Multiple sequence alignment - TraesCS4A01G207900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G207900 chr4A 100.000 6217 0 0 1 6217 501130860 501124644 0.000000e+00 11481.0
1 TraesCS4A01G207900 chr4A 76.677 313 56 9 4431 4742 501126260 501125964 2.320000e-34 158.0
2 TraesCS4A01G207900 chr4A 76.677 313 56 9 4601 4897 501126430 501126119 2.320000e-34 158.0
3 TraesCS4A01G207900 chr4D 91.419 2762 139 50 679 3371 88149586 88146854 0.000000e+00 3698.0
4 TraesCS4A01G207900 chr4D 92.054 1548 82 18 4053 5569 88144733 88143196 0.000000e+00 2139.0
5 TraesCS4A01G207900 chr4D 93.976 581 19 4 5643 6217 88143170 88142600 0.000000e+00 865.0
6 TraesCS4A01G207900 chr4D 97.867 375 8 0 3405 3779 88146853 88146479 0.000000e+00 649.0
7 TraesCS4A01G207900 chr4D 84.839 310 32 10 374 673 88150727 88150423 1.310000e-76 298.0
8 TraesCS4A01G207900 chr4D 78.248 331 56 10 4582 4897 88144377 88144048 1.370000e-46 198.0
9 TraesCS4A01G207900 chr4B 88.233 2167 152 50 153 2254 124924712 124922584 0.000000e+00 2494.0
10 TraesCS4A01G207900 chr4B 91.097 1741 77 38 3923 5626 124920145 124918446 0.000000e+00 2285.0
11 TraesCS4A01G207900 chr4B 95.533 1388 50 6 2400 3779 124921766 124920383 0.000000e+00 2209.0
12 TraesCS4A01G207900 chr4B 95.478 575 26 0 5643 6217 124918461 124917887 0.000000e+00 918.0
13 TraesCS4A01G207900 chr4B 81.852 270 40 7 2030 2299 417139916 417140176 1.050000e-52 219.0
14 TraesCS4A01G207900 chr4B 77.244 312 55 9 4601 4897 124919636 124919326 1.070000e-37 169.0
15 TraesCS4A01G207900 chr4B 89.394 66 6 1 2252 2317 124921864 124921800 1.440000e-11 82.4
16 TraesCS4A01G207900 chr1B 81.324 423 54 18 2042 2445 288400949 288401365 2.800000e-83 320.0
17 TraesCS4A01G207900 chr1B 74.043 235 47 10 470 696 141126876 141127104 3.990000e-12 84.2
18 TraesCS4A01G207900 chr5A 80.851 282 49 4 2510 2789 512778669 512778391 3.770000e-52 217.0
19 TraesCS4A01G207900 chr5A 81.298 262 45 3 2510 2769 512776712 512776453 6.320000e-50 209.0
20 TraesCS4A01G207900 chr5A 83.099 213 22 11 2025 2228 634499657 634499450 1.380000e-41 182.0
21 TraesCS4A01G207900 chr5A 78.646 192 28 9 512 696 573080295 573080480 1.420000e-21 115.0
22 TraesCS4A01G207900 chr3A 81.923 260 41 5 2510 2766 730211921 730212177 1.360000e-51 215.0
23 TraesCS4A01G207900 chr3A 89.552 134 11 3 3763 3896 638983631 638983761 3.850000e-37 167.0
24 TraesCS4A01G207900 chr2A 81.679 262 44 3 2510 2769 100124320 100124061 1.360000e-51 215.0
25 TraesCS4A01G207900 chr2A 75.962 208 30 16 2255 2447 31388537 31388739 8.580000e-14 89.8
26 TraesCS4A01G207900 chr6D 81.034 290 36 11 2025 2299 338738532 338738247 4.880000e-51 213.0
27 TraesCS4A01G207900 chr5D 96.639 119 3 1 3778 3896 385720541 385720424 4.920000e-46 196.0
28 TraesCS4A01G207900 chr5D 79.915 234 34 10 470 696 350232060 350232287 6.450000e-35 159.0
29 TraesCS4A01G207900 chr7A 85.052 194 24 5 2027 2219 664370858 664370669 6.360000e-45 193.0
30 TraesCS4A01G207900 chr7A 91.473 129 8 3 3771 3898 375886486 375886612 2.300000e-39 174.0
31 TraesCS4A01G207900 chr7A 74.419 215 39 10 2170 2371 661295522 661295311 1.860000e-10 78.7
32 TraesCS4A01G207900 chr3B 78.176 307 54 11 2004 2307 390917165 390916869 3.830000e-42 183.0
33 TraesCS4A01G207900 chr3B 89.630 135 12 2 3778 3912 452551022 452550890 2.980000e-38 171.0
34 TraesCS4A01G207900 chr5B 92.742 124 8 1 3773 3896 646478169 646478047 1.780000e-40 178.0
35 TraesCS4A01G207900 chr6A 91.473 129 8 3 3769 3896 277889675 277889801 2.300000e-39 174.0
36 TraesCS4A01G207900 chr6A 89.130 138 11 3 3762 3897 475436269 475436134 1.070000e-37 169.0
37 TraesCS4A01G207900 chr6A 85.714 56 7 1 470 524 115948451 115948506 2.420000e-04 58.4
38 TraesCS4A01G207900 chr3D 91.473 129 8 3 3769 3896 610539971 610540097 2.300000e-39 174.0
39 TraesCS4A01G207900 chr3D 78.986 138 19 7 2317 2447 583037801 583037935 1.110000e-12 86.1
40 TraesCS4A01G207900 chr2B 93.277 119 7 1 3778 3896 518048442 518048325 2.300000e-39 174.0
41 TraesCS4A01G207900 chr2B 80.702 228 39 5 2011 2234 47370371 47370145 8.290000e-39 172.0
42 TraesCS4A01G207900 chr2B 79.141 163 23 8 520 678 492091563 492091408 1.100000e-17 102.0
43 TraesCS4A01G207900 chr1A 76.856 229 27 14 476 696 464812419 464812209 8.520000e-19 106.0
44 TraesCS4A01G207900 chr2D 78.409 176 26 9 520 690 419677178 419677010 3.070000e-18 104.0
45 TraesCS4A01G207900 chrUn 80.303 132 21 5 2321 2447 41692988 41692857 1.840000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G207900 chr4A 501124644 501130860 6216 True 11481.000000 11481 100.000000 1 6217 1 chr4A.!!$R1 6216
1 TraesCS4A01G207900 chr4D 88142600 88150727 8127 True 1307.833333 3698 89.733833 374 6217 6 chr4D.!!$R1 5843
2 TraesCS4A01G207900 chr4B 124917887 124924712 6825 True 1359.566667 2494 89.496500 153 6217 6 chr4B.!!$R1 6064
3 TraesCS4A01G207900 chr5A 512776453 512778669 2216 True 213.000000 217 81.074500 2510 2789 2 chr5A.!!$R2 279

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.032952 TGCAACTAGACGGTGACACC 59.967 55.0 15.13 15.13 34.05 4.16 F
344 348 0.037605 GGTAGAGGGTTGACCACACG 60.038 60.0 2.12 0.00 43.89 4.49 F
1324 2210 0.035458 CTGCTCCTTCGTGTTCCCTT 59.965 55.0 0.00 0.00 0.00 3.95 F
1374 2260 0.172578 CGTCATGGCGTGTCTTCCTA 59.827 55.0 12.53 0.00 0.00 2.94 F
1997 2926 0.250467 ATGTGTCTCTGTGGTGCCAC 60.250 55.0 14.04 14.04 46.33 5.01 F
3807 5513 0.036306 TCCGGAAAAGCTTGTCCCTC 59.964 55.0 26.94 5.77 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1305 2191 0.035458 AAGGGAACACGAAGGAGCAG 59.965 55.000 0.00 0.00 0.0 4.24 R
1723 2616 1.202758 ACCTCAAGCAACGACATTCCA 60.203 47.619 0.00 0.00 0.0 3.53 R
3097 4790 0.467384 CCAGAGGCTCCCATGTGTAG 59.533 60.000 11.71 0.00 0.0 2.74 R
3306 5012 9.295825 TCAATATCTGGTTGTACAAAAATGAGT 57.704 29.630 10.51 0.00 0.0 3.41 R
3852 5558 0.034896 GTCCCAAGCTTGTCCTTCGA 59.965 55.000 24.35 7.45 0.0 3.71 R
5514 8864 0.234884 CTTTGTGTTCGACGGGCTTC 59.765 55.000 0.00 0.00 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.306148 ATGTCGAGATGCTGCAATGG 58.694 50.000 6.36 0.00 0.00 3.16
20 21 0.745486 TGTCGAGATGCTGCAATGGG 60.745 55.000 6.36 0.00 0.00 4.00
21 22 0.745845 GTCGAGATGCTGCAATGGGT 60.746 55.000 6.36 0.00 0.00 4.51
22 23 0.462581 TCGAGATGCTGCAATGGGTC 60.463 55.000 6.36 0.00 0.00 4.46
23 24 0.745486 CGAGATGCTGCAATGGGTCA 60.745 55.000 6.36 0.00 0.00 4.02
24 25 0.737219 GAGATGCTGCAATGGGTCAC 59.263 55.000 6.36 0.00 0.00 3.67
25 26 0.682209 AGATGCTGCAATGGGTCACC 60.682 55.000 6.36 0.00 37.24 4.02
26 27 1.996786 GATGCTGCAATGGGTCACCG 61.997 60.000 6.36 0.00 40.75 4.94
27 28 4.120331 GCTGCAATGGGTCACCGC 62.120 66.667 0.00 0.00 40.75 5.68
28 29 3.803082 CTGCAATGGGTCACCGCG 61.803 66.667 0.00 0.00 40.75 6.46
29 30 4.321966 TGCAATGGGTCACCGCGA 62.322 61.111 8.23 0.00 40.75 5.87
30 31 2.824041 GCAATGGGTCACCGCGAT 60.824 61.111 8.23 0.00 40.75 4.58
31 32 3.101209 CAATGGGTCACCGCGATG 58.899 61.111 8.23 0.00 40.75 3.84
32 33 2.824041 AATGGGTCACCGCGATGC 60.824 61.111 8.23 0.00 40.75 3.91
33 34 3.329542 AATGGGTCACCGCGATGCT 62.330 57.895 8.23 0.00 40.75 3.79
34 35 1.966901 AATGGGTCACCGCGATGCTA 61.967 55.000 8.23 0.00 40.75 3.49
35 36 2.585247 GGGTCACCGCGATGCTAC 60.585 66.667 8.23 0.00 0.00 3.58
36 37 2.954868 GGTCACCGCGATGCTACG 60.955 66.667 8.23 0.00 0.00 3.51
37 38 2.101575 GTCACCGCGATGCTACGA 59.898 61.111 8.23 0.00 35.09 3.43
38 39 1.299165 GTCACCGCGATGCTACGAT 60.299 57.895 8.23 0.00 35.09 3.73
39 40 1.299089 TCACCGCGATGCTACGATG 60.299 57.895 8.23 0.00 35.09 3.84
40 41 2.027605 ACCGCGATGCTACGATGG 59.972 61.111 8.23 9.38 36.76 3.51
41 42 2.734723 CCGCGATGCTACGATGGG 60.735 66.667 8.23 1.87 35.09 4.00
42 43 2.335011 CGCGATGCTACGATGGGA 59.665 61.111 0.00 0.00 35.09 4.37
43 44 1.299850 CGCGATGCTACGATGGGAA 60.300 57.895 0.00 0.00 35.09 3.97
44 45 0.667487 CGCGATGCTACGATGGGAAT 60.667 55.000 0.00 0.00 35.09 3.01
45 46 1.071605 GCGATGCTACGATGGGAATC 58.928 55.000 7.23 0.00 35.09 2.52
46 47 1.605457 GCGATGCTACGATGGGAATCA 60.605 52.381 7.23 0.00 35.09 2.57
47 48 2.061773 CGATGCTACGATGGGAATCAC 58.938 52.381 0.00 0.00 35.09 3.06
48 49 2.288457 CGATGCTACGATGGGAATCACT 60.288 50.000 0.00 0.00 35.09 3.41
49 50 3.057526 CGATGCTACGATGGGAATCACTA 60.058 47.826 0.00 0.00 35.09 2.74
50 51 4.489810 GATGCTACGATGGGAATCACTAG 58.510 47.826 0.00 0.00 0.00 2.57
51 52 2.628178 TGCTACGATGGGAATCACTAGG 59.372 50.000 0.00 0.00 0.00 3.02
52 53 2.891580 GCTACGATGGGAATCACTAGGA 59.108 50.000 0.00 0.00 0.00 2.94
53 54 3.057174 GCTACGATGGGAATCACTAGGAG 60.057 52.174 0.00 0.00 0.00 3.69
54 55 1.689273 ACGATGGGAATCACTAGGAGC 59.311 52.381 0.00 0.00 0.00 4.70
55 56 1.967066 CGATGGGAATCACTAGGAGCT 59.033 52.381 0.00 0.00 0.00 4.09
56 57 2.288702 CGATGGGAATCACTAGGAGCTG 60.289 54.545 0.00 0.00 0.00 4.24
57 58 0.833287 TGGGAATCACTAGGAGCTGC 59.167 55.000 0.00 0.00 0.00 5.25
58 59 0.833287 GGGAATCACTAGGAGCTGCA 59.167 55.000 8.35 0.00 0.00 4.41
59 60 1.210478 GGGAATCACTAGGAGCTGCAA 59.790 52.381 8.35 0.00 0.00 4.08
60 61 2.284190 GGAATCACTAGGAGCTGCAAC 58.716 52.381 8.35 0.00 0.00 4.17
61 62 2.093235 GGAATCACTAGGAGCTGCAACT 60.093 50.000 8.35 1.53 0.00 3.16
62 63 3.133003 GGAATCACTAGGAGCTGCAACTA 59.867 47.826 8.35 2.76 0.00 2.24
63 64 4.367450 GAATCACTAGGAGCTGCAACTAG 58.633 47.826 21.44 21.44 39.96 2.57
64 65 3.087370 TCACTAGGAGCTGCAACTAGA 57.913 47.619 26.64 11.06 38.03 2.43
65 66 2.755655 TCACTAGGAGCTGCAACTAGAC 59.244 50.000 26.64 0.99 38.03 2.59
66 67 1.746220 ACTAGGAGCTGCAACTAGACG 59.254 52.381 26.64 10.47 38.03 4.18
67 68 1.066303 CTAGGAGCTGCAACTAGACGG 59.934 57.143 19.56 0.00 37.06 4.79
68 69 0.900647 AGGAGCTGCAACTAGACGGT 60.901 55.000 8.35 0.00 0.00 4.83
69 70 0.737715 GGAGCTGCAACTAGACGGTG 60.738 60.000 0.00 0.00 0.00 4.94
70 71 0.243907 GAGCTGCAACTAGACGGTGA 59.756 55.000 1.02 0.00 0.00 4.02
71 72 0.038159 AGCTGCAACTAGACGGTGAC 60.038 55.000 1.02 0.00 0.00 3.67
72 73 0.319555 GCTGCAACTAGACGGTGACA 60.320 55.000 0.00 0.00 0.00 3.58
73 74 1.419374 CTGCAACTAGACGGTGACAC 58.581 55.000 0.00 0.00 0.00 3.67
74 75 0.032952 TGCAACTAGACGGTGACACC 59.967 55.000 15.13 15.13 34.05 4.16
75 76 0.669625 GCAACTAGACGGTGACACCC 60.670 60.000 19.11 5.91 33.75 4.61
84 85 3.315765 GGTGACACCCGATTGTTGA 57.684 52.632 14.16 0.00 30.04 3.18
85 86 1.600023 GGTGACACCCGATTGTTGAA 58.400 50.000 14.16 0.00 30.04 2.69
86 87 1.265905 GGTGACACCCGATTGTTGAAC 59.734 52.381 14.16 0.00 30.04 3.18
87 88 1.265905 GTGACACCCGATTGTTGAACC 59.734 52.381 0.00 0.00 0.00 3.62
88 89 1.134068 TGACACCCGATTGTTGAACCA 60.134 47.619 0.00 0.00 0.00 3.67
89 90 1.535462 GACACCCGATTGTTGAACCAG 59.465 52.381 0.00 0.00 0.00 4.00
90 91 1.142060 ACACCCGATTGTTGAACCAGA 59.858 47.619 0.00 0.00 0.00 3.86
91 92 1.806542 CACCCGATTGTTGAACCAGAG 59.193 52.381 0.00 0.00 0.00 3.35
92 93 1.697432 ACCCGATTGTTGAACCAGAGA 59.303 47.619 0.00 0.00 0.00 3.10
93 94 2.289694 ACCCGATTGTTGAACCAGAGAG 60.290 50.000 0.00 0.00 0.00 3.20
94 95 1.734465 CCGATTGTTGAACCAGAGAGC 59.266 52.381 0.00 0.00 0.00 4.09
95 96 2.416747 CGATTGTTGAACCAGAGAGCA 58.583 47.619 0.00 0.00 0.00 4.26
96 97 3.005554 CGATTGTTGAACCAGAGAGCAT 58.994 45.455 0.00 0.00 0.00 3.79
97 98 3.063180 CGATTGTTGAACCAGAGAGCATC 59.937 47.826 0.00 0.00 0.00 3.91
98 99 2.084610 TGTTGAACCAGAGAGCATCG 57.915 50.000 0.00 0.00 42.67 3.84
99 100 1.344438 TGTTGAACCAGAGAGCATCGT 59.656 47.619 0.00 0.00 42.67 3.73
100 101 2.224281 TGTTGAACCAGAGAGCATCGTT 60.224 45.455 0.00 0.00 42.67 3.85
101 102 2.084610 TGAACCAGAGAGCATCGTTG 57.915 50.000 0.00 0.00 42.67 4.10
102 103 1.344438 TGAACCAGAGAGCATCGTTGT 59.656 47.619 0.00 0.00 42.67 3.32
103 104 2.224281 TGAACCAGAGAGCATCGTTGTT 60.224 45.455 0.00 0.00 42.67 2.83
104 105 1.800805 ACCAGAGAGCATCGTTGTTG 58.199 50.000 0.00 0.00 42.67 3.33
105 106 1.070758 ACCAGAGAGCATCGTTGTTGT 59.929 47.619 0.00 0.00 42.67 3.32
106 107 2.299013 ACCAGAGAGCATCGTTGTTGTA 59.701 45.455 0.00 0.00 42.67 2.41
107 108 3.244078 ACCAGAGAGCATCGTTGTTGTAA 60.244 43.478 0.00 0.00 42.67 2.41
108 109 3.123621 CCAGAGAGCATCGTTGTTGTAAC 59.876 47.826 0.00 0.00 42.67 2.50
109 110 3.123621 CAGAGAGCATCGTTGTTGTAACC 59.876 47.826 0.00 0.00 42.67 2.85
110 111 3.064207 GAGAGCATCGTTGTTGTAACCA 58.936 45.455 0.00 0.00 42.67 3.67
111 112 3.067106 AGAGCATCGTTGTTGTAACCAG 58.933 45.455 0.00 0.00 42.67 4.00
112 113 1.535462 AGCATCGTTGTTGTAACCAGC 59.465 47.619 0.00 0.00 0.00 4.85
113 114 1.724654 GCATCGTTGTTGTAACCAGCG 60.725 52.381 0.00 0.00 0.00 5.18
114 115 1.795872 CATCGTTGTTGTAACCAGCGA 59.204 47.619 2.06 2.06 32.90 4.93
115 116 2.157834 TCGTTGTTGTAACCAGCGAT 57.842 45.000 0.00 0.00 0.00 4.58
116 117 1.795872 TCGTTGTTGTAACCAGCGATG 59.204 47.619 0.00 0.00 0.00 3.84
117 118 1.136085 CGTTGTTGTAACCAGCGATGG 60.136 52.381 20.26 20.26 0.00 3.51
118 119 1.877443 GTTGTTGTAACCAGCGATGGT 59.123 47.619 22.02 22.02 45.55 3.55
119 120 1.518325 TGTTGTAACCAGCGATGGTG 58.482 50.000 28.59 0.00 42.20 4.17
120 121 1.070914 TGTTGTAACCAGCGATGGTGA 59.929 47.619 28.59 17.85 42.20 4.02
121 122 2.147958 GTTGTAACCAGCGATGGTGAA 58.852 47.619 28.59 16.56 42.20 3.18
122 123 1.803334 TGTAACCAGCGATGGTGAAC 58.197 50.000 28.59 25.97 42.20 3.18
123 124 1.070914 TGTAACCAGCGATGGTGAACA 59.929 47.619 28.59 28.17 42.20 3.18
124 125 2.290008 TGTAACCAGCGATGGTGAACAT 60.290 45.455 28.59 13.07 42.20 2.71
125 126 1.167851 AACCAGCGATGGTGAACATG 58.832 50.000 28.59 0.00 42.20 3.21
126 127 0.677731 ACCAGCGATGGTGAACATGG 60.678 55.000 27.26 0.00 40.72 3.66
127 128 1.378882 CCAGCGATGGTGAACATGGG 61.379 60.000 12.68 0.00 40.72 4.00
128 129 0.677731 CAGCGATGGTGAACATGGGT 60.678 55.000 0.00 0.00 45.15 4.51
129 130 0.677731 AGCGATGGTGAACATGGGTG 60.678 55.000 0.00 0.00 43.10 4.61
130 131 0.960364 GCGATGGTGAACATGGGTGT 60.960 55.000 0.00 0.00 40.72 4.16
139 140 1.750193 AACATGGGTGTTGCGATAGG 58.250 50.000 0.00 0.00 46.43 2.57
140 141 0.107214 ACATGGGTGTTGCGATAGGG 60.107 55.000 0.00 0.00 34.01 3.53
141 142 0.819259 CATGGGTGTTGCGATAGGGG 60.819 60.000 0.00 0.00 0.00 4.79
142 143 1.994885 ATGGGTGTTGCGATAGGGGG 61.995 60.000 0.00 0.00 0.00 5.40
143 144 2.372074 GGGTGTTGCGATAGGGGGA 61.372 63.158 0.00 0.00 0.00 4.81
144 145 1.705997 GGGTGTTGCGATAGGGGGAT 61.706 60.000 0.00 0.00 0.00 3.85
145 146 0.535102 GGTGTTGCGATAGGGGGATG 60.535 60.000 0.00 0.00 0.00 3.51
146 147 0.535102 GTGTTGCGATAGGGGGATGG 60.535 60.000 0.00 0.00 0.00 3.51
147 148 1.073199 GTTGCGATAGGGGGATGGG 59.927 63.158 0.00 0.00 0.00 4.00
148 149 2.153401 TTGCGATAGGGGGATGGGG 61.153 63.158 0.00 0.00 0.00 4.96
149 150 3.330720 GCGATAGGGGGATGGGGG 61.331 72.222 0.00 0.00 0.00 5.40
166 167 1.295423 GGGCGAGCTAGAACCACAA 59.705 57.895 0.00 0.00 0.00 3.33
172 173 2.223377 CGAGCTAGAACCACAAACAACC 59.777 50.000 0.00 0.00 0.00 3.77
180 181 1.956477 ACCACAAACAACCAGAGATGC 59.044 47.619 0.00 0.00 0.00 3.91
181 182 1.069022 CCACAAACAACCAGAGATGCG 60.069 52.381 0.00 0.00 0.00 4.73
182 183 1.603802 CACAAACAACCAGAGATGCGT 59.396 47.619 0.00 0.00 0.00 5.24
183 184 2.033299 CACAAACAACCAGAGATGCGTT 59.967 45.455 0.00 0.00 0.00 4.84
184 185 2.033299 ACAAACAACCAGAGATGCGTTG 59.967 45.455 0.00 0.00 42.05 4.10
185 186 1.238439 AACAACCAGAGATGCGTTGG 58.762 50.000 0.00 0.00 40.92 3.77
191 195 1.078848 AGAGATGCGTTGGTGCTCC 60.079 57.895 0.00 0.00 35.36 4.70
214 218 2.240612 GACAACGATGGCCGAGCAAC 62.241 60.000 0.00 0.00 41.76 4.17
217 221 1.369091 AACGATGGCCGAGCAACATC 61.369 55.000 0.00 0.00 41.76 3.06
218 222 1.815003 CGATGGCCGAGCAACATCA 60.815 57.895 0.00 0.00 40.68 3.07
229 233 0.100503 GCAACATCAATACCACCCGC 59.899 55.000 0.00 0.00 0.00 6.13
262 266 1.949525 ACAAAGTTGCAATCGAGCTGT 59.050 42.857 0.59 0.00 34.99 4.40
287 291 2.803670 CACGACGTGGTGCTACCG 60.804 66.667 20.26 2.44 42.58 4.02
293 297 2.025418 CGTGGTGCTACCGACCAAC 61.025 63.158 0.00 0.00 45.17 3.77
300 304 3.007070 CTACCGACCAACGCGCAAC 62.007 63.158 5.73 0.00 41.07 4.17
307 311 3.722295 CAACGCGCAACCGTCCAT 61.722 61.111 5.73 0.00 41.16 3.41
308 312 3.419759 AACGCGCAACCGTCCATC 61.420 61.111 5.73 0.00 41.16 3.51
323 327 0.742281 CCATCCTCCAACTCGCACAG 60.742 60.000 0.00 0.00 0.00 3.66
326 330 2.046892 CTCCAACTCGCACAGGGG 60.047 66.667 0.00 0.00 0.00 4.79
327 331 2.847234 TCCAACTCGCACAGGGGT 60.847 61.111 0.00 0.00 0.00 4.95
341 345 0.546988 AGGGGTAGAGGGTTGACCAC 60.547 60.000 2.12 0.00 43.89 4.16
342 346 0.838987 GGGGTAGAGGGTTGACCACA 60.839 60.000 2.12 0.00 43.89 4.17
344 348 0.037605 GGTAGAGGGTTGACCACACG 60.038 60.000 2.12 0.00 43.89 4.49
345 349 0.669625 GTAGAGGGTTGACCACACGC 60.670 60.000 2.12 0.00 43.89 5.34
347 351 3.802418 GAGGGTTGACCACACGCGT 62.802 63.158 5.58 5.58 43.89 6.01
350 354 2.308039 GGTTGACCACACGCGTCTC 61.308 63.158 9.86 1.94 35.64 3.36
359 364 1.154836 CACGCGTCTCTCGTTTTGC 60.155 57.895 9.86 0.00 42.13 3.68
367 372 1.416401 TCTCTCGTTTTGCAAGAGGGT 59.584 47.619 12.38 0.00 37.67 4.34
368 373 1.801178 CTCTCGTTTTGCAAGAGGGTC 59.199 52.381 12.69 0.00 34.24 4.46
369 374 0.512952 CTCGTTTTGCAAGAGGGTCG 59.487 55.000 9.48 1.16 0.00 4.79
370 375 1.082104 CGTTTTGCAAGAGGGTCGC 60.082 57.895 0.00 0.00 0.00 5.19
371 376 1.082104 GTTTTGCAAGAGGGTCGCG 60.082 57.895 0.00 0.00 0.00 5.87
384 404 1.214589 GTCGCGGCTAAGAGGAACA 59.785 57.895 1.90 0.00 0.00 3.18
410 430 1.603455 CGGTTTGGATGTGGCTGGT 60.603 57.895 0.00 0.00 0.00 4.00
412 432 1.250840 GGTTTGGATGTGGCTGGTCC 61.251 60.000 0.00 0.00 0.00 4.46
484 504 8.408601 ACTTCATCCATTTTCATAATGTAGTGC 58.591 33.333 0.00 0.00 30.09 4.40
485 505 6.958255 TCATCCATTTTCATAATGTAGTGCG 58.042 36.000 0.00 0.00 0.00 5.34
486 506 6.542005 TCATCCATTTTCATAATGTAGTGCGT 59.458 34.615 0.00 0.00 0.00 5.24
487 507 7.713073 TCATCCATTTTCATAATGTAGTGCGTA 59.287 33.333 0.00 0.00 0.00 4.42
488 508 7.241663 TCCATTTTCATAATGTAGTGCGTAC 57.758 36.000 0.00 0.00 0.00 3.67
489 509 6.819146 TCCATTTTCATAATGTAGTGCGTACA 59.181 34.615 6.38 1.52 45.93 2.90
491 511 7.011016 CCATTTTCATAATGTAGTGCGTACAGA 59.989 37.037 6.38 0.00 45.06 3.41
522 544 7.825627 GCAAAGTCAAATATTGCAAACTTTG 57.174 32.000 30.25 30.25 45.75 2.77
589 619 8.918961 ATATATAGAATACGAAGCTGCAACTC 57.081 34.615 1.02 0.00 0.00 3.01
592 622 4.256920 AGAATACGAAGCTGCAACTCATT 58.743 39.130 1.02 0.00 0.00 2.57
675 705 7.992180 ACTTGATCAATTTGTGAAGTTTGAC 57.008 32.000 8.96 0.00 40.50 3.18
678 708 9.734620 CTTGATCAATTTGTGAAGTTTGACTTA 57.265 29.630 8.96 0.00 38.80 2.24
725 1588 3.383825 GGGAGTATCGTTATCACAGGTGT 59.616 47.826 0.00 0.00 34.37 4.16
881 1744 3.976902 ATCGCCCGAACGAACGTCC 62.977 63.158 3.89 0.00 46.59 4.79
933 1796 1.021968 GTAATGCGTCCATGAACCCC 58.978 55.000 0.00 0.00 0.00 4.95
934 1797 0.621082 TAATGCGTCCATGAACCCCA 59.379 50.000 0.00 0.00 0.00 4.96
956 1819 4.105553 GCCACGGTAGGTTCCCCC 62.106 72.222 0.00 0.00 0.00 5.40
958 1821 2.364780 CCACGGTAGGTTCCCCCTC 61.365 68.421 0.00 0.00 44.81 4.30
959 1822 2.040114 ACGGTAGGTTCCCCCTCC 59.960 66.667 0.00 0.00 44.81 4.30
960 1823 2.039951 CGGTAGGTTCCCCCTCCA 59.960 66.667 0.00 0.00 44.81 3.86
1089 1975 2.019708 TTCATTCGATTCGTGCGGCG 62.020 55.000 0.51 0.51 43.01 6.46
1090 1976 3.261951 ATTCGATTCGTGCGGCGG 61.262 61.111 9.78 0.00 41.72 6.13
1247 2133 2.435586 CACTCCGGCAGCTTCCTG 60.436 66.667 0.00 0.00 42.13 3.86
1305 2191 4.699522 GGGTATCGCGGGGCCATC 62.700 72.222 6.13 0.00 0.00 3.51
1318 2204 1.078848 GCCATCTGCTCCTTCGTGT 60.079 57.895 0.00 0.00 36.87 4.49
1324 2210 0.035458 CTGCTCCTTCGTGTTCCCTT 59.965 55.000 0.00 0.00 0.00 3.95
1351 2237 1.194772 CTTTCGAAGAAACTCGCACCC 59.805 52.381 0.00 0.00 45.90 4.61
1374 2260 0.172578 CGTCATGGCGTGTCTTCCTA 59.827 55.000 12.53 0.00 0.00 2.94
1419 2305 2.605366 GGTTTAGCTTCTCATCTCGTGC 59.395 50.000 0.00 0.00 0.00 5.34
1421 2307 2.568696 TAGCTTCTCATCTCGTGCAC 57.431 50.000 6.82 6.82 0.00 4.57
1545 2435 2.234661 TGCGTCTCATCTCCTTTCATGT 59.765 45.455 0.00 0.00 0.00 3.21
1546 2436 2.863137 GCGTCTCATCTCCTTTCATGTC 59.137 50.000 0.00 0.00 0.00 3.06
1547 2437 3.430098 GCGTCTCATCTCCTTTCATGTCT 60.430 47.826 0.00 0.00 0.00 3.41
1548 2438 4.202060 GCGTCTCATCTCCTTTCATGTCTA 60.202 45.833 0.00 0.00 0.00 2.59
1561 2453 8.483758 TCCTTTCATGTCTACTACCTTATTTCC 58.516 37.037 0.00 0.00 0.00 3.13
1565 2457 5.002464 TGTCTACTACCTTATTTCCGTGC 57.998 43.478 0.00 0.00 0.00 5.34
1574 2466 6.190954 ACCTTATTTCCGTGCACTTTATTC 57.809 37.500 16.19 0.00 0.00 1.75
1608 2500 5.509498 TCTTGCCATGCTAAAACCTATCTT 58.491 37.500 0.00 0.00 0.00 2.40
1669 2562 0.931005 GGAATGAGACACCGATTCGC 59.069 55.000 0.00 0.00 0.00 4.70
1723 2616 5.772004 AGGATGAGGAACTATATCGGCTAT 58.228 41.667 0.00 0.00 41.55 2.97
1726 2619 4.930696 TGAGGAACTATATCGGCTATGGA 58.069 43.478 0.00 0.00 41.55 3.41
1746 2639 1.512926 ATGTCGTTGCTTGAGGTGAC 58.487 50.000 0.00 0.00 0.00 3.67
1773 2666 4.379813 CCTTGCTATGCTTTGTCATTTCGT 60.380 41.667 0.00 0.00 0.00 3.85
1867 2788 5.631119 TCGATAGTGGAGATATGTTCAGGA 58.369 41.667 0.00 0.00 37.40 3.86
1869 2790 6.721668 TCGATAGTGGAGATATGTTCAGGAAT 59.278 38.462 0.00 0.00 37.40 3.01
1892 2813 0.950116 GCTCAACATCCTATGCCTGC 59.050 55.000 0.00 0.00 0.00 4.85
1989 2918 9.869667 ATAATTCTACTAGGTATGTGTCTCTGT 57.130 33.333 0.00 0.00 0.00 3.41
1997 2926 0.250467 ATGTGTCTCTGTGGTGCCAC 60.250 55.000 14.04 14.04 46.33 5.01
2016 2967 1.263356 CGGGGGAACACAGTAAGAGA 58.737 55.000 0.00 0.00 0.00 3.10
2021 2972 4.254492 GGGGAACACAGTAAGAGAATCAC 58.746 47.826 0.00 0.00 37.82 3.06
2061 3012 8.924691 TGATGCAAAGCAAATAGACAAAATAAC 58.075 29.630 0.00 0.00 43.62 1.89
2245 3196 5.762218 GGATTACCAAAGATGACTGATCAGG 59.238 44.000 26.08 8.85 35.60 3.86
2256 3207 3.907474 TGACTGATCAGGACCAGGTTTTA 59.093 43.478 26.08 0.00 34.85 1.52
2257 3208 4.254492 GACTGATCAGGACCAGGTTTTAC 58.746 47.826 26.08 0.00 34.85 2.01
2259 3210 2.983192 TGATCAGGACCAGGTTTTACCA 59.017 45.455 0.00 0.00 41.95 3.25
2261 3212 2.696775 TCAGGACCAGGTTTTACCAGA 58.303 47.619 0.00 0.00 41.95 3.86
2303 3975 6.183360 TGGACCGTGGATTTATTGCTAATTTC 60.183 38.462 0.00 0.00 0.00 2.17
2304 3976 6.183360 GGACCGTGGATTTATTGCTAATTTCA 60.183 38.462 0.00 0.00 0.00 2.69
2413 4097 3.399330 GACGAAGGATGGACAAAACTGA 58.601 45.455 0.00 0.00 0.00 3.41
2418 4102 4.013267 AGGATGGACAAAACTGAGTGAG 57.987 45.455 0.00 0.00 0.00 3.51
2474 4162 9.740710 AAAATAAATAAAGTAGAGACACCTGCT 57.259 29.630 0.00 0.00 0.00 4.24
2502 4190 9.772973 GACTTTGGGTTTTCTTGGTTAATATTT 57.227 29.630 0.00 0.00 0.00 1.40
2529 4217 4.101741 AGTGCTTCTTTGTCCACTACTTCT 59.898 41.667 0.00 0.00 36.82 2.85
2568 4256 3.181491 CGGAACTTTGTGAAGCCTTTCAA 60.181 43.478 0.00 0.00 44.49 2.69
2618 4307 4.876125 TCGATCTTGATGCCTGAAGTATC 58.124 43.478 0.00 0.00 38.04 2.24
2623 4312 3.189618 TGATGCCTGAAGTATCTGCAG 57.810 47.619 7.63 7.63 38.34 4.41
2636 4325 6.678568 AGTATCTGCAGGTTATCAGCTTAT 57.321 37.500 15.13 0.00 0.00 1.73
2637 4326 7.782897 AGTATCTGCAGGTTATCAGCTTATA 57.217 36.000 15.13 0.00 0.00 0.98
2724 4414 8.717821 GCATATACCGCTTCAGTCATTATTTTA 58.282 33.333 0.00 0.00 0.00 1.52
2791 4484 7.881775 ATCCCTAAATGGTGTTAATCTTGAC 57.118 36.000 0.00 0.00 0.00 3.18
2824 4517 6.549364 TGGTTGAATTCATAACTGAACCACTT 59.451 34.615 17.86 0.00 43.92 3.16
3097 4790 4.883585 TCTATTGAATCTGTTGGCATCACC 59.116 41.667 0.00 0.00 39.84 4.02
3306 5012 0.555769 AGGCAAACCCTGTCCTTTCA 59.444 50.000 0.00 0.00 44.28 2.69
3400 5106 4.799564 TGTTCAATATTGGAAACTGGCC 57.200 40.909 15.36 0.00 0.00 5.36
3658 5364 0.107643 GCAGGGGCAGAGGTATCTTC 59.892 60.000 0.00 0.00 40.72 2.87
3717 5423 4.285517 CAGTAACTCATATGGCCCTCAGAT 59.714 45.833 0.00 0.00 0.00 2.90
3778 5484 8.685427 TGCCAAGTTACAGTATCTTATTACGTA 58.315 33.333 3.94 0.00 0.00 3.57
3779 5485 8.962111 GCCAAGTTACAGTATCTTATTACGTAC 58.038 37.037 0.00 0.00 0.00 3.67
3783 5489 9.061435 AGTTACAGTATCTTATTACGTACTCCC 57.939 37.037 0.00 0.00 0.00 4.30
3784 5490 9.061435 GTTACAGTATCTTATTACGTACTCCCT 57.939 37.037 0.00 0.00 0.00 4.20
3785 5491 7.742556 ACAGTATCTTATTACGTACTCCCTC 57.257 40.000 0.00 0.00 0.00 4.30
3786 5492 6.714356 ACAGTATCTTATTACGTACTCCCTCC 59.286 42.308 0.00 0.00 0.00 4.30
3787 5493 5.936956 AGTATCTTATTACGTACTCCCTCCG 59.063 44.000 0.00 0.00 0.00 4.63
3788 5494 4.156455 TCTTATTACGTACTCCCTCCGT 57.844 45.455 0.00 0.00 38.53 4.69
3789 5495 4.130118 TCTTATTACGTACTCCCTCCGTC 58.870 47.826 0.00 0.00 36.12 4.79
3790 5496 1.685148 ATTACGTACTCCCTCCGTCC 58.315 55.000 0.00 0.00 36.12 4.79
3791 5497 0.744414 TTACGTACTCCCTCCGTCCG 60.744 60.000 0.00 0.00 36.12 4.79
3792 5498 2.593468 TACGTACTCCCTCCGTCCGG 62.593 65.000 0.00 0.00 36.12 5.14
3793 5499 2.273449 GTACTCCCTCCGTCCGGA 59.727 66.667 0.00 0.00 42.90 5.14
3794 5500 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
3795 5501 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
3796 5502 0.251742 TACTCCCTCCGTCCGGAAAA 60.252 55.000 5.23 0.00 44.66 2.29
3797 5503 1.218316 CTCCCTCCGTCCGGAAAAG 59.782 63.158 5.23 3.59 44.66 2.27
3798 5504 2.436115 CCCTCCGTCCGGAAAAGC 60.436 66.667 5.23 0.00 44.66 3.51
3799 5505 2.663196 CCTCCGTCCGGAAAAGCT 59.337 61.111 5.23 0.00 44.66 3.74
3800 5506 1.003718 CCTCCGTCCGGAAAAGCTT 60.004 57.895 5.23 0.00 44.66 3.74
3801 5507 1.298859 CCTCCGTCCGGAAAAGCTTG 61.299 60.000 5.23 0.00 44.66 4.01
3802 5508 0.602905 CTCCGTCCGGAAAAGCTTGT 60.603 55.000 5.23 0.00 44.66 3.16
3803 5509 0.601841 TCCGTCCGGAAAAGCTTGTC 60.602 55.000 5.23 8.23 42.05 3.18
3804 5510 1.574702 CCGTCCGGAAAAGCTTGTCC 61.575 60.000 24.00 24.00 37.50 4.02
3805 5511 1.574702 CGTCCGGAAAAGCTTGTCCC 61.575 60.000 26.94 13.97 0.00 4.46
3806 5512 0.250770 GTCCGGAAAAGCTTGTCCCT 60.251 55.000 26.94 0.00 0.00 4.20
3807 5513 0.036306 TCCGGAAAAGCTTGTCCCTC 59.964 55.000 26.94 5.77 0.00 4.30
3808 5514 0.250727 CCGGAAAAGCTTGTCCCTCA 60.251 55.000 26.94 0.00 0.00 3.86
3809 5515 1.604604 CGGAAAAGCTTGTCCCTCAA 58.395 50.000 26.94 0.00 34.61 3.02
3810 5516 1.953686 CGGAAAAGCTTGTCCCTCAAA 59.046 47.619 26.94 0.00 35.48 2.69
3811 5517 2.558359 CGGAAAAGCTTGTCCCTCAAAT 59.442 45.455 26.94 0.00 35.48 2.32
3812 5518 3.612479 CGGAAAAGCTTGTCCCTCAAATG 60.612 47.826 26.94 9.69 35.48 2.32
3813 5519 3.306294 GGAAAAGCTTGTCCCTCAAATGG 60.306 47.826 23.49 0.00 35.48 3.16
3814 5520 2.978156 AAGCTTGTCCCTCAAATGGA 57.022 45.000 0.00 0.00 35.48 3.41
3815 5521 3.463048 AAGCTTGTCCCTCAAATGGAT 57.537 42.857 0.00 0.00 35.48 3.41
3816 5522 2.731572 AGCTTGTCCCTCAAATGGATG 58.268 47.619 0.00 0.00 35.48 3.51
3817 5523 2.042162 AGCTTGTCCCTCAAATGGATGT 59.958 45.455 0.00 0.00 35.48 3.06
3818 5524 3.266772 AGCTTGTCCCTCAAATGGATGTA 59.733 43.478 0.00 0.00 35.48 2.29
3819 5525 4.079558 AGCTTGTCCCTCAAATGGATGTAT 60.080 41.667 0.00 0.00 35.48 2.29
3820 5526 4.276926 GCTTGTCCCTCAAATGGATGTATC 59.723 45.833 0.00 0.00 35.48 2.24
3821 5527 5.688807 CTTGTCCCTCAAATGGATGTATCT 58.311 41.667 0.00 0.00 35.48 1.98
3822 5528 6.688922 GCTTGTCCCTCAAATGGATGTATCTA 60.689 42.308 0.00 0.00 35.48 1.98
3823 5529 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
3824 5530 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
3825 5531 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
3826 5532 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
3827 5533 5.455183 CCCTCAAATGGATGTATCTAGCACA 60.455 44.000 0.22 0.22 0.00 4.57
3828 5534 6.057533 CCTCAAATGGATGTATCTAGCACAA 58.942 40.000 1.72 0.00 0.00 3.33
3829 5535 6.543465 CCTCAAATGGATGTATCTAGCACAAA 59.457 38.462 1.72 0.00 0.00 2.83
3830 5536 7.067372 CCTCAAATGGATGTATCTAGCACAAAA 59.933 37.037 1.72 0.00 0.00 2.44
3831 5537 8.523915 TCAAATGGATGTATCTAGCACAAAAT 57.476 30.769 1.72 0.00 0.00 1.82
3832 5538 8.970020 TCAAATGGATGTATCTAGCACAAAATT 58.030 29.630 1.72 1.07 0.00 1.82
3833 5539 9.590451 CAAATGGATGTATCTAGCACAAAATTT 57.410 29.630 1.72 5.69 0.00 1.82
3834 5540 9.590451 AAATGGATGTATCTAGCACAAAATTTG 57.410 29.630 3.89 3.89 0.00 2.32
3835 5541 7.099266 TGGATGTATCTAGCACAAAATTTGG 57.901 36.000 10.71 0.00 34.12 3.28
3836 5542 6.663093 TGGATGTATCTAGCACAAAATTTGGT 59.337 34.615 10.71 0.00 34.12 3.67
3837 5543 6.974622 GGATGTATCTAGCACAAAATTTGGTG 59.025 38.462 19.66 19.66 38.05 4.17
3848 5554 7.975866 CACAAAATTTGGTGCTAGATACATC 57.024 36.000 12.70 0.00 34.12 3.06
3849 5555 6.974622 CACAAAATTTGGTGCTAGATACATCC 59.025 38.462 12.70 0.00 34.12 3.51
3850 5556 6.663093 ACAAAATTTGGTGCTAGATACATCCA 59.337 34.615 10.71 0.00 34.12 3.41
3851 5557 7.342799 ACAAAATTTGGTGCTAGATACATCCAT 59.657 33.333 10.71 0.00 34.12 3.41
3852 5558 7.902920 AAATTTGGTGCTAGATACATCCATT 57.097 32.000 0.00 0.00 0.00 3.16
3853 5559 7.516198 AATTTGGTGCTAGATACATCCATTC 57.484 36.000 0.00 0.00 0.00 2.67
3854 5560 4.257267 TGGTGCTAGATACATCCATTCG 57.743 45.455 0.00 0.00 0.00 3.34
3855 5561 3.895041 TGGTGCTAGATACATCCATTCGA 59.105 43.478 0.00 0.00 0.00 3.71
3856 5562 4.343814 TGGTGCTAGATACATCCATTCGAA 59.656 41.667 0.00 0.00 0.00 3.71
3857 5563 4.926238 GGTGCTAGATACATCCATTCGAAG 59.074 45.833 3.35 0.00 0.00 3.79
3858 5564 4.926238 GTGCTAGATACATCCATTCGAAGG 59.074 45.833 3.35 2.70 0.00 3.46
3859 5565 4.832823 TGCTAGATACATCCATTCGAAGGA 59.167 41.667 12.12 14.26 39.97 3.36
3860 5566 5.164954 GCTAGATACATCCATTCGAAGGAC 58.835 45.833 12.12 2.86 38.13 3.85
3861 5567 5.279006 GCTAGATACATCCATTCGAAGGACA 60.279 44.000 12.12 0.00 38.13 4.02
3862 5568 5.614324 AGATACATCCATTCGAAGGACAA 57.386 39.130 12.12 4.56 38.13 3.18
3863 5569 5.605534 AGATACATCCATTCGAAGGACAAG 58.394 41.667 12.12 10.15 38.13 3.16
3864 5570 2.359900 ACATCCATTCGAAGGACAAGC 58.640 47.619 12.12 0.00 38.13 4.01
3865 5571 2.026822 ACATCCATTCGAAGGACAAGCT 60.027 45.455 12.12 0.00 38.13 3.74
3866 5572 2.859165 TCCATTCGAAGGACAAGCTT 57.141 45.000 12.12 0.00 0.00 3.74
3867 5573 2.426522 TCCATTCGAAGGACAAGCTTG 58.573 47.619 24.84 24.84 0.00 4.01
3868 5574 1.470098 CCATTCGAAGGACAAGCTTGG 59.530 52.381 29.18 11.25 0.00 3.61
3869 5575 1.470098 CATTCGAAGGACAAGCTTGGG 59.530 52.381 29.18 6.83 0.00 4.12
3870 5576 0.762418 TTCGAAGGACAAGCTTGGGA 59.238 50.000 29.18 13.44 0.00 4.37
3871 5577 0.034896 TCGAAGGACAAGCTTGGGAC 59.965 55.000 29.18 18.22 0.00 4.46
3872 5578 0.250295 CGAAGGACAAGCTTGGGACA 60.250 55.000 29.18 0.00 0.00 4.02
3885 5591 1.886886 TGGGACAAGCTTTTACGGAC 58.113 50.000 0.00 0.00 31.92 4.79
3886 5592 0.794473 GGGACAAGCTTTTACGGACG 59.206 55.000 0.00 0.00 0.00 4.79
3887 5593 0.794473 GGACAAGCTTTTACGGACGG 59.206 55.000 0.00 0.00 0.00 4.79
3888 5594 1.606224 GGACAAGCTTTTACGGACGGA 60.606 52.381 0.00 0.00 0.00 4.69
3889 5595 1.725164 GACAAGCTTTTACGGACGGAG 59.275 52.381 0.00 0.00 0.00 4.63
3890 5596 1.076332 CAAGCTTTTACGGACGGAGG 58.924 55.000 0.00 0.00 0.00 4.30
3891 5597 0.036671 AAGCTTTTACGGACGGAGGG 60.037 55.000 0.00 0.00 0.00 4.30
3892 5598 0.901580 AGCTTTTACGGACGGAGGGA 60.902 55.000 0.00 0.00 0.00 4.20
3893 5599 0.459759 GCTTTTACGGACGGAGGGAG 60.460 60.000 0.00 0.00 0.00 4.30
3894 5600 0.893447 CTTTTACGGACGGAGGGAGT 59.107 55.000 0.00 0.00 0.00 3.85
3895 5601 2.094675 CTTTTACGGACGGAGGGAGTA 58.905 52.381 0.00 0.00 0.00 2.59
3907 5697 6.435277 GGACGGAGGGAGTAATACATAATACA 59.565 42.308 0.00 0.00 0.00 2.29
3945 5954 7.839907 ACACATGCATAGTGGATTTTAAATGT 58.160 30.769 23.86 3.99 41.21 2.71
3979 5989 4.742438 TTTATGACACGCTCAACCTTTC 57.258 40.909 0.00 0.00 30.60 2.62
3989 5999 6.092259 ACACGCTCAACCTTTCATACTATTTC 59.908 38.462 0.00 0.00 0.00 2.17
4010 6020 8.962884 ATTTCTTGCCTTTTTGTTTCTACATT 57.037 26.923 0.00 0.00 33.44 2.71
4045 6055 1.851304 TGAGGGTGAATTCATTGGGC 58.149 50.000 12.12 0.00 0.00 5.36
4047 6057 1.478105 GAGGGTGAATTCATTGGGCAC 59.522 52.381 12.12 0.00 0.00 5.01
4075 7371 8.018677 TCTAGTTTTCTTGCATTCTAAGTTCG 57.981 34.615 0.00 0.00 0.00 3.95
4088 7384 2.977405 AAGTTCGCAGTGCTTCAATC 57.023 45.000 14.33 0.00 0.00 2.67
4438 7735 2.614057 GGTGGATACTTTGATGGCGAAG 59.386 50.000 0.00 0.00 40.68 3.79
4592 7889 3.891422 AGAAGAATGGAGCAGAGTGAG 57.109 47.619 0.00 0.00 0.00 3.51
4665 7962 3.797184 GCTCGGTCTCACATACCATCTTC 60.797 52.174 0.00 0.00 36.78 2.87
4705 8002 3.393941 CCTTTCCTCTCATGGCTCCTATT 59.606 47.826 0.00 0.00 0.00 1.73
4783 8083 3.956199 TCGACGAACCTTATGAATACCCT 59.044 43.478 0.00 0.00 0.00 4.34
4813 8114 0.669625 GTGGTAAGCTCGGTGTGACC 60.670 60.000 0.00 0.00 34.05 4.02
4817 8118 2.954318 GGTAAGCTCGGTGTGACCTATA 59.046 50.000 0.00 0.00 35.66 1.31
4820 8121 3.735237 AGCTCGGTGTGACCTATAATG 57.265 47.619 0.00 0.00 35.66 1.90
4821 8122 3.031736 AGCTCGGTGTGACCTATAATGT 58.968 45.455 0.00 0.00 35.66 2.71
4822 8123 3.068307 AGCTCGGTGTGACCTATAATGTC 59.932 47.826 0.00 0.00 35.66 3.06
4825 8126 2.480845 GGTGTGACCTATAATGTCGCC 58.519 52.381 11.18 4.71 41.42 5.54
4858 8159 1.860240 AGCCCCTACCTCTCATCACTA 59.140 52.381 0.00 0.00 0.00 2.74
4859 8160 2.247635 AGCCCCTACCTCTCATCACTAA 59.752 50.000 0.00 0.00 0.00 2.24
4868 8169 4.038361 CCTCTCATCACTAACATTCGTCG 58.962 47.826 0.00 0.00 0.00 5.12
4870 8171 3.128764 TCTCATCACTAACATTCGTCGCT 59.871 43.478 0.00 0.00 0.00 4.93
4872 8173 4.242475 TCATCACTAACATTCGTCGCTTT 58.758 39.130 0.00 0.00 0.00 3.51
4873 8174 4.091365 TCATCACTAACATTCGTCGCTTTG 59.909 41.667 0.00 0.00 0.00 2.77
4902 8203 1.925888 CATGGGAAGAAGGGGAGGG 59.074 63.158 0.00 0.00 0.00 4.30
4993 8294 1.678123 CCATGAAGCTAGCACTGCTGT 60.678 52.381 18.83 0.00 40.10 4.40
5022 8326 5.715434 TTACCTGATGGTTTTTGCTTACC 57.285 39.130 0.00 0.00 46.05 2.85
5023 8327 2.897326 ACCTGATGGTTTTTGCTTACCC 59.103 45.455 0.00 0.00 46.05 3.69
5063 8371 4.026145 GCTCTCTGACGTGAATCTTTATGC 60.026 45.833 0.00 0.00 0.00 3.14
5064 8372 4.105486 TCTCTGACGTGAATCTTTATGCG 58.895 43.478 0.00 0.00 0.00 4.73
5065 8373 3.186909 TCTGACGTGAATCTTTATGCGG 58.813 45.455 0.00 0.00 0.00 5.69
5182 8504 7.045725 AGTAGAACGTGTGAAATATGTTTCG 57.954 36.000 9.97 2.02 45.34 3.46
5236 8558 0.889994 TGTGGATGTGAATGCCAAGC 59.110 50.000 0.00 0.00 32.68 4.01
5295 8620 3.675775 GCTTGTTGGAGCTAGACAGAGAG 60.676 52.174 0.00 0.00 39.57 3.20
5389 8726 3.946558 TGTTTTACTGTTTGGTTAGCCGT 59.053 39.130 0.00 0.00 37.67 5.68
5402 8739 0.675083 TAGCCGTTCTCCGTGTGAAA 59.325 50.000 0.00 0.00 33.66 2.69
5414 8751 4.693283 TCCGTGTGAAATATGTCCTGATC 58.307 43.478 0.00 0.00 0.00 2.92
5440 8777 8.324163 TCTTACAAAGTTTAGGATCAAGAAGC 57.676 34.615 0.00 0.00 0.00 3.86
5442 8779 6.566197 ACAAAGTTTAGGATCAAGAAGCAG 57.434 37.500 0.00 0.00 0.00 4.24
5443 8780 6.064717 ACAAAGTTTAGGATCAAGAAGCAGT 58.935 36.000 0.00 0.00 0.00 4.40
5444 8781 7.224297 ACAAAGTTTAGGATCAAGAAGCAGTA 58.776 34.615 0.00 0.00 0.00 2.74
5445 8782 7.719633 ACAAAGTTTAGGATCAAGAAGCAGTAA 59.280 33.333 0.00 0.00 0.00 2.24
5448 8785 7.454225 AGTTTAGGATCAAGAAGCAGTAAGTT 58.546 34.615 0.00 0.00 0.00 2.66
5450 8787 5.489792 AGGATCAAGAAGCAGTAAGTTCA 57.510 39.130 0.00 0.00 0.00 3.18
5458 8807 6.551385 AGAAGCAGTAAGTTCAACAGATTG 57.449 37.500 0.00 0.00 37.14 2.67
5464 8813 0.877071 AGTTCAACAGATTGCAGCCG 59.123 50.000 0.00 0.00 35.63 5.52
5484 8833 3.296628 CGTCGCAAACTAAGCACAAAAT 58.703 40.909 0.00 0.00 0.00 1.82
5496 8845 4.083581 AGCACAAAATAGACGCATGTTC 57.916 40.909 0.00 0.00 0.00 3.18
5497 8846 2.840176 GCACAAAATAGACGCATGTTCG 59.160 45.455 0.00 0.00 0.00 3.95
5498 8847 2.840176 CACAAAATAGACGCATGTTCGC 59.160 45.455 0.00 0.00 0.00 4.70
5499 8848 2.159572 ACAAAATAGACGCATGTTCGCC 60.160 45.455 0.00 0.00 0.00 5.54
5510 8859 2.223203 GCATGTTCGCCTTGAATCTGAG 60.223 50.000 0.00 0.00 39.21 3.35
5569 8919 6.716934 TCATATCAGGTTCTCCTTCAGTAC 57.283 41.667 0.00 0.00 43.07 2.73
5570 8920 6.436027 TCATATCAGGTTCTCCTTCAGTACT 58.564 40.000 0.00 0.00 43.07 2.73
5574 8924 3.829601 CAGGTTCTCCTTCAGTACTGAGT 59.170 47.826 23.97 0.00 43.07 3.41
5575 8925 3.829601 AGGTTCTCCTTCAGTACTGAGTG 59.170 47.826 23.97 19.65 42.12 3.51
5576 8926 3.574826 GGTTCTCCTTCAGTACTGAGTGT 59.425 47.826 23.97 0.00 41.13 3.55
5577 8927 4.765856 GGTTCTCCTTCAGTACTGAGTGTA 59.234 45.833 23.97 9.96 41.13 2.90
5579 8929 6.071278 GGTTCTCCTTCAGTACTGAGTGTATT 60.071 42.308 23.97 0.00 41.13 1.89
5614 8965 5.824904 GTGCATCAAATGTACTCCAGAAT 57.175 39.130 0.00 0.00 41.79 2.40
5615 8966 6.925610 GTGCATCAAATGTACTCCAGAATA 57.074 37.500 0.00 0.00 41.79 1.75
5616 8967 7.502120 GTGCATCAAATGTACTCCAGAATAT 57.498 36.000 0.00 0.00 41.79 1.28
5617 8968 8.607441 GTGCATCAAATGTACTCCAGAATATA 57.393 34.615 0.00 0.00 41.79 0.86
5618 8969 8.499162 GTGCATCAAATGTACTCCAGAATATAC 58.501 37.037 0.00 0.00 41.79 1.47
5619 8970 7.661437 TGCATCAAATGTACTCCAGAATATACC 59.339 37.037 0.00 0.00 0.00 2.73
5620 8971 7.880195 GCATCAAATGTACTCCAGAATATACCT 59.120 37.037 0.00 0.00 0.00 3.08
5621 8972 9.212641 CATCAAATGTACTCCAGAATATACCTG 57.787 37.037 0.00 0.00 0.00 4.00
5622 8973 8.319057 TCAAATGTACTCCAGAATATACCTGT 57.681 34.615 0.00 0.00 0.00 4.00
5623 8974 8.204160 TCAAATGTACTCCAGAATATACCTGTG 58.796 37.037 0.00 1.33 0.00 3.66
5624 8975 5.531122 TGTACTCCAGAATATACCTGTGC 57.469 43.478 0.00 0.00 0.00 4.57
5625 8976 3.735237 ACTCCAGAATATACCTGTGCG 57.265 47.619 4.85 0.00 0.00 5.34
5626 8977 2.365617 ACTCCAGAATATACCTGTGCGG 59.634 50.000 4.85 0.00 39.35 5.69
5627 8978 2.628178 CTCCAGAATATACCTGTGCGGA 59.372 50.000 4.85 0.00 36.31 5.54
5628 8979 2.364324 TCCAGAATATACCTGTGCGGAC 59.636 50.000 0.00 0.00 36.31 4.79
5629 8980 2.394708 CAGAATATACCTGTGCGGACG 58.605 52.381 1.60 0.00 36.31 4.79
5630 8981 1.137513 GAATATACCTGTGCGGACGC 58.862 55.000 10.13 10.13 42.35 5.19
5631 8982 0.750850 AATATACCTGTGCGGACGCT 59.249 50.000 18.04 0.00 42.51 5.07
5632 8983 0.314302 ATATACCTGTGCGGACGCTC 59.686 55.000 18.04 14.56 42.51 5.03
5633 8984 1.033202 TATACCTGTGCGGACGCTCA 61.033 55.000 18.04 18.29 41.45 4.26
5634 8985 1.884075 ATACCTGTGCGGACGCTCAA 61.884 55.000 19.71 8.18 42.76 3.02
5635 8986 2.089887 TACCTGTGCGGACGCTCAAA 62.090 55.000 19.71 8.05 42.76 2.69
5636 8987 2.250939 CCTGTGCGGACGCTCAAAA 61.251 57.895 19.71 0.00 42.76 2.44
5637 8988 1.646540 CTGTGCGGACGCTCAAAAA 59.353 52.632 19.71 0.58 42.76 1.94
5684 9035 1.447489 CACGGCCTGCAGAAGAGAG 60.447 63.158 17.39 0.00 0.00 3.20
5722 9073 2.064762 CAGCAGTCAAAGTCTTCCTCG 58.935 52.381 0.00 0.00 0.00 4.63
5764 9115 2.664436 CCGCCGAACGTTCTTGACC 61.664 63.158 24.80 8.25 41.42 4.02
5790 9141 0.458260 GCGACTCTTCCTCTTCCTCC 59.542 60.000 0.00 0.00 0.00 4.30
5810 9161 3.384789 TCCCACTCTCACGAATCAATAGG 59.615 47.826 0.00 0.00 0.00 2.57
5835 9192 1.192146 TCTTCCTCCCCACTTCCGTG 61.192 60.000 0.00 0.00 40.89 4.94
6005 9362 3.812019 CGTCGTCGTCCCTCCCAG 61.812 72.222 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.306148 CCATTGCAGCATCTCGACAT 58.694 50.000 0.00 0.00 0.00 3.06
1 2 0.745486 CCCATTGCAGCATCTCGACA 60.745 55.000 0.00 0.00 0.00 4.35
2 3 0.745845 ACCCATTGCAGCATCTCGAC 60.746 55.000 0.00 0.00 0.00 4.20
3 4 0.462581 GACCCATTGCAGCATCTCGA 60.463 55.000 0.00 0.00 0.00 4.04
4 5 0.745486 TGACCCATTGCAGCATCTCG 60.745 55.000 0.00 0.00 0.00 4.04
5 6 0.737219 GTGACCCATTGCAGCATCTC 59.263 55.000 0.00 0.00 0.00 2.75
6 7 0.682209 GGTGACCCATTGCAGCATCT 60.682 55.000 0.00 0.00 33.05 2.90
7 8 1.811860 GGTGACCCATTGCAGCATC 59.188 57.895 0.00 0.00 33.05 3.91
8 9 2.048023 CGGTGACCCATTGCAGCAT 61.048 57.895 0.00 0.00 33.05 3.79
9 10 2.672651 CGGTGACCCATTGCAGCA 60.673 61.111 0.00 0.00 33.05 4.41
10 11 4.120331 GCGGTGACCCATTGCAGC 62.120 66.667 0.00 0.00 0.00 5.25
11 12 3.803082 CGCGGTGACCCATTGCAG 61.803 66.667 0.00 0.00 0.00 4.41
12 13 3.620419 ATCGCGGTGACCCATTGCA 62.620 57.895 6.13 0.00 0.00 4.08
13 14 2.824041 ATCGCGGTGACCCATTGC 60.824 61.111 6.13 0.00 0.00 3.56
14 15 3.101209 CATCGCGGTGACCCATTG 58.899 61.111 15.97 0.00 0.00 2.82
15 16 1.966901 TAGCATCGCGGTGACCCATT 61.967 55.000 26.37 2.88 0.00 3.16
16 17 2.431454 TAGCATCGCGGTGACCCAT 61.431 57.895 26.37 5.11 0.00 4.00
17 18 3.071837 TAGCATCGCGGTGACCCA 61.072 61.111 26.37 0.39 0.00 4.51
18 19 2.585247 GTAGCATCGCGGTGACCC 60.585 66.667 26.37 5.28 0.00 4.46
19 20 2.679132 ATCGTAGCATCGCGGTGACC 62.679 60.000 26.37 6.15 0.00 4.02
20 21 1.299165 ATCGTAGCATCGCGGTGAC 60.299 57.895 26.37 14.74 0.00 3.67
21 22 1.299089 CATCGTAGCATCGCGGTGA 60.299 57.895 26.37 0.69 41.23 4.02
22 23 2.302952 CCATCGTAGCATCGCGGTG 61.303 63.158 16.79 16.79 38.77 4.94
23 24 2.027605 CCATCGTAGCATCGCGGT 59.972 61.111 6.13 0.00 0.00 5.68
24 25 2.693250 TTCCCATCGTAGCATCGCGG 62.693 60.000 6.13 0.00 0.00 6.46
25 26 0.667487 ATTCCCATCGTAGCATCGCG 60.667 55.000 0.00 0.00 0.00 5.87
26 27 1.071605 GATTCCCATCGTAGCATCGC 58.928 55.000 0.00 0.00 0.00 4.58
27 28 2.061773 GTGATTCCCATCGTAGCATCG 58.938 52.381 0.00 0.00 31.08 3.84
28 29 3.393089 AGTGATTCCCATCGTAGCATC 57.607 47.619 0.00 0.00 31.08 3.91
29 30 3.259374 CCTAGTGATTCCCATCGTAGCAT 59.741 47.826 0.00 0.00 31.08 3.79
30 31 2.628178 CCTAGTGATTCCCATCGTAGCA 59.372 50.000 0.00 0.00 31.08 3.49
31 32 2.891580 TCCTAGTGATTCCCATCGTAGC 59.108 50.000 0.00 0.00 31.08 3.58
32 33 3.057174 GCTCCTAGTGATTCCCATCGTAG 60.057 52.174 0.00 0.00 31.08 3.51
33 34 2.891580 GCTCCTAGTGATTCCCATCGTA 59.108 50.000 0.00 0.00 31.08 3.43
34 35 1.689273 GCTCCTAGTGATTCCCATCGT 59.311 52.381 0.00 0.00 31.08 3.73
35 36 1.967066 AGCTCCTAGTGATTCCCATCG 59.033 52.381 0.00 0.00 31.08 3.84
36 37 2.549778 GCAGCTCCTAGTGATTCCCATC 60.550 54.545 0.00 0.00 0.00 3.51
37 38 1.419387 GCAGCTCCTAGTGATTCCCAT 59.581 52.381 0.00 0.00 0.00 4.00
38 39 0.833287 GCAGCTCCTAGTGATTCCCA 59.167 55.000 0.00 0.00 0.00 4.37
39 40 0.833287 TGCAGCTCCTAGTGATTCCC 59.167 55.000 0.00 0.00 0.00 3.97
40 41 2.093235 AGTTGCAGCTCCTAGTGATTCC 60.093 50.000 0.00 0.00 0.00 3.01
41 42 3.258971 AGTTGCAGCTCCTAGTGATTC 57.741 47.619 0.00 0.00 0.00 2.52
42 43 4.026744 TCTAGTTGCAGCTCCTAGTGATT 58.973 43.478 6.25 0.00 32.01 2.57
43 44 3.383185 GTCTAGTTGCAGCTCCTAGTGAT 59.617 47.826 6.25 0.00 32.01 3.06
44 45 2.755655 GTCTAGTTGCAGCTCCTAGTGA 59.244 50.000 6.25 0.00 32.01 3.41
45 46 2.478709 CGTCTAGTTGCAGCTCCTAGTG 60.479 54.545 6.25 8.24 32.01 2.74
46 47 1.746220 CGTCTAGTTGCAGCTCCTAGT 59.254 52.381 6.25 0.00 32.01 2.57
47 48 1.066303 CCGTCTAGTTGCAGCTCCTAG 59.934 57.143 6.25 5.95 0.00 3.02
48 49 1.103803 CCGTCTAGTTGCAGCTCCTA 58.896 55.000 6.25 0.00 0.00 2.94
49 50 0.900647 ACCGTCTAGTTGCAGCTCCT 60.901 55.000 6.25 0.00 0.00 3.69
50 51 0.737715 CACCGTCTAGTTGCAGCTCC 60.738 60.000 6.25 0.00 0.00 4.70
51 52 0.243907 TCACCGTCTAGTTGCAGCTC 59.756 55.000 6.25 0.00 0.00 4.09
52 53 0.038159 GTCACCGTCTAGTTGCAGCT 60.038 55.000 8.54 8.54 0.00 4.24
53 54 0.319555 TGTCACCGTCTAGTTGCAGC 60.320 55.000 0.00 0.00 0.00 5.25
54 55 1.419374 GTGTCACCGTCTAGTTGCAG 58.581 55.000 0.00 0.00 0.00 4.41
55 56 0.032952 GGTGTCACCGTCTAGTTGCA 59.967 55.000 6.18 0.00 0.00 4.08
56 57 0.669625 GGGTGTCACCGTCTAGTTGC 60.670 60.000 15.93 0.00 39.83 4.17
57 58 3.509388 GGGTGTCACCGTCTAGTTG 57.491 57.895 15.93 0.00 39.83 3.16
66 67 1.265905 GTTCAACAATCGGGTGTCACC 59.734 52.381 14.13 14.13 37.60 4.02
67 68 1.265905 GGTTCAACAATCGGGTGTCAC 59.734 52.381 0.00 0.00 0.00 3.67
68 69 1.134068 TGGTTCAACAATCGGGTGTCA 60.134 47.619 0.00 0.00 0.00 3.58
69 70 1.535462 CTGGTTCAACAATCGGGTGTC 59.465 52.381 0.00 0.00 0.00 3.67
70 71 1.142060 TCTGGTTCAACAATCGGGTGT 59.858 47.619 0.00 0.00 0.00 4.16
71 72 1.806542 CTCTGGTTCAACAATCGGGTG 59.193 52.381 0.00 0.00 0.00 4.61
72 73 1.697432 TCTCTGGTTCAACAATCGGGT 59.303 47.619 0.00 0.00 0.00 5.28
73 74 2.350522 CTCTCTGGTTCAACAATCGGG 58.649 52.381 0.00 0.00 0.00 5.14
74 75 1.734465 GCTCTCTGGTTCAACAATCGG 59.266 52.381 0.00 0.00 0.00 4.18
75 76 2.416747 TGCTCTCTGGTTCAACAATCG 58.583 47.619 0.00 0.00 0.00 3.34
76 77 3.063180 CGATGCTCTCTGGTTCAACAATC 59.937 47.826 0.00 0.00 0.00 2.67
77 78 3.005554 CGATGCTCTCTGGTTCAACAAT 58.994 45.455 0.00 0.00 0.00 2.71
78 79 2.224281 ACGATGCTCTCTGGTTCAACAA 60.224 45.455 0.00 0.00 0.00 2.83
79 80 1.344438 ACGATGCTCTCTGGTTCAACA 59.656 47.619 0.00 0.00 0.00 3.33
80 81 2.086054 ACGATGCTCTCTGGTTCAAC 57.914 50.000 0.00 0.00 0.00 3.18
81 82 2.224281 ACAACGATGCTCTCTGGTTCAA 60.224 45.455 0.00 0.00 0.00 2.69
82 83 1.344438 ACAACGATGCTCTCTGGTTCA 59.656 47.619 0.00 0.00 0.00 3.18
83 84 2.086054 ACAACGATGCTCTCTGGTTC 57.914 50.000 0.00 0.00 0.00 3.62
84 85 2.146342 CAACAACGATGCTCTCTGGTT 58.854 47.619 0.00 0.00 0.00 3.67
85 86 1.070758 ACAACAACGATGCTCTCTGGT 59.929 47.619 0.00 0.00 0.00 4.00
86 87 1.800805 ACAACAACGATGCTCTCTGG 58.199 50.000 0.00 0.00 0.00 3.86
87 88 3.123621 GGTTACAACAACGATGCTCTCTG 59.876 47.826 0.00 0.00 0.00 3.35
88 89 3.244078 TGGTTACAACAACGATGCTCTCT 60.244 43.478 0.00 0.00 0.00 3.10
89 90 3.064207 TGGTTACAACAACGATGCTCTC 58.936 45.455 0.00 0.00 0.00 3.20
90 91 3.067106 CTGGTTACAACAACGATGCTCT 58.933 45.455 0.00 0.00 0.00 4.09
91 92 2.412847 GCTGGTTACAACAACGATGCTC 60.413 50.000 0.00 0.00 0.00 4.26
92 93 1.535462 GCTGGTTACAACAACGATGCT 59.465 47.619 0.00 0.00 0.00 3.79
93 94 1.724654 CGCTGGTTACAACAACGATGC 60.725 52.381 0.00 0.00 0.00 3.91
94 95 1.795872 TCGCTGGTTACAACAACGATG 59.204 47.619 0.00 0.00 0.00 3.84
95 96 2.157834 TCGCTGGTTACAACAACGAT 57.842 45.000 0.00 0.00 0.00 3.73
96 97 1.795872 CATCGCTGGTTACAACAACGA 59.204 47.619 0.00 0.00 34.94 3.85
97 98 1.136085 CCATCGCTGGTTACAACAACG 60.136 52.381 0.00 0.00 37.79 4.10
98 99 2.611974 CCATCGCTGGTTACAACAAC 57.388 50.000 0.00 0.00 37.79 3.32
109 110 0.677731 ACCCATGTTCACCATCGCTG 60.678 55.000 0.00 0.00 0.00 5.18
110 111 0.677731 CACCCATGTTCACCATCGCT 60.678 55.000 0.00 0.00 0.00 4.93
111 112 0.960364 ACACCCATGTTCACCATCGC 60.960 55.000 0.00 0.00 34.46 4.58
112 113 1.199789 CAACACCCATGTTCACCATCG 59.800 52.381 0.00 0.00 46.46 3.84
113 114 1.067635 GCAACACCCATGTTCACCATC 60.068 52.381 0.00 0.00 46.46 3.51
114 115 0.968405 GCAACACCCATGTTCACCAT 59.032 50.000 0.00 0.00 46.46 3.55
115 116 1.451337 CGCAACACCCATGTTCACCA 61.451 55.000 0.00 0.00 46.46 4.17
116 117 1.169661 TCGCAACACCCATGTTCACC 61.170 55.000 0.00 0.00 46.46 4.02
117 118 0.881118 ATCGCAACACCCATGTTCAC 59.119 50.000 0.00 0.00 46.46 3.18
118 119 2.355197 CTATCGCAACACCCATGTTCA 58.645 47.619 0.00 0.00 46.46 3.18
119 120 1.670811 CCTATCGCAACACCCATGTTC 59.329 52.381 0.00 0.00 46.46 3.18
121 122 0.107214 CCCTATCGCAACACCCATGT 60.107 55.000 0.00 0.00 42.46 3.21
122 123 0.819259 CCCCTATCGCAACACCCATG 60.819 60.000 0.00 0.00 0.00 3.66
123 124 1.531748 CCCCTATCGCAACACCCAT 59.468 57.895 0.00 0.00 0.00 4.00
124 125 2.675242 CCCCCTATCGCAACACCCA 61.675 63.158 0.00 0.00 0.00 4.51
125 126 1.705997 ATCCCCCTATCGCAACACCC 61.706 60.000 0.00 0.00 0.00 4.61
126 127 0.535102 CATCCCCCTATCGCAACACC 60.535 60.000 0.00 0.00 0.00 4.16
127 128 0.535102 CCATCCCCCTATCGCAACAC 60.535 60.000 0.00 0.00 0.00 3.32
128 129 1.705002 CCCATCCCCCTATCGCAACA 61.705 60.000 0.00 0.00 0.00 3.33
129 130 1.073199 CCCATCCCCCTATCGCAAC 59.927 63.158 0.00 0.00 0.00 4.17
130 131 2.153401 CCCCATCCCCCTATCGCAA 61.153 63.158 0.00 0.00 0.00 4.85
131 132 2.529136 CCCCATCCCCCTATCGCA 60.529 66.667 0.00 0.00 0.00 5.10
132 133 3.330720 CCCCCATCCCCCTATCGC 61.331 72.222 0.00 0.00 0.00 4.58
146 147 3.081409 TGGTTCTAGCTCGCCCCC 61.081 66.667 0.00 0.00 0.00 5.40
147 148 2.180159 TTGTGGTTCTAGCTCGCCCC 62.180 60.000 0.00 0.00 0.00 5.80
148 149 0.321298 TTTGTGGTTCTAGCTCGCCC 60.321 55.000 0.00 0.00 0.00 6.13
149 150 0.796927 GTTTGTGGTTCTAGCTCGCC 59.203 55.000 0.00 0.00 0.00 5.54
150 151 1.508632 TGTTTGTGGTTCTAGCTCGC 58.491 50.000 0.00 0.00 0.00 5.03
151 152 2.223377 GGTTGTTTGTGGTTCTAGCTCG 59.777 50.000 0.00 0.00 0.00 5.03
166 167 1.238439 CCAACGCATCTCTGGTTGTT 58.762 50.000 2.92 0.00 39.42 2.83
172 173 1.364626 GGAGCACCAACGCATCTCTG 61.365 60.000 0.00 0.00 35.97 3.35
180 181 3.103911 GTCGTCGGAGCACCAACG 61.104 66.667 7.39 7.39 35.59 4.10
181 182 1.593209 TTGTCGTCGGAGCACCAAC 60.593 57.895 0.00 0.00 35.59 3.77
182 183 1.593209 GTTGTCGTCGGAGCACCAA 60.593 57.895 0.00 0.00 35.59 3.67
183 184 2.028484 GTTGTCGTCGGAGCACCA 59.972 61.111 0.00 0.00 35.59 4.17
184 185 2.814183 ATCGTTGTCGTCGGAGCACC 62.814 60.000 0.00 0.00 38.33 5.01
185 186 1.443872 ATCGTTGTCGTCGGAGCAC 60.444 57.895 0.00 0.00 38.33 4.40
191 195 3.541831 CGGCCATCGTTGTCGTCG 61.542 66.667 2.24 0.00 38.33 5.12
214 218 0.180171 TCCTGCGGGTGGTATTGATG 59.820 55.000 12.43 0.00 0.00 3.07
217 221 1.094785 CTTTCCTGCGGGTGGTATTG 58.905 55.000 12.43 0.00 0.00 1.90
218 222 0.034477 CCTTTCCTGCGGGTGGTATT 60.034 55.000 12.43 0.00 0.00 1.89
229 233 1.413118 ACTTTGTTGCCCCTTTCCTG 58.587 50.000 0.00 0.00 0.00 3.86
233 237 0.908198 TGCAACTTTGTTGCCCCTTT 59.092 45.000 25.95 0.00 44.32 3.11
274 278 2.500714 TTGGTCGGTAGCACCACGT 61.501 57.895 13.51 0.00 43.93 4.49
287 291 4.364409 GACGGTTGCGCGTTGGTC 62.364 66.667 8.43 4.20 0.00 4.02
300 304 1.141881 CGAGTTGGAGGATGGACGG 59.858 63.158 0.00 0.00 0.00 4.79
301 305 1.519455 GCGAGTTGGAGGATGGACG 60.519 63.158 0.00 0.00 0.00 4.79
307 311 2.583441 CCCTGTGCGAGTTGGAGGA 61.583 63.158 0.00 0.00 0.00 3.71
308 312 2.046892 CCCTGTGCGAGTTGGAGG 60.047 66.667 0.00 0.00 0.00 4.30
323 327 0.838987 TGTGGTCAACCCTCTACCCC 60.839 60.000 0.00 0.00 34.29 4.95
326 330 0.669625 GCGTGTGGTCAACCCTCTAC 60.670 60.000 0.00 0.00 34.29 2.59
327 331 1.669440 GCGTGTGGTCAACCCTCTA 59.331 57.895 0.00 0.00 34.29 2.43
341 345 1.154836 GCAAAACGAGAGACGCGTG 60.155 57.895 20.70 3.63 46.94 5.34
342 346 1.149361 TTGCAAAACGAGAGACGCGT 61.149 50.000 13.85 13.85 46.94 6.01
344 348 0.859232 TCTTGCAAAACGAGAGACGC 59.141 50.000 0.00 0.00 46.94 5.19
350 354 0.512952 CGACCCTCTTGCAAAACGAG 59.487 55.000 0.00 3.80 0.00 4.18
359 364 1.519455 CTTAGCCGCGACCCTCTTG 60.519 63.158 8.23 0.00 0.00 3.02
367 372 1.214589 GTGTTCCTCTTAGCCGCGA 59.785 57.895 8.23 0.00 0.00 5.87
368 373 0.460284 ATGTGTTCCTCTTAGCCGCG 60.460 55.000 0.00 0.00 0.00 6.46
369 374 1.291132 GATGTGTTCCTCTTAGCCGC 58.709 55.000 0.00 0.00 0.00 6.53
370 375 2.672961 TGATGTGTTCCTCTTAGCCG 57.327 50.000 0.00 0.00 0.00 5.52
371 376 2.680339 GCTTGATGTGTTCCTCTTAGCC 59.320 50.000 0.00 0.00 0.00 3.93
384 404 1.541147 CACATCCAAACCGCTTGATGT 59.459 47.619 0.00 0.00 37.17 3.06
412 432 3.175240 CAACTCACGCGAGCTCCG 61.175 66.667 15.93 19.02 43.66 4.63
423 443 1.367471 CTCCGTGCTGGTCAACTCA 59.633 57.895 0.00 0.00 39.52 3.41
424 444 2.029844 GCTCCGTGCTGGTCAACTC 61.030 63.158 0.00 0.00 39.52 3.01
467 487 8.662781 ATCTGTACGCACTACATTATGAAAAT 57.337 30.769 0.00 0.00 34.69 1.82
471 491 8.487313 AAAAATCTGTACGCACTACATTATGA 57.513 30.769 0.00 0.00 34.69 2.15
499 521 9.801714 GATCAAAGTTTGCAATATTTGACTTTG 57.198 29.630 29.46 29.46 45.12 2.77
571 599 4.606457 AATGAGTTGCAGCTTCGTATTC 57.394 40.909 3.97 0.00 0.00 1.75
580 610 7.137426 CCTTTAGATTCATAATGAGTTGCAGC 58.863 38.462 0.00 0.00 0.00 5.25
636 666 9.617523 AATTGATCAAGTTTGTTTCTGGAAAAT 57.382 25.926 14.54 0.00 31.33 1.82
637 667 9.447157 AAATTGATCAAGTTTGTTTCTGGAAAA 57.553 25.926 15.05 0.00 31.33 2.29
640 670 7.492020 CACAAATTGATCAAGTTTGTTTCTGGA 59.508 33.333 27.78 2.48 42.35 3.86
641 671 7.492020 TCACAAATTGATCAAGTTTGTTTCTGG 59.508 33.333 27.78 21.26 42.35 3.86
643 673 9.090692 CTTCACAAATTGATCAAGTTTGTTTCT 57.909 29.630 27.78 15.40 42.35 2.52
644 674 8.872845 ACTTCACAAATTGATCAAGTTTGTTTC 58.127 29.630 27.78 0.00 42.35 2.78
645 675 8.776376 ACTTCACAAATTGATCAAGTTTGTTT 57.224 26.923 27.78 16.89 42.35 2.83
646 676 8.776376 AACTTCACAAATTGATCAAGTTTGTT 57.224 26.923 27.78 19.90 42.35 2.83
681 711 3.146066 TCAAGCGGTGCACTAGATTTTT 58.854 40.909 17.98 0.00 0.00 1.94
684 714 1.406069 CCTCAAGCGGTGCACTAGATT 60.406 52.381 17.98 13.23 0.00 2.40
685 715 0.176680 CCTCAAGCGGTGCACTAGAT 59.823 55.000 17.98 7.32 0.00 1.98
687 717 1.448540 CCCTCAAGCGGTGCACTAG 60.449 63.158 17.98 12.41 0.00 2.57
688 718 1.888436 CTCCCTCAAGCGGTGCACTA 61.888 60.000 17.98 0.00 0.00 2.74
689 719 3.241530 TCCCTCAAGCGGTGCACT 61.242 61.111 17.98 0.00 0.00 4.40
690 720 2.167398 TACTCCCTCAAGCGGTGCAC 62.167 60.000 8.80 8.80 0.00 4.57
933 1796 1.562575 GAACCTACCGTGGCGTGTTG 61.563 60.000 0.00 0.00 0.00 3.33
934 1797 1.301165 GAACCTACCGTGGCGTGTT 60.301 57.895 0.00 0.00 0.00 3.32
1179 2065 3.508840 GAATGGCGCGAACAGGGG 61.509 66.667 12.10 0.00 0.00 4.79
1216 2102 4.295119 AGTGACGGCGGTGACACC 62.295 66.667 15.13 15.13 35.56 4.16
1259 2145 4.722700 TCCAGGAAAGCAGCCCGC 62.723 66.667 0.00 0.00 42.91 6.13
1261 2147 0.750911 CTGATCCAGGAAAGCAGCCC 60.751 60.000 0.00 0.00 0.00 5.19
1305 2191 0.035458 AAGGGAACACGAAGGAGCAG 59.965 55.000 0.00 0.00 0.00 4.24
1343 2229 4.457496 ATGACGGCAGGGTGCGAG 62.457 66.667 0.00 0.00 46.21 5.03
1367 2253 2.695666 CGGAATGAGAAGCCTAGGAAGA 59.304 50.000 14.75 0.00 0.00 2.87
1374 2260 1.726853 CGAAACGGAATGAGAAGCCT 58.273 50.000 0.00 0.00 0.00 4.58
1545 2435 4.708421 AGTGCACGGAAATAAGGTAGTAGA 59.292 41.667 12.01 0.00 0.00 2.59
1546 2436 5.007385 AGTGCACGGAAATAAGGTAGTAG 57.993 43.478 12.01 0.00 0.00 2.57
1547 2437 5.410355 AAGTGCACGGAAATAAGGTAGTA 57.590 39.130 12.01 0.00 0.00 1.82
1548 2438 3.975168 AGTGCACGGAAATAAGGTAGT 57.025 42.857 12.01 0.00 0.00 2.73
1561 2453 2.159476 AGCAGCATGAATAAAGTGCACG 60.159 45.455 12.01 0.00 39.69 5.34
1565 2457 3.377485 AGAGCAGCAGCATGAATAAAGTG 59.623 43.478 3.17 0.00 45.49 3.16
1574 2466 1.667154 ATGGCAAGAGCAGCAGCATG 61.667 55.000 3.17 0.41 45.49 4.06
1608 2500 8.622572 TTGGTATCTATCCATGGCTATGAATA 57.377 34.615 12.26 0.00 36.36 1.75
1669 2562 4.445052 GCAGTGATTCTGATCTCATTCTCG 59.555 45.833 0.00 0.00 46.27 4.04
1684 2577 2.185350 CTCCCGAGCGCAGTGATT 59.815 61.111 11.47 0.00 0.00 2.57
1723 2616 1.202758 ACCTCAAGCAACGACATTCCA 60.203 47.619 0.00 0.00 0.00 3.53
1726 2619 1.873591 GTCACCTCAAGCAACGACATT 59.126 47.619 0.00 0.00 0.00 2.71
1746 2639 2.019984 GACAAAGCATAGCAAGGGGAG 58.980 52.381 0.00 0.00 0.00 4.30
1747 2640 1.354031 TGACAAAGCATAGCAAGGGGA 59.646 47.619 0.00 0.00 0.00 4.81
1773 2666 8.698973 TTATTGAACACCAGATAAGGACAAAA 57.301 30.769 0.00 0.00 0.00 2.44
1836 2757 6.437477 ACATATCTCCACTATCGAGGCATTTA 59.563 38.462 0.00 0.00 0.00 1.40
1854 2775 6.737720 TGAGCAGTATTCCTGAACATATCT 57.262 37.500 0.00 0.00 44.49 1.98
1867 2788 4.103785 AGGCATAGGATGTTGAGCAGTATT 59.896 41.667 0.00 0.00 0.00 1.89
1869 2790 3.041211 AGGCATAGGATGTTGAGCAGTA 58.959 45.455 0.00 0.00 0.00 2.74
1997 2926 1.263356 TCTCTTACTGTGTTCCCCCG 58.737 55.000 0.00 0.00 0.00 5.73
2016 2967 5.394883 GCATCAAGATTTGTCCCATGTGATT 60.395 40.000 0.00 0.00 0.00 2.57
2021 2972 4.459390 TTGCATCAAGATTTGTCCCATG 57.541 40.909 0.00 0.00 0.00 3.66
2172 3123 7.148239 GGCCCAGAGGTAAATAAATATCAATCG 60.148 40.741 0.00 0.00 34.57 3.34
2190 3141 3.443681 ACAATAAAATTCACGGCCCAGAG 59.556 43.478 0.00 0.00 0.00 3.35
2413 4097 5.983540 GAACCTAATGTTCCATCTCTCACT 58.016 41.667 0.00 0.00 46.35 3.41
2474 4162 3.007473 ACCAAGAAAACCCAAAGTCGA 57.993 42.857 0.00 0.00 0.00 4.20
2502 4190 4.150897 AGTGGACAAAGAAGCACTACAA 57.849 40.909 0.00 0.00 0.00 2.41
2529 4217 0.531090 CCGTTGTCAGGGTCGAACAA 60.531 55.000 1.31 0.00 0.00 2.83
2568 4256 8.962679 TGGTAAGTAAGTGAAACAAAGACAAAT 58.037 29.630 0.00 0.00 41.43 2.32
2636 4325 9.103861 TGCACACGAGTTCATATCATTTTATTA 57.896 29.630 0.00 0.00 0.00 0.98
2637 4326 7.984391 TGCACACGAGTTCATATCATTTTATT 58.016 30.769 0.00 0.00 0.00 1.40
2724 4414 2.958355 CTGACCACCAACAGGTTTTCAT 59.042 45.455 0.00 0.00 40.09 2.57
2791 4484 9.695526 TCAGTTATGAATTCAACCAAAATGAAG 57.304 29.630 13.09 0.00 39.92 3.02
3097 4790 0.467384 CCAGAGGCTCCCATGTGTAG 59.533 60.000 11.71 0.00 0.00 2.74
3306 5012 9.295825 TCAATATCTGGTTGTACAAAAATGAGT 57.704 29.630 10.51 0.00 0.00 3.41
3400 5106 4.331137 CCACAATACGCAGACAAATTACG 58.669 43.478 0.00 0.00 0.00 3.18
3658 5364 5.237996 TGTGCTCAGAAAGACATGAGAAAAG 59.762 40.000 0.00 0.00 44.68 2.27
3778 5484 1.534717 TTTTCCGGACGGAGGGAGT 60.535 57.895 13.64 0.00 46.06 3.85
3779 5485 1.218316 CTTTTCCGGACGGAGGGAG 59.782 63.158 13.64 9.15 46.06 4.30
3780 5486 2.951101 GCTTTTCCGGACGGAGGGA 61.951 63.158 13.64 1.83 46.06 4.20
3781 5487 2.436115 GCTTTTCCGGACGGAGGG 60.436 66.667 13.64 8.97 46.06 4.30
3782 5488 1.003718 AAGCTTTTCCGGACGGAGG 60.004 57.895 13.64 9.30 46.06 4.30
3783 5489 0.602905 ACAAGCTTTTCCGGACGGAG 60.603 55.000 13.64 3.27 46.06 4.63
3784 5490 0.601841 GACAAGCTTTTCCGGACGGA 60.602 55.000 1.83 9.76 43.52 4.69
3785 5491 1.574702 GGACAAGCTTTTCCGGACGG 61.575 60.000 15.65 3.96 0.00 4.79
3786 5492 1.574702 GGGACAAGCTTTTCCGGACG 61.575 60.000 22.30 0.00 32.00 4.79
3787 5493 0.250770 AGGGACAAGCTTTTCCGGAC 60.251 55.000 22.30 11.02 32.00 4.79
3788 5494 0.036306 GAGGGACAAGCTTTTCCGGA 59.964 55.000 22.30 0.00 32.00 5.14
3789 5495 0.250727 TGAGGGACAAGCTTTTCCGG 60.251 55.000 22.30 0.00 32.00 5.14
3790 5496 1.604604 TTGAGGGACAAGCTTTTCCG 58.395 50.000 22.30 2.85 34.20 4.30
3791 5497 3.306294 CCATTTGAGGGACAAGCTTTTCC 60.306 47.826 21.34 21.34 39.77 3.13
3792 5498 3.573967 TCCATTTGAGGGACAAGCTTTTC 59.426 43.478 3.91 3.91 39.77 2.29
3793 5499 3.575805 TCCATTTGAGGGACAAGCTTTT 58.424 40.909 0.00 0.00 39.77 2.27
3794 5500 3.243359 TCCATTTGAGGGACAAGCTTT 57.757 42.857 0.00 0.00 39.77 3.51
3795 5501 2.978156 TCCATTTGAGGGACAAGCTT 57.022 45.000 0.00 0.00 39.77 3.74
3796 5502 2.042162 ACATCCATTTGAGGGACAAGCT 59.958 45.455 0.00 0.00 39.77 3.74
3797 5503 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
3798 5504 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
3799 5505 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
3800 5506 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
3801 5507 5.221722 TGCTAGATACATCCATTTGAGGGAC 60.222 44.000 0.00 0.00 37.23 4.46
3802 5508 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
3803 5509 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
3804 5510 5.614308 TGTGCTAGATACATCCATTTGAGG 58.386 41.667 0.00 0.00 0.00 3.86
3805 5511 7.558161 TTTGTGCTAGATACATCCATTTGAG 57.442 36.000 0.00 0.00 0.00 3.02
3806 5512 7.936496 TTTTGTGCTAGATACATCCATTTGA 57.064 32.000 0.00 0.00 0.00 2.69
3807 5513 9.590451 AAATTTTGTGCTAGATACATCCATTTG 57.410 29.630 0.00 0.00 0.00 2.32
3808 5514 9.590451 CAAATTTTGTGCTAGATACATCCATTT 57.410 29.630 0.00 1.27 0.00 2.32
3809 5515 8.199449 CCAAATTTTGTGCTAGATACATCCATT 58.801 33.333 8.26 0.00 0.00 3.16
3810 5516 7.342799 ACCAAATTTTGTGCTAGATACATCCAT 59.657 33.333 8.26 0.00 0.00 3.41
3811 5517 6.663093 ACCAAATTTTGTGCTAGATACATCCA 59.337 34.615 8.26 0.00 0.00 3.41
3812 5518 6.974622 CACCAAATTTTGTGCTAGATACATCC 59.025 38.462 9.24 0.00 0.00 3.51
3813 5519 6.473455 GCACCAAATTTTGTGCTAGATACATC 59.527 38.462 30.14 6.79 35.92 3.06
3814 5520 6.153340 AGCACCAAATTTTGTGCTAGATACAT 59.847 34.615 35.64 17.84 42.19 2.29
3815 5521 5.476599 AGCACCAAATTTTGTGCTAGATACA 59.523 36.000 35.64 0.00 42.19 2.29
3816 5522 5.954335 AGCACCAAATTTTGTGCTAGATAC 58.046 37.500 35.64 14.26 42.19 2.24
3821 5527 6.657117 TGTATCTAGCACCAAATTTTGTGCTA 59.343 34.615 35.89 35.89 43.07 3.49
3822 5528 5.476599 TGTATCTAGCACCAAATTTTGTGCT 59.523 36.000 37.08 37.08 44.33 4.40
3823 5529 5.708948 TGTATCTAGCACCAAATTTTGTGC 58.291 37.500 30.24 30.24 37.70 4.57
3824 5530 6.974622 GGATGTATCTAGCACCAAATTTTGTG 59.025 38.462 16.10 16.10 0.00 3.33
3825 5531 6.663093 TGGATGTATCTAGCACCAAATTTTGT 59.337 34.615 8.26 0.00 0.00 2.83
3826 5532 7.099266 TGGATGTATCTAGCACCAAATTTTG 57.901 36.000 1.99 1.99 0.00 2.44
3827 5533 7.902920 ATGGATGTATCTAGCACCAAATTTT 57.097 32.000 0.00 0.00 0.00 1.82
3828 5534 7.255242 CGAATGGATGTATCTAGCACCAAATTT 60.255 37.037 0.00 0.00 0.00 1.82
3829 5535 6.205464 CGAATGGATGTATCTAGCACCAAATT 59.795 38.462 0.00 0.00 0.00 1.82
3830 5536 5.702670 CGAATGGATGTATCTAGCACCAAAT 59.297 40.000 0.00 0.00 0.00 2.32
3831 5537 5.056480 CGAATGGATGTATCTAGCACCAAA 58.944 41.667 0.00 0.00 0.00 3.28
3832 5538 4.343814 TCGAATGGATGTATCTAGCACCAA 59.656 41.667 0.00 0.00 0.00 3.67
3833 5539 3.895041 TCGAATGGATGTATCTAGCACCA 59.105 43.478 0.00 0.00 0.00 4.17
3834 5540 4.521130 TCGAATGGATGTATCTAGCACC 57.479 45.455 0.00 0.00 0.00 5.01
3835 5541 4.926238 CCTTCGAATGGATGTATCTAGCAC 59.074 45.833 0.00 0.00 0.00 4.40
3836 5542 4.832823 TCCTTCGAATGGATGTATCTAGCA 59.167 41.667 11.00 0.00 0.00 3.49
3837 5543 5.164954 GTCCTTCGAATGGATGTATCTAGC 58.835 45.833 16.14 1.46 35.87 3.42
3838 5544 6.332735 TGTCCTTCGAATGGATGTATCTAG 57.667 41.667 16.14 0.00 35.87 2.43
3839 5545 6.724893 TTGTCCTTCGAATGGATGTATCTA 57.275 37.500 16.14 2.26 35.87 1.98
3840 5546 5.605534 CTTGTCCTTCGAATGGATGTATCT 58.394 41.667 16.14 0.00 35.87 1.98
3841 5547 4.212214 GCTTGTCCTTCGAATGGATGTATC 59.788 45.833 16.14 6.84 35.87 2.24
3842 5548 4.130118 GCTTGTCCTTCGAATGGATGTAT 58.870 43.478 16.14 0.00 35.87 2.29
3843 5549 3.197766 AGCTTGTCCTTCGAATGGATGTA 59.802 43.478 16.14 6.79 35.87 2.29
3844 5550 2.026822 AGCTTGTCCTTCGAATGGATGT 60.027 45.455 16.14 2.05 35.87 3.06
3845 5551 2.636830 AGCTTGTCCTTCGAATGGATG 58.363 47.619 16.14 11.75 35.87 3.51
3846 5552 3.012518 CAAGCTTGTCCTTCGAATGGAT 58.987 45.455 18.65 1.77 35.87 3.41
3847 5553 2.426522 CAAGCTTGTCCTTCGAATGGA 58.573 47.619 18.65 11.00 0.00 3.41
3848 5554 1.470098 CCAAGCTTGTCCTTCGAATGG 59.530 52.381 24.35 2.65 0.00 3.16
3849 5555 1.470098 CCCAAGCTTGTCCTTCGAATG 59.530 52.381 24.35 5.47 0.00 2.67
3850 5556 1.351017 TCCCAAGCTTGTCCTTCGAAT 59.649 47.619 24.35 0.00 0.00 3.34
3851 5557 0.762418 TCCCAAGCTTGTCCTTCGAA 59.238 50.000 24.35 0.00 0.00 3.71
3852 5558 0.034896 GTCCCAAGCTTGTCCTTCGA 59.965 55.000 24.35 7.45 0.00 3.71
3853 5559 0.250295 TGTCCCAAGCTTGTCCTTCG 60.250 55.000 24.35 8.31 0.00 3.79
3854 5560 1.882623 CTTGTCCCAAGCTTGTCCTTC 59.117 52.381 24.35 10.65 0.00 3.46
3855 5561 1.986882 CTTGTCCCAAGCTTGTCCTT 58.013 50.000 24.35 0.00 0.00 3.36
3856 5562 0.538287 GCTTGTCCCAAGCTTGTCCT 60.538 55.000 24.35 0.00 40.01 3.85
3857 5563 1.959848 GCTTGTCCCAAGCTTGTCC 59.040 57.895 24.35 12.15 40.01 4.02
3863 5569 1.068541 CCGTAAAAGCTTGTCCCAAGC 60.069 52.381 18.69 18.69 43.31 4.01
3864 5570 2.225727 GTCCGTAAAAGCTTGTCCCAAG 59.774 50.000 0.00 0.00 0.00 3.61
3865 5571 2.223745 GTCCGTAAAAGCTTGTCCCAA 58.776 47.619 0.00 0.00 0.00 4.12
3866 5572 1.874739 CGTCCGTAAAAGCTTGTCCCA 60.875 52.381 0.00 0.00 0.00 4.37
3867 5573 0.794473 CGTCCGTAAAAGCTTGTCCC 59.206 55.000 0.00 0.00 0.00 4.46
3868 5574 0.794473 CCGTCCGTAAAAGCTTGTCC 59.206 55.000 0.00 0.00 0.00 4.02
3869 5575 1.725164 CTCCGTCCGTAAAAGCTTGTC 59.275 52.381 0.00 0.00 0.00 3.18
3870 5576 1.607251 CCTCCGTCCGTAAAAGCTTGT 60.607 52.381 0.00 0.00 0.00 3.16
3871 5577 1.076332 CCTCCGTCCGTAAAAGCTTG 58.924 55.000 0.00 0.00 0.00 4.01
3872 5578 0.036671 CCCTCCGTCCGTAAAAGCTT 60.037 55.000 0.00 0.00 0.00 3.74
3873 5579 0.901580 TCCCTCCGTCCGTAAAAGCT 60.902 55.000 0.00 0.00 0.00 3.74
3874 5580 0.459759 CTCCCTCCGTCCGTAAAAGC 60.460 60.000 0.00 0.00 0.00 3.51
3875 5581 0.893447 ACTCCCTCCGTCCGTAAAAG 59.107 55.000 0.00 0.00 0.00 2.27
3876 5582 2.214376 TACTCCCTCCGTCCGTAAAA 57.786 50.000 0.00 0.00 0.00 1.52
3877 5583 2.214376 TTACTCCCTCCGTCCGTAAA 57.786 50.000 0.00 0.00 0.00 2.01
3878 5584 2.442236 ATTACTCCCTCCGTCCGTAA 57.558 50.000 0.00 0.00 0.00 3.18
3879 5585 2.172505 TGTATTACTCCCTCCGTCCGTA 59.827 50.000 0.00 0.00 0.00 4.02
3880 5586 1.064463 TGTATTACTCCCTCCGTCCGT 60.064 52.381 0.00 0.00 0.00 4.69
3881 5587 1.683943 TGTATTACTCCCTCCGTCCG 58.316 55.000 0.00 0.00 0.00 4.79
3882 5588 5.997384 ATTATGTATTACTCCCTCCGTCC 57.003 43.478 0.00 0.00 0.00 4.79
3883 5589 7.176340 ACTGTATTATGTATTACTCCCTCCGTC 59.824 40.741 0.00 0.00 0.00 4.79
3884 5590 7.008941 ACTGTATTATGTATTACTCCCTCCGT 58.991 38.462 0.00 0.00 0.00 4.69
3885 5591 7.463961 ACTGTATTATGTATTACTCCCTCCG 57.536 40.000 0.00 0.00 0.00 4.63
3907 5697 7.334421 CACTATGCATGTGTAAAGGAGTAAACT 59.666 37.037 10.16 0.00 0.00 2.66
3945 5954 5.293324 GCGTGTCATAAATTAGATGTGGTGA 59.707 40.000 1.38 0.00 0.00 4.02
3979 5989 9.696917 AGAAACAAAAAGGCAAGAAATAGTATG 57.303 29.630 0.00 0.00 0.00 2.39
3989 5999 7.769272 TTCAATGTAGAAACAAAAAGGCAAG 57.231 32.000 0.00 0.00 39.58 4.01
4010 6020 9.753674 ATTCACCCTCAAGATTTAAACTATTCA 57.246 29.630 0.00 0.00 0.00 2.57
4045 6055 6.506500 AGAATGCAAGAAAACTAGATGGTG 57.493 37.500 0.00 0.00 0.00 4.17
4047 6057 8.273780 ACTTAGAATGCAAGAAAACTAGATGG 57.726 34.615 0.00 0.00 0.00 3.51
4075 7371 1.427020 GAGCCGATTGAAGCACTGC 59.573 57.895 0.00 0.00 0.00 4.40
4342 7639 3.667282 ACGTCGACCACCTCCGTG 61.667 66.667 10.58 0.00 39.91 4.94
4438 7735 1.771255 AGGGGGTTGATACTCATCTGC 59.229 52.381 0.00 0.00 31.93 4.26
4665 7962 4.272100 GCATGCAAAAGCCACAGG 57.728 55.556 14.21 0.00 0.00 4.00
4783 8083 1.987855 CTTACCACGGCCTGGAGGA 60.988 63.158 23.24 8.88 43.95 3.71
4813 8114 2.743938 AGAAGCACGGCGACATTATAG 58.256 47.619 16.62 0.00 0.00 1.31
4817 8118 1.868997 CAAGAAGCACGGCGACATT 59.131 52.632 16.62 4.17 0.00 2.71
4838 8139 0.639392 AGTGATGAGAGGTAGGGGCT 59.361 55.000 0.00 0.00 0.00 5.19
4858 8159 0.238289 CCTGCAAAGCGACGAATGTT 59.762 50.000 0.00 0.00 0.00 2.71
4859 8160 0.884704 ACCTGCAAAGCGACGAATGT 60.885 50.000 0.00 0.00 0.00 2.71
4868 8169 2.629656 ATGCCACGACCTGCAAAGC 61.630 57.895 0.00 0.00 41.50 3.51
4870 8171 2.267351 CCATGCCACGACCTGCAAA 61.267 57.895 0.00 0.00 41.50 3.68
4872 8173 4.720902 CCCATGCCACGACCTGCA 62.721 66.667 0.00 0.00 42.52 4.41
4873 8174 3.918253 TTCCCATGCCACGACCTGC 62.918 63.158 0.00 0.00 0.00 4.85
4932 8233 2.487934 CCAGTTCAATCTAGCATCGGG 58.512 52.381 0.00 0.00 0.00 5.14
4972 8273 0.617413 AGCAGTGCTAGCTTCATGGT 59.383 50.000 18.11 11.44 39.87 3.55
5022 8326 1.679977 CCCCACATGGAGCAACAGG 60.680 63.158 0.00 0.00 37.39 4.00
5023 8327 2.345760 GCCCCACATGGAGCAACAG 61.346 63.158 0.00 0.00 37.39 3.16
5063 8371 0.452184 AGTCGTACAGCATCAGACCG 59.548 55.000 0.00 0.00 32.70 4.79
5064 8372 2.263077 CAAGTCGTACAGCATCAGACC 58.737 52.381 0.00 0.00 32.70 3.85
5065 8373 1.656095 GCAAGTCGTACAGCATCAGAC 59.344 52.381 0.00 0.00 0.00 3.51
5182 8504 2.545322 CGAGATAACTAAACGGGAGGCC 60.545 54.545 0.00 0.00 0.00 5.19
5236 8558 1.334869 ACTTCGAAGCAAACAAGCCTG 59.665 47.619 24.86 0.00 34.23 4.85
5295 8620 7.507616 TCTCACCTTAATCTCCCTTCTCTAATC 59.492 40.741 0.00 0.00 0.00 1.75
5389 8726 4.221924 TCAGGACATATTTCACACGGAGAA 59.778 41.667 0.00 0.00 0.00 2.87
5414 8751 8.447053 GCTTCTTGATCCTAAACTTTGTAAGAG 58.553 37.037 0.00 0.00 0.00 2.85
5440 8777 4.470462 GCTGCAATCTGTTGAACTTACTG 58.530 43.478 0.00 0.00 37.53 2.74
5442 8779 3.667960 CGGCTGCAATCTGTTGAACTTAC 60.668 47.826 0.50 0.00 37.53 2.34
5443 8780 2.483877 CGGCTGCAATCTGTTGAACTTA 59.516 45.455 0.50 0.00 37.53 2.24
5444 8781 1.267806 CGGCTGCAATCTGTTGAACTT 59.732 47.619 0.50 0.00 37.53 2.66
5445 8782 0.877071 CGGCTGCAATCTGTTGAACT 59.123 50.000 0.50 0.00 37.53 3.01
5448 8785 1.291184 CGACGGCTGCAATCTGTTGA 61.291 55.000 0.50 0.00 37.53 3.18
5450 8787 2.680913 GCGACGGCTGCAATCTGTT 61.681 57.895 0.50 0.00 35.83 3.16
5458 8807 1.132640 CTTAGTTTGCGACGGCTGC 59.867 57.895 0.00 0.00 40.82 5.25
5464 8813 5.564127 GTCTATTTTGTGCTTAGTTTGCGAC 59.436 40.000 0.00 0.00 0.00 5.19
5484 8833 0.245266 TCAAGGCGAACATGCGTCTA 59.755 50.000 0.18 0.00 46.79 2.59
5498 8847 1.661341 CTTCCGCCTCAGATTCAAGG 58.339 55.000 1.70 1.70 35.65 3.61
5499 8848 1.012841 GCTTCCGCCTCAGATTCAAG 58.987 55.000 0.00 0.00 0.00 3.02
5514 8864 0.234884 CTTTGTGTTCGACGGGCTTC 59.765 55.000 0.00 0.00 0.00 3.86
5555 8905 4.857509 ACACTCAGTACTGAAGGAGAAC 57.142 45.455 25.14 0.00 39.39 3.01
5584 8934 6.540189 GGAGTACATTTGATGCACTTGATAGT 59.460 38.462 0.00 0.00 37.02 2.12
5585 8935 6.539826 TGGAGTACATTTGATGCACTTGATAG 59.460 38.462 0.00 0.00 37.02 2.08
5588 8938 4.650734 TGGAGTACATTTGATGCACTTGA 58.349 39.130 0.00 0.00 37.02 3.02
5605 8956 2.365617 CCGCACAGGTATATTCTGGAGT 59.634 50.000 9.77 0.00 36.62 3.85
5606 8957 2.628178 TCCGCACAGGTATATTCTGGAG 59.372 50.000 9.77 4.64 41.99 3.86
5607 8958 2.364324 GTCCGCACAGGTATATTCTGGA 59.636 50.000 9.77 0.00 41.99 3.86
5608 8959 2.755650 GTCCGCACAGGTATATTCTGG 58.244 52.381 9.77 2.51 41.99 3.86
5609 8960 2.394708 CGTCCGCACAGGTATATTCTG 58.605 52.381 4.98 4.98 41.99 3.02
5610 8961 1.269621 GCGTCCGCACAGGTATATTCT 60.270 52.381 6.82 0.00 41.99 2.40
5611 8962 1.137513 GCGTCCGCACAGGTATATTC 58.862 55.000 6.82 0.00 41.99 1.75
5612 8963 0.750850 AGCGTCCGCACAGGTATATT 59.249 50.000 14.70 0.00 44.88 1.28
5613 8964 0.314302 GAGCGTCCGCACAGGTATAT 59.686 55.000 14.70 0.00 44.88 0.86
5614 8965 1.033202 TGAGCGTCCGCACAGGTATA 61.033 55.000 14.70 0.00 44.88 1.47
5615 8966 1.884075 TTGAGCGTCCGCACAGGTAT 61.884 55.000 14.70 0.00 42.11 2.73
5616 8967 2.089887 TTTGAGCGTCCGCACAGGTA 62.090 55.000 14.70 0.00 42.11 3.08
5617 8968 2.933878 TTTTGAGCGTCCGCACAGGT 62.934 55.000 14.70 0.00 42.11 4.00
5618 8969 1.781025 TTTTTGAGCGTCCGCACAGG 61.781 55.000 14.70 0.00 42.11 4.00
5619 8970 1.646540 TTTTTGAGCGTCCGCACAG 59.353 52.632 14.70 0.00 42.11 3.66
5620 8971 3.814991 TTTTTGAGCGTCCGCACA 58.185 50.000 14.70 11.13 44.88 4.57
5636 8987 8.556213 TTTACGCACAGGTATATTCTCTTTTT 57.444 30.769 0.00 0.00 0.00 1.94
5637 8988 8.732746 ATTTACGCACAGGTATATTCTCTTTT 57.267 30.769 0.00 0.00 0.00 2.27
5638 8989 9.998106 ATATTTACGCACAGGTATATTCTCTTT 57.002 29.630 0.00 0.00 0.00 2.52
5641 8992 9.850628 TGTATATTTACGCACAGGTATATTCTC 57.149 33.333 0.00 0.00 0.00 2.87
5684 9035 1.731093 GACTAGCCAGTCTCCTCGC 59.269 63.158 4.92 0.00 46.56 5.03
5697 9048 4.021544 AGGAAGACTTTGACTGCTGACTAG 60.022 45.833 0.00 0.00 0.00 2.57
5722 9073 1.666189 GCGGTTGACTATTTCTCCTGC 59.334 52.381 0.00 0.00 0.00 4.85
5764 9115 4.452733 GGAAGAGTCGCCCGTGGG 62.453 72.222 0.00 0.00 38.57 4.61
5790 9141 3.126831 GCCTATTGATTCGTGAGAGTGG 58.873 50.000 0.00 0.00 43.69 4.00
5810 9161 1.077429 GTGGGGAGGAAGATGTGGC 60.077 63.158 0.00 0.00 0.00 5.01
5984 9341 4.157958 GAGGGACGACGACGACGG 62.158 72.222 22.36 6.21 44.46 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.