Multiple sequence alignment - TraesCS4A01G207500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G207500 chr4A 100.000 3485 0 0 1 3485 500661041 500657557 0.000000e+00 6436.0
1 TraesCS4A01G207500 chr4A 81.034 116 16 4 38 150 593843495 593843383 1.720000e-13 87.9
2 TraesCS4A01G207500 chr4D 93.060 3516 166 25 1 3471 87965768 87962286 0.000000e+00 5070.0
3 TraesCS4A01G207500 chr4B 93.348 3202 154 23 307 3485 124564306 124561141 0.000000e+00 4678.0
4 TraesCS4A01G207500 chr4B 86.747 249 20 5 1 236 124565139 124564891 7.420000e-67 265.0
5 TraesCS4A01G207500 chr5A 90.909 44 4 0 1963 2006 693308182 693308139 3.760000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G207500 chr4A 500657557 500661041 3484 True 6436.0 6436 100.0000 1 3485 1 chr4A.!!$R1 3484
1 TraesCS4A01G207500 chr4D 87962286 87965768 3482 True 5070.0 5070 93.0600 1 3471 1 chr4D.!!$R1 3470
2 TraesCS4A01G207500 chr4B 124561141 124565139 3998 True 2471.5 4678 90.0475 1 3485 2 chr4B.!!$R1 3484

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
522 1089 0.255890 AGGCCGCTATTGTGATGGTT 59.744 50.0 0.00 0.00 0.00 3.67 F
1275 1852 0.106519 AAAGCTGCCGGAATAGCCAT 60.107 50.0 18.43 8.43 40.76 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2364 2954 1.188219 TGTCACAGCCAGACTCCTCC 61.188 60.0 0.0 0.0 36.94 4.3 R
2564 3156 0.392998 CATCAACGGGGAACAGAGGG 60.393 60.0 0.0 0.0 0.00 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 0.463654 GATCCGCTACCATGCCACAA 60.464 55.000 0.00 0.00 0.00 3.33
52 59 1.038130 ATCCGTCTCAGGGTTCTCCG 61.038 60.000 0.00 0.00 41.52 4.63
55 62 3.068691 TCTCAGGGTTCTCCGGCG 61.069 66.667 0.00 0.00 41.52 6.46
56 63 3.382832 CTCAGGGTTCTCCGGCGT 61.383 66.667 6.01 0.00 41.52 5.68
144 158 2.184533 CCCAAATCCAAACCCTAACCC 58.815 52.381 0.00 0.00 0.00 4.11
154 168 4.161102 CAAACCCTAACCCAACCCAAATA 58.839 43.478 0.00 0.00 0.00 1.40
156 170 3.989056 ACCCTAACCCAACCCAAATATG 58.011 45.455 0.00 0.00 0.00 1.78
171 185 5.220931 CCCAAATATGTAGTTCTTGAGCAGC 60.221 44.000 0.00 0.00 0.00 5.25
172 186 5.496387 CAAATATGTAGTTCTTGAGCAGCG 58.504 41.667 0.00 0.00 0.00 5.18
212 226 6.911250 ATTCATATCCATGTCGGTGTACTA 57.089 37.500 0.00 0.00 35.57 1.82
223 237 2.015587 CGGTGTACTAGGAGTGGAGAC 58.984 57.143 0.00 0.00 0.00 3.36
236 802 2.650116 GGAGACCTTCCTCGCTGCA 61.650 63.158 0.00 0.00 43.16 4.41
