Multiple sequence alignment - TraesCS4A01G207700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G207700 chr4A 100.000 7866 0 0 856 8721 500912145 500904280 0.000000e+00 14526.0
1 TraesCS4A01G207700 chr4A 100.000 541 0 0 1 541 500913000 500912460 0.000000e+00 1000.0
2 TraesCS4A01G207700 chr4A 85.714 630 63 7 3603 4229 238415958 238416563 2.650000e-179 640.0
3 TraesCS4A01G207700 chr4A 85.032 628 69 10 3603 4228 92489984 92489380 4.470000e-172 616.0
4 TraesCS4A01G207700 chr4A 88.913 460 44 3 3772 4229 344049327 344049781 2.130000e-155 560.0
5 TraesCS4A01G207700 chr4A 100.000 69 0 0 3471 3539 500909495 500909427 2.560000e-25 128.0
6 TraesCS4A01G207700 chr4A 100.000 69 0 0 3506 3574 500909530 500909462 2.560000e-25 128.0
7 TraesCS4A01G207700 chr4A 100.000 34 0 0 3471 3504 500909460 500909427 7.310000e-06 63.9
8 TraesCS4A01G207700 chr4A 100.000 34 0 0 3541 3574 500909530 500909497 7.310000e-06 63.9
9 TraesCS4A01G207700 chr4D 96.341 4017 127 11 4717 8721 88129299 88125291 0.000000e+00 6586.0
10 TraesCS4A01G207700 chr4D 95.482 1328 54 6 2180 3504 88131829 88130505 0.000000e+00 2115.0
11 TraesCS4A01G207700 chr4D 94.171 1321 67 9 861 2177 88133252 88131938 0.000000e+00 2004.0
12 TraesCS4A01G207700 chr4D 93.705 826 49 3 3858 4682 88130211 88129388 0.000000e+00 1234.0
13 TraesCS4A01G207700 chr4D 85.578 631 74 4 3603 4231 27369796 27369181 0.000000e+00 645.0
14 TraesCS4A01G207700 chr4D 92.932 382 21 3 163 541 88133687 88133309 1.280000e-152 551.0
15 TraesCS4A01G207700 chr4D 92.568 148 10 1 3603 3750 88129988 88129842 2.470000e-50 211.0
16 TraesCS4A01G207700 chr4D 92.308 52 2 1 3555 3606 160398040 160397991 1.210000e-08 73.1
17 TraesCS4A01G207700 chr4B 96.723 3265 94 7 4743 8002 124749340 124746084 0.000000e+00 5424.0
18 TraesCS4A01G207700 chr4B 94.901 1314 50 7 2180 3484 124752073 124750768 0.000000e+00 2039.0
19 TraesCS4A01G207700 chr4B 94.184 1324 72 5 856 2177 124753503 124752183 0.000000e+00 2013.0
20 TraesCS4A01G207700 chr4B 93.042 733 40 7 7999 8721 124745779 124745048 0.000000e+00 1061.0
21 TraesCS4A01G207700 chr4B 90.850 459 25 6 4238 4682 124750757 124750302 4.510000e-167 599.0
22 TraesCS4A01G207700 chr4B 92.611 203 14 1 188 390 124753949 124753748 3.080000e-74 291.0
23 TraesCS4A01G207700 chr4B 96.023 176 3 2 370 541 124753735 124753560 5.150000e-72 283.0
24 TraesCS4A01G207700 chr4B 96.154 52 0 1 3555 3606 33074903 33074854 5.610000e-12 84.2
25 TraesCS4A01G207700 chr5A 86.624 628 58 7 3603 4228 363885199 363885802 0.000000e+00 671.0
26 TraesCS4A01G207700 chr5A 84.945 631 69 7 3603 4231 589925261 589924655 4.470000e-172 616.0
27 TraesCS4A01G207700 chr5A 94.545 165 9 0 1 165 491700239 491700075 1.120000e-63 255.0
28 TraesCS4A01G207700 chr7B 86.465 628 57 9 3603 4228 184876723 184876122 0.000000e+00 664.0
29 TraesCS4A01G207700 chr7B 93.827 162 10 0 1 162 679528471 679528632 2.430000e-60 244.0
30 TraesCS4A01G207700 chr7B 83.268 257 26 6 3603 3859 513954269 513954030 4.100000e-53 220.0
31 TraesCS4A01G207700 chr2B 86.328 629 60 7 3603 4229 226019474 226020078 0.000000e+00 662.0
32 TraesCS4A01G207700 chr2A 86.328 629 60 6 3603 4229 408796601 408795997 0.000000e+00 662.0
33 TraesCS4A01G207700 chr2A 83.121 628 80 7 3603 4228 488458082 488457479 4.600000e-152 549.0
34 TraesCS4A01G207700 chr2A 93.865 163 10 0 1 163 232430310 232430472 6.760000e-61 246.0
35 TraesCS4A01G207700 chr6B 86.006 636 61 9 3603 4234 236160075 236159464 0.000000e+00 656.0
36 TraesCS4A01G207700 chr6A 86.146 628 61 7 3603 4228 151445250 151445853 0.000000e+00 654.0
37 TraesCS4A01G207700 chr6A 82.194 629 68 13 3603 4229 377421509 377422095 1.310000e-137 501.0
38 TraesCS4A01G207700 chr6A 92.308 52 2 1 3555 3606 255385488 255385439 1.210000e-08 73.1
39 TraesCS4A01G207700 chr6A 92.308 52 2 1 3555 3606 255445714 255445665 1.210000e-08 73.1
40 TraesCS4A01G207700 chr6A 92.308 52 2 1 3555 3606 562803134 562803085 1.210000e-08 73.1
41 TraesCS4A01G207700 chr7A 83.892 627 84 4 3603 4228 2235861 2235251 4.540000e-162 582.0
42 TraesCS4A01G207700 chr7D 93.865 163 10 0 1 163 105264138 105264300 6.760000e-61 246.0
43 TraesCS4A01G207700 chr7D 92.308 52 2 1 3555 3606 329729407 329729456 1.210000e-08 73.1
44 TraesCS4A01G207700 chr7D 92.308 52 2 1 3555 3606 604526386 604526337 1.210000e-08 73.1
45 TraesCS4A01G207700 chr3B 93.865 163 10 0 1 163 475275625 475275787 6.760000e-61 246.0
46 TraesCS4A01G207700 chr3B 88.690 168 15 1 3603 3770 355371150 355371313 1.480000e-47 202.0
47 TraesCS4A01G207700 chr5D 93.827 162 10 0 1 162 386058672 386058511 2.430000e-60 244.0
48 TraesCS4A01G207700 chr5D 92.638 163 10 2 1 163 449340218 449340378 5.260000e-57 233.0
49 TraesCS4A01G207700 chr5B 93.252 163 11 0 1 163 654933244 654933082 3.150000e-59 241.0
50 TraesCS4A01G207700 chr3D 90.566 159 15 0 1 159 511246121 511246279 2.470000e-50 211.0
51 TraesCS4A01G207700 chr3A 92.453 53 2 1 3554 3606 439275269 439275219 3.380000e-09 75.0
52 TraesCS4A01G207700 chr1D 92.308 52 2 1 3555 3606 100452560 100452511 1.210000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G207700 chr4A 500904280 500913000 8720 True 2651.633333 14526 100.000000 1 8721 6 chr4A.!!$R2 8720
1 TraesCS4A01G207700 chr4A 238415958 238416563 605 False 640.000000 640 85.714000 3603 4229 1 chr4A.!!$F1 626
2 TraesCS4A01G207700 chr4A 92489380 92489984 604 True 616.000000 616 85.032000 3603 4228 1 chr4A.!!$R1 625
3 TraesCS4A01G207700 chr4D 88125291 88133687 8396 True 2116.833333 6586 94.199833 163 8721 6 chr4D.!!$R3 8558
4 TraesCS4A01G207700 chr4D 27369181 27369796 615 True 645.000000 645 85.578000 3603 4231 1 chr4D.!!$R1 628
5 TraesCS4A01G207700 chr4B 124745048 124753949 8901 True 1672.857143 5424 94.047714 188 8721 7 chr4B.!!$R2 8533
6 TraesCS4A01G207700 chr5A 363885199 363885802 603 False 671.000000 671 86.624000 3603 4228 1 chr5A.!!$F1 625
7 TraesCS4A01G207700 chr5A 589924655 589925261 606 True 616.000000 616 84.945000 3603 4231 1 chr5A.!!$R2 628
8 TraesCS4A01G207700 chr7B 184876122 184876723 601 True 664.000000 664 86.465000 3603 4228 1 chr7B.!!$R1 625
9 TraesCS4A01G207700 chr2B 226019474 226020078 604 False 662.000000 662 86.328000 3603 4229 1 chr2B.!!$F1 626
10 TraesCS4A01G207700 chr2A 408795997 408796601 604 True 662.000000 662 86.328000 3603 4229 1 chr2A.!!$R1 626
11 TraesCS4A01G207700 chr2A 488457479 488458082 603 True 549.000000 549 83.121000 3603 4228 1 chr2A.!!$R2 625
12 TraesCS4A01G207700 chr6B 236159464 236160075 611 True 656.000000 656 86.006000 3603 4234 1 chr6B.!!$R1 631
13 TraesCS4A01G207700 chr6A 151445250 151445853 603 False 654.000000 654 86.146000 3603 4228 1 chr6A.!!$F1 625
14 TraesCS4A01G207700 chr6A 377421509 377422095 586 False 501.000000 501 82.194000 3603 4229 1 chr6A.!!$F2 626
15 TraesCS4A01G207700 chr7A 2235251 2235861 610 True 582.000000 582 83.892000 3603 4228 1 chr7A.!!$R1 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
133 134 0.036765 TTACCCGATGCCAGTGACAC 60.037 55.000 0.00 0.00 0.00 3.67 F
878 916 0.112801 AGGGTATCCGGGCTCTCTAC 59.887 60.000 0.00 0.00 38.33 2.59 F
1074 1112 1.014564 CACTTCGCGAGTTCCCCTTC 61.015 60.000 9.59 0.00 36.10 3.46 F
2129 2169 1.265095 CATGGGAATGATAGCGTGTGC 59.735 52.381 0.00 0.00 43.24 4.57 F
3766 4000 0.036388 ACATGTTGGTACCAGAGCCG 60.036 55.000 15.65 6.77 0.00 5.52 F
3767 4001 0.249120 CATGTTGGTACCAGAGCCGA 59.751 55.000 15.65 0.00 0.00 5.54 F
3768 4002 0.249398 ATGTTGGTACCAGAGCCGAC 59.751 55.000 15.65 9.90 39.14 4.79 F
4169 4406 0.321671 AGTGTTGATCTGTGGGTCCG 59.678 55.000 0.00 0.00 0.00 4.79 F
5587 6738 0.712380 ATCAAGGGCCATTGGGAAGT 59.288 50.000 28.51 8.42 35.59 3.01 F
6525 7676 0.319040 CATCGATAGCTGGTGGTCCG 60.319 60.000 0.00 0.00 36.30 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1622 1661 1.471287 CACTGCACCATGACCATCAAG 59.529 52.381 0.00 0.00 0.00 3.02 R
2135 2175 0.036294 GAGGCCTGTGTCAAGTACCC 60.036 60.000 12.00 0.00 0.00 3.69 R
2162 2203 0.249447 CATCAGCCATGGCAATGCTG 60.249 55.000 37.18 25.62 44.88 4.41 R
4024 4261 0.177141 TTCTTTCCGTATGGGCTCCG 59.823 55.000 0.00 0.00 35.24 4.63 R
4921 6072 1.198637 GCTGAGTGACCAATCTGCAAC 59.801 52.381 19.28 0.00 45.38 4.17 R
5186 6337 3.181450 ACAGACAACCTCTTTCCTCTTGG 60.181 47.826 0.00 0.00 0.00 3.61 R
5416 6567 6.530019 AAAGTCATTACCTTATTGGCCAAG 57.470 37.500 24.94 12.63 40.22 3.61 R
5967 7118 0.321475 TGCCATCATGTGCTTCGTCA 60.321 50.000 0.00 0.00 0.00 4.35 R
6990 8141 0.458669 GGCCAACAGCTGATGAATGG 59.541 55.000 24.19 19.91 43.05 3.16 R
8510 9987 1.001597 GATTAAGCAGATGCAGCCAGC 60.002 52.381 8.77 8.77 45.16 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.100981 GCTAGACTGCCTCGCTTG 57.899 61.111 0.00 0.00 31.50 4.01
20 21 1.216710 GCTAGACTGCCTCGCTTGT 59.783 57.895 0.00 0.00 31.50 3.16
21 22 1.080995 GCTAGACTGCCTCGCTTGTG 61.081 60.000 0.00 0.00 31.50 3.33
22 23 0.244994 CTAGACTGCCTCGCTTGTGT 59.755 55.000 0.00 0.00 0.00 3.72
23 24 0.679505 TAGACTGCCTCGCTTGTGTT 59.320 50.000 0.00 0.00 0.00 3.32
24 25 0.179045 AGACTGCCTCGCTTGTGTTT 60.179 50.000 0.00 0.00 0.00 2.83
25 26 0.040958 GACTGCCTCGCTTGTGTTTG 60.041 55.000 0.00 0.00 0.00 2.93
26 27 0.748005 ACTGCCTCGCTTGTGTTTGT 60.748 50.000 0.00 0.00 0.00 2.83
27 28 0.040958 CTGCCTCGCTTGTGTTTGTC 60.041 55.000 0.00 0.00 0.00 3.18
28 29 0.746204 TGCCTCGCTTGTGTTTGTCA 60.746 50.000 0.00 0.00 0.00 3.58
29 30 0.040958 GCCTCGCTTGTGTTTGTCAG 60.041 55.000 0.00 0.00 0.00 3.51
30 31 1.299541 CCTCGCTTGTGTTTGTCAGT 58.700 50.000 0.00 0.00 0.00 3.41
31 32 1.261619 CCTCGCTTGTGTTTGTCAGTC 59.738 52.381 0.00 0.00 0.00 3.51
32 33 0.927537 TCGCTTGTGTTTGTCAGTCG 59.072 50.000 0.00 0.00 0.00 4.18
33 34 0.654472 CGCTTGTGTTTGTCAGTCGC 60.654 55.000 0.00 0.00 0.00 5.19
34 35 0.657840 GCTTGTGTTTGTCAGTCGCT 59.342 50.000 0.00 0.00 0.00 4.93
35 36 1.595489 GCTTGTGTTTGTCAGTCGCTG 60.595 52.381 1.02 1.02 0.00 5.18
36 37 1.003545 CTTGTGTTTGTCAGTCGCTGG 60.004 52.381 6.95 0.00 31.51 4.85
37 38 0.813610 TGTGTTTGTCAGTCGCTGGG 60.814 55.000 6.95 0.00 31.51 4.45
38 39 1.891919 TGTTTGTCAGTCGCTGGGC 60.892 57.895 6.95 2.56 31.51 5.36
39 40 1.598130 GTTTGTCAGTCGCTGGGCT 60.598 57.895 6.95 0.00 31.51 5.19
40 41 1.597854 TTTGTCAGTCGCTGGGCTG 60.598 57.895 6.95 8.94 31.51 4.85
41 42 2.038814 TTTGTCAGTCGCTGGGCTGA 62.039 55.000 12.34 12.34 39.17 4.26
43 44 3.695606 TCAGTCGCTGGGCTGACC 61.696 66.667 12.34 0.00 36.89 4.02
46 47 4.148825 GTCGCTGGGCTGACCGAT 62.149 66.667 0.00 0.00 44.64 4.18
47 48 4.147449 TCGCTGGGCTGACCGATG 62.147 66.667 0.00 0.00 44.64 3.84
48 49 4.457496 CGCTGGGCTGACCGATGT 62.457 66.667 0.00 0.00 44.64 3.06
49 50 2.512515 GCTGGGCTGACCGATGTC 60.513 66.667 0.00 0.00 44.64 3.06
50 51 2.187946 CTGGGCTGACCGATGTCC 59.812 66.667 0.00 0.00 44.64 4.02
51 52 2.606213 TGGGCTGACCGATGTCCA 60.606 61.111 0.00 0.00 44.64 4.02
52 53 2.187946 GGGCTGACCGATGTCCAG 59.812 66.667 0.00 0.00 41.01 3.86
53 54 2.359169 GGGCTGACCGATGTCCAGA 61.359 63.158 0.00 0.00 41.01 3.86
54 55 1.690219 GGGCTGACCGATGTCCAGAT 61.690 60.000 0.00 0.00 41.01 2.90
55 56 0.249657 GGCTGACCGATGTCCAGATC 60.250 60.000 0.00 0.00 41.01 2.75
56 57 0.249657 GCTGACCGATGTCCAGATCC 60.250 60.000 0.00 0.00 41.01 3.36
57 58 1.114627 CTGACCGATGTCCAGATCCA 58.885 55.000 0.00 0.00 41.01 3.41
58 59 1.482182 CTGACCGATGTCCAGATCCAA 59.518 52.381 0.00 0.00 41.01 3.53
59 60 1.905894 TGACCGATGTCCAGATCCAAA 59.094 47.619 0.00 0.00 41.01 3.28
60 61 2.304470 TGACCGATGTCCAGATCCAAAA 59.696 45.455 0.00 0.00 41.01 2.44
61 62 2.939103 GACCGATGTCCAGATCCAAAAG 59.061 50.000 0.00 0.00 35.34 2.27
62 63 2.305927 ACCGATGTCCAGATCCAAAAGT 59.694 45.455 0.00 0.00 0.00 2.66
63 64 3.244911 ACCGATGTCCAGATCCAAAAGTT 60.245 43.478 0.00 0.00 0.00 2.66
64 65 4.019681 ACCGATGTCCAGATCCAAAAGTTA 60.020 41.667 0.00 0.00 0.00 2.24
65 66 4.332819 CCGATGTCCAGATCCAAAAGTTAC 59.667 45.833 0.00 0.00 0.00 2.50
66 67 4.332819 CGATGTCCAGATCCAAAAGTTACC 59.667 45.833 0.00 0.00 0.00 2.85
67 68 3.670625 TGTCCAGATCCAAAAGTTACCG 58.329 45.455 0.00 0.00 0.00 4.02
68 69 3.007635 GTCCAGATCCAAAAGTTACCGG 58.992 50.000 0.00 0.00 0.00 5.28
69 70 2.640826 TCCAGATCCAAAAGTTACCGGT 59.359 45.455 13.98 13.98 0.00 5.28
70 71 2.747446 CCAGATCCAAAAGTTACCGGTG 59.253 50.000 19.93 0.00 0.00 4.94
71 72 3.408634 CAGATCCAAAAGTTACCGGTGT 58.591 45.455 19.93 0.00 0.00 4.16
72 73 3.435671 CAGATCCAAAAGTTACCGGTGTC 59.564 47.826 19.93 10.17 0.00 3.67
73 74 2.259266 TCCAAAAGTTACCGGTGTCC 57.741 50.000 19.93 4.43 0.00 4.02
74 75 1.489649 TCCAAAAGTTACCGGTGTCCA 59.510 47.619 19.93 0.00 0.00 4.02
75 76 1.877443 CCAAAAGTTACCGGTGTCCAG 59.123 52.381 19.93 0.60 0.00 3.86
76 77 1.265905 CAAAAGTTACCGGTGTCCAGC 59.734 52.381 19.93 0.00 0.00 4.85
77 78 0.250597 AAAGTTACCGGTGTCCAGCC 60.251 55.000 19.93 0.00 0.00 4.85
78 79 2.046604 GTTACCGGTGTCCAGCCC 60.047 66.667 19.93 0.00 0.00 5.19
79 80 2.527123 TTACCGGTGTCCAGCCCA 60.527 61.111 19.93 0.00 0.00 5.36
80 81 2.148052 TTACCGGTGTCCAGCCCAA 61.148 57.895 19.93 0.00 0.00 4.12
81 82 1.706995 TTACCGGTGTCCAGCCCAAA 61.707 55.000 19.93 0.00 0.00 3.28
82 83 1.706995 TACCGGTGTCCAGCCCAAAA 61.707 55.000 19.93 0.00 0.00 2.44
83 84 1.830408 CCGGTGTCCAGCCCAAAAA 60.830 57.895 0.00 0.00 0.00 1.94
84 85 1.184970 CCGGTGTCCAGCCCAAAAAT 61.185 55.000 0.00 0.00 0.00 1.82
85 86 0.243636 CGGTGTCCAGCCCAAAAATC 59.756 55.000 0.00 0.00 0.00 2.17
86 87 1.632589 GGTGTCCAGCCCAAAAATCT 58.367 50.000 0.00 0.00 0.00 2.40
87 88 1.273327 GGTGTCCAGCCCAAAAATCTG 59.727 52.381 0.00 0.00 0.00 2.90
88 89 1.273327 GTGTCCAGCCCAAAAATCTGG 59.727 52.381 1.29 1.29 46.60 3.86
101 102 9.710900 GCCCAAAAATCTGGAATTTATATAAGG 57.289 33.333 0.00 0.00 38.96 2.69
