Multiple sequence alignment - TraesCS4A01G207300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G207300 chr4A 100.000 3323 0 0 1 3323 500628797 500632119 0.000000e+00 6137.0
1 TraesCS4A01G207300 chr4B 91.708 3039 176 34 189 3207 124496019 124499001 0.000000e+00 4146.0
2 TraesCS4A01G207300 chr4B 100.000 28 0 0 3205 3232 68493625 68493598 6.000000e-03 52.8
3 TraesCS4A01G207300 chr4D 95.043 2562 95 16 665 3207 87945160 87947708 0.000000e+00 3999.0
4 TraesCS4A01G207300 chr3A 100.000 195 0 0 1 195 661156083 661155889 8.760000e-96 361.0
5 TraesCS4A01G207300 chr3A 97.129 209 4 2 1 208 183655136 183655343 5.270000e-93 351.0
6 TraesCS4A01G207300 chr3A 100.000 28 0 0 3205 3232 136532881 136532908 6.000000e-03 52.8
7 TraesCS4A01G207300 chr2A 100.000 195 0 0 1 195 597006304 597006498 8.760000e-96 361.0
8 TraesCS4A01G207300 chr1B 99.495 198 1 0 1 198 80092010 80092207 8.760000e-96 361.0
9 TraesCS4A01G207300 chr6B 100.000 194 0 0 1 194 253774994 253775187 3.150000e-95 359.0
10 TraesCS4A01G207300 chr6B 99.000 200 0 2 1 200 287796495 287796692 1.130000e-94 357.0
11 TraesCS4A01G207300 chr6B 99.487 195 1 0 1 195 224485973 224486167 4.080000e-94 355.0
12 TraesCS4A01G207300 chr3B 96.682 211 5 2 1 210 618381246 618381455 1.900000e-92 350.0
13 TraesCS4A01G207300 chr5B 94.619 223 9 3 1 220 216333541 216333763 3.170000e-90 342.0
14 TraesCS4A01G207300 chr2D 81.329 316 51 8 193 504 73464124 73463813 1.980000e-62 250.0
15 TraesCS4A01G207300 chr7D 81.350 311 48 7 202 506 626480412 626480718 9.210000e-61 244.0
16 TraesCS4A01G207300 chr3D 79.688 320 55 9 193 506 190271925 190272240 4.310000e-54 222.0
17 TraesCS4A01G207300 chr3D 95.000 40 2 0 532 571 394628309 394628270 2.770000e-06 63.9
18 TraesCS4A01G207300 chr3D 94.444 36 2 0 3205 3240 517313782 517313747 4.630000e-04 56.5
19 TraesCS4A01G207300 chr1A 80.565 283 50 4 193 473 461738948 461739227 2.600000e-51 213.0
20 TraesCS4A01G207300 chr1A 77.914 326 63 5 193 514 324606793 324607113 9.410000e-46 195.0
21 TraesCS4A01G207300 chr5D 80.970 268 47 3 193 458 456578662 456578397 3.360000e-50 209.0
22 TraesCS4A01G207300 chr5D 76.676 373 77 8 205 570 434036051 434035682 7.270000e-47 198.0
23 TraesCS4A01G207300 chr7B 80.277 289 45 10 204 487 679996798 679996517 1.210000e-49 207.0
24 TraesCS4A01G207300 chr1D 77.500 360 68 9 218 567 258414536 258414892 1.560000e-48 204.0
25 TraesCS4A01G207300 chr1D 94.118 34 2 0 3199 3232 295443035 295443068 6.000000e-03 52.8
26 TraesCS4A01G207300 chr2B 94.595 37 2 0 3204 3240 25849898 25849862 1.290000e-04 58.4
27 TraesCS4A01G207300 chrUn 100.000 30 0 0 3206 3235 86340333 86340304 4.630000e-04 56.5