240 806 2.125350 CCTTCCTCGCTGCACTCC 60.125 66.667 0.00 0.00 0.00 3.85
255 821 2.961510 CACTCCTCTCCATCTCTCCAT 58.038 52.381 0.00 0.00 0.00 3.41
279 845 4.143333 ATAGCGTGGCGGCGACTT 62.143 61.111 16.45 0.00 38.18 3.01
283 849 4.717629 CGTGGCGGCGACTTGAGA 62.718 66.667 16.45 0.00 0.00 3.27
284 850 2.811317 GTGGCGGCGACTTGAGAG 60.811 66.667 16.45 0.00 0.00 3.20
285 851 2.989253 TGGCGGCGACTTGAGAGA 60.989 61.111 16.45 0.00 0.00 3.10
286 852 2.202676 GGCGGCGACTTGAGAGAG 60.203 66.667 12.98 0.00 0.00 3.20
291 857 0.738389 GGCGACTTGAGAGAGAGAGG 59.262 60.000 0.00 0.00 0.00 3.69
313 879 3.664240 GGGGGTGTTGTTTCCCTAG 57.336 57.895 0.00 0.00 43.00 3.02
357 923 4.722855 CCGACCGGCCGTTAACGT 62.723 66.667 26.12 14.64 37.74 3.99
359 925 3.174573 GACCGGCCGTTAACGTCG 61.175 66.667 26.12 24.71 37.74 5.12
410 976 3.084579 CCATGTCAGAACGCGCTC 58.915 61.111 5.73 2.65 0.00 5.03
411 977 1.737735 CCATGTCAGAACGCGCTCA 60.738 57.895 12.67 0.33 0.00 4.26
522 1089 0.255890 AGGCCGCTATTGTGATGGTT 59.744 50.000 0.00 0.00 0.00 3.67
606 1173 5.618863 GCGATCGAGATCACATGACTATTCT 60.619 44.000 21.57 0.00 37.69 2.40
786 1354 1.304381 CTCCCACCACCCACCATTG 60.304 63.158 0.00 0.00 0.00 2.82
804 1372 4.338964 CCATTGCCAGATTATTACAGTGCA 59.661 41.667 0.00 0.00 0.00 4.57
978 1549 2.534042 AGGTCTGCCTTCTAGCTACA 57.466 50.000 0.00 0.00 44.18 2.74
990 1561 5.385198 CTTCTAGCTACATCTCCTTCCTCT 58.615 45.833 0.00 0.00 0.00 3.69
997 1568 2.191400 CATCTCCTTCCTCTCCAACCA 58.809 52.381 0.00 0.00 0.00 3.67
1030 1601 1.807886 GCAGCTGGCAAGAAGATGG 59.192 57.895 17.12 0.00 43.97 3.51
1051 1622 3.210227 GGCATAGGAGGAGAGAAAAAGC 58.790 50.000 0.00 0.00 0.00 3.51
1063 1634 3.567585 AGAGAAAAAGCAGCAGAGGAAAC 59.432 43.478 0.00 0.00 0.00 2.78
1115 1686 2.438075 GAGCAGAAGCCAGCCAGG 60.438 66.667 0.00 0.00 43.56 4.45
1124 1695 3.795041 CCAGCCAGGAGGAGCAGG 61.795 72.222 0.00 0.00 41.22 4.85
1128 1699 1.992277 GCCAGGAGGAGCAGGAGAA 60.992 63.158 0.00 0.00 36.89 2.87
1139 1710 3.080319 GAGCAGGAGAAAGCAAGAACAT 58.920 45.455 0.00 0.00 0.00 2.71
1142 1713 3.254166 GCAGGAGAAAGCAAGAACATCAA 59.746 43.478 0.00 0.00 0.00 2.57
1194 1768 2.664402 AAAGGAGTGTCAGCATTGGT 57.336 45.000 0.00 0.00 0.00 3.67
1270 1847 0.107214 CAGGGAAAGCTGCCGGAATA 60.107 55.000 5.05 0.00 38.32 1.75
1271 1848 0.181350 AGGGAAAGCTGCCGGAATAG 59.819 55.000 5.05 0.04 38.32 1.73
1272 1849 1.448119 GGGAAAGCTGCCGGAATAGC 61.448 60.000 5.05 12.00 40.18 2.97
1273 1850 1.448119 GGAAAGCTGCCGGAATAGCC 61.448 60.000 18.43 6.96 40.76 3.93
1274 1851 0.748005 GAAAGCTGCCGGAATAGCCA 60.748 55.000 18.43 0.04 40.76 4.75
1275 1852 0.106519 AAAGCTGCCGGAATAGCCAT 60.107 50.000 18.43 8.43 40.76 4.40
1422 1999 4.112341 GCTACGACGGCGACCACT 62.112 66.667 22.49 0.00 41.64 4.00
1431 2008 2.433318 GCGACCACTGTCAGCTCC 60.433 66.667 0.00 0.00 41.85 4.70
1434 2011 1.594310 GACCACTGTCAGCTCCTCC 59.406 63.158 0.00 0.00 41.37 4.30
1437 2014 1.612395 CCACTGTCAGCTCCTCCTCC 61.612 65.000 0.00 0.00 0.00 4.30
1485 2062 2.718747 TTTCGTCCATCGTTGCCGGT 62.719 55.000 1.90 0.00 40.80 5.28
1733 2310 4.814234 GCAAATCCATTGATGCATGAATGT 59.186 37.500 29.24 14.92 41.85 2.71
1798 2375 2.223923 GGTGGAGATCATCTTCCAGTCG 60.224 54.545 1.76 0.00 32.30 4.18
1862 2439 2.808919 TCGAGAGGATTCTGAAGGTGT 58.191 47.619 0.00 0.00 32.53 4.16
1875 2452 2.125512 GGTGTACAGCTCCGGCAG 60.126 66.667 17.69 0.00 41.70 4.85
1963 2540 4.168291 GCCAGGAGGAGCTTCCCG 62.168 72.222 0.53 0.00 37.19 5.14
2187 2765 6.406093 TTCAGCTTGACAAATTTTGTGTTG 57.594 33.333 19.03 12.53 45.52 3.33
2195 2773 6.565234 TGACAAATTTTGTGTTGGTTATCGT 58.435 32.000 19.03 0.00 45.52 3.73
2364 2954 2.578495 GTCAACAGCAGCAATTCTTCG 58.422 47.619 0.00 0.00 0.00 3.79
2464 3054 4.395854 TGCCTTGCTTTGTAGTGATGTATG 59.604 41.667 0.00 0.00 0.00 2.39
2494 3086 8.432013 TGGCTACTGAGACATAATAATCACATT 58.568 33.333 0.00 0.00 34.97 2.71
2564 3156 5.220681 CCTTAATTCGCTTCTCTTTGTAGCC 60.221 44.000 0.00 0.00 35.96 3.93
2573 3165 2.567615 TCTCTTTGTAGCCCCTCTGTTC 59.432 50.000 0.00 0.00 0.00 3.18
2658 3250 5.726980 TTGGAAATTTCACAGGATTCAGG 57.273 39.130 19.49 0.00 0.00 3.86
2879 3471 2.781945 GCTTGCACCCATAAGCATAC 57.218 50.000 0.95 0.00 46.43 2.39
2950 3542 2.229784 GTCACTTTGGGAGAAGCAATGG 59.770 50.000 0.00 0.00 0.00 3.16
2951 3543 2.108075 TCACTTTGGGAGAAGCAATGGA 59.892 45.455 0.00 0.00 0.00 3.41
2952 3544 2.229784 CACTTTGGGAGAAGCAATGGAC 59.770 50.000 0.00 0.00 0.00 4.02
2953 3545 2.108952 ACTTTGGGAGAAGCAATGGACT 59.891 45.455 0.00 0.00 0.00 3.85
2954 3546 2.205022 TTGGGAGAAGCAATGGACTG 57.795 50.000 0.00 0.00 0.00 3.51
2955 3547 1.067295 TGGGAGAAGCAATGGACTGT 58.933 50.000 0.00 0.00 0.00 3.55
2960 3552 3.055819 GGAGAAGCAATGGACTGTACTGA 60.056 47.826 6.77 0.00 0.00 3.41
2963 3555 4.040952 AGAAGCAATGGACTGTACTGAACT 59.959 41.667 6.77 0.00 0.00 3.01
3033 3625 1.208052 TGCATCCAGCTCAACCTACTC 59.792 52.381 0.00 0.00 45.94 2.59
3034 3626 1.484240 GCATCCAGCTCAACCTACTCT 59.516 52.381 0.00 0.00 41.15 3.24
3035 3627 2.741228 GCATCCAGCTCAACCTACTCTG 60.741 54.545 0.00 0.00 41.15 3.35
3037 3629 0.610174 CCAGCTCAACCTACTCTGCA 59.390 55.000 0.00 0.00 0.00 4.41
3043 3635 5.064452 CAGCTCAACCTACTCTGCAAAATAG 59.936 44.000 0.00 0.00 0.00 1.73
3076 3668 7.830099 TTAGTACTAATCCCAACCTAGCTAC 57.170 40.000 11.38 0.00 0.00 3.58
3078 3670 6.069994 AGTACTAATCCCAACCTAGCTACTC 58.930 44.000 0.00 0.00 0.00 2.59
3081 3673 4.554553 AATCCCAACCTAGCTACTCCTA 57.445 45.455 0.00 0.00 0.00 2.94
3084 3678 3.271490 TCCCAACCTAGCTACTCCTAGTT 59.729 47.826 0.00 0.00 34.34 2.24
3087 3681 5.659971 CCCAACCTAGCTACTCCTAGTTTAA 59.340 44.000 0.00 0.00 34.34 1.52
3096 3690 6.595716 AGCTACTCCTAGTTTAAACAATGCTG 59.404 38.462 20.06 8.08 0.00 4.41
3099 3693 9.431887 CTACTCCTAGTTTAAACAATGCTGTAA 57.568 33.333 20.06 0.00 33.45 2.41
3165 3759 2.554370 TGGTTACCACTTGTACCTGC 57.446 50.000 0.00 0.00 0.00 4.85
3179 3773 9.206870 CACTTGTACCTGCATTTTAATTGAAAT 57.793 29.630 2.50 2.50 0.00 2.17
3199 3793 1.343075 TGGAGGGGCTTAGACAGGTAG 60.343 57.143 0.00 0.00 0.00 3.18
3258 3852 5.221185 CCAAGATTGGTCATGGATCATTGTC 60.221 44.000 3.30 0.00 44.17 3.18
3291 3903 4.169508 CTCTGTACATGGAGAACGACAAG 58.830 47.826 6.31 0.00 0.00 3.16
3354 3966 3.762407 TGAAAAGAAGATCGGTGTCCA 57.238 42.857 0.00 0.00 0.00 4.02
3392 4004 0.811281 GGGTTTGGATTCTTCAGGCG 59.189 55.000 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.636830 CCTGAGACGGATGCATCTTTT 58.363 47.619 25.28 10.46 0.00 2.27
52 59 8.149973 TGGTTTATTTAGATTCTGATAACGCC 57.850 34.615 0.00 6.85 0.00 5.68
144 158 6.150976 TGCTCAAGAACTACATATTTGGGTTG 59.849 38.462 2.70 0.00 0.00 3.77
154 168 2.029020 TCACGCTGCTCAAGAACTACAT 60.029 45.455 0.00 0.00 0.00 2.29
156 170 2.065993 TCACGCTGCTCAAGAACTAC 57.934 50.000 0.00 0.00 0.00 2.73
171 185 5.176407 TGAATTTGTGGGTAAGTTTCACG 57.824 39.130 0.00 0.00 34.43 4.35
172 186 7.973944 GGATATGAATTTGTGGGTAAGTTTCAC 59.026 37.037 0.00 0.00 0.00 3.18
223 237 2.125350 GGAGTGCAGCGAGGAAGG 60.125 66.667 0.00 0.00 0.00 3.46
236 802 2.517553 TCATGGAGAGATGGAGAGGAGT 59.482 50.000 0.00 0.00 0.00 3.85
240 806 2.037511 GCCTTCATGGAGAGATGGAGAG 59.962 54.545 1.24 0.00 38.35 3.20
255 821 2.511373 CGCCACGCTATGCCTTCA 60.511 61.111 0.00 0.00 0.00 3.02
313 879 1.153229 CGGTCGGAATTTCCCCCTC 60.153 63.158 9.87 0.00 31.13 4.30
436 1003 5.126545 ACCGCACAGTAGAATTGACTATGTA 59.873 40.000 0.00 0.00 0.00 2.29
437 1004 4.081642 ACCGCACAGTAGAATTGACTATGT 60.082 41.667 0.00 0.00 0.00 2.29
451 1018 0.031994 GCCAAAAATCACCGCACAGT 59.968 50.000 0.00 0.00 0.00 3.55
453 1020 0.249238 GTGCCAAAAATCACCGCACA 60.249 50.000 5.66 0.00 47.00 4.57
522 1089 5.473504 GGTTTAGGAGAGTGAGATGCAAAAA 59.526 40.000 0.00 0.00 0.00 1.94
583 1150 5.937187 AGAATAGTCATGTGATCTCGATCG 58.063 41.667 9.36 9.36 40.63 3.69
606 1173 3.450817 TGAGATGGCGAATAAACCAGAGA 59.549 43.478 0.00 0.00 39.88 3.10
786 1354 3.689161 TGTGTGCACTGTAATAATCTGGC 59.311 43.478 19.41 0.00 0.00 4.85
804 1372 0.686112 CCCCTTTTGGTGTGGTGTGT 60.686 55.000 0.00 0.00 38.10 3.72
978 1549 2.192263 GTGGTTGGAGAGGAAGGAGAT 58.808 52.381 0.00 0.00 0.00 2.75
990 1561 1.617850 GTTGCATCCATTGTGGTTGGA 59.382 47.619 8.63 3.72 46.86 3.53
1030 1601 3.210227 GCTTTTTCTCTCCTCCTATGCC 58.790 50.000 0.00 0.00 0.00 4.40
1051 1622 1.072965 AGAACCTGGTTTCCTCTGCTG 59.927 52.381 14.28 0.00 0.00 4.41
1115 1686 1.277557 TCTTGCTTTCTCCTGCTCCTC 59.722 52.381 0.00 0.00 0.00 3.71
1124 1695 4.668686 CGCTCTTGATGTTCTTGCTTTCTC 60.669 45.833 0.00 0.00 0.00 2.87
1128 1699 2.740981 CTCGCTCTTGATGTTCTTGCTT 59.259 45.455 0.00 0.00 0.00 3.91
1139 1710 0.805614 CGTCTTCCTCTCGCTCTTGA 59.194 55.000 0.00 0.00 0.00 3.02
1142 1713 1.363145 CGTCGTCTTCCTCTCGCTCT 61.363 60.000 0.00 0.00 0.00 4.09
1274 1851 1.595382 GAGACATTGCGGCCGCTAT 60.595 57.895 45.79 40.84 42.51 2.97
1275 1852 2.202878 GAGACATTGCGGCCGCTA 60.203 61.111 45.79 40.56 42.51 4.26
1293 1870 1.180907 TGAGAGACCTACTGCTGCTG 58.819 55.000 4.89 4.89 0.00 4.41
1422 1999 1.379176 CGAGGAGGAGGAGCTGACA 60.379 63.158 0.00 0.00 0.00 3.58
1431 2008 2.800581 CGACGACGACGAGGAGGAG 61.801 68.421 15.32 0.00 42.66 3.69
1434 2011 4.517703 GCCGACGACGACGAGGAG 62.518 72.222 20.63 5.41 42.66 3.69
1437 2014 3.423077 GAGAGCCGACGACGACGAG 62.423 68.421 20.63 11.66 42.66 4.18
1485 2062 2.039084 GAGCTTCCTGAAAGACCTGGAA 59.961 50.000 0.00 0.00 40.39 3.53
1535 2112 3.649277 CTTGTCCTGGGGTCGAGCG 62.649 68.421 8.77 0.00 0.00 5.03
1711 2288 6.918892 AACATTCATGCATCAATGGATTTG 57.081 33.333 24.68 3.20 36.67 2.32
1733 2310 1.227999 CCGAGCTCCGAAACTGCAAA 61.228 55.000 8.47 0.00 41.76 3.68
1756 2333 1.444553 GTTCCTGCTCGTGTCCTCG 60.445 63.158 0.00 0.00 0.00 4.63
1798 2375 3.708220 CTTCCCGACGAGCCAGCTC 62.708 68.421 9.67 9.67 39.55 4.09
1875 2452 1.935327 CTCGAACCTCTCCACGGTCC 61.935 65.000 0.00 0.00 32.46 4.46
2187 2765 3.637297 GTCGACCCTGACGATAACC 57.363 57.895 3.51 0.00 41.62 2.85
2364 2954 1.188219 TGTCACAGCCAGACTCCTCC 61.188 60.000 0.00 0.00 36.94 4.30
2454 3044 2.768527 AGTAGCCACTGCATACATCACT 59.231 45.455 0.00 0.00 41.13 3.41
2494 3086 1.196012 TACACACCACACCACAGACA 58.804 50.000 0.00 0.00 0.00 3.41
2564 3156 0.392998 CATCAACGGGGAACAGAGGG 60.393 60.000 0.00 0.00 0.00 4.30
2573 3165 2.627515 ACTGATGATCATCAACGGGG 57.372 50.000 32.38 24.00 46.10 5.73
2658 3250 2.297033 TGGTTTGAGATGCTTTCTTGGC 59.703 45.455 0.00 0.00 33.74 4.52
2737 3329 7.445121 CATGGCCTTATTCTCATCTTGTACTA 58.555 38.462 3.32 0.00 0.00 1.82
2738 3330 5.957771 TGGCCTTATTCTCATCTTGTACT 57.042 39.130 3.32 0.00 0.00 2.73
2739 3331 5.049129 GCATGGCCTTATTCTCATCTTGTAC 60.049 44.000 3.32 0.00 0.00 2.90
2879 3471 1.082366 CGCGGAAGAACCCAAAACG 60.082 57.895 0.00 0.00 34.64 3.60
2950 3542 8.041829 TGAGTAATCAGTAGTTCAGTACAGTC 57.958 38.462 0.00 0.00 0.00 3.51
2951 3543 7.997773 TGAGTAATCAGTAGTTCAGTACAGT 57.002 36.000 0.00 0.00 0.00 3.55
2952 3544 9.509855 GATTGAGTAATCAGTAGTTCAGTACAG 57.490 37.037 0.00 0.00 41.86 2.74
2953 3545 9.244292 AGATTGAGTAATCAGTAGTTCAGTACA 57.756 33.333 0.00 0.00 44.14 2.90
2954 3546 9.724839 GAGATTGAGTAATCAGTAGTTCAGTAC 57.275 37.037 0.00 0.00 44.14 2.73
2955 3547 9.688091 AGAGATTGAGTAATCAGTAGTTCAGTA 57.312 33.333 0.00 0.00 44.14 2.74
3053 3645 7.159201 AGTAGCTAGGTTGGGATTAGTACTA 57.841 40.000 0.00 0.00 0.00 1.82
3076 3668 9.959749 TTTTTACAGCATTGTTTAAACTAGGAG 57.040 29.630 18.72 11.44 38.76 3.69
3099 3693 6.161796 AGGGCCTAATTAACCTAGGTTTTT 57.838 37.500 31.47 24.73 38.59 1.94
3165 3759 5.993055 AGCCCCTCCATTTCAATTAAAATG 58.007 37.500 7.03 7.03 43.28 2.32
3179 3773 0.714180 TACCTGTCTAAGCCCCTCCA 59.286 55.000 0.00 0.00 0.00 3.86
3199 3793 1.881973 TGTTCTGGAATCAGCTTGTGC 59.118 47.619 0.00 0.00 40.69 4.57
3258 3852 2.749280 TGTACAGAGCAGGTCACATG 57.251 50.000 1.66 0.00 0.00 3.21
3291 3903 3.393800 TGCTGTAACTGTCTCTTTCAGC 58.606 45.455 0.00 0.00 44.39 4.26
3335 3947 3.399330 TGTGGACACCGATCTTCTTTTC 58.601 45.455 0.00 0.00 0.00 2.29
3336 3948 3.485463 TGTGGACACCGATCTTCTTTT 57.515 42.857 0.00 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.