123 124 7.951530 AGGTAAATACGTATTTTACCCGATG 57.048 36.000 32.09 0.00 37.16 3.84
124 125 6.424812 AGGTAAATACGTATTTTACCCGATGC 59.575 38.462 32.09 13.55 37.16 3.91
125 126 5.678132 AAATACGTATTTTACCCGATGCC 57.322 39.130 24.43 0.00 32.28 4.40
126 127 2.695127 ACGTATTTTACCCGATGCCA 57.305 45.000 0.00 0.00 0.00 4.92
127 128 2.557317 ACGTATTTTACCCGATGCCAG 58.443 47.619 0.00 0.00 0.00 4.85
128 129 2.093341 ACGTATTTTACCCGATGCCAGT 60.093 45.455 0.00 0.00 0.00 4.00
129 130 2.286833 CGTATTTTACCCGATGCCAGTG 59.713 50.000 0.00 0.00 0.00 3.66
130 131 2.799126 ATTTTACCCGATGCCAGTGA 57.201 45.000 0.00 0.00 0.00 3.41
131 132 1.816074 TTTTACCCGATGCCAGTGAC 58.184 50.000 0.00 0.00 0.00 3.67
132 133 0.687920 TTTACCCGATGCCAGTGACA 59.312 50.000 0.00 0.00 0.00 3.58
133 134 0.036765 TTACCCGATGCCAGTGACAC 60.037 55.000 0.00 0.00 0.00 3.67
134 135 1.895020 TACCCGATGCCAGTGACACC 61.895 60.000 0.84 0.00 0.00 4.16
135 136 2.815211 CCGATGCCAGTGACACCG 60.815 66.667 0.84 0.00 0.00 4.94
136 137 2.815211 CGATGCCAGTGACACCGG 60.815 66.667 0.00 0.00 0.00 5.28
137 138 2.347490 GATGCCAGTGACACCGGT 59.653 61.111 0.00 0.00 0.00 5.28
138 139 2.032528 ATGCCAGTGACACCGGTG 59.967 61.111 32.83 32.83 0.00 4.94
148 149 2.051941 ACACCGGTGTCCATAACGT 58.948 52.632 34.41 8.72 40.24 3.99
149 150 0.320073 ACACCGGTGTCCATAACGTG 60.320 55.000 34.41 6.57 40.24 4.49
150 151 1.375013 ACCGGTGTCCATAACGTGC 60.375 57.895 6.12 0.00 0.00 5.34
151 152 2.104253 CCGGTGTCCATAACGTGCC 61.104 63.158 0.00 0.00 0.00 5.01
152 153 1.079405 CGGTGTCCATAACGTGCCT 60.079 57.895 0.00 0.00 0.00 4.75
153 154 1.082117 CGGTGTCCATAACGTGCCTC 61.082 60.000 0.00 0.00 0.00 4.70
154 155 0.743345 GGTGTCCATAACGTGCCTCC 60.743 60.000 0.00 0.00 0.00 4.30
155 156 1.082117 GTGTCCATAACGTGCCTCCG 61.082 60.000 0.00 0.00 0.00 4.63
156 157 2.171725 GTCCATAACGTGCCTCCGC 61.172 63.158 0.00 0.00 0.00 5.54
157 158 2.895372 CCATAACGTGCCTCCGCC 60.895 66.667 0.00 0.00 0.00 6.13
158 159 2.895372 CATAACGTGCCTCCGCCC 60.895 66.667 0.00 0.00 0.00 6.13
159 160 4.171103 ATAACGTGCCTCCGCCCC 62.171 66.667 0.00 0.00 0.00 5.80
199 200 7.200434 AGTCACTTGATATCACCAATACCTT 57.800 36.000 4.48 0.00 0.00 3.50
206 207 7.984422 TGATATCACCAATACCTTGCTAATG 57.016 36.000 0.00 0.00 0.00 1.90
244 245 7.118680 GGTCGTATTTGAGAGTTTATGAAACCA 59.881 37.037 0.00 0.00 42.34 3.67
308 309 9.687210 CATCTGAAATTTTCTCAACTGATTCAA 57.313 29.630 10.33 0.00 0.00 2.69
418 453 1.940613 CTTTTGTAGCTGGGCCGTATC 59.059 52.381 0.00 0.00 0.00 2.24
878 916 0.112801 AGGGTATCCGGGCTCTCTAC 59.887 60.000 0.00 0.00 38.33 2.59
885 923 4.228567 GGGCTCTCTACCTGCGGC 62.229 72.222 0.00 0.00 0.00 6.53
935 973 2.036731 TCACCCACGATCCGACCT 59.963 61.111 0.00 0.00 0.00 3.85
1074 1112 1.014564 CACTTCGCGAGTTCCCCTTC 61.015 60.000 9.59 0.00 36.10 3.46
1111 1149 2.774439 TTTTGGCTTGCTCGTTCTTC 57.226 45.000 0.00 0.00 0.00 2.87
1147 1185 7.231607 TCGAAAAGTATCAGTGCGTAATTTTC 58.768 34.615 19.70 19.70 39.54 2.29
1148 1186 6.464834 CGAAAAGTATCAGTGCGTAATTTTCC 59.535 38.462 21.61 12.43 39.66 3.13
1175 1213 1.300233 GCGCACGAGGATTCCTAGG 60.300 63.158 16.12 0.82 31.76 3.02
1272 1310 7.789273 TCTTAAAACGAGTGGTAAAACATGA 57.211 32.000 0.00 0.00 0.00 3.07
1285 1323 6.661377 TGGTAAAACATGAGGCTGCTTTATTA 59.339 34.615 0.00 0.00 0.00 0.98
1296 1334 8.840321 TGAGGCTGCTTTATTATTAACTCAATC 58.160 33.333 0.00 0.00 0.00 2.67
1324 1362 2.159382 GAATTGAGGAAAACTGCCCGA 58.841 47.619 0.00 0.00 0.00 5.14
1423 1462 1.799403 GGAGATGAGATTGCAGATGCG 59.201 52.381 0.00 0.00 45.83 4.73
1622 1661 3.964411 ACTTGCCCTGTTTCCCTATAAC 58.036 45.455 0.00 0.00 0.00 1.89
1694 1733 5.004726 GGCAACTCGAATGTTTAATGAATGC 59.995 40.000 0.00 0.00 0.00 3.56
1753 1792 2.079158 CACTGTACCTGCATTGTGGAG 58.921 52.381 0.00 0.00 35.43 3.86
1797 1836 6.928820 TGTCATACGAATAACGCACTTTATG 58.071 36.000 0.00 0.00 46.94 1.90
1801 1840 8.484799 TCATACGAATAACGCACTTTATGAATC 58.515 33.333 0.00 0.00 46.94 2.52
1805 1844 3.389687 AACGCACTTTATGAATCGCAG 57.610 42.857 0.00 0.00 0.00 5.18
1842 1881 7.395190 TGTCGTATTAAGTTAGTAGGCAAGA 57.605 36.000 1.42 0.00 0.00 3.02
1872 1911 6.594159 ACTTACATGTATGCACACTAGGTTTC 59.406 38.462 16.47 0.00 37.54 2.78
1906 1945 7.615403 TGTATTTCTATATGCATCTCACCCTC 58.385 38.462 0.19 0.00 0.00 4.30
1907 1946 6.692849 ATTTCTATATGCATCTCACCCTCA 57.307 37.500 0.19 0.00 0.00 3.86
1908 1947 5.474578 TTCTATATGCATCTCACCCTCAC 57.525 43.478 0.19 0.00 0.00 3.51
1912 1951 2.988010 TGCATCTCACCCTCACATAC 57.012 50.000 0.00 0.00 0.00 2.39
2003 2042 4.043310 TGACATCCATCTCACCCTTTCTTT 59.957 41.667 0.00 0.00 0.00 2.52
2107 2147 3.723097 ATCTCTCGGGCTCCTGCGA 62.723 63.158 0.00 0.00 40.82 5.10
2129 2169 1.265095 CATGGGAATGATAGCGTGTGC 59.735 52.381 0.00 0.00 43.24 4.57
2151 2192 3.490419 CGTATAGGGTACTTGACACAGGC 60.490 52.174 0.00 0.00 31.73 4.85
2177 2218 2.056223 GTCCAGCATTGCCATGGCT 61.056 57.895 35.53 15.87 42.51 4.75
2183 2331 0.249322 GCATTGCCATGGCTGATGTC 60.249 55.000 34.02 26.99 42.51 3.06
2248 2396 0.179048 CACCTGAATAGCATCCGCCA 60.179 55.000 0.00 0.00 39.83 5.69
2276 2424 1.525077 GGGTGCCGAAGTTGTGACA 60.525 57.895 0.00 0.00 0.00 3.58
2294 2442 5.414765 TGTGACAGTCGTAGTTCATAGTGAT 59.585 40.000 0.00 0.00 0.00 3.06
2295 2443 6.072119 TGTGACAGTCGTAGTTCATAGTGATT 60.072 38.462 0.00 0.00 0.00 2.57
2296 2444 6.807230 GTGACAGTCGTAGTTCATAGTGATTT 59.193 38.462 0.00 0.00 0.00 2.17
2298 2446 7.328493 TGACAGTCGTAGTTCATAGTGATTTTG 59.672 37.037 0.00 0.00 0.00 2.44
2426 2574 9.845740 TTTTTCCGATTTCTTATGATGGATAGA 57.154 29.630 0.00 0.00 0.00 1.98
2510 2658 2.677524 GCCTTGCAGCATGGGTGA 60.678 61.111 24.96 0.00 35.86 4.02
2556 2704 3.817647 GGAGGCATTGACCATAGATGAAC 59.182 47.826 0.00 0.00 0.00 3.18
2581 2729 5.519808 AGAGGGTTTTGAAGAAAGAAGGTT 58.480 37.500 0.00 0.00 0.00 3.50
2657 2805 6.867293 AGAGAGTTCGAACCTAACAAACATAC 59.133 38.462 24.22 5.87 0.00 2.39
2680 2828 5.307456 ACATGATGCAATCTACATCTCCTCT 59.693 40.000 0.00 0.00 45.81 3.69
2798 2946 3.390135 TGTGCTGTAACTAGACTGTTGC 58.610 45.455 0.00 0.00 34.03 4.17
3089 3239 4.104383 TCCAGCAAGGAAGATTGTCTTT 57.896 40.909 0.00 0.00 45.65 2.52
3263 3413 0.763652 AGGGCCTGATCATACTGCTG 59.236 55.000 4.50 0.00 0.00 4.41
3402 3561 2.489722 GGTTTTCCCTGAGTGCATCTTC 59.510 50.000 0.00 0.00 0.00 2.87
3481 3640 1.478916 GGCCTTAGAGTCAGTCACCTC 59.521 57.143 0.00 0.00 0.00 3.85
3484 3643 3.426615 CCTTAGAGTCAGTCACCTCACT 58.573 50.000 0.00 0.00 0.00 3.41
3485 3644 3.192422 CCTTAGAGTCAGTCACCTCACTG 59.808 52.174 0.00 0.00 44.61 3.66
3486 3645 2.373335 AGAGTCAGTCACCTCACTGT 57.627 50.000 0.74 0.00 43.80 3.55
3487 3646 1.959985 AGAGTCAGTCACCTCACTGTG 59.040 52.381 0.17 0.17 43.80 3.66
3488 3647 1.957177 GAGTCAGTCACCTCACTGTGA 59.043 52.381 10.50 10.50 43.80 3.58
3489 3648 2.560542 GAGTCAGTCACCTCACTGTGAT 59.439 50.000 11.45 0.00 46.20 3.06
3490 3649 3.759086 GAGTCAGTCACCTCACTGTGATA 59.241 47.826 11.45 0.00 46.20 2.15
3491 3650 3.761218 AGTCAGTCACCTCACTGTGATAG 59.239 47.826 11.45 8.55 46.20 2.08
3492 3651 2.493675 TCAGTCACCTCACTGTGATAGC 59.506 50.000 11.45 1.04 46.20 2.97
3493 3652 1.827969 AGTCACCTCACTGTGATAGCC 59.172 52.381 11.45 0.00 46.20 3.93
3494 3653 1.827969 GTCACCTCACTGTGATAGCCT 59.172 52.381 11.45 0.00 46.20 4.58
3495 3654 1.827344 TCACCTCACTGTGATAGCCTG 59.173 52.381 11.45 0.00 40.22 4.85
3496 3655 1.827344 CACCTCACTGTGATAGCCTGA 59.173 52.381 11.45 0.00 38.55 3.86
3497 3656 1.827969 ACCTCACTGTGATAGCCTGAC 59.172 52.381 11.45 0.00 0.00 3.51
3498 3657 2.106566 CCTCACTGTGATAGCCTGACT 58.893 52.381 11.45 0.00 0.00 3.41
3499 3658 2.499289 CCTCACTGTGATAGCCTGACTT 59.501 50.000 11.45 0.00 0.00 3.01
3500 3659 3.701542 CCTCACTGTGATAGCCTGACTTA 59.298 47.826 11.45 0.00 0.00 2.24
3501 3660 4.160439 CCTCACTGTGATAGCCTGACTTAA 59.840 45.833 11.45 0.00 0.00 1.85
3502 3661 5.163364 CCTCACTGTGATAGCCTGACTTAAT 60.163 44.000 11.45 0.00 0.00 1.40
3503 3662 6.040955 CCTCACTGTGATAGCCTGACTTAATA 59.959 42.308 11.45 0.00 0.00 0.98
3504 3663 6.806751 TCACTGTGATAGCCTGACTTAATAC 58.193 40.000 6.36 0.00 0.00 1.89
3505 3664 5.687730 CACTGTGATAGCCTGACTTAATACG 59.312 44.000 0.32 0.00 0.00 3.06
3506 3665 5.360144 ACTGTGATAGCCTGACTTAATACGT 59.640 40.000 0.00 0.00 0.00 3.57
3507 3666 5.828747 TGTGATAGCCTGACTTAATACGTC 58.171 41.667 0.00 0.00 0.00 4.34
3508 3667 5.358725 TGTGATAGCCTGACTTAATACGTCA 59.641 40.000 0.00 0.00 38.94 4.35
3516 3675 5.306532 TGACTTAATACGTCAGTCACCTC 57.693 43.478 13.08 0.00 41.60 3.85
3517 3676 4.763279 TGACTTAATACGTCAGTCACCTCA 59.237 41.667 13.08 0.00 41.60 3.86
3518 3677 5.056894 ACTTAATACGTCAGTCACCTCAC 57.943 43.478 0.00 0.00 0.00 3.51
3519 3678 4.765856 ACTTAATACGTCAGTCACCTCACT 59.234 41.667 0.00 0.00 0.00 3.41
3520 3679 3.577649 AATACGTCAGTCACCTCACTG 57.422 47.619 0.00 0.00 44.61 3.66
3521 3680 1.977056 TACGTCAGTCACCTCACTGT 58.023 50.000 0.00 0.00 43.80 3.55
3522 3681 0.385751 ACGTCAGTCACCTCACTGTG 59.614 55.000 0.17 0.17 43.80 3.66
3523 3682 0.668535 CGTCAGTCACCTCACTGTGA 59.331 55.000 10.50 10.50 43.80 3.58
3524 3683 1.270826 CGTCAGTCACCTCACTGTGAT 59.729 52.381 11.45 0.00 46.20 3.06
3525 3684 2.488153 CGTCAGTCACCTCACTGTGATA 59.512 50.000 11.45 0.00 46.20 2.15
3526 3685 3.426829 CGTCAGTCACCTCACTGTGATAG 60.427 52.174 11.45 8.55 46.20 2.08
3527 3686 2.493675 TCAGTCACCTCACTGTGATAGC 59.506 50.000 11.45 1.04 46.20 2.97
3528 3687 1.827969 AGTCACCTCACTGTGATAGCC 59.172 52.381 11.45 0.00 46.20 3.93
3529 3688 1.827969 GTCACCTCACTGTGATAGCCT 59.172 52.381 11.45 0.00 46.20 4.58
3530 3689 1.827344 TCACCTCACTGTGATAGCCTG 59.173 52.381 11.45 0.00 40.22 4.85
3531 3690 1.827344 CACCTCACTGTGATAGCCTGA 59.173 52.381 11.45 0.00 38.55 3.86
3532 3691 1.827969 ACCTCACTGTGATAGCCTGAC 59.172 52.381 11.45 0.00 0.00 3.51
3533 3692 2.106566 CCTCACTGTGATAGCCTGACT 58.893 52.381 11.45 0.00 0.00 3.41
3534 3693 2.499289 CCTCACTGTGATAGCCTGACTT 59.501 50.000 11.45 0.00 0.00 3.01
3535 3694 3.701542 CCTCACTGTGATAGCCTGACTTA 59.298 47.826 11.45 0.00 0.00 2.24
3536 3695 4.160439 CCTCACTGTGATAGCCTGACTTAA 59.840 45.833 11.45 0.00 0.00 1.85
3537 3696 5.163364 CCTCACTGTGATAGCCTGACTTAAT 60.163 44.000 11.45 0.00 0.00 1.40
3538 3697 6.040955 CCTCACTGTGATAGCCTGACTTAATA 59.959 42.308 11.45 0.00 0.00 0.98
3539 3698 6.806751 TCACTGTGATAGCCTGACTTAATAC 58.193 40.000 6.36 0.00 0.00 1.89
3540 3699 5.687730 CACTGTGATAGCCTGACTTAATACG 59.312 44.000 0.32 0.00 0.00 3.06
3541 3700 5.360144 ACTGTGATAGCCTGACTTAATACGT 59.640 40.000 0.00 0.00 0.00 3.57
3542 3701 5.828747 TGTGATAGCCTGACTTAATACGTC 58.171 41.667 0.00 0.00 0.00 4.34
3543 3702 5.358725 TGTGATAGCCTGACTTAATACGTCA 59.641 40.000 0.00 0.00 38.94 4.35
3551 3710 5.306532 TGACTTAATACGTCAGTCACCTC 57.693 43.478 13.08 0.00 41.60 3.85
3552 3711 4.763279 TGACTTAATACGTCAGTCACCTCA 59.237 41.667 13.08 0.00 41.60 3.86
3553 3712 5.056894 ACTTAATACGTCAGTCACCTCAC 57.943 43.478 0.00 0.00 0.00 3.51
3564 3723 1.827969 GTCACCTCACTGTGATAGCCT 59.172 52.381 11.45 0.00 46.20 4.58
3566 3725 1.827344 CACCTCACTGTGATAGCCTGA 59.173 52.381 11.45 0.00 38.55 3.86
3583 3742 9.153479 GATAGCCTGACTTAATAGGGATGATAT 57.847 37.037 0.00 0.00 34.58 1.63
3612 3845 6.831664 ACTCATAGAAATAAGGATGGGTGT 57.168 37.500 0.00 0.00 0.00 4.16
3693 3927 1.133181 TGTTGATCTGTGGGGCCAGA 61.133 55.000 4.39 0.00 45.06 3.86
3750 3984 0.322187 GTGTGTCCGGGGCTTTACAT 60.322 55.000 0.00 0.00 0.00 2.29
3754 3988 0.808755 GTCCGGGGCTTTACATGTTG 59.191 55.000 2.30 0.00 0.00 3.33
3756 3990 0.610785 CCGGGGCTTTACATGTTGGT 60.611 55.000 2.30 0.00 0.00 3.67
3757 3991 1.340211 CCGGGGCTTTACATGTTGGTA 60.340 52.381 2.30 0.00 0.00 3.25
3758 3992 1.741145 CGGGGCTTTACATGTTGGTAC 59.259 52.381 2.30 0.00 0.00 3.34
3759 3993 2.097036 GGGGCTTTACATGTTGGTACC 58.903 52.381 2.30 4.43 0.00 3.34
3760 3994 2.555670 GGGGCTTTACATGTTGGTACCA 60.556 50.000 11.60 11.60 0.00 3.25
3761 3995 2.752903 GGGCTTTACATGTTGGTACCAG 59.247 50.000 15.65 5.98 0.00 4.00
3762 3996 3.560453 GGGCTTTACATGTTGGTACCAGA 60.560 47.826 15.65 6.42 0.00 3.86
3763 3997 3.689649 GGCTTTACATGTTGGTACCAGAG 59.310 47.826 15.65 8.85 0.00 3.35
3764 3998 3.127030 GCTTTACATGTTGGTACCAGAGC 59.873 47.826 15.65 10.15 0.00 4.09
3765 3999 3.343941 TTACATGTTGGTACCAGAGCC 57.656 47.619 15.65 5.42 0.00 4.70
3766 4000 0.036388 ACATGTTGGTACCAGAGCCG 60.036 55.000 15.65 6.77 0.00 5.52
3767 4001 0.249120 CATGTTGGTACCAGAGCCGA 59.751 55.000 15.65 0.00 0.00 5.54
3768 4002 0.249398 ATGTTGGTACCAGAGCCGAC 59.751 55.000 15.65 9.90 39.14 4.79
3769 4003 1.079336 GTTGGTACCAGAGCCGACC 60.079 63.158 15.65 0.00 33.97 4.79
3770 4004 2.288025 TTGGTACCAGAGCCGACCC 61.288 63.158 15.65 0.00 0.00 4.46
3773 4007 1.390383 GGTACCAGAGCCGACCCTAC 61.390 65.000 7.15 0.00 0.00 3.18
3846 4080 3.095102 TGTTGTGCATGACATTTGTGG 57.905 42.857 0.00 0.00 33.40 4.17
3888 4123 0.902984 TACATGTGCCGGACTGGACT 60.903 55.000 5.05 0.00 42.00 3.85
3916 4153 2.715536 GTGCCAAGAGGGAACGTTT 58.284 52.632 0.46 0.00 34.74 3.60
3963 4200 2.618045 CCTTTGAGTGGGGGTGTATGTC 60.618 54.545 0.00 0.00 0.00 3.06
3967 4204 3.664320 TGAGTGGGGGTGTATGTCATAT 58.336 45.455 0.00 0.00 0.00 1.78
3974 4211 2.290323 GGGTGTATGTCATATCCTGGCC 60.290 54.545 0.00 0.00 0.00 5.36
3980 4217 7.147479 GGTGTATGTCATATCCTGGCCTAATAT 60.147 40.741 3.32 1.71 0.00 1.28
4034 4271 1.211949 CTTCTTTTCCCGGAGCCCATA 59.788 52.381 0.73 0.00 0.00 2.74
4166 4403 3.511477 AGACTAGTGTTGATCTGTGGGT 58.489 45.455 0.00 0.00 0.00 4.51
4169 4406 0.321671 AGTGTTGATCTGTGGGTCCG 59.678 55.000 0.00 0.00 0.00 4.79
4196 4433 3.771160 CCGCCAGGAGTAACGGCT 61.771 66.667 0.00 0.00 43.95 5.52
4315 4552 5.105473 CCATGGTCAGCTCAAATGATTTTCT 60.105 40.000 2.57 0.00 0.00 2.52
4360 4598 8.688747 ATGTCAAGATTTAGATCCAGAAATCC 57.311 34.615 16.18 6.88 41.15 3.01
4478 4716 3.365220 CACGATTCCTCTCTTCGTTGAAC 59.635 47.826 0.00 0.00 42.99 3.18
4481 4719 4.447724 CGATTCCTCTCTTCGTTGAACAAA 59.552 41.667 0.00 0.00 0.00 2.83
4482 4720 5.050363 CGATTCCTCTCTTCGTTGAACAAAA 60.050 40.000 0.00 0.00 0.00 2.44
4490 4728 8.294341 TCTCTTCGTTGAACAAAACAGTATAG 57.706 34.615 0.00 0.00 0.00 1.31
4493 4731 9.531942 TCTTCGTTGAACAAAACAGTATAGTTA 57.468 29.630 0.00 0.00 0.00 2.24
4634 4884 1.251251 GCTTGCATGTTCCCTGTTCT 58.749 50.000 1.14 0.00 0.00 3.01
4651 4901 8.802267 TCCCTGTTCTAAAACTTATTGGATTTG 58.198 33.333 0.00 0.00 36.30 2.32
4682 4932 4.631813 GTCACCATGAGTCACATACTTTCC 59.368 45.833 0.00 0.00 39.07 3.13
4683 4933 3.941483 CACCATGAGTCACATACTTTCCC 59.059 47.826 0.00 0.00 39.07 3.97
4684 4934 3.198068 CCATGAGTCACATACTTTCCCG 58.802 50.000 0.00 0.00 39.07 5.14
4685 4935 3.198068 CATGAGTCACATACTTTCCCGG 58.802 50.000 0.00 0.00 39.07 5.73
4686 4936 2.531771 TGAGTCACATACTTTCCCGGA 58.468 47.619 0.73 0.00 39.07 5.14
4687 4937 2.232941 TGAGTCACATACTTTCCCGGAC 59.767 50.000 0.73 0.00 39.07 4.79
4697 5122 1.607148 CTTTCCCGGACCTTGTGTTTC 59.393 52.381 0.73 0.00 0.00 2.78
4708 5133 4.642429 ACCTTGTGTTTCTCACTGTATCC 58.358 43.478 0.00 0.00 46.27 2.59
4775 5926 5.597813 ATCAGTAAGAACTTCTTTGCGTG 57.402 39.130 9.33 3.39 37.89 5.34
4921 6072 5.879777 ACCTTTTGAACCTTTGGTGAATTTG 59.120 36.000 0.00 0.00 35.34 2.32
4960 6111 1.940613 GCATACGTTGATTCCCCACTC 59.059 52.381 0.00 0.00 0.00 3.51
4989 6140 2.398588 TGCTTTCCGGGAGTATGAGAT 58.601 47.619 0.00 0.00 0.00 2.75
5047 6198 2.357952 GTGTGGGAAGTTGAACAAGGAC 59.642 50.000 0.00 0.00 0.00 3.85
5146 6297 2.311463 CCTTCTGAATCTAGCCCGAGA 58.689 52.381 0.00 0.00 0.00 4.04
5377 6528 1.672881 CCTTTTGATGGCGATGAGGTC 59.327 52.381 0.00 0.00 0.00 3.85
5416 6567 4.065088 TGACTGCTCAATTCTTGTACCAC 58.935 43.478 0.00 0.00 0.00 4.16
5491 6642 8.964772 AGTTGCTCTTATCTATTTTTCAAGCAT 58.035 29.630 0.00 0.00 37.12 3.79
5587 6738 0.712380 ATCAAGGGCCATTGGGAAGT 59.288 50.000 28.51 8.42 35.59 3.01
5763 6914 1.065491 ACTTCATCCTGTTATGCGGCA 60.065 47.619 4.58 4.58 0.00 5.69
5836 6987 4.778427 CCCCACTAGATATAAAGGTCCCTC 59.222 50.000 0.00 0.00 0.00 4.30
5881 7032 4.636249 AGAAACTAAGAGCAGAACCAGTG 58.364 43.478 0.00 0.00 0.00 3.66
5964 7115 5.221461 CGAAGTTACCTGGCTACCTGATTAT 60.221 44.000 0.00 0.00 0.00 1.28
5967 7118 5.905913 AGTTACCTGGCTACCTGATTATTCT 59.094 40.000 0.00 0.00 0.00 2.40
6022 7173 2.239907 AGTGGCTCTTTCCTATCCAACC 59.760 50.000 0.00 0.00 0.00 3.77
6120 7271 2.949177 TGGAGGCTTTACAGCTTGAA 57.051 45.000 0.07 0.00 46.44 2.69
6186 7337 1.929836 GAGCTTCGTTCTATGGTGCAG 59.070 52.381 0.00 0.00 0.00 4.41
6381 7532 5.551760 AGATTCGTGATTTCATCAACACC 57.448 39.130 0.00 0.00 41.69 4.16
6408 7559 5.240183 CACTTCAGTGGAATCTCACAAACAT 59.760 40.000 0.00 0.00 42.10 2.71
6472 7623 9.358406 TCCAGGACATATTACTTCTAACGATTA 57.642 33.333 0.00 0.00 0.00 1.75
6525 7676 0.319040 CATCGATAGCTGGTGGTCCG 60.319 60.000 0.00 0.00 36.30 4.79
6689 7840 7.302184 AGAAATAAGGACTCTAGTGAGCCTAT 58.698 38.462 10.03 5.55 42.09 2.57
6861 8012 4.051922 GCTTGTCCAGTATGAGATTACGG 58.948 47.826 0.00 0.00 39.69 4.02
6970 8121 7.549134 TGATATTAGCTGTGTTGACGAGATTTT 59.451 33.333 0.00 0.00 0.00 1.82
6990 8141 4.748277 TTACATACCTGGCCTTGAGTAC 57.252 45.455 3.32 0.00 0.00 2.73
7010 8161 1.179152 CATTCATCAGCTGTTGGCCA 58.821 50.000 21.65 0.00 43.05 5.36
7082 8233 4.613031 GTCGATTGTTTTCTTACTTGCTGC 59.387 41.667 0.00 0.00 0.00 5.25
7136 8287 1.108727 TGCCTGCAGTCCAAACCAAG 61.109 55.000 13.81 0.00 0.00 3.61
7206 8357 1.272769 ACTCTTGAGGTACGTTCTGGC 59.727 52.381 0.00 0.00 0.00 4.85
7209 8360 2.162338 TTGAGGTACGTTCTGGCCCG 62.162 60.000 0.00 0.00 0.00 6.13
7324 8480 3.933332 GGAACTACACTAAGGATGCACAC 59.067 47.826 0.00 0.00 0.00 3.82
7453 8610 3.735746 TGATAAGCATACGTCAGATTGCG 59.264 43.478 0.00 0.00 40.00 4.85
7499 8656 7.381408 GCAACCAACCAAAACTAAAGAATACTC 59.619 37.037 0.00 0.00 0.00 2.59
7805 8965 4.887071 ACCTGTACATGTTTTTGCTTCTGA 59.113 37.500 2.30 0.00 0.00 3.27
7918 9078 9.364989 GAGCTTGTATCAGAATATAAGATCCAC 57.635 37.037 8.22 0.00 41.96 4.02
7948 9108 1.138266 TCGACCCAGTATTTAGGCTGC 59.862 52.381 0.00 0.00 0.00 5.25
7962 9122 1.839424 GGCTGCACCTTTGGACTATT 58.161 50.000 0.50 0.00 34.51 1.73
7994 9154 3.003585 TGTCAGCAATGCAAGTACACAAG 59.996 43.478 8.35 0.00 0.00 3.16
8043 9511 6.642950 CGTGGCAAATAACTTACAATGGAAAA 59.357 34.615 0.00 0.00 0.00 2.29
8044 9512 7.169982 CGTGGCAAATAACTTACAATGGAAAAA 59.830 33.333 0.00 0.00 0.00 1.94
8128 9602 8.031864 CCATTAATAGGTAGCAGATGTACTCAG 58.968 40.741 0.00 0.00 0.00 3.35
8137 9611 3.439293 CAGATGTACTCAGTTGCCTACG 58.561 50.000 0.00 0.00 0.00 3.51
8142 9616 4.267536 TGTACTCAGTTGCCTACGTCTAT 58.732 43.478 0.00 0.00 0.00 1.98
8151 9625 7.172875 TCAGTTGCCTACGTCTATAATCTCTAC 59.827 40.741 0.00 0.00 0.00 2.59
8197 9671 6.234177 TCACCATCTTTTCTTTCTCTTCTCC 58.766 40.000 0.00 0.00 0.00 3.71
8221 9695 3.383761 CTGAAACTTCCAAATGCACCAC 58.616 45.455 0.00 0.00 0.00 4.16
8241 9715 0.101219 GCCACGGCTTCATTTCCATC 59.899 55.000 0.00 0.00 38.26 3.51
8244 9718 2.086869 CACGGCTTCATTTCCATCAGT 58.913 47.619 0.00 0.00 0.00 3.41
8283 9757 1.334869 CTTGTTGTTGGACACTCTGGC 59.665 52.381 0.00 0.00 0.00 4.85
8323 9798 8.087750 GGTGTCACATCATTTCCTTTTATCAAA 58.912 33.333 5.12 0.00 0.00 2.69
8324 9799 9.643693 GTGTCACATCATTTCCTTTTATCAAAT 57.356 29.630 0.00 0.00 0.00 2.32
8434 9911 1.691976 TCTGATGTTTGACGTGAGGGT 59.308 47.619 0.00 0.00 0.00 4.34
8506 9983 0.111253 AGCTTTGCTTGGCCTGTACT 59.889 50.000 3.32 0.00 33.89 2.73
8510 9987 0.036732 TTGCTTGGCCTGTACTCTGG 59.963 55.000 3.32 0.00 36.04 3.86
8591 10068 0.671251 TTTTGTGTCCATGGAACCGC 59.329 50.000 18.20 12.50 0.00 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.080995 CACAAGCGAGGCAGTCTAGC 61.081 60.000 0.00 0.00 43.23 3.42
3 4 0.244994 ACACAAGCGAGGCAGTCTAG 59.755 55.000 0.00 0.00 0.00 2.43
4 5 0.679505 AACACAAGCGAGGCAGTCTA 59.320 50.000 0.00 0.00 0.00 2.59
5 6 0.179045 AAACACAAGCGAGGCAGTCT 60.179 50.000 0.00 0.00 0.00 3.24
6 7 0.040958 CAAACACAAGCGAGGCAGTC 60.041 55.000 0.00 0.00 0.00 3.51
7 8 0.748005 ACAAACACAAGCGAGGCAGT 60.748 50.000 0.00 0.00 0.00 4.40
8 9 0.040958 GACAAACACAAGCGAGGCAG 60.041 55.000 0.00 0.00 0.00 4.85
9 10 0.746204 TGACAAACACAAGCGAGGCA 60.746 50.000 0.00 0.00 0.00 4.75
10 11 0.040958 CTGACAAACACAAGCGAGGC 60.041 55.000 0.00 0.00 0.00 4.70
11 12 1.261619 GACTGACAAACACAAGCGAGG 59.738 52.381 0.00 0.00 0.00 4.63
12 13 1.071239 CGACTGACAAACACAAGCGAG 60.071 52.381 0.00 0.00 0.00 5.03
13 14 0.927537 CGACTGACAAACACAAGCGA 59.072 50.000 0.00 0.00 0.00 4.93
14 15 0.654472 GCGACTGACAAACACAAGCG 60.654 55.000 0.00 0.00 0.00 4.68
15 16 0.657840 AGCGACTGACAAACACAAGC 59.342 50.000 0.00 0.00 0.00 4.01
16 17 1.003545 CCAGCGACTGACAAACACAAG 60.004 52.381 8.20 0.00 32.44 3.16
17 18 1.013596 CCAGCGACTGACAAACACAA 58.986 50.000 8.20 0.00 32.44 3.33
18 19 0.813610 CCCAGCGACTGACAAACACA 60.814 55.000 8.20 0.00 32.44 3.72
19 20 1.941812 CCCAGCGACTGACAAACAC 59.058 57.895 8.20 0.00 32.44 3.32
20 21 1.891919 GCCCAGCGACTGACAAACA 60.892 57.895 8.20 0.00 32.44 2.83
21 22 1.598130 AGCCCAGCGACTGACAAAC 60.598 57.895 8.20 0.00 32.44 2.93
22 23 1.597854 CAGCCCAGCGACTGACAAA 60.598 57.895 8.20 0.00 35.90 2.83
23 24 2.031012 CAGCCCAGCGACTGACAA 59.969 61.111 8.20 0.00 35.90 3.18
24 25 2.917227 TCAGCCCAGCGACTGACA 60.917 61.111 8.20 0.00 37.99 3.58
26 27 3.695606 GGTCAGCCCAGCGACTGA 61.696 66.667 8.20 0.00 40.54 3.41
31 32 4.457496 ACATCGGTCAGCCCAGCG 62.457 66.667 0.00 0.00 38.65 5.18
32 33 2.512515 GACATCGGTCAGCCCAGC 60.513 66.667 0.00 0.00 43.73 4.85
33 34 2.187946 GGACATCGGTCAGCCCAG 59.812 66.667 0.00 0.00 46.17 4.45
34 35 2.606213 TGGACATCGGTCAGCCCA 60.606 61.111 0.00 0.00 46.17 5.36
35 36 1.690219 ATCTGGACATCGGTCAGCCC 61.690 60.000 0.00 0.00 46.17 5.19
36 37 0.249657 GATCTGGACATCGGTCAGCC 60.250 60.000 0.00 0.00 46.17 4.85
37 38 0.249657 GGATCTGGACATCGGTCAGC 60.250 60.000 0.00 0.00 46.17 4.26
38 39 1.114627 TGGATCTGGACATCGGTCAG 58.885 55.000 0.00 0.00 46.17 3.51
39 40 1.567357 TTGGATCTGGACATCGGTCA 58.433 50.000 0.00 0.00 46.17 4.02
40 41 2.691409 TTTGGATCTGGACATCGGTC 57.309 50.000 0.00 0.00 43.55 4.79
41 42 2.305927 ACTTTTGGATCTGGACATCGGT 59.694 45.455 0.00 0.00 0.00 4.69
42 43 2.991250 ACTTTTGGATCTGGACATCGG 58.009 47.619 0.00 0.00 0.00 4.18
43 44 4.332819 GGTAACTTTTGGATCTGGACATCG 59.667 45.833 0.00 0.00 0.00 3.84
44 45 4.332819 CGGTAACTTTTGGATCTGGACATC 59.667 45.833 0.00 0.00 0.00 3.06
45 46 4.261801 CGGTAACTTTTGGATCTGGACAT 58.738 43.478 0.00 0.00 0.00 3.06
46 47 3.558321 CCGGTAACTTTTGGATCTGGACA 60.558 47.826 0.00 0.00 0.00 4.02
47 48 3.007635 CCGGTAACTTTTGGATCTGGAC 58.992 50.000 0.00 0.00 0.00 4.02
48 49 2.640826 ACCGGTAACTTTTGGATCTGGA 59.359 45.455 4.49 0.00 0.00 3.86
49 50 2.747446 CACCGGTAACTTTTGGATCTGG 59.253 50.000 6.87 0.00 0.00 3.86
50 51 3.408634 ACACCGGTAACTTTTGGATCTG 58.591 45.455 6.87 0.00 0.00 2.90
51 52 3.558533 GGACACCGGTAACTTTTGGATCT 60.559 47.826 6.87 0.00 0.00 2.75
52 53 2.745821 GGACACCGGTAACTTTTGGATC 59.254 50.000 6.87 0.00 0.00 3.36
53 54 2.106857 TGGACACCGGTAACTTTTGGAT 59.893 45.455 6.87 0.00 0.00 3.41
54 55 1.489649 TGGACACCGGTAACTTTTGGA 59.510 47.619 6.87 0.00 0.00 3.53
55 56 1.877443 CTGGACACCGGTAACTTTTGG 59.123 52.381 6.87 0.00 0.00 3.28
56 57 1.265905 GCTGGACACCGGTAACTTTTG 59.734 52.381 6.87 0.00 31.34 2.44
57 58 1.601166 GCTGGACACCGGTAACTTTT 58.399 50.000 6.87 0.00 31.34 2.27
58 59 0.250597 GGCTGGACACCGGTAACTTT 60.251 55.000 6.87 0.00 31.34 2.66
59 60 1.373812 GGCTGGACACCGGTAACTT 59.626 57.895 6.87 0.00 31.34 2.66
60 61 2.590114 GGGCTGGACACCGGTAACT 61.590 63.158 6.87 0.00 31.34 2.24
61 62 2.046604 GGGCTGGACACCGGTAAC 60.047 66.667 6.87 3.88 31.34 2.50
62 63 1.706995 TTTGGGCTGGACACCGGTAA 61.707 55.000 6.87 0.00 31.34 2.85
63 64 1.706995 TTTTGGGCTGGACACCGGTA 61.707 55.000 6.87 0.00 31.34 4.02
64 65 2.575455 TTTTTGGGCTGGACACCGGT 62.575 55.000 0.00 0.00 31.34 5.28
65 66 1.184970 ATTTTTGGGCTGGACACCGG 61.185 55.000 0.00 0.00 0.00 5.28
66 67 0.243636 GATTTTTGGGCTGGACACCG 59.756 55.000 0.00 0.00 0.00 4.94
67 68 1.273327 CAGATTTTTGGGCTGGACACC 59.727 52.381 0.00 0.00 0.00 4.16
68 69 2.730550 CAGATTTTTGGGCTGGACAC 57.269 50.000 0.00 0.00 0.00 3.67
75 76 9.710900 CCTTATATAAATTCCAGATTTTTGGGC 57.289 33.333 0.00 0.00 38.81 5.36
101 102 6.202570 TGGCATCGGGTAAAATACGTATTTAC 59.797 38.462 28.71 23.86 40.74 2.01
102 103 6.286758 TGGCATCGGGTAAAATACGTATTTA 58.713 36.000 28.71 15.57 35.00 1.40
103 104 5.124645 TGGCATCGGGTAAAATACGTATTT 58.875 37.500 24.43 24.43 37.49 1.40
104 105 4.706035 TGGCATCGGGTAAAATACGTATT 58.294 39.130 15.07 15.07 0.00 1.89
105 106 4.202284 ACTGGCATCGGGTAAAATACGTAT 60.202 41.667 1.14 1.14 0.00 3.06
106 107 3.132646 ACTGGCATCGGGTAAAATACGTA 59.867 43.478 0.00 0.00 0.00 3.57
107 108 2.093341 ACTGGCATCGGGTAAAATACGT 60.093 45.455 0.00 0.00 0.00 3.57
108 109 2.286833 CACTGGCATCGGGTAAAATACG 59.713 50.000 0.00 0.00 0.00 3.06
109 110 3.311596 GTCACTGGCATCGGGTAAAATAC 59.688 47.826 0.00 0.00 0.00 1.89
110 111 3.055021 TGTCACTGGCATCGGGTAAAATA 60.055 43.478 0.00 0.00 0.00 1.40
111 112 2.290641 TGTCACTGGCATCGGGTAAAAT 60.291 45.455 0.00 0.00 0.00 1.82
112 113 1.072489 TGTCACTGGCATCGGGTAAAA 59.928 47.619 0.00 0.00 0.00 1.52
113 114 0.687920 TGTCACTGGCATCGGGTAAA 59.312 50.000 0.00 0.00 0.00 2.01
114 115 0.036765 GTGTCACTGGCATCGGGTAA 60.037 55.000 0.00 0.00 0.00 2.85
115 116 1.594833 GTGTCACTGGCATCGGGTA 59.405 57.895 0.00 0.00 0.00 3.69
116 117 2.347490 GTGTCACTGGCATCGGGT 59.653 61.111 0.00 0.00 0.00 5.28
117 118 2.436646 GGTGTCACTGGCATCGGG 60.437 66.667 2.35 0.00 0.00 5.14
118 119 2.815211 CGGTGTCACTGGCATCGG 60.815 66.667 8.49 0.00 36.88 4.18
119 120 2.815211 CCGGTGTCACTGGCATCG 60.815 66.667 17.99 9.41 37.90 3.84
131 132 1.632046 GCACGTTATGGACACCGGTG 61.632 60.000 32.83 32.83 0.00 4.94
132 133 1.375013 GCACGTTATGGACACCGGT 60.375 57.895 0.00 0.00 0.00 5.28
133 134 2.104253 GGCACGTTATGGACACCGG 61.104 63.158 0.00 0.00 0.00 5.28
134 135 1.079405 AGGCACGTTATGGACACCG 60.079 57.895 0.00 0.00 0.00 4.94
135 136 0.743345 GGAGGCACGTTATGGACACC 60.743 60.000 0.00 0.00 0.00 4.16
136 137 1.082117 CGGAGGCACGTTATGGACAC 61.082 60.000 0.00 0.00 0.00 3.67
137 138 1.216977 CGGAGGCACGTTATGGACA 59.783 57.895 0.00 0.00 0.00 4.02
138 139 2.171725 GCGGAGGCACGTTATGGAC 61.172 63.158 3.67 0.00 39.62 4.02
139 140 2.185867 GCGGAGGCACGTTATGGA 59.814 61.111 3.67 0.00 39.62 3.41
155 156 0.035056 TAGCTCTTCAAAGCAGGGGC 60.035 55.000 0.00 0.00 45.00 5.80
156 157 2.290577 ACTTAGCTCTTCAAAGCAGGGG 60.291 50.000 0.00 0.00 45.00 4.79
157 158 3.006247 GACTTAGCTCTTCAAAGCAGGG 58.994 50.000 0.00 0.00 45.00 4.45
158 159 3.434984 GTGACTTAGCTCTTCAAAGCAGG 59.565 47.826 0.00 0.00 45.00 4.85
159 160 4.314121 AGTGACTTAGCTCTTCAAAGCAG 58.686 43.478 0.00 0.00 45.00 4.24
160 161 4.342862 AGTGACTTAGCTCTTCAAAGCA 57.657 40.909 0.00 0.00 45.00 3.91
161 162 4.752101 TCAAGTGACTTAGCTCTTCAAAGC 59.248 41.667 0.00 0.00 42.82 3.51
199 200 0.550914 CAAGCCTACCCCCATTAGCA 59.449 55.000 0.00 0.00 0.00 3.49
206 207 1.052694 ATACGACCAAGCCTACCCCC 61.053 60.000 0.00 0.00 0.00 5.40
294 295 5.705397 ATGATCCCTTGAATCAGTTGAGA 57.295 39.130 0.00 0.00 0.00 3.27
343 344 9.243105 CCAGAGAAAATATAGTTCTTCCCAAAA 57.757 33.333 3.72 0.00 35.46 2.44
366 367 7.497249 TCAGTTCTCTTCTTTCTTTTTCTCCAG 59.503 37.037 0.00 0.00 0.00 3.86
376 377 5.619220 AGCAACATCAGTTCTCTTCTTTCT 58.381 37.500 0.00 0.00 35.28 2.52
418 453 1.080569 GTTTCACAAGCCCATGCGG 60.081 57.895 0.00 0.00 44.33 5.69
494 532 1.360551 CTACACGGGAGATCAGCGG 59.639 63.158 0.00 0.00 0.00 5.52
856 894 3.942439 GAGCCCGGATACCCTGCC 61.942 72.222 0.73 0.00 0.00 4.85
857 895 2.844839 AGAGCCCGGATACCCTGC 60.845 66.667 0.73 0.00 0.00 4.85
858 896 0.112606 TAGAGAGCCCGGATACCCTG 59.887 60.000 0.73 0.00 0.00 4.45
859 897 0.112801 GTAGAGAGCCCGGATACCCT 59.887 60.000 0.73 0.00 0.00 4.34
864 902 1.834822 GCAGGTAGAGAGCCCGGAT 60.835 63.158 0.73 0.00 0.00 4.18
1004 1042 1.953138 GCGATCAGATCCACCGCTG 60.953 63.158 4.73 0.00 42.24 5.18
1005 1043 2.419198 GCGATCAGATCCACCGCT 59.581 61.111 4.73 0.00 42.24 5.52
1074 1112 1.792006 AAAAGAGTACGGAACCAGCG 58.208 50.000 0.00 0.00 0.00 5.18
1147 1185 2.202919 TCGTGCGCTCCATCATGG 60.203 61.111 9.73 0.00 39.43 3.66
1148 1186 2.242572 CCTCGTGCGCTCCATCATG 61.243 63.158 9.73 0.00 0.00 3.07
1162 1200 3.654414 CGGAAAATCCTAGGAATCCTCG 58.346 50.000 26.63 19.53 34.61 4.63
1175 1213 4.319133 TGCTGGAGGCGGAAAATC 57.681 55.556 0.00 0.00 45.43 2.17
1272 1310 8.844244 CAGATTGAGTTAATAATAAAGCAGCCT 58.156 33.333 0.00 0.00 0.00 4.58
1285 1323 9.635520 CTCAATTCTTTTGCAGATTGAGTTAAT 57.364 29.630 19.58 0.00 39.43 1.40
1296 1334 5.050567 GCAGTTTTCCTCAATTCTTTTGCAG 60.051 40.000 0.00 0.00 0.00 4.41
1622 1661 1.471287 CACTGCACCATGACCATCAAG 59.529 52.381 0.00 0.00 0.00 3.02
1753 1792 2.627515 TCTGCTGGCCATAGTCAATC 57.372 50.000 5.51 0.00 0.00 2.67
1797 1836 6.031417 CGACAAAAATAAGTGAACTGCGATTC 59.969 38.462 0.00 0.00 0.00 2.52
1801 1840 4.523813 ACGACAAAAATAAGTGAACTGCG 58.476 39.130 0.00 0.00 0.00 5.18
1842 1881 5.551233 AGTGTGCATACATGTAAGTTCTGT 58.449 37.500 16.44 0.00 39.39 3.41
1872 1911 7.529880 TGCATATAGAAATACATCATCGCTG 57.470 36.000 0.00 0.00 0.00 5.18
1949 1988 5.009911 GCAATAATAGTTGACATGGATGGCA 59.990 40.000 0.00 0.00 45.84 4.92
2003 2042 6.828273 ACTTGCATATGACTTTATGGTTAGCA 59.172 34.615 6.97 0.00 31.50 3.49
2129 2169 3.490419 GCCTGTGTCAAGTACCCTATACG 60.490 52.174 0.00 0.00 0.00 3.06
2130 2170 3.181468 GGCCTGTGTCAAGTACCCTATAC 60.181 52.174 0.00 0.00 0.00 1.47
2131 2171 3.036091 GGCCTGTGTCAAGTACCCTATA 58.964 50.000 0.00 0.00 0.00 1.31
2132 2172 1.838077 GGCCTGTGTCAAGTACCCTAT 59.162 52.381 0.00 0.00 0.00 2.57
2133 2173 1.203262 AGGCCTGTGTCAAGTACCCTA 60.203 52.381 3.11 0.00 0.00 3.53
2134 2174 0.473886 AGGCCTGTGTCAAGTACCCT 60.474 55.000 3.11 0.00 0.00 4.34
2135 2175 0.036294 GAGGCCTGTGTCAAGTACCC 60.036 60.000 12.00 0.00 0.00 3.69
2162 2203 0.249447 CATCAGCCATGGCAATGCTG 60.249 55.000 37.18 25.62 44.88 4.41
2177 2218 0.337082 TTCCCCCTCTACCGACATCA 59.663 55.000 0.00 0.00 0.00 3.07
2178 2219 1.492764 TTTCCCCCTCTACCGACATC 58.507 55.000 0.00 0.00 0.00 3.06
2183 2331 3.036091 TCAGTTATTTCCCCCTCTACCG 58.964 50.000 0.00 0.00 0.00 4.02
2276 2424 6.070995 TCCCAAAATCACTATGAACTACGACT 60.071 38.462 0.00 0.00 0.00 4.18
2294 2442 3.695830 ACTATCGCAGAAGTCCCAAAA 57.304 42.857 0.00 0.00 43.58 2.44
2295 2443 3.695830 AACTATCGCAGAAGTCCCAAA 57.304 42.857 0.00 0.00 43.58 3.28
2296 2444 3.132289 CCTAACTATCGCAGAAGTCCCAA 59.868 47.826 0.00 0.00 43.58 4.12
2298 2446 2.036089 CCCTAACTATCGCAGAAGTCCC 59.964 54.545 0.00 0.00 43.58 4.46
2426 2574 6.245408 TGCAGGTTACTAGGATTGTCATTTT 58.755 36.000 0.00 0.00 0.00 1.82
2507 2655 6.398234 TTCTAGCATCCTGTATCTCTTCAC 57.602 41.667 0.00 0.00 0.00 3.18
2510 2658 7.952930 TCCTTATTCTAGCATCCTGTATCTCTT 59.047 37.037 0.00 0.00 0.00 2.85
2556 2704 4.214332 CCTTCTTTCTTCAAAACCCTCTCG 59.786 45.833 0.00 0.00 0.00 4.04
2637 2785 7.124347 TCATGTATGTTTGTTAGGTTCGAAC 57.876 36.000 20.14 20.14 0.00 3.95
2657 2805 5.795972 AGAGGAGATGTAGATTGCATCATG 58.204 41.667 9.29 0.00 43.66 3.07
2680 2828 4.902443 TTGGTCGCATTTGTTAGTTTGA 57.098 36.364 0.00 0.00 0.00 2.69
2798 2946 0.947244 GCCCAACAATCAGATAGCCG 59.053 55.000 0.00 0.00 0.00 5.52
2878 3027 5.720202 ACTGCATCTTTACTGTTATCGACA 58.280 37.500 0.00 0.00 36.65 4.35
2976 3126 5.888161 AGAACAACAAGACAGACCATTTCTT 59.112 36.000 0.00 0.00 28.96 2.52
3087 3237 7.324935 TCACTAAGAAGGCGTGATGTAATAAA 58.675 34.615 0.00 0.00 33.15 1.40
3089 3239 6.459670 TCACTAAGAAGGCGTGATGTAATA 57.540 37.500 0.00 0.00 33.15 0.98
3379 3537 2.158475 AGATGCACTCAGGGAAAACCAA 60.158 45.455 0.00 0.00 43.89 3.67
3481 3640 5.687730 CGTATTAAGTCAGGCTATCACAGTG 59.312 44.000 0.00 0.00 0.00 3.66
3484 3643 5.358725 TGACGTATTAAGTCAGGCTATCACA 59.641 40.000 8.16 0.00 42.91 3.58
3485 3644 5.828747 TGACGTATTAAGTCAGGCTATCAC 58.171 41.667 8.16 0.00 42.91 3.06
3494 3653 4.763279 TGAGGTGACTGACGTATTAAGTCA 59.237 41.667 15.10 15.10 46.05 3.41
3495 3654 5.094134 GTGAGGTGACTGACGTATTAAGTC 58.906 45.833 11.30 11.30 44.43 3.01
3496 3655 5.056894 GTGAGGTGACTGACGTATTAAGT 57.943 43.478 0.00 0.00 44.43 2.24
3511 3670 1.827344 TCAGGCTATCACAGTGAGGTG 59.173 52.381 9.64 2.92 40.16 4.00
3512 3671 1.827969 GTCAGGCTATCACAGTGAGGT 59.172 52.381 9.64 0.00 0.00 3.85
3513 3672 2.106566 AGTCAGGCTATCACAGTGAGG 58.893 52.381 9.64 5.74 0.00 3.86
3514 3673 3.883830 AAGTCAGGCTATCACAGTGAG 57.116 47.619 9.64 0.00 0.00 3.51
3515 3674 5.939764 ATTAAGTCAGGCTATCACAGTGA 57.060 39.130 5.50 5.50 0.00 3.41
3516 3675 5.687730 CGTATTAAGTCAGGCTATCACAGTG 59.312 44.000 0.00 0.00 0.00 3.66
3517 3676 5.360144 ACGTATTAAGTCAGGCTATCACAGT 59.640 40.000 0.00 0.00 0.00 3.55
3518 3677 5.833082 ACGTATTAAGTCAGGCTATCACAG 58.167 41.667 0.00 0.00 0.00 3.66
3519 3678 5.358725 TGACGTATTAAGTCAGGCTATCACA 59.641 40.000 8.16 0.00 42.91 3.58
3520 3679 5.828747 TGACGTATTAAGTCAGGCTATCAC 58.171 41.667 8.16 0.00 42.91 3.06
3529 3688 4.763279 TGAGGTGACTGACGTATTAAGTCA 59.237 41.667 15.10 15.10 46.05 3.41
3530 3689 5.094134 GTGAGGTGACTGACGTATTAAGTC 58.906 45.833 11.30 11.30 44.43 3.01
3531 3690 5.056894 GTGAGGTGACTGACGTATTAAGT 57.943 43.478 0.00 0.00 44.43 2.24
3546 3705 1.827344 TCAGGCTATCACAGTGAGGTG 59.173 52.381 9.64 2.92 40.16 4.00
3547 3706 1.827969 GTCAGGCTATCACAGTGAGGT 59.172 52.381 9.64 0.00 0.00 3.85
3548 3707 2.106566 AGTCAGGCTATCACAGTGAGG 58.893 52.381 9.64 5.74 0.00 3.86
3549 3708 3.883830 AAGTCAGGCTATCACAGTGAG 57.116 47.619 9.64 0.00 0.00 3.51
3550 3709 5.939764 ATTAAGTCAGGCTATCACAGTGA 57.060 39.130 5.50 5.50 0.00 3.41
3551 3710 6.219473 CCTATTAAGTCAGGCTATCACAGTG 58.781 44.000 0.00 0.00 0.00 3.66
3552 3711 5.305644 CCCTATTAAGTCAGGCTATCACAGT 59.694 44.000 0.00 0.00 0.00 3.55
3553 3712 5.540337 TCCCTATTAAGTCAGGCTATCACAG 59.460 44.000 0.00 0.00 0.00 3.66
3583 3742 9.535170 CCCATCCTTATTTCTATGAGTAGTCTA 57.465 37.037 0.00 0.00 0.00 2.59
3584 3743 8.013667 ACCCATCCTTATTTCTATGAGTAGTCT 58.986 37.037 0.00 0.00 0.00 3.24
3596 3755 4.600062 AGTTGGACACCCATCCTTATTTC 58.400 43.478 0.00 0.00 43.12 2.17
3600 3759 3.112263 CCTAGTTGGACACCCATCCTTA 58.888 50.000 0.00 0.00 43.12 2.69
3693 3927 3.644335 GTTACTCCTGGTGGGATCTAGT 58.356 50.000 0.33 0.00 44.15 2.57
3744 3978 3.681593 GGCTCTGGTACCAACATGTAAA 58.318 45.455 17.11 0.00 0.00 2.01
3750 3984 1.669440 GTCGGCTCTGGTACCAACA 59.331 57.895 17.11 4.48 0.00 3.33
3754 3988 1.076485 TAGGGTCGGCTCTGGTACC 60.076 63.158 0.00 4.43 0.00 3.34
3756 3990 1.076485 GGTAGGGTCGGCTCTGGTA 60.076 63.158 0.00 0.00 0.00 3.25
3757 3991 2.363925 GGTAGGGTCGGCTCTGGT 60.364 66.667 0.00 0.00 0.00 4.00
3758 3992 2.363795 TGGTAGGGTCGGCTCTGG 60.364 66.667 0.00 0.00 0.00 3.86
3759 3993 1.379977 TCTGGTAGGGTCGGCTCTG 60.380 63.158 0.00 0.00 0.00 3.35
3760 3994 1.076632 CTCTGGTAGGGTCGGCTCT 60.077 63.158 0.00 0.00 0.00 4.09
3761 3995 2.787567 GCTCTGGTAGGGTCGGCTC 61.788 68.421 0.00 0.00 0.00 4.70
3762 3996 2.760385 GCTCTGGTAGGGTCGGCT 60.760 66.667 0.00 0.00 0.00 5.52
3763 3997 3.851128 GGCTCTGGTAGGGTCGGC 61.851 72.222 0.00 0.00 0.00 5.54
3764 3998 3.528370 CGGCTCTGGTAGGGTCGG 61.528 72.222 0.00 0.00 0.00 4.79
3765 3999 2.439701 TCGGCTCTGGTAGGGTCG 60.440 66.667 0.00 0.00 0.00 4.79
3766 4000 2.424733 GGTCGGCTCTGGTAGGGTC 61.425 68.421 0.00 0.00 0.00 4.46
3767 4001 2.363925 GGTCGGCTCTGGTAGGGT 60.364 66.667 0.00 0.00 0.00 4.34
3768 4002 3.155167 GGGTCGGCTCTGGTAGGG 61.155 72.222 0.00 0.00 0.00 3.53
3769 4003 2.042843 AGGGTCGGCTCTGGTAGG 60.043 66.667 0.00 0.00 0.00 3.18
3770 4004 2.482333 CGAGGGTCGGCTCTGGTAG 61.482 68.421 0.00 0.00 36.00 3.18
3916 4153 3.957435 ATCCTCGTCGGCCCACAGA 62.957 63.158 0.16 0.00 0.00 3.41
3963 4200 6.505048 TCATCCATATTAGGCCAGGATATG 57.495 41.667 18.74 18.74 36.99 1.78
3967 4204 5.663106 GTCTATCATCCATATTAGGCCAGGA 59.337 44.000 5.01 2.23 0.00 3.86
4024 4261 0.177141 TTCTTTCCGTATGGGCTCCG 59.823 55.000 0.00 0.00 35.24 4.63
4034 4271 4.275196 GCTTAACTTTGGAGTTCTTTCCGT 59.725 41.667 0.00 0.00 44.75 4.69
4095 4332 0.930726 ACCTGGGACCAACTTCCAAA 59.069 50.000 0.00 0.00 37.40 3.28
4097 4334 1.843421 CACCTGGGACCAACTTCCA 59.157 57.895 0.00 0.00 37.40 3.53
4169 4406 1.152525 TCCTGGCGGGATCTAGACC 60.153 63.158 12.08 0.00 39.58 3.85
4196 4433 0.881118 GACACACCCGTCGGTTACTA 59.119 55.000 11.06 0.00 42.04 1.82
4315 4552 6.772233 TGACATCTTTTCTCAGAATGGTTTCA 59.228 34.615 0.00 0.00 36.16 2.69
4360 4598 6.678878 CAGCCCATGAAAGATTAAGATCATG 58.321 40.000 7.45 7.45 45.47 3.07
4372 4610 2.019984 GGTTCTAGCAGCCCATGAAAG 58.980 52.381 0.00 0.00 0.00 2.62
4397 4635 2.344025 CGGAGGGAAAGAAAACCGTAG 58.656 52.381 0.00 0.00 36.38 3.51
4400 4638 0.887387 TGCGGAGGGAAAGAAAACCG 60.887 55.000 0.00 0.00 42.63 4.44
4490 4728 4.202245 TGAACTCCTGCACCAGTATAAC 57.798 45.455 0.00 0.00 0.00 1.89
4493 4731 3.110705 AGATGAACTCCTGCACCAGTAT 58.889 45.455 0.00 0.00 0.00 2.12
4651 4901 5.237815 TGTGACTCATGGTGACTTTATGAC 58.762 41.667 0.00 0.00 33.24 3.06
4658 4908 5.482908 GAAAGTATGTGACTCATGGTGACT 58.517 41.667 0.21 0.00 37.44 3.41
4682 4932 3.698250 TGAGAAACACAAGGTCCGG 57.302 52.632 0.00 0.00 0.00 5.14
4708 5133 7.820648 ACATAAATCAGGCTAGTTTTGAAGTG 58.179 34.615 2.22 0.00 0.00 3.16
4891 6042 5.126384 CACCAAAGGTTCAAAAGGTTACTCA 59.874 40.000 0.00 0.00 31.02 3.41
4895 6046 6.800072 ATTCACCAAAGGTTCAAAAGGTTA 57.200 33.333 0.00 0.00 31.02 2.85
4921 6072 1.198637 GCTGAGTGACCAATCTGCAAC 59.801 52.381 19.28 0.00 45.38 4.17
4960 6111 3.799753 CGGAAAGCATCTGGTCCG 58.200 61.111 0.00 0.00 46.23 4.79
4989 6140 6.143206 TCCTCATGGTCCTGAATGAGTAATA 58.857 40.000 13.84 0.00 45.52 0.98
5047 6198 7.864108 TTCTGTGTATGGGATGTTATCTTTG 57.136 36.000 0.00 0.00 0.00 2.77
5186 6337 3.181450 ACAGACAACCTCTTTCCTCTTGG 60.181 47.826 0.00 0.00 0.00 3.61
5416 6567 6.530019 AAAGTCATTACCTTATTGGCCAAG 57.470 37.500 24.94 12.63 40.22 3.61
5491 6642 6.729690 AATGGAGATCAACAAAAGGTTTCA 57.270 33.333 0.00 0.00 37.72 2.69
5836 6987 4.367386 CCTTGCTAAAGGCTGATTCAAG 57.633 45.455 10.83 10.83 46.50 3.02
5881 7032 3.064545 GCCATCATACTTTCAGACAGCAC 59.935 47.826 0.00 0.00 0.00 4.40
5964 7115 2.349590 CCATCATGTGCTTCGTCAGAA 58.650 47.619 0.00 0.00 34.76 3.02
5967 7118 0.321475 TGCCATCATGTGCTTCGTCA 60.321 50.000 0.00 0.00 0.00 4.35
6022 7173 0.742281 AAGTAGCGCACTCCAGCATG 60.742 55.000 11.47 0.00 36.04 4.06
6120 7271 4.080638 CCTTTAGATGGAGAGGACAGCTTT 60.081 45.833 0.00 0.00 35.91 3.51
6381 7532 2.740981 GTGAGATTCCACTGAAGTGCTG 59.259 50.000 4.87 0.00 44.34 4.41
6472 7623 2.553028 CGCCAGCCAAGATATACCCAAT 60.553 50.000 0.00 0.00 0.00 3.16
6525 7676 3.003480 CCGTTCATCTTCCCAAGAGAAC 58.997 50.000 13.23 13.23 41.61 3.01
6689 7840 6.703319 TCAAAATCATCGGTAGTGGTAGAAA 58.297 36.000 0.00 0.00 0.00 2.52
6861 8012 3.277715 CCCTTCTCCAAGAGCTTGATTC 58.722 50.000 11.61 0.00 42.93 2.52
6915 8066 5.852282 AAAGCAAGCCTTTTCTTGAGTAA 57.148 34.783 7.60 0.00 44.61 2.24
6970 8121 3.036091 GGTACTCAAGGCCAGGTATGTA 58.964 50.000 5.01 0.00 0.00 2.29
6990 8141 0.458669 GGCCAACAGCTGATGAATGG 59.541 55.000 24.19 19.91 43.05 3.16
7010 8161 7.343574 ACCTACCCAATCCGCTTTTAAATAAAT 59.656 33.333 0.00 0.00 0.00 1.40
7082 8233 8.615585 GTGAGTTCGTAATTTAAACAAATGTCG 58.384 33.333 0.00 0.00 0.00 4.35
7136 8287 4.340950 TGAGACAACTTTGATCCCCAAAAC 59.659 41.667 0.00 0.00 43.50 2.43
7143 8294 5.613358 AAACGATGAGACAACTTTGATCC 57.387 39.130 0.00 0.00 0.00 3.36
7154 8305 3.314080 TCCCACAACAAAAACGATGAGAC 59.686 43.478 0.00 0.00 0.00 3.36
7397 8553 9.246670 TGAATTAAAATCTGATGTTGTGGAGAT 57.753 29.630 3.27 0.00 0.00 2.75
7753 8913 3.782046 ACATGATTGCTACTGTACCGAC 58.218 45.455 0.00 0.00 0.00 4.79
7783 8943 5.239306 TCTCAGAAGCAAAAACATGTACAGG 59.761 40.000 5.87 5.87 0.00 4.00
7805 8965 9.822185 GCCAGTAAATATTCAAAAATTCCATCT 57.178 29.630 0.00 0.00 0.00 2.90
7895 9055 8.043710 GGGGTGGATCTTATATTCTGATACAAG 58.956 40.741 0.00 0.00 33.42 3.16
7962 9122 7.774134 ACTTGCATTGCTGACAATATATGAAA 58.226 30.769 10.49 0.00 44.83 2.69
7982 9142 6.905609 GTCTGTTTAGTTTCTTGTGTACTTGC 59.094 38.462 0.00 0.00 0.00 4.01
7994 9154 4.846779 TGGCCATTGTCTGTTTAGTTTC 57.153 40.909 0.00 0.00 0.00 2.78
8128 9602 6.206243 TGGTAGAGATTATAGACGTAGGCAAC 59.794 42.308 0.00 0.00 0.00 4.17
8137 9611 6.071840 ACGATGCCTTGGTAGAGATTATAGAC 60.072 42.308 0.00 0.00 0.00 2.59
8142 9616 3.958147 TCACGATGCCTTGGTAGAGATTA 59.042 43.478 0.00 0.00 0.00 1.75
8151 9625 1.608590 AGTTTTGTCACGATGCCTTGG 59.391 47.619 0.00 0.00 0.00 3.61
8197 9671 3.383761 GTGCATTTGGAAGTTTCAGGTG 58.616 45.455 0.00 0.00 0.00 4.00
8283 9757 3.007290 TGTGACACCAAGATTCTCAGAGG 59.993 47.826 2.45 0.00 0.00 3.69
8324 9799 8.478066 GGATCCAATATAGTCTACACATGCATA 58.522 37.037 6.95 0.00 0.00 3.14
8506 9983 2.271173 CAGATGCAGCCAGCCAGA 59.729 61.111 0.00 0.00 44.83 3.86
8510 9987 1.001597 GATTAAGCAGATGCAGCCAGC 60.002 52.381 8.77 8.77 45.16 4.85
8542 10019 7.816513 TGATTATCTCAGTCATTAGCATAGCAC 59.183 37.037 0.00 0.00 0.00 4.40
8555 10032 7.965107 GGACACAAAACATTGATTATCTCAGTC 59.035 37.037 0.00 0.00 34.68 3.51
8591 10068 2.087646 TGAGAGTCTCTGACATGTCCG 58.912 52.381 22.85 16.78 34.60 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.