28 TraesCS4A01G207300 chr6A 96.970 33 1 0 3208 3240 578037123 578037091 4.630000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G207300 chr4A 500628797 500632119 3322 False 6137 6137 100.000 1 3323 1 chr4A.!!$F1 3322
1 TraesCS4A01G207300 chr4B 124496019 124499001 2982 False 4146 4146 91.708 189 3207 1 chr4B.!!$F1 3018
2 TraesCS4A01G207300 chr4D 87945160 87947708 2548 False 3999 3999 95.043 665 3207 1 chr4D.!!$F1 2542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.103208 GACTAGTCATGTCAGCCCGG 59.897 60.0 18.2 0.0 34.80 5.73 F
290 291 0.107703 CCTGAGCCGCCTTCAATGTA 60.108 55.0 0.0 0.0 0.00 2.29 F
933 947 0.179018 GAGCTGAAACACAGGGTGGT 60.179 55.0 0.0 0.0 45.82 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1884 1906 0.627986 CCAATTCTTCCTCCAGGGCT 59.372 55.000 0.00 0.0 35.41 5.19 R
1983 2005 1.071471 CTGCAGAAACTCCCACGGT 59.929 57.895 8.42 0.0 0.00 4.83 R
2769 2792 0.168128 GCCCTTGCATCGTTGTACAC 59.832 55.000 0.00 0.0 37.47 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.650409 GACTAGTCATGTCAGCCCG 57.350 57.895 18.20 0.00 34.80 6.13
19 20 0.103208 GACTAGTCATGTCAGCCCGG 59.897 60.000 18.20 0.00 34.80 5.73
20 21 1.330655 ACTAGTCATGTCAGCCCGGG 61.331 60.000 19.09 19.09 0.00 5.73
21 22 2.650813 CTAGTCATGTCAGCCCGGGC 62.651 65.000 39.29 39.29 42.33 6.13
31 32 3.161557 GCCCGGGCTCCTTATCAT 58.838 61.111 38.76 0.00 38.26 2.45
32 33 2.372852 GCCCGGGCTCCTTATCATA 58.627 57.895 38.76 0.00 38.26 2.15
33 34 0.912486 GCCCGGGCTCCTTATCATAT 59.088 55.000 38.76 0.00 38.26 1.78
34 35 1.407437 GCCCGGGCTCCTTATCATATG 60.407 57.143 38.76 0.00 38.26 1.78
35 36 1.210478 CCCGGGCTCCTTATCATATGG 59.790 57.143 8.08 0.00 0.00 2.74
36 37 2.187958 CCGGGCTCCTTATCATATGGA 58.812 52.381 2.13 0.00 0.00 3.41
37 38 2.774234 CCGGGCTCCTTATCATATGGAT 59.226 50.000 2.13 0.00 40.14 3.41
38 39 3.432749 CCGGGCTCCTTATCATATGGATG 60.433 52.174 2.13 0.00 36.72 3.51
39 40 3.549794 GGGCTCCTTATCATATGGATGC 58.450 50.000 2.13 6.23 36.72 3.91
40 41 3.201708 GGGCTCCTTATCATATGGATGCT 59.798 47.826 2.13 0.00 36.72 3.79
41 42 4.410228 GGGCTCCTTATCATATGGATGCTA 59.590 45.833 2.13 0.00 36.72 3.49
42 43 5.454471 GGGCTCCTTATCATATGGATGCTAG 60.454 48.000 2.13 0.00 36.72 3.42
43 44 5.055812 GCTCCTTATCATATGGATGCTAGC 58.944 45.833 8.10 8.10 36.72 3.42
44 45 5.268118 TCCTTATCATATGGATGCTAGCG 57.732 43.478 10.77 0.00 36.72 4.26
45 46 4.956075 TCCTTATCATATGGATGCTAGCGA 59.044 41.667 10.77 0.00 36.72 4.93
46 47 5.046529 CCTTATCATATGGATGCTAGCGAC 58.953 45.833 10.77 6.33 36.72 5.19
47 48 5.394553 CCTTATCATATGGATGCTAGCGACA 60.395 44.000 10.77 9.20 36.72 4.35
48 49 3.303881 TCATATGGATGCTAGCGACAC 57.696 47.619 10.77 0.81 32.62 3.67
49 50 2.893489 TCATATGGATGCTAGCGACACT 59.107 45.455 10.77 0.00 32.62 3.55
50 51 4.079253 TCATATGGATGCTAGCGACACTA 58.921 43.478 10.77 0.00 32.62 2.74
51 52 4.706962 TCATATGGATGCTAGCGACACTAT 59.293 41.667 10.77 7.20 32.62 2.12
52 53 3.584406 ATGGATGCTAGCGACACTATC 57.416 47.619 10.77 6.09 0.00 2.08
53 54 2.306847 TGGATGCTAGCGACACTATCA 58.693 47.619 10.77 0.00 31.82 2.15
54 55 2.893489 TGGATGCTAGCGACACTATCAT 59.107 45.455 10.77 0.00 39.77 2.45
55 56 4.079253 TGGATGCTAGCGACACTATCATA 58.921 43.478 10.77 0.00 37.73 2.15
56 57 4.706962 TGGATGCTAGCGACACTATCATAT 59.293 41.667 10.77 0.00 37.73 1.78
57 58 5.885912 TGGATGCTAGCGACACTATCATATA 59.114 40.000 10.77 0.00 37.73 0.86
58 59 6.183360 TGGATGCTAGCGACACTATCATATAC 60.183 42.308 10.77 0.00 37.73 1.47
59 60 5.217895 TGCTAGCGACACTATCATATACG 57.782 43.478 10.77 0.00 0.00 3.06
60 61 4.694037 TGCTAGCGACACTATCATATACGT 59.306 41.667 10.77 0.00 0.00 3.57
61 62 5.022653 GCTAGCGACACTATCATATACGTG 58.977 45.833 0.00 0.00 0.00 4.49
62 63 5.163884 GCTAGCGACACTATCATATACGTGA 60.164 44.000 0.00 0.00 0.00 4.35
63 64 5.284428 AGCGACACTATCATATACGTGAG 57.716 43.478 0.00 0.00 0.00 3.51
64 65 3.846896 GCGACACTATCATATACGTGAGC 59.153 47.826 0.00 0.00 0.00 4.26
65 66 4.404324 CGACACTATCATATACGTGAGCC 58.596 47.826 0.00 0.00 0.00 4.70
66 67 4.083484 CGACACTATCATATACGTGAGCCA 60.083 45.833 0.00 0.00 0.00 4.75
67 68 5.562113 CGACACTATCATATACGTGAGCCAA 60.562 44.000 0.00 0.00 0.00 4.52
68 69 6.156748 ACACTATCATATACGTGAGCCAAA 57.843 37.500 0.00 0.00 0.00 3.28
69 70 6.578944 ACACTATCATATACGTGAGCCAAAA 58.421 36.000 0.00 0.00 0.00 2.44
70 71 6.701841 ACACTATCATATACGTGAGCCAAAAG 59.298 38.462 0.00 0.00 0.00 2.27
71 72 6.146184 CACTATCATATACGTGAGCCAAAAGG 59.854 42.308 0.00 0.00 0.00 3.11
72 73 3.202906 TCATATACGTGAGCCAAAAGGC 58.797 45.455 0.00 0.00 0.00 4.35
73 74 1.647346 TATACGTGAGCCAAAAGGCG 58.353 50.000 0.00 0.00 40.23 5.52
74 75 1.644786 ATACGTGAGCCAAAAGGCGC 61.645 55.000 0.00 0.00 40.23 6.53
75 76 2.997952 TACGTGAGCCAAAAGGCGCA 62.998 55.000 10.83 8.86 41.90 6.09
76 77 2.727544 GTGAGCCAAAAGGCGCAA 59.272 55.556 14.31 0.00 45.17 4.85
77 78 1.067250 GTGAGCCAAAAGGCGCAAA 59.933 52.632 14.31 0.00 45.17 3.68
78 79 1.067250 TGAGCCAAAAGGCGCAAAC 59.933 52.632 10.83 0.00 41.28 2.93
79 80 2.016165 GAGCCAAAAGGCGCAAACG 61.016 57.895 10.83 0.00 44.07 3.60
80 81 3.035503 GCCAAAAGGCGCAAACGG 61.036 61.111 10.83 3.45 40.57 4.44
81 82 2.415426 CCAAAAGGCGCAAACGGT 59.585 55.556 10.83 0.00 40.57 4.83
82 83 1.660264 CCAAAAGGCGCAAACGGTC 60.660 57.895 10.83 0.00 40.57 4.79
83 84 1.660264 CAAAAGGCGCAAACGGTCC 60.660 57.895 10.83 0.00 40.57 4.46
84 85 2.852180 AAAAGGCGCAAACGGTCCC 61.852 57.895 10.83 0.00 40.57 4.46
91 92 2.907917 CAAACGGTCCCGGGCAAA 60.908 61.111 18.49 0.00 44.69 3.68
92 93 2.596338 AAACGGTCCCGGGCAAAG 60.596 61.111 18.49 9.68 44.69 2.77
93 94 4.653888 AACGGTCCCGGGCAAAGG 62.654 66.667 18.49 5.40 44.69 3.11
95 96 3.708544 CGGTCCCGGGCAAAGGTA 61.709 66.667 18.49 0.00 35.56 3.08
96 97 2.758434 GGTCCCGGGCAAAGGTAA 59.242 61.111 18.49 0.00 0.00 2.85
97 98 1.378119 GGTCCCGGGCAAAGGTAAG 60.378 63.158 18.49 0.00 0.00 2.34
98 99 1.378119 GTCCCGGGCAAAGGTAAGG 60.378 63.158 18.49 0.00 0.00 2.69
99 100 2.754254 CCCGGGCAAAGGTAAGGC 60.754 66.667 8.08 0.00 0.00 4.35
100 101 3.131478 CCGGGCAAAGGTAAGGCG 61.131 66.667 0.00 0.00 0.00 5.52
101 102 2.046700 CGGGCAAAGGTAAGGCGA 60.047 61.111 0.00 0.00 0.00 5.54
102 103 2.396157 CGGGCAAAGGTAAGGCGAC 61.396 63.158 0.00 0.00 0.00 5.19
103 104 1.302993 GGGCAAAGGTAAGGCGACA 60.303 57.895 0.00 0.00 0.00 4.35
104 105 1.583495 GGGCAAAGGTAAGGCGACAC 61.583 60.000 0.00 0.00 0.00 3.67
105 106 1.583495 GGCAAAGGTAAGGCGACACC 61.583 60.000 0.00 0.00 39.61 4.16
106 107 1.583495 GCAAAGGTAAGGCGACACCC 61.583 60.000 0.00 0.00 40.58 4.61
107 108 1.004200 AAAGGTAAGGCGACACCCG 60.004 57.895 0.00 0.00 40.58 5.28
108 109 1.761500 AAAGGTAAGGCGACACCCGT 61.761 55.000 0.00 0.00 40.58 5.28
109 110 2.433664 GGTAAGGCGACACCCGTG 60.434 66.667 0.00 0.00 40.58 4.94
110 111 2.433664 GTAAGGCGACACCCGTGG 60.434 66.667 0.00 0.00 40.58 4.94
111 112 3.697747 TAAGGCGACACCCGTGGG 61.698 66.667 2.58 2.58 40.58 4.61
128 129 2.585247 GGATACCGTGCGTGAGGC 60.585 66.667 0.00 0.00 43.96 4.70
129 130 2.585247 GATACCGTGCGTGAGGCC 60.585 66.667 0.00 0.00 42.61 5.19
130 131 4.508128 ATACCGTGCGTGAGGCCG 62.508 66.667 0.00 0.00 42.61 6.13
138 139 2.664851 CGTGAGGCCGCAAAGTGA 60.665 61.111 12.05 0.00 0.00 3.41
139 140 2.034879 CGTGAGGCCGCAAAGTGAT 61.035 57.895 12.05 0.00 0.00 3.06
140 141 0.739462 CGTGAGGCCGCAAAGTGATA 60.739 55.000 12.05 0.00 0.00 2.15
141 142 1.668419 GTGAGGCCGCAAAGTGATAT 58.332 50.000 12.05 0.00 0.00 1.63
142 143 1.331756 GTGAGGCCGCAAAGTGATATG 59.668 52.381 12.05 0.00 0.00 1.78
143 144 1.209261 TGAGGCCGCAAAGTGATATGA 59.791 47.619 6.75 0.00 0.00 2.15
144 145 1.869767 GAGGCCGCAAAGTGATATGAG 59.130 52.381 0.00 0.00 0.00 2.90
145 146 0.947244 GGCCGCAAAGTGATATGAGG 59.053 55.000 0.00 0.00 39.25 3.86
146 147 1.668419 GCCGCAAAGTGATATGAGGT 58.332 50.000 0.00 0.00 38.58 3.85
147 148 1.331756 GCCGCAAAGTGATATGAGGTG 59.668 52.381 0.00 0.00 38.58 4.00
148 149 2.632377 CCGCAAAGTGATATGAGGTGT 58.368 47.619 0.00 0.00 32.55 4.16
149 150 3.009723 CCGCAAAGTGATATGAGGTGTT 58.990 45.455 0.00 0.00 32.55 3.32
150 151 4.188462 CCGCAAAGTGATATGAGGTGTTA 58.812 43.478 0.00 0.00 32.55 2.41
151 152 4.034048 CCGCAAAGