0.00 0.00 35.89 3.06
3530 5329 0.846401 CACATCGGTCGATTGTAGCG 59.154 55.000 2.84 0.00 39.11 4.26
3534 5333 2.960129 GGTCGATTGTAGCGCCGG 60.960 66.667 2.29 0.00 0.00 6.13
3549 5348 4.421479 CGGTCGCTTGCTCGTCCT 62.421 66.667 7.78 0.00 35.93 3.85
3550 5349 2.507324 GGTCGCTTGCTCGTCCTC 60.507 66.667 0.00 0.00 35.37 3.71
3558 5357 2.538437 CTTGCTCGTCCTCATCTCTTG 58.462 52.381 0.00 0.00 0.00 3.02
3581 5380 4.194720 ACGCTCGTCGCCATCCTC 62.195 66.667 0.00 0.00 43.23 3.71
3582 5381 4.193334 CGCTCGTCGCCATCCTCA 62.193 66.667 0.00 0.00 34.21 3.86
3586 5385 1.657751 CTCGTCGCCATCCTCACTCA 61.658 60.000 0.00 0.00 0.00 3.41
3593 5392 0.752054 CCATCCTCACTCAGCTCCTC 59.248 60.000 0.00 0.00 0.00 3.71
3594 5393 1.688942 CCATCCTCACTCAGCTCCTCT 60.689 57.143 0.00 0.00 0.00 3.69
3596 5395 0.969917 TCCTCACTCAGCTCCTCTGC 60.970 60.000 0.00 0.00 42.56 4.26
3603 5402 0.540454 TCAGCTCCTCTGCTTGGATG 59.460 55.000 0.00 0.00 41.98 3.51
3604 5403 1.096386 CAGCTCCTCTGCTTGGATGC 61.096 60.000 0.00 0.00 41.98 3.91
3605 5404 1.224039 GCTCCTCTGCTTGGATGCT 59.776 57.895 0.00 0.00 32.56 3.79
3606 5405 0.394080 GCTCCTCTGCTTGGATGCTT 60.394 55.000 0.00 0.00 32.56 3.91
3607 5406 1.380524 CTCCTCTGCTTGGATGCTTG 58.619 55.000 0.00 0.00 32.56 4.01
3608 5407 0.694771 TCCTCTGCTTGGATGCTTGT 59.305 50.000 0.00 0.00 0.00 3.16
3609 5408 1.074405 TCCTCTGCTTGGATGCTTGTT 59.926 47.619 0.00 0.00 0.00 2.83
3610 5409 1.891150 CCTCTGCTTGGATGCTTGTTT 59.109 47.619 0.00 0.00 0.00 2.83
3611 5410 2.094854 CCTCTGCTTGGATGCTTGTTTC 60.095 50.000 0.00 0.00 0.00 2.78
3612 5411 2.818432 CTCTGCTTGGATGCTTGTTTCT 59.182 45.455 0.00 0.00 0.00 2.52
3613 5412 3.225104 TCTGCTTGGATGCTTGTTTCTT 58.775 40.909 0.00 0.00 0.00 2.52
3614 5413 3.005050 TCTGCTTGGATGCTTGTTTCTTG 59.995 43.478 0.00 0.00 0.00 3.02
3615 5414 2.036217 TGCTTGGATGCTTGTTTCTTGG 59.964 45.455 0.00 0.00 0.00 3.61
3616 5415 2.680577 CTTGGATGCTTGTTTCTTGGC 58.319 47.619 0.00 0.00 0.00 4.52
3617 5416 0.597568 TGGATGCTTGTTTCTTGGCG 59.402 50.000 0.00 0.00 0.00 5.69
3618 5417 0.881118 GGATGCTTGTTTCTTGGCGA 59.119 50.000 0.00 0.00 0.00 5.54
3619 5418 1.135575 GGATGCTTGTTTCTTGGCGAG 60.136 52.381 0.00 0.00 0.00 5.03
3620 5419 0.242017 ATGCTTGTTTCTTGGCGAGC 59.758 50.000 0.00 0.00 41.29 5.03
3621 5420 0.819259 TGCTTGTTTCTTGGCGAGCT 60.819 50.000 0.00 0.00 41.44 4.09
3622 5421 0.110010 GCTTGTTTCTTGGCGAGCTC 60.110 55.000 2.73 2.73 38.67 4.09
3623 5422 0.519077 CTTGTTTCTTGGCGAGCTCC 59.481 55.000 8.47 0.47 0.00 4.70
3624 5423 0.889186 TTGTTTCTTGGCGAGCTCCC 60.889 55.000 8.47 11.08 0.00 4.30
3628 5427 0.614979 TTCTTGGCGAGCTCCCTACT 60.615 55.000 18.49 0.00 0.00 2.57
3639 5438 2.285368 CCCTACTGGCCACCTCCA 60.285 66.667 0.00 0.00 34.42 3.86
3640 5439 1.923395 CCCTACTGGCCACCTCCAA 60.923 63.158 0.00 0.00 35.36 3.53
3645 5444 2.863484 TGGCCACCTCCAACCCAT 60.863 61.111 0.00 0.00 32.18 4.00
3646 5445 2.043953 GGCCACCTCCAACCCATC 60.044 66.667 0.00 0.00 0.00 3.51
3647 5446 2.043953 GCCACCTCCAACCCATCC 60.044 66.667 0.00 0.00 0.00 3.51
3648 5447 2.616458 GCCACCTCCAACCCATCCT 61.616 63.158 0.00 0.00 0.00 3.24
3649 5448 1.609783 CCACCTCCAACCCATCCTC 59.390 63.158 0.00 0.00 0.00 3.71
3650 5449 0.916358 CCACCTCCAACCCATCCTCT 60.916 60.000 0.00 0.00 0.00 3.69
3651 5450 0.543749 CACCTCCAACCCATCCTCTC 59.456 60.000 0.00 0.00 0.00 3.20
3652 5451 0.419459 ACCTCCAACCCATCCTCTCT 59.581 55.000 0.00 0.00 0.00 3.10
3653 5452 1.203492 ACCTCCAACCCATCCTCTCTT 60.203 52.381 0.00 0.00 0.00 2.85
3654 5453 1.211457 CCTCCAACCCATCCTCTCTTG 59.789 57.143 0.00 0.00 0.00 3.02
3655 5454 1.211457 CTCCAACCCATCCTCTCTTGG 59.789 57.143 0.00 0.00 33.89 3.61
3656 5455 0.394899 CCAACCCATCCTCTCTTGGC 60.395 60.000 0.00 0.00 0.00 4.52
3657 5456 0.622665 CAACCCATCCTCTCTTGGCT 59.377 55.000 0.00 0.00 0.00 4.75
3658 5457 1.005215 CAACCCATCCTCTCTTGGCTT 59.995 52.381 0.00 0.00 0.00 4.35
3659 5458 0.622665 ACCCATCCTCTCTTGGCTTG 59.377 55.000 0.00 0.00 0.00 4.01
3660 5459 0.622665 CCCATCCTCTCTTGGCTTGT 59.377 55.000 0.00 0.00 0.00 3.16
3661 5460 1.407989 CCCATCCTCTCTTGGCTTGTC 60.408 57.143 0.00 0.00 0.00 3.18
3662 5461 1.558756 CCATCCTCTCTTGGCTTGTCT 59.441 52.381 0.00 0.00 0.00 3.41
3663 5462 2.419851 CCATCCTCTCTTGGCTTGTCTC 60.420 54.545 0.00 0.00 0.00 3.36
3664 5463 0.891373 TCCTCTCTTGGCTTGTCTCG 59.109 55.000 0.00 0.00 0.00 4.04
3665 5464 0.605589 CCTCTCTTGGCTTGTCTCGT 59.394 55.000 0.00 0.00 0.00 4.18
3666 5465 1.001406 CCTCTCTTGGCTTGTCTCGTT 59.999 52.381 0.00 0.00 0.00 3.85
3667 5466 2.548920 CCTCTCTTGGCTTGTCTCGTTT 60.549 50.000 0.00 0.00 0.00 3.60
3668 5467 2.734079 CTCTCTTGGCTTGTCTCGTTTC 59.266 50.000 0.00 0.00 0.00 2.78
3669 5468 2.365617 TCTCTTGGCTTGTCTCGTTTCT 59.634 45.455 0.00 0.00 0.00 2.52
3670 5469 3.134458 CTCTTGGCTTGTCTCGTTTCTT 58.866 45.455 0.00 0.00 0.00 2.52
3671 5470 2.872245 TCTTGGCTTGTCTCGTTTCTTG 59.128 45.455 0.00 0.00 0.00 3.02
3672 5471 1.593196 TGGCTTGTCTCGTTTCTTGG 58.407 50.000 0.00 0.00 0.00 3.61
3673 5472 0.238553 GGCTTGTCTCGTTTCTTGGC 59.761 55.000 0.00 0.00 0.00 4.52
3674 5473 0.110644 GCTTGTCTCGTTTCTTGGCG 60.111 55.000 0.00 0.00 0.00 5.69
3675 5474 1.497991 CTTGTCTCGTTTCTTGGCGA 58.502 50.000 0.00 0.00 35.70 5.54
3678 5477 4.268687 CTCGTTTCTTGGCGAGCT 57.731 55.556 0.00 0.00 46.01 4.09
3679 5478 2.074124 CTCGTTTCTTGGCGAGCTC 58.926 57.895 2.73 2.73 46.01 4.09
3680 5479 1.355066 CTCGTTTCTTGGCGAGCTCC 61.355 60.000 8.47 0.47 46.01 4.70
3681 5480 1.374758 CGTTTCTTGGCGAGCTCCT 60.375 57.895 8.47 0.00 0.00 3.69
3682 5481 1.355066 CGTTTCTTGGCGAGCTCCTC 61.355 60.000 8.47 0.74 0.00 3.71
3683 5482 1.021920 GTTTCTTGGCGAGCTCCTCC 61.022 60.000 8.47 10.36 0.00 4.30
3684 5483 2.185310 TTTCTTGGCGAGCTCCTCCC 62.185 60.000 8.47 6.95 0.00 4.30
3685 5484 4.168291 CTTGGCGAGCTCCTCCCC 62.168 72.222 8.47 4.34 0.00 4.81
3686 5485 4.722535 TTGGCGAGCTCCTCCCCT 62.723 66.667 8.47 0.00 30.40 4.79
3691 5490 2.766229 GAGCTCCTCCCCTGTCCC 60.766 72.222 0.87 0.00 0.00 4.46
3692 5491 4.423209 AGCTCCTCCCCTGTCCCC 62.423 72.222 0.00 0.00 0.00 4.81
3697 5496 2.616458 CCTCCCCTGTCCCCCTTTG 61.616 68.421 0.00 0.00 0.00 2.77
3708 5507 1.305930 CCCCCTTTGCTAACTCACGC 61.306 60.000 0.00 0.00 0.00 5.34
3710 5509 1.523758 CCCTTTGCTAACTCACGCTT 58.476 50.000 0.00 0.00 0.00 4.68
3714 5513 1.593196 TTGCTAACTCACGCTTGCTT 58.407 45.000 0.00 0.00 0.00 3.91
3715 5514 1.148310 TGCTAACTCACGCTTGCTTC 58.852 50.000 0.00 0.00 0.00 3.86
3716 5515 0.093705 GCTAACTCACGCTTGCTTCG 59.906 55.000 0.00 0.00 0.00 3.79
3717 5516 0.093705 CTAACTCACGCTTGCTTCGC 59.906 55.000 0.00 0.00 0.00 4.70
3718 5517 1.289109 TAACTCACGCTTGCTTCGCC 61.289 55.000 0.00 0.00 0.00 5.54
3719 5518 3.043713 CTCACGCTTGCTTCGCCA 61.044 61.111 0.00 0.00 0.00 5.69
3720 5519 2.358615 TCACGCTTGCTTCGCCAT 60.359 55.556 0.00 0.00 0.00 4.40
3721 5520 2.099062 CACGCTTGCTTCGCCATC 59.901 61.111 0.00 0.00 0.00 3.51
3722 5521 3.127533 ACGCTTGCTTCGCCATCC 61.128 61.111 0.00 0.00 0.00 3.51
3723 5522 2.821366 CGCTTGCTTCGCCATCCT 60.821 61.111 0.00 0.00 0.00 3.24
3725 5524 1.451028 GCTTGCTTCGCCATCCTCT 60.451 57.895 0.00 0.00 0.00 3.69
3728 5527 0.107993 TTGCTTCGCCATCCTCTCTG 60.108 55.000 0.00 0.00 0.00 3.35
3734 5533 3.947173 CCATCCTCTCTGGCTCGT 58.053 61.111 0.00 0.00 35.26 4.18
3735 5534 1.739049 CCATCCTCTCTGGCTCGTC 59.261 63.158 0.00 0.00 35.26 4.20
3738 5537 0.817634 ATCCTCTCTGGCTCGTCTCG 60.818 60.000 0.00 0.00 35.26 4.04
3740 5539 1.309499 CCTCTCTGGCTCGTCTCGTT 61.309 60.000 0.00 0.00 0.00 3.85
3741 5540 0.523966 CTCTCTGGCTCGTCTCGTTT 59.476 55.000 0.00 0.00 0.00 3.60
3742 5541 0.522180 TCTCTGGCTCGTCTCGTTTC 59.478 55.000 0.00 0.00 0.00 2.78
3743 5542 0.523966 CTCTGGCTCGTCTCGTTTCT 59.476 55.000 0.00 0.00 0.00 2.52
3746 5545 0.319555 TGGCTCGTCTCGTTTCTTGG 60.320 55.000 0.00 0.00 0.00 3.61
3747 5546 1.627550 GGCTCGTCTCGTTTCTTGGC 61.628 60.000 0.00 0.00 0.00 4.52
3748 5547 1.945776 GCTCGTCTCGTTTCTTGGCG 61.946 60.000 0.00 0.00 0.00 5.69
3749 5548 0.386858 CTCGTCTCGTTTCTTGGCGA 60.387 55.000 0.00 0.00 35.70 5.54
3752 5551 3.169198 CTCGTTTCTTGGCGAGCC 58.831 61.111 7.26 7.26 46.01 4.70
3753 5552 2.358247 TCGTTTCTTGGCGAGCCC 60.358 61.111 12.05 0.00 34.56 5.19
3754 5553 2.358737 CGTTTCTTGGCGAGCCCT 60.359 61.111 12.05 0.00 34.56 5.19
3755 5554 2.680913 CGTTTCTTGGCGAGCCCTG 61.681 63.158 12.05 4.47 34.56 4.45
3763 5562 3.878667 GCGAGCCCTGCCCCTATT 61.879 66.667 0.00 0.00 0.00 1.73
3764 5563 2.919043 CGAGCCCTGCCCCTATTT 59.081 61.111 0.00 0.00 0.00 1.40
3765 5564 1.227383 CGAGCCCTGCCCCTATTTT 59.773 57.895 0.00 0.00 0.00 1.82
3766 5565 0.395724 CGAGCCCTGCCCCTATTTTT 60.396 55.000 0.00 0.00 0.00 1.94
3767 5566 1.114627 GAGCCCTGCCCCTATTTTTG 58.885 55.000 0.00 0.00 0.00 2.44
3774 5573 3.193479 CCTGCCCCTATTTTTGAACTCAC 59.807 47.826 0.00 0.00 0.00 3.51
3778 5577 4.261867 GCCCCTATTTTTGAACTCACGTTT 60.262 41.667 0.00 0.00 32.39 3.60
3782 5581 6.459024 CCCTATTTTTGAACTCACGTTTGTCA 60.459 38.462 0.00 0.00 32.39 3.58
3815 5684 0.820871 GCTCCTCACCGTTGATCTCT 59.179 55.000 0.00 0.00 0.00 3.10
3836 5705 3.005539 ACGAGTGCCTCCATGCCT 61.006 61.111 0.00 0.00 0.00 4.75
3839 5708 3.336568 AGTGCCTCCATGCCTGCT 61.337 61.111 0.00 0.00 0.00 4.24
3841 5710 3.332385 TGCCTCCATGCCTGCTGA 61.332 61.111 0.00 0.00 0.00 4.26
3851 5720 0.036590 TGCCTGCTGAAGTGTGCATA 59.963 50.000 0.00 0.00 38.59 3.14
3856 5725 2.414481 CTGCTGAAGTGTGCATACTCAC 59.586 50.000 17.08 13.84 39.95 3.51
3864 5733 2.348666 GTGTGCATACTCACCGTTGATC 59.651 50.000 6.31 0.00 36.17 2.92
3869 5738 0.454600 TACTCACCGTTGATCTCCGC 59.545 55.000 0.00 0.00 0.00 5.54
3872 5741 1.153369 CACCGTTGATCTCCGCCAT 60.153 57.895 0.00 0.00 0.00 4.40
3882 5751 3.746949 CTCCGCCATGAGTGCCTCC 62.747 68.421 0.00 0.00 0.00 4.30
3885 5754 2.184830 CGCCATGAGTGCCTCCATG 61.185 63.158 0.00 0.00 0.00 3.66
3888 5757 2.184830 CATGAGTGCCTCCATGCCG 61.185 63.158 0.00 0.00 0.00 5.69
3921 5790 2.096496 CACTTGCACCATGCTAAGCTAC 59.904 50.000 2.02 0.00 45.31 3.58
3928 5797 1.571919 CATGCTAAGCTACGGTCCAC 58.428 55.000 0.00 0.00 0.00 4.02
3937 5806 1.806623 GCTACGGTCCACCATTGCTAG 60.807 57.143 0.00 0.00 35.14 3.42
3938 5807 1.754803 CTACGGTCCACCATTGCTAGA 59.245 52.381 0.00 0.00 35.14 2.43
3939 5808 0.981183 ACGGTCCACCATTGCTAGAA 59.019 50.000 0.00 0.00 35.14 2.10
3940 5809 1.338769 ACGGTCCACCATTGCTAGAAC 60.339 52.381 0.00 0.00 35.14 3.01
3941 5810 1.751437 GGTCCACCATTGCTAGAACC 58.249 55.000 0.00 0.00 35.64 3.62
3942 5811 1.004277 GGTCCACCATTGCTAGAACCA 59.996 52.381 0.00 0.00 35.64 3.67
3943 5812 2.359900 GTCCACCATTGCTAGAACCAG 58.640 52.381 0.00 0.00 0.00 4.00
3944 5813 1.098050 CCACCATTGCTAGAACCAGC 58.902 55.000 0.00 0.00 42.15 4.85
3970 5839 1.593196 CGGAGCTTGTCACCAAAAGA 58.407 50.000 0.00 0.00 0.00 2.52
3971 5840 2.154462 CGGAGCTTGTCACCAAAAGAT 58.846 47.619 0.00 0.00 0.00 2.40
3972 5841 2.095567 CGGAGCTTGTCACCAAAAGATG 60.096 50.000 0.00 0.00 0.00 2.90
3980 5849 3.302129 CCAAAAGATGGGCAGGCC 58.698 61.111 5.91 5.91 46.27 5.19
3981 5850 1.610086 CCAAAAGATGGGCAGGCCA 60.610 57.895 19.93 19.93 46.27 5.36
3982 5851 1.193462 CCAAAAGATGGGCAGGCCAA 61.193 55.000 21.65 4.69 46.27 4.52
3983 5852 0.686224 CAAAAGATGGGCAGGCCAAA 59.314 50.000 21.65 3.67 37.98 3.28
3984 5853 0.978907 AAAAGATGGGCAGGCCAAAG 59.021 50.000 21.65 0.00 37.98 2.77
3985 5854 0.114954 AAAGATGGGCAGGCCAAAGA 59.885 50.000 21.65 0.00 37.98 2.52
3986 5855 0.324091 AAGATGGGCAGGCCAAAGAG 60.324 55.000 21.65 0.00 37.98 2.85
3987 5856 1.210204 AGATGGGCAGGCCAAAGAGA 61.210 55.000 21.65 0.00 37.98 3.10
3988 5857 0.323725 GATGGGCAGGCCAAAGAGAA 60.324 55.000 21.65 0.00 37.98 2.87
3989 5858 0.324091 ATGGGCAGGCCAAAGAGAAG 60.324 55.000 21.65 0.00 37.98 2.85
3990 5859 1.380302 GGGCAGGCCAAAGAGAAGA 59.620 57.895 13.10 0.00 37.98 2.87
3991 5860 0.251341 GGGCAGGCCAAAGAGAAGAA 60.251 55.000 13.10 0.00 37.98 2.52
3992 5861 1.620822 GGCAGGCCAAAGAGAAGAAA 58.379 50.000 5.01 0.00 35.81 2.52
3993 5862 1.543358 GGCAGGCCAAAGAGAAGAAAG 59.457 52.381 5.01 0.00 35.81 2.62
3994 5863 1.067985 GCAGGCCAAAGAGAAGAAAGC 60.068 52.381 5.01 0.00 0.00 3.51
3995 5864 2.233271 CAGGCCAAAGAGAAGAAAGCA 58.767 47.619 5.01 0.00 0.00 3.91
3996 5865 2.228343 CAGGCCAAAGAGAAGAAAGCAG 59.772 50.000 5.01 0.00 0.00 4.24
3997 5866 1.067985 GGCCAAAGAGAAGAAAGCAGC 60.068 52.381 0.00 0.00 0.00 5.25
3998 5867 1.067985 GCCAAAGAGAAGAAAGCAGCC 60.068 52.381 0.00 0.00 0.00 4.85
3999 5868 2.512705 CCAAAGAGAAGAAAGCAGCCT 58.487 47.619 0.00 0.00 0.00 4.58
4000 5869 3.679389 CCAAAGAGAAGAAAGCAGCCTA 58.321 45.455 0.00 0.00 0.00 3.93
4001 5870 3.438434 CCAAAGAGAAGAAAGCAGCCTAC 59.562 47.826 0.00 0.00 0.00 3.18
4002 5871 4.067896 CAAAGAGAAGAAAGCAGCCTACA 58.932 43.478 0.00 0.00 0.00 2.74
4003 5872 3.608316 AGAGAAGAAAGCAGCCTACAG 57.392 47.619 0.00 0.00 0.00 2.74
4004 5873 3.169099 AGAGAAGAAAGCAGCCTACAGA 58.831 45.455 0.00 0.00 0.00 3.41
4005 5874 3.056179 AGAGAAGAAAGCAGCCTACAGAC 60.056 47.826 0.00 0.00 0.00 3.51
4006 5875 2.903135 AGAAGAAAGCAGCCTACAGACT 59.097 45.455 0.00 0.00 0.00 3.24
4007 5876 4.090090 AGAAGAAAGCAGCCTACAGACTA 58.910 43.478 0.00 0.00 0.00 2.59
4008 5877 4.159506 AGAAGAAAGCAGCCTACAGACTAG 59.840 45.833 0.00 0.00 0.00 2.57
4009 5878 2.167487 AGAAAGCAGCCTACAGACTAGC 59.833 50.000 0.00 0.00 0.00 3.42
4010 5879 0.827368 AAGCAGCCTACAGACTAGCC 59.173 55.000 0.00 0.00 0.00 3.93
4011 5880 0.324738 AGCAGCCTACAGACTAGCCA 60.325 55.000 0.00 0.00 0.00 4.75
4012 5881 0.103937 GCAGCCTACAGACTAGCCAG 59.896 60.000 0.00 0.00 0.00 4.85
4013 5882 1.479709 CAGCCTACAGACTAGCCAGT 58.520 55.000 0.00 0.00 37.87 4.00
4014 5883 1.135915 CAGCCTACAGACTAGCCAGTG 59.864 57.143 0.00 0.00 34.21 3.66
4015 5884 0.461961 GCCTACAGACTAGCCAGTGG 59.538 60.000 4.20 4.20 34.21 4.00
4023 5892 1.448540 CTAGCCAGTGGAACCAGCG 60.449 63.158 15.20 0.00 40.04 5.18
4034 5903 1.298859 GAACCAGCGATGGCGAAAGT 61.299 55.000 21.97 0.00 46.35 2.66
4059 6129 1.669115 CGGCGCCTGCATAAGCTAT 60.669 57.895 26.68 0.00 45.35 2.97
4069 6139 4.323333 CCTGCATAAGCTATGATAGTGCCT 60.323 45.833 9.42 0.00 42.74 4.75
4070 6140 4.572909 TGCATAAGCTATGATAGTGCCTG 58.427 43.478 9.42 1.72 42.74 4.85
4083 6153 1.920325 TGCCTGGTGAGGAGGAAGG 60.920 63.158 0.00 0.00 42.93 3.46
4088 6158 1.705186 CTGGTGAGGAGGAAGGGAAAA 59.295 52.381 0.00 0.00 0.00 2.29
4094 6164 1.499007 AGGAGGAAGGGAAAACTGCAA 59.501 47.619 0.00 0.00 0.00 4.08
4098 6168 3.573967 GAGGAAGGGAAAACTGCAATCAA 59.426 43.478 0.00 0.00 0.00 2.57
4102 6172 3.837355 AGGGAAAACTGCAATCAACTCT 58.163 40.909 0.00 0.00 0.00 3.24
4108 6178 1.070758 ACTGCAATCAACTCTCGTGGT 59.929 47.619 0.00 0.00 0.00 4.16
4119 6189 3.090037 ACTCTCGTGGTAGCTACAATGT 58.910 45.455 24.75 10.29 0.00 2.71
4130 6200 2.238144 AGCTACAATGTGCATCCTCACT 59.762 45.455 0.00 0.00 37.81 3.41
4132 6202 1.171308 ACAATGTGCATCCTCACTGC 58.829 50.000 0.00 0.00 40.10 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.153353 ATGGTCGCAAGTTGGTTACG 58.847 50.000 4.75 0.00 39.48 3.18
35 36 4.539726 TCTCGTAACCTTTATCCCTAGCA 58.460 43.478 0.00 0.00 0.00 3.49
54 55 6.146216 CGTCACCAGTAGTATGATTGATCTC 58.854 44.000 0.00 0.00 0.00 2.75
55 56 5.010112 CCGTCACCAGTAGTATGATTGATCT 59.990 44.000 0.00 0.00 0.00 2.75
58 59 4.021229 ACCGTCACCAGTAGTATGATTGA 58.979 43.478 0.00 0.00 0.00 2.57
80 81 4.445385 CGTATCACAATGATGCTTCGATGA 59.555 41.667 1.89 4.97 37.70 2.92
103 104 2.545742 GGGTTTGTCAAACATGTGAGGC 60.546 50.000 25.72 9.04 43.15 4.70
122 123 0.400594 ACCGAGGAGTTTTTGAGGGG 59.599 55.000 0.00 0.00 0.00 4.79
123 124 2.935676 GCTACCGAGGAGTTTTTGAGGG 60.936 54.545 0.00 0.00 0.00 4.30
132 134 2.759535 GTTAAGAAGGCTACCGAGGAGT 59.240 50.000 0.00 0.00 0.00 3.85
144 146 5.235186 CCATGTAGATGAAGCGTTAAGAAGG 59.765 44.000 0.46 0.00 0.00 3.46
154 156 7.325660 TCTTGAAATTCCATGTAGATGAAGC 57.674 36.000 0.46 0.00 0.00 3.86
161 163 6.656693 AGTGTCCTTCTTGAAATTCCATGTAG 59.343 38.462 0.00 0.00 0.00 2.74
168 170 7.627300 GCTCCATAAGTGTCCTTCTTGAAATTC 60.627 40.741 0.00 0.00 31.89 2.17
171 173 5.003804 GCTCCATAAGTGTCCTTCTTGAAA 58.996 41.667 0.00 0.00 31.89 2.69
182 184 2.099921 CACTAGAGCGCTCCATAAGTGT 59.900 50.000 31.40 20.34 37.82 3.55
187 189 1.032794 CCACACTAGAGCGCTCCATA 58.967 55.000 32.94 18.89 0.00 2.74
188 190 1.680522 CCCACACTAGAGCGCTCCAT 61.681 60.000 32.94 18.76 0.00 3.41
199 201 2.530661 CCACCCCACCCCACACTA 60.531 66.667 0.00 0.00 0.00 2.74
218 220 7.712204 TGTAGTTTTAAATTCTCAATCCCCC 57.288 36.000 0.00 0.00 0.00 5.40
219 221 8.251026 CCTTGTAGTTTTAAATTCTCAATCCCC 58.749 37.037 0.00 0.00 0.00 4.81
220 222 8.803235 ACCTTGTAGTTTTAAATTCTCAATCCC 58.197 33.333 0.00 0.00 0.00 3.85
221 223 9.626045 CACCTTGTAGTTTTAAATTCTCAATCC 57.374 33.333 0.00 0.00 0.00 3.01
225 227 9.841295 AGTACACCTTGTAGTTTTAAATTCTCA 57.159 29.630 0.00 0.00 32.93 3.27
227 229 9.841295 TCAGTACACCTTGTAGTTTTAAATTCT 57.159 29.630 0.00 0.00 34.48 2.40
228 230 9.874215 GTCAGTACACCTTGTAGTTTTAAATTC 57.126 33.333 0.00 0.00 34.48 2.17
229 231 8.553696 CGTCAGTACACCTTGTAGTTTTAAATT 58.446 33.333 0.00 0.00 34.48 1.82
230 232 7.712205 ACGTCAGTACACCTTGTAGTTTTAAAT 59.288 33.333 0.00 0.00 34.48 1.40
231 233 7.041107 ACGTCAGTACACCTTGTAGTTTTAAA 58.959 34.615 0.00 0.00 34.48 1.52
232 234 6.572519 ACGTCAGTACACCTTGTAGTTTTAA 58.427 36.000 0.00 0.00 34.48 1.52
233 235 6.147864 ACGTCAGTACACCTTGTAGTTTTA 57.852 37.500 0.00 0.00 34.48 1.52
234 236 5.014808 ACGTCAGTACACCTTGTAGTTTT 57.985 39.130 0.00 0.00 34.48 2.43
235 237 4.660789 ACGTCAGTACACCTTGTAGTTT 57.339 40.909 0.00 0.00 34.48 2.66
236 238 4.823989 ACTACGTCAGTACACCTTGTAGTT 59.176 41.667 0.00 0.26 38.19 2.24
237 239 4.392940 ACTACGTCAGTACACCTTGTAGT 58.607 43.478 0.00 10.34 36.99 2.73
238 240 4.694509 AGACTACGTCAGTACACCTTGTAG 59.305 45.833 0.00 3.48 37.72 2.74
239 241 4.645535 AGACTACGTCAGTACACCTTGTA 58.354 43.478 0.00 0.00 37.72 2.41
240 242 3.484407 AGACTACGTCAGTACACCTTGT 58.516 45.455 0.00 0.00 37.72 3.16
241 243 4.215827 AGAAGACTACGTCAGTACACCTTG 59.784 45.833 0.00 0.00 37.72 3.61
242 244 4.396522 AGAAGACTACGTCAGTACACCTT 58.603 43.478 0.00 0.00 37.72 3.50
243 245 4.018484 AGAAGACTACGTCAGTACACCT 57.982 45.455 0.00 0.00 37.72 4.00
244 246 4.455190 AGAAGAAGACTACGTCAGTACACC 59.545 45.833 0.00 0.00 37.72 4.16
245 247 5.610235 AGAAGAAGACTACGTCAGTACAC 57.390 43.478 0.00 0.00 37.72 2.90
246 248 5.562307 GCAAGAAGAAGACTACGTCAGTACA 60.562 44.000 0.00 0.00 37.72 2.90
247 249 4.852650 GCAAGAAGAAGACTACGTCAGTAC 59.147 45.833 0.00 0.00 37.72 2.73
248 250 4.517832 TGCAAGAAGAAGACTACGTCAGTA 59.482 41.667 0.00 0.00 37.72 2.74
249 251 3.318275 TGCAAGAAGAAGACTACGTCAGT 59.682 43.478 0.00 0.00 41.47 3.41
250 252 3.670991 GTGCAAGAAGAAGACTACGTCAG 59.329 47.826 0.00 0.00 34.60 3.51
251 253 3.067601 TGTGCAAGAAGAAGACTACGTCA 59.932 43.478 0.00 0.00 34.60 4.35
252 254 3.425858 GTGTGCAAGAAGAAGACTACGTC 59.574 47.826 0.00 0.00 0.00 4.34
253 255 3.381949 GTGTGCAAGAAGAAGACTACGT 58.618 45.455 0.00 0.00 0.00 3.57
254 256 2.731976 GGTGTGCAAGAAGAAGACTACG 59.268 50.000 0.00 0.00 0.00 3.51
255 257 3.991121 GAGGTGTGCAAGAAGAAGACTAC 59.009 47.826 0.00 0.00 0.00 2.73
256 258 3.898123 AGAGGTGTGCAAGAAGAAGACTA 59.102 43.478 0.00 0.00 0.00 2.59
257 259 2.703007 AGAGGTGTGCAAGAAGAAGACT 59.297 45.455 0.00 0.00 0.00 3.24
258 260 3.118905 AGAGGTGTGCAAGAAGAAGAC 57.881 47.619 0.00 0.00 0.00 3.01
259 261 3.470709 CAAGAGGTGTGCAAGAAGAAGA 58.529 45.455 0.00 0.00 0.00 2.87
260 262 2.031333 GCAAGAGGTGTGCAAGAAGAAG 60.031 50.000 0.00 0.00 41.80 2.85
261 263 1.949525 GCAAGAGGTGTGCAAGAAGAA 59.050 47.619 0.00 0.00 41.80 2.52
269 271 1.069906 CGTAAGTTGCAAGAGGTGTGC 60.070 52.381 0.00 0.00 42.55 4.57
298 300 9.993881 CATCGATATTTTGTTGTTTTGTTCTTC 57.006 29.630 0.00 0.00 0.00 2.87
332 334 6.217693 GGGAGGGGGTCTATGAATGTATATTT 59.782 42.308 0.00 0.00 0.00 1.40
340 342 2.254023 AGAAGGGAGGGGGTCTATGAAT 59.746 50.000 0.00 0.00 0.00 2.57
360 362 6.369615 CCATAAAATGCCTTCTTGGTGAAAAG 59.630 38.462 0.00 0.00 38.35 2.27
389 392 0.110486 TGGGGGCTTTGAAGAGTCAC 59.890 55.000 0.00 0.00 31.90 3.67
489 2206 3.709880 TATGTCGACCCAAGCCGCG 62.710 63.158 14.12 0.00 0.00 6.46
510 2231 2.311854 AAGCTGGGAGGGTGGATGG 61.312 63.158 0.00 0.00 0.00 3.51
515 2236 2.045536 GCTCAAGCTGGGAGGGTG 60.046 66.667 15.28 0.00 38.21 4.61
552 2276 2.567615 GGTTACTCTGCTTTCTCTCCCA 59.432 50.000 0.00 0.00 0.00 4.37
584 2308 1.377987 GCCCAATGTGCGTTCCCTA 60.378 57.895 0.00 0.00 0.00 3.53
588 2312 4.114997 CCGGCCCAATGTGCGTTC 62.115 66.667 0.00 0.00 0.00 3.95
589 2313 4.652131 TCCGGCCCAATGTGCGTT 62.652 61.111 0.00 0.00 0.00 4.84
591 2315 4.114997 GTTCCGGCCCAATGTGCG 62.115 66.667 0.00 0.00 0.00 5.34
701 2426 3.838903 AGCTTATATAAAGAGGGACCCCG 59.161 47.826 7.00 0.00 41.95 5.73
752 2477 2.113139 GGGAGGGTGGTGTGTGTG 59.887 66.667 0.00 0.00 0.00 3.82
753 2478 3.175710 GGGGAGGGTGGTGTGTGT 61.176 66.667 0.00 0.00 0.00 3.72
793 2518 1.738830 GCGGCGCAGTTTACCTGTA 60.739 57.895 29.21 0.00 43.55 2.74
895 2626 2.198406 CACGAGTTCACGACTTGGAAA 58.802 47.619 0.00 0.00 43.07 3.13
896 2627 1.537348 CCACGAGTTCACGACTTGGAA 60.537 52.381 0.00 0.00 43.07 3.53
897 2628 0.031585 CCACGAGTTCACGACTTGGA 59.968 55.000 0.00 0.00 43.07 3.53
938 2669 2.124819 ATCCAGGCAGCGCAAGAG 60.125 61.111 11.47 0.00 43.02 2.85
939 2670 2.124983 GATCCAGGCAGCGCAAGA 60.125 61.111 11.47 0.00 43.02 3.02
940 2671 2.124819 AGATCCAGGCAGCGCAAG 60.125 61.111 11.47 2.01 43.44 4.01
941 2672 2.261430 ATCAGATCCAGGCAGCGCAA 62.261 55.000 11.47 0.00 0.00 4.85
942 2673 2.738938 ATCAGATCCAGGCAGCGCA 61.739 57.895 11.47 0.00 0.00 6.09
943 2674 2.110627 ATCAGATCCAGGCAGCGC 59.889 61.111 0.00 0.00 0.00 5.92
944 2675 1.597302 CCATCAGATCCAGGCAGCG 60.597 63.158 0.00 0.00 0.00 5.18
963 2694 4.399303 CCCTGTGGATAACAAATCAGGAAC 59.601 45.833 10.10 0.00 43.28 3.62
981 2712 0.196118 TCTTCCCTTCCTTCCCCTGT 59.804 55.000 0.00 0.00 0.00 4.00
1100 2831 3.357203 TCTGCAGGTGGAGAGTAACTAG 58.643 50.000 15.13 0.00 37.60 2.57
1133 2864 7.979537 TCGACTAAACATACAAACAGAGCATAT 59.020 33.333 0.00 0.00 0.00 1.78
1153 2884 1.671328 CTCGCCTCACTTGATCGACTA 59.329 52.381 0.00 0.00 0.00 2.59
1186 2917 3.708890 CGACGCACCCAAACAGTATATA 58.291 45.455 0.00 0.00 0.00 0.86
1190 2921 1.957186 GCGACGCACCCAAACAGTA 60.957 57.895 16.42 0.00 0.00 2.74
1192 2923 2.058829 AAAGCGACGCACCCAAACAG 62.059 55.000 23.70 0.00 0.00 3.16
1259 2990 2.098770 GCGTGGATTCCTAGTTACGAGT 59.901 50.000 14.62 0.00 33.78 4.18
1321 3052 7.141363 CAGGAACTAATTGAAAACTCCAACTG 58.859 38.462 0.00 0.00 36.02 3.16
1364 3095 3.236816 CAACCATTGAGACGTGCAAATC 58.763 45.455 0.00 0.00 0.00 2.17
1382 3113 5.804979 AGCATCACAGTAACAACAAAACAAC 59.195 36.000 0.00 0.00 0.00 3.32
1398 3129 6.207221 ACATAGACATGAAAAACAGCATCACA 59.793 34.615 0.00 0.00 35.96 3.58
1400 3131 6.822667 ACATAGACATGAAAAACAGCATCA 57.177 33.333 0.00 0.00 35.96 3.07
1487 3235 4.697352 GGCATCTCTCAAGACTAGCAAAAA 59.303 41.667 0.00 0.00 33.32 1.94
1500 3248 3.490439 TCAAGTGTTTGGCATCTCTCA 57.510 42.857 0.00 0.00 34.97 3.27
1503 3251 2.229543 TGCATCAAGTGTTTGGCATCTC 59.770 45.455 0.00 0.00 34.97 2.75
1514 3262 3.358707 TTGCTGAAAGTGCATCAAGTG 57.641 42.857 0.00 0.00 40.34 3.16
1520 3268 6.764308 AGTATACATTTGCTGAAAGTGCAT 57.236 33.333 5.50 0.00 40.34 3.96
1521 3269 6.573664 AAGTATACATTTGCTGAAAGTGCA 57.426 33.333 5.50 0.00 38.80 4.57
1558 3306 8.403236 AGCTAAAAACACTACGAATTTGAAAGT 58.597 29.630 0.00 0.00 0.00 2.66
1622 3370 7.760794 TGGAAGCAGCATTAAAATATCAAACAG 59.239 33.333 0.00 0.00 0.00 3.16
1631 3379 5.927281 ATGACTGGAAGCAGCATTAAAAT 57.073 34.783 0.00 0.00 37.60 1.82
1632 3380 5.472148 CAATGACTGGAAGCAGCATTAAAA 58.528 37.500 0.00 0.00 37.60 1.52
1635 3383 2.424601 GCAATGACTGGAAGCAGCATTA 59.575 45.455 0.00 0.00 37.60 1.90
1679 3427 9.071276 AGGCAAATATTAGATTGACATACCAAG 57.929 33.333 0.00 0.00 37.01 3.61
1683 3431 9.277783 AGACAGGCAAATATTAGATTGACATAC 57.722 33.333 0.00 0.00 37.01 2.39
1783 3531 3.882444 CACAATGTGAGTCATCCCAGAT 58.118 45.455 7.78 0.00 35.23 2.90
1784 3532 2.616256 GCACAATGTGAGTCATCCCAGA 60.616 50.000 18.66 0.00 35.23 3.86
1874 3622 3.824001 TGGTGGGAAGGAATCAATTGA 57.176 42.857 11.26 11.26 0.00 2.57
1907 3655 4.322080 TCTGTAACGATAGAGGGCATTG 57.678 45.455 0.00 0.00 41.38 2.82
1913 3661 7.258441 TGATTCAACTTCTGTAACGATAGAGG 58.742 38.462 0.00 0.00 41.38 3.69
1914 3662 8.750416 CATGATTCAACTTCTGTAACGATAGAG 58.250 37.037 0.00 0.00 41.38 2.43
1919 3667 7.819415 AGATTCATGATTCAACTTCTGTAACGA 59.181 33.333 17.49 0.00 0.00 3.85
1949 3697 9.294030 CAGCCATTTACAAATTCAAATAGAGTC 57.706 33.333 0.00 0.00 0.00 3.36
2008 3760 0.469494 TTCTTGTGCAGCTCTGTGGA 59.531 50.000 0.00 0.00 0.00 4.02
2019 3771 2.740981 CTCACATGTCTCCTTCTTGTGC 59.259 50.000 0.00 0.00 39.30 4.57
2130 3882 1.196766 TGAGATGCTGTGCCCAGACT 61.197 55.000 0.00 0.00 41.50 3.24
2247 3999 6.379133 TCTCAAGCTGCATATGGATTTCTTTT 59.621 34.615 4.56 0.00 0.00 2.27
2259 4011 5.349061 TCTTCATCTTCTCAAGCTGCATA 57.651 39.130 1.02 0.00 0.00 3.14
2420 4185 3.080319 GTGAGCCTTCTTCTGCTTCAAT 58.920 45.455 0.00 0.00 38.11 2.57
2500 4265 3.244735 AGGGACTTCCTTCTCAAAGAAGC 60.245 47.826 10.55 0.00 43.42 3.86
2522 4287 6.647334 TCCTTTTGAAACACAGCATCAATA 57.353 33.333 0.00 0.00 33.45 1.90
2534 4299 7.596494 TGTCAATCATCTCATCCTTTTGAAAC 58.404 34.615 0.00 0.00 0.00 2.78
2537 4302 7.563888 GATGTCAATCATCTCATCCTTTTGA 57.436 36.000 0.00 0.00 46.64 2.69
2831 4596 9.998106 AAAGTACATAGATGACAAACTAACACT 57.002 29.630 0.00 0.00 0.00 3.55
2837 4602 7.680730 ACCAGAAAGTACATAGATGACAAACT 58.319 34.615 0.00 0.00 0.00 2.66
2887 4652 5.047802 CCTGTAAGATCAAACCAGTGCAAAT 60.048 40.000 0.00 0.00 34.07 2.32
3179 4944 5.428496 AAATGATACAACTGATGATGCGG 57.572 39.130 0.00 0.00 0.00 5.69
3193 4958 8.207252 CACATGTTCGTTTTGACAAAATGATAC 58.793 33.333 27.77 25.37 43.66 2.24
3257 5022 4.456911 TGAGCCAGATTCTGAAAACATCAC 59.543 41.667 15.36 0.00 32.44 3.06
3364 5129 3.015327 GGCAAGCAGACTCATTTCAGAT 58.985 45.455 0.00 0.00 0.00 2.90
3377 5142 3.733443 AACAACCTTTTAGGCAAGCAG 57.267 42.857 0.00 0.00 39.63 4.24
3398 5163 3.565482 TCAAAGCTCGCAGAAAACAAGAT 59.435 39.130 0.00 0.00 34.09 2.40
3399 5164 2.942376 TCAAAGCTCGCAGAAAACAAGA 59.058 40.909 0.00 0.00 34.09 3.02
3400 5165 3.338818 TCAAAGCTCGCAGAAAACAAG 57.661 42.857 0.00 0.00 34.09 3.16
3401 5166 3.489059 CCTTCAAAGCTCGCAGAAAACAA 60.489 43.478 0.00 0.00 34.09 2.83
3432 5198 4.555262 ACGGTAACAATGAAAATGGCTTG 58.445 39.130 0.00 0.00 0.00 4.01
3459 5225 7.519970 CGAACAAGCTGACCTAATTTTAACAGT 60.520 37.037 0.00 0.00 0.00 3.55
3466 5232 4.452455 CACTCGAACAAGCTGACCTAATTT 59.548 41.667 0.00 0.00 0.00 1.82
3476 5242 0.464036 TGTGGTCACTCGAACAAGCT 59.536 50.000 2.66 0.00 41.63 3.74
3482 5248 1.967779 TCCTTCATGTGGTCACTCGAA 59.032 47.619 2.66 4.62 0.00 3.71
3483 5249 1.627864 TCCTTCATGTGGTCACTCGA 58.372 50.000 2.66 0.00 0.00 4.04
3484 5250 2.455674 TTCCTTCATGTGGTCACTCG 57.544 50.000 2.66 0.00 0.00 4.18
3485 5251 3.058914 CGTTTTCCTTCATGTGGTCACTC 60.059 47.826 2.66 0.00 0.00 3.51
3486 5252 2.878406 CGTTTTCCTTCATGTGGTCACT 59.122 45.455 2.66 0.00 0.00 3.41
3488 5254 3.201353 TCGTTTTCCTTCATGTGGTCA 57.799 42.857 7.23 0.00 0.00 4.02
3489 5255 4.215399 TGAATCGTTTTCCTTCATGTGGTC 59.785 41.667 7.23 0.00 0.00 4.02
3490 5256 4.023193 GTGAATCGTTTTCCTTCATGTGGT 60.023 41.667 7.23 0.00 32.05 4.16
3491 5257 4.023279 TGTGAATCGTTTTCCTTCATGTGG 60.023 41.667 0.00 0.00 32.05 4.17
3492 5258 5.107109 TGTGAATCGTTTTCCTTCATGTG 57.893 39.130 0.00 0.00 32.05 3.21
3493 5259 5.390885 CGATGTGAATCGTTTTCCTTCATGT 60.391 40.000 0.04 0.00 39.07 3.21
3494 5260 5.023920 CGATGTGAATCGTTTTCCTTCATG 58.976 41.667 0.04 0.00 39.07 3.07
3495 5261 4.094887 CCGATGTGAATCGTTTTCCTTCAT 59.905 41.667 7.28 0.00 42.07 2.57
3496 5262 3.435327 CCGATGTGAATCGTTTTCCTTCA 59.565 43.478 7.28 0.00 42.07 3.02
3498 5264 3.408634 ACCGATGTGAATCGTTTTCCTT 58.591 40.909 7.28 0.00 42.07 3.36
3500 5266 2.222729 CGACCGATGTGAATCGTTTTCC 60.223 50.000 7.28 0.00 42.07 3.13
3501 5267 2.664568 TCGACCGATGTGAATCGTTTTC 59.335 45.455 7.28 0.93 42.07 2.29
3504 5270 2.579207 ATCGACCGATGTGAATCGTT 57.421 45.000 3.91 0.00 42.07 3.85
3505 5271 2.193447 CAATCGACCGATGTGAATCGT 58.807 47.619 5.62 0.00 42.07 3.73
3507 5273 3.182572 GCTACAATCGACCGATGTGAATC 59.817 47.826 5.62 0.00 34.70 2.52
3508 5274 3.123804 GCTACAATCGACCGATGTGAAT 58.876 45.455 5.62 0.00 34.70 2.57
3509 5275 2.536365 GCTACAATCGACCGATGTGAA 58.464 47.619 5.62 0.00 34.70 3.18
3510 5276 1.533129 CGCTACAATCGACCGATGTGA 60.533 52.381 5.62 0.00 34.70 3.58
3513 5279 1.548973 GGCGCTACAATCGACCGATG 61.549 60.000 7.64 3.53 34.70 3.84
3514 5280 1.299926 GGCGCTACAATCGACCGAT 60.300 57.895 7.64 0.00 36.23 4.18
3516 5282 3.320078 CGGCGCTACAATCGACCG 61.320 66.667 7.64 0.00 39.02 4.79
3520 5319 3.320078 CGACCGGCGCTACAATCG 61.320 66.667 7.64 6.53 0.00 3.34
3534 5333 1.142778 GATGAGGACGAGCAAGCGAC 61.143 60.000 0.00 0.00 34.83 5.19
3544 5343 0.526524 GCGACCAAGAGATGAGGACG 60.527 60.000 0.00 0.00 42.06 4.79
3545 5344 0.532573 TGCGACCAAGAGATGAGGAC 59.467 55.000 0.00 0.00 0.00 3.85
3546 5345 0.532573 GTGCGACCAAGAGATGAGGA 59.467 55.000 0.00 0.00 0.00 3.71
3547 5346 0.803768 CGTGCGACCAAGAGATGAGG 60.804 60.000 0.00 0.00 0.00 3.86
3548 5347 1.416813 GCGTGCGACCAAGAGATGAG 61.417 60.000 0.00 0.00 0.00 2.90
3549 5348 1.446099 GCGTGCGACCAAGAGATGA 60.446 57.895 0.00 0.00 0.00 2.92
3550 5349 1.416813 GAGCGTGCGACCAAGAGATG 61.417 60.000 0.00 0.00 0.00 2.90
3593 5392 3.314553 CAAGAAACAAGCATCCAAGCAG 58.685 45.455 0.00 0.00 36.85 4.24
3594 5393 2.036217 CCAAGAAACAAGCATCCAAGCA 59.964 45.455 0.00 0.00 36.85 3.91
3596 5395 2.680577 GCCAAGAAACAAGCATCCAAG 58.319 47.619 0.00 0.00 0.00 3.61
3603 5402 0.110010 GAGCTCGCCAAGAAACAAGC 60.110 55.000 0.00 0.00 0.00 4.01
3604 5403 0.519077 GGAGCTCGCCAAGAAACAAG 59.481 55.000 7.83 0.00 0.00 3.16
3605 5404 0.889186 GGGAGCTCGCCAAGAAACAA 60.889 55.000 19.61 0.00 0.00 2.83
3606 5405 1.302511 GGGAGCTCGCCAAGAAACA 60.303 57.895 19.61 0.00 0.00 2.83
3607 5406 0.249398 TAGGGAGCTCGCCAAGAAAC 59.751 55.000 25.68 0.00 0.00 2.78
3608 5407 0.249398 GTAGGGAGCTCGCCAAGAAA 59.751 55.000 25.68 3.64 0.00 2.52
3609 5408 0.614979 AGTAGGGAGCTCGCCAAGAA 60.615 55.000 25.68 5.36 0.00 2.52
3610 5409 1.000486 AGTAGGGAGCTCGCCAAGA 60.000 57.895 25.68 7.59 0.00 3.02
3611 5410 1.142748 CAGTAGGGAGCTCGCCAAG 59.857 63.158 25.68 10.84 0.00 3.61
3612 5411 2.359169 CCAGTAGGGAGCTCGCCAA 61.359 63.158 25.68 12.77 40.01 4.52
3613 5412 2.759973 CCAGTAGGGAGCTCGCCA 60.760 66.667 25.68 11.24 40.01 5.69
3614 5413 4.228567 GCCAGTAGGGAGCTCGCC 62.229 72.222 25.68 18.48 40.01 5.54
3615 5414 4.228567 GGCCAGTAGGGAGCTCGC 62.229 72.222 22.44 22.44 40.01 5.03
3616 5415 2.759973 TGGCCAGTAGGGAGCTCG 60.760 66.667 0.00 0.00 40.01 5.03
3617 5416 2.736826 GGTGGCCAGTAGGGAGCTC 61.737 68.421 5.11 4.71 40.01 4.09
3618 5417 2.689034 GGTGGCCAGTAGGGAGCT 60.689 66.667 5.11 0.00 40.01 4.09
3619 5418 2.689034 AGGTGGCCAGTAGGGAGC 60.689 66.667 5.11 0.00 40.01 4.70
3620 5419 2.066999 GGAGGTGGCCAGTAGGGAG 61.067 68.421 5.11 0.00 40.01 4.30
3621 5420 2.040606 GGAGGTGGCCAGTAGGGA 59.959 66.667 5.11 0.00 40.01 4.20
3622 5421 1.923395 TTGGAGGTGGCCAGTAGGG 60.923 63.158 5.11 0.00 39.52 3.53
3623 5422 1.299976 GTTGGAGGTGGCCAGTAGG 59.700 63.158 5.11 0.00 39.52 3.18
3624 5423 1.299976 GGTTGGAGGTGGCCAGTAG 59.700 63.158 5.11 0.00 39.52 2.57
3628 5427 2.863484 ATGGGTTGGAGGTGGCCA 60.863 61.111 0.00 0.00 35.78 5.36
3639 5438 3.111265 AGCCAAGAGAGGATGGGTT 57.889 52.632 0.00 0.00 44.67 4.11
3640 5439 4.928981 AGCCAAGAGAGGATGGGT 57.071 55.556 0.00 0.00 42.36 4.51
3645 5444 0.891373 CGAGACAAGCCAAGAGAGGA 59.109 55.000 0.00 0.00 0.00 3.71
3646 5445 0.605589 ACGAGACAAGCCAAGAGAGG 59.394 55.000 0.00 0.00 0.00 3.69
3647 5446 2.447244 AACGAGACAAGCCAAGAGAG 57.553 50.000 0.00 0.00 0.00 3.20
3648 5447 2.365617 AGAAACGAGACAAGCCAAGAGA 59.634 45.455 0.00 0.00 0.00 3.10
3649 5448 2.760374 AGAAACGAGACAAGCCAAGAG 58.240 47.619 0.00 0.00 0.00 2.85
3650 5449 2.872245 CAAGAAACGAGACAAGCCAAGA 59.128 45.455 0.00 0.00 0.00 3.02
3651 5450 2.031682 CCAAGAAACGAGACAAGCCAAG 60.032 50.000 0.00 0.00 0.00 3.61
3652 5451 1.946768 CCAAGAAACGAGACAAGCCAA 59.053 47.619 0.00 0.00 0.00 4.52
3653 5452 1.593196 CCAAGAAACGAGACAAGCCA 58.407 50.000 0.00 0.00 0.00 4.75
3654 5453 0.238553 GCCAAGAAACGAGACAAGCC 59.761 55.000 0.00 0.00 0.00 4.35
3655 5454 0.110644 CGCCAAGAAACGAGACAAGC 60.111 55.000 0.00 0.00 0.00 4.01
3656 5455 1.497991 TCGCCAAGAAACGAGACAAG 58.502 50.000 0.00 0.00 33.69 3.16
3657 5456 3.671262 TCGCCAAGAAACGAGACAA 57.329 47.368 0.00 0.00 33.69 3.18
3662 5461 1.374252 GGAGCTCGCCAAGAAACGA 60.374 57.895 7.83 0.00 36.73 3.85
3663 5462 1.355066 GAGGAGCTCGCCAAGAAACG 61.355 60.000 7.83 0.00 0.00 3.60
3664 5463 1.021920 GGAGGAGCTCGCCAAGAAAC 61.022 60.000 16.82 0.00 35.24 2.78
3665 5464 1.296715 GGAGGAGCTCGCCAAGAAA 59.703 57.895 16.82 0.00 35.24 2.52
3666 5465 2.660064 GGGAGGAGCTCGCCAAGAA 61.660 63.158 21.48 0.00 37.45 2.52
3667 5466 3.077556 GGGAGGAGCTCGCCAAGA 61.078 66.667 21.48 0.00 37.45 3.02
3672 5471 3.844090 GACAGGGGAGGAGCTCGC 61.844 72.222 7.83 1.84 41.74 5.03
3673 5472 3.151022 GGACAGGGGAGGAGCTCG 61.151 72.222 7.83 0.00 0.00 5.03
3674 5473 2.766229 GGGACAGGGGAGGAGCTC 60.766 72.222 4.71 4.71 0.00 4.09
3675 5474 4.423209 GGGGACAGGGGAGGAGCT 62.423 72.222 0.00 0.00 0.00 4.09
3677 5476 2.789979 AAAGGGGGACAGGGGAGGAG 62.790 65.000 0.00 0.00 0.00 3.69
3678 5477 2.824856 AAAGGGGGACAGGGGAGGA 61.825 63.158 0.00 0.00 0.00 3.71
3679 5478 2.204306 AAAGGGGGACAGGGGAGG 60.204 66.667 0.00 0.00 0.00 4.30
3680 5479 3.090765 CAAAGGGGGACAGGGGAG 58.909 66.667 0.00 0.00 0.00 4.30
3681 5480 2.424989 TAGCAAAGGGGGACAGGGGA 62.425 60.000 0.00 0.00 0.00 4.81
3682 5481 1.506028 TTAGCAAAGGGGGACAGGGG 61.506 60.000 0.00 0.00 0.00 4.79
3683 5482 0.323451 GTTAGCAAAGGGGGACAGGG 60.323 60.000 0.00 0.00 0.00 4.45
3684 5483 0.698818 AGTTAGCAAAGGGGGACAGG 59.301 55.000 0.00 0.00 0.00 4.00
3685 5484 1.351017 TGAGTTAGCAAAGGGGGACAG 59.649 52.381 0.00 0.00 0.00 3.51
3686 5485 1.073284 GTGAGTTAGCAAAGGGGGACA 59.927 52.381 0.00 0.00 0.00 4.02
3687 5486 1.822506 GTGAGTTAGCAAAGGGGGAC 58.177 55.000 0.00 0.00 0.00 4.46
3691 5490 1.197721 CAAGCGTGAGTTAGCAAAGGG 59.802 52.381 0.00 0.00 35.48 3.95
3692 5491 1.400242 GCAAGCGTGAGTTAGCAAAGG 60.400 52.381 2.99 0.00 35.48 3.11
3697 5496 0.093705 CGAAGCAAGCGTGAGTTAGC 59.906 55.000 2.99 0.00 0.00 3.09
3717 5516 0.754957 AGACGAGCCAGAGAGGATGG 60.755 60.000 0.00 0.00 41.22 3.51
3718 5517 0.667993 GAGACGAGCCAGAGAGGATG 59.332 60.000 0.00 0.00 41.22 3.51
3719 5518 0.817634 CGAGACGAGCCAGAGAGGAT 60.818 60.000 0.00 0.00 41.22 3.24
3720 5519 1.450491 CGAGACGAGCCAGAGAGGA 60.450 63.158 0.00 0.00 41.22 3.71
3721 5520 1.309499 AACGAGACGAGCCAGAGAGG 61.309 60.000 0.00 0.00 41.84 3.69
3722 5521 0.523966 AAACGAGACGAGCCAGAGAG 59.476 55.000 0.00 0.00 0.00 3.20
3723 5522 0.522180 GAAACGAGACGAGCCAGAGA 59.478 55.000 0.00 0.00 0.00 3.10
3725 5524 0.959553 AAGAAACGAGACGAGCCAGA 59.040 50.000 0.00 0.00 0.00 3.86
3728 5527 1.627550 GCCAAGAAACGAGACGAGCC 61.628 60.000 0.00 0.00 0.00 4.70
3731 5530 1.655885 TCGCCAAGAAACGAGACGA 59.344 52.632 0.00 0.00 33.69 4.20
3732 5531 4.238385 TCGCCAAGAAACGAGACG 57.762 55.556 0.00 0.00 33.69 4.18
3738 5537 2.982744 GCAGGGCTCGCCAAGAAAC 61.983 63.158 10.51 0.00 37.98 2.78
3746 5545 2.911221 AAAATAGGGGCAGGGCTCGC 62.911 60.000 0.00 0.00 0.00 5.03
3747 5546 0.395724 AAAAATAGGGGCAGGGCTCG 60.396 55.000 0.00 0.00 0.00 5.03
3748 5547 1.114627 CAAAAATAGGGGCAGGGCTC 58.885 55.000 0.00 0.00 0.00 4.70
3749 5548 0.709992 TCAAAAATAGGGGCAGGGCT 59.290 50.000 0.00 0.00 0.00 5.19
3750 5549 1.207089 GTTCAAAAATAGGGGCAGGGC 59.793 52.381 0.00 0.00 0.00 5.19
3752 5551 3.193479 GTGAGTTCAAAAATAGGGGCAGG 59.807 47.826 0.00 0.00 0.00 4.85
3753 5552 3.119849 CGTGAGTTCAAAAATAGGGGCAG 60.120 47.826 0.00 0.00 0.00 4.85
3754 5553 2.817258 CGTGAGTTCAAAAATAGGGGCA 59.183 45.455 0.00 0.00 0.00 5.36
3755 5554 2.817844 ACGTGAGTTCAAAAATAGGGGC 59.182 45.455 0.00 0.00 46.40 5.80
3782 5581 0.032615 AGGAGCCGAGAGAGAATGGT 60.033 55.000 0.00 0.00 0.00 3.55
3836 5705 2.416747 GTGAGTATGCACACTTCAGCA 58.583 47.619 0.00 0.00 45.92 4.41
3839 5708 1.343142 ACGGTGAGTATGCACACTTCA 59.657 47.619 0.00 0.00 40.52 3.02
3841 5710 2.143122 CAACGGTGAGTATGCACACTT 58.857 47.619 0.00 0.00 40.52 3.16
3851 5720 1.215647 GCGGAGATCAACGGTGAGT 59.784 57.895 9.97 0.00 37.14 3.41
3856 5725 0.877649 CTCATGGCGGAGATCAACGG 60.878 60.000 10.43 2.94 37.05 4.44
3921 5790 1.369625 GTTCTAGCAATGGTGGACCG 58.630 55.000 0.00 0.00 39.43 4.79
3937 5806 2.281484 TCCGCCACTTGCTGGTTC 60.281 61.111 0.00 0.00 42.99 3.62
3938 5807 2.281761 CTCCGCCACTTGCTGGTT 60.282 61.111 0.00 0.00 42.99 3.67
3940 5809 4.711949 AGCTCCGCCACTTGCTGG 62.712 66.667 0.00 0.00 44.08 4.85
3941 5810 2.670934 AAGCTCCGCCACTTGCTG 60.671 61.111 0.00 0.00 38.05 4.41
3942 5811 2.670934 CAAGCTCCGCCACTTGCT 60.671 61.111 0.00 0.00 37.11 3.91
3943 5812 2.970974 GACAAGCTCCGCCACTTGC 61.971 63.158 8.81 0.00 45.74 4.01
3944 5813 1.597854 TGACAAGCTCCGCCACTTG 60.598 57.895 7.68 7.68 46.91 3.16
3945 5814 1.598130 GTGACAAGCTCCGCCACTT 60.598 57.895 0.00 0.00 0.00 3.16
3946 5815 2.031163 GTGACAAGCTCCGCCACT 59.969 61.111 0.00 0.00 0.00 4.00
3947 5816 3.050275 GGTGACAAGCTCCGCCAC 61.050 66.667 8.03 2.05 33.37 5.01
3948 5817 3.555324 TGGTGACAAGCTCCGCCA 61.555 61.111 10.73 10.73 40.30 5.69
3958 5827 1.619654 CTGCCCATCTTTTGGTGACA 58.380 50.000 0.00 0.00 44.83 3.58
3959 5828 0.890683 CCTGCCCATCTTTTGGTGAC 59.109 55.000 0.00 0.00 44.83 3.67
3960 5829 0.899717 GCCTGCCCATCTTTTGGTGA 60.900 55.000 0.00 0.00 44.83 4.02
3961 5830 1.593265 GCCTGCCCATCTTTTGGTG 59.407 57.895 0.00 0.00 44.83 4.17
3962 5831 1.610379 GGCCTGCCCATCTTTTGGT 60.610 57.895 0.00 0.00 44.83 3.67
3963 5832 1.193462 TTGGCCTGCCCATCTTTTGG 61.193 55.000 3.32 0.00 44.89 3.28
3964 5833 0.686224 TTTGGCCTGCCCATCTTTTG 59.314 50.000 3.32 0.00 44.89 2.44
3965 5834 0.978907 CTTTGGCCTGCCCATCTTTT 59.021 50.000 3.32 0.00 44.89 2.27
3966 5835 0.114954 TCTTTGGCCTGCCCATCTTT 59.885 50.000 3.32 0.00 44.89 2.52
3967 5836 0.324091 CTCTTTGGCCTGCCCATCTT 60.324 55.000 3.32 0.00 44.89 2.40
3968 5837 1.210204 TCTCTTTGGCCTGCCCATCT 61.210 55.000 3.32 0.00 44.89 2.90
3969 5838 0.323725 TTCTCTTTGGCCTGCCCATC 60.324 55.000 3.32 0.00 44.89 3.51
3970 5839 0.324091 CTTCTCTTTGGCCTGCCCAT 60.324 55.000 3.32 0.00 44.89 4.00
3971 5840 1.075482 CTTCTCTTTGGCCTGCCCA 59.925 57.895 3.32 0.00 43.51 5.36
3972 5841 0.251341 TTCTTCTCTTTGGCCTGCCC 60.251 55.000 3.32 0.00 34.56 5.36
3973 5842 1.543358 CTTTCTTCTCTTTGGCCTGCC 59.457 52.381 3.32 0.00 0.00 4.85
3974 5843 1.067985 GCTTTCTTCTCTTTGGCCTGC 60.068 52.381 3.32 0.00 0.00 4.85
3975 5844 2.228343 CTGCTTTCTTCTCTTTGGCCTG 59.772 50.000 3.32 0.00 0.00 4.85
3976 5845 2.512705 CTGCTTTCTTCTCTTTGGCCT 58.487 47.619 3.32 0.00 0.00 5.19
3977 5846 1.067985 GCTGCTTTCTTCTCTTTGGCC 60.068 52.381 0.00 0.00 0.00 5.36
3978 5847 1.067985 GGCTGCTTTCTTCTCTTTGGC 60.068 52.381 0.00 0.00 0.00 4.52
3979 5848 2.512705 AGGCTGCTTTCTTCTCTTTGG 58.487 47.619 0.00 0.00 0.00 3.28
3980 5849 4.067896 TGTAGGCTGCTTTCTTCTCTTTG 58.932 43.478 3.77 0.00 0.00 2.77
3981 5850 4.040952 TCTGTAGGCTGCTTTCTTCTCTTT 59.959 41.667 3.77 0.00 0.00 2.52
3982 5851 3.580458 TCTGTAGGCTGCTTTCTTCTCTT 59.420 43.478 3.77 0.00 0.00 2.85
3983 5852 3.056179 GTCTGTAGGCTGCTTTCTTCTCT 60.056 47.826 3.77 0.00 0.00 3.10
3984 5853 3.056179 AGTCTGTAGGCTGCTTTCTTCTC 60.056 47.826 3.77 0.00 0.00 2.87
3985 5854 2.903135 AGTCTGTAGGCTGCTTTCTTCT 59.097 45.455 3.77 0.00 0.00 2.85
3986 5855 3.326836 AGTCTGTAGGCTGCTTTCTTC 57.673 47.619 3.77 0.00 0.00 2.87
3987 5856 3.368948 GCTAGTCTGTAGGCTGCTTTCTT 60.369 47.826 3.77 0.00 0.00 2.52
3988 5857 2.167487 GCTAGTCTGTAGGCTGCTTTCT 59.833 50.000 3.77 2.20 0.00 2.52
3989 5858 2.545731 GCTAGTCTGTAGGCTGCTTTC 58.454 52.381 3.77 0.00 0.00 2.62
3990 5859 1.208293 GGCTAGTCTGTAGGCTGCTTT 59.792 52.381 3.77 0.00 37.18 3.51
3991 5860 0.827368 GGCTAGTCTGTAGGCTGCTT 59.173 55.000 3.77 0.00 37.18 3.91
3992 5861 0.324738 TGGCTAGTCTGTAGGCTGCT 60.325 55.000 3.77 0.00 40.33 4.24
3993 5862 0.103937 CTGGCTAGTCTGTAGGCTGC 59.896 60.000 0.00 0.00 40.33 5.25
3994 5863 1.135915 CACTGGCTAGTCTGTAGGCTG 59.864 57.143 6.55 9.88 42.10 4.85
3995 5864 1.479709 CACTGGCTAGTCTGTAGGCT 58.520 55.000 6.55 0.00 40.33 4.58
3996 5865 0.461961 CCACTGGCTAGTCTGTAGGC 59.538 60.000 6.55 0.00 40.12 3.93
3997 5866 2.145397 TCCACTGGCTAGTCTGTAGG 57.855 55.000 6.55 10.62 34.07 3.18
3998 5867 2.166664 GGTTCCACTGGCTAGTCTGTAG 59.833 54.545 6.55 0.00 34.07 2.74
3999 5868 2.176889 GGTTCCACTGGCTAGTCTGTA 58.823 52.381 6.55 0.00 34.07 2.74
4000 5869 0.977395 GGTTCCACTGGCTAGTCTGT 59.023 55.000 0.00 0.33 34.07 3.41
4001 5870 0.976641 TGGTTCCACTGGCTAGTCTG 59.023 55.000 0.00 0.00 34.07 3.51
4002 5871 1.270907 CTGGTTCCACTGGCTAGTCT 58.729 55.000 0.00 0.00 34.07 3.24
4003 5872 0.391793 GCTGGTTCCACTGGCTAGTC 60.392 60.000 0.00 0.00 34.07 2.59
4004 5873 1.679898 GCTGGTTCCACTGGCTAGT 59.320 57.895 0.00 0.00 37.75 2.57
4005 5874 1.448540 CGCTGGTTCCACTGGCTAG 60.449 63.158 0.00 0.00 0.00 3.42
4006 5875 1.264749 ATCGCTGGTTCCACTGGCTA 61.265 55.000 0.00 0.00 0.00 3.93
4007 5876 2.596851 ATCGCTGGTTCCACTGGCT 61.597 57.895 0.00 0.00 0.00 4.75
4008 5877 2.045926 ATCGCTGGTTCCACTGGC 60.046 61.111 0.00 0.00 0.00 4.85
4009 5878 1.746615 CCATCGCTGGTTCCACTGG 60.747 63.158 0.00 0.00 37.79 4.00
4010 5879 2.401766 GCCATCGCTGGTTCCACTG 61.402 63.158 7.21 0.00 45.10 3.66
4011 5880 2.045926 GCCATCGCTGGTTCCACT 60.046 61.111 7.21 0.00 45.10 4.00
4012 5881 3.499737 CGCCATCGCTGGTTCCAC 61.500 66.667 7.21 0.00 45.10 4.02
4013 5882 2.739849 TTTCGCCATCGCTGGTTCCA 62.740 55.000 7.21 0.00 45.10 3.53
4014 5883 1.982073 CTTTCGCCATCGCTGGTTCC 61.982 60.000 7.21 0.00 45.10 3.62
4015 5884 1.298859 ACTTTCGCCATCGCTGGTTC 61.299 55.000 7.21 0.00 45.10 3.62
4023 5892 0.729140 CGGTTGCAACTTTCGCCATC 60.729 55.000 27.64 7.96 0.00 3.51
4059 6129 1.489481 CTCCTCACCAGGCACTATCA 58.511 55.000 0.00 0.00 40.12 2.15
4069 6139 1.423921 GTTTTCCCTTCCTCCTCACCA 59.576 52.381 0.00 0.00 0.00 4.17
4070 6140 1.705745 AGTTTTCCCTTCCTCCTCACC 59.294 52.381 0.00 0.00 0.00 4.02
4083 6153 3.251004 ACGAGAGTTGATTGCAGTTTTCC 59.749 43.478 0.00 0.00 46.40 3.13
4088 6158 1.070758 ACCACGAGAGTTGATTGCAGT 59.929 47.619 0.00 0.00 46.40 4.40
4094 6164 3.353557 TGTAGCTACCACGAGAGTTGAT 58.646 45.455 21.01 0.00 46.40 2.57
4102 6172 1.273886 TGCACATTGTAGCTACCACGA 59.726 47.619 21.01 5.24 0.00 4.35
4108 6178 3.452264 AGTGAGGATGCACATTGTAGCTA 59.548 43.478 0.00 0.00 41.19 3.32
4119 6189 1.138464 GAGATCAGCAGTGAGGATGCA 59.862 52.381 0.00 0.00 46.31 3.96
4130 6200 3.068064 TCGTGGCGGAGATCAGCA 61.068 61.111 7.26 0.00 38.83 4.41
4132 6202 1.226802 CACTCGTGGCGGAGATCAG 60.227 63.158 11.73 0.00 37.49 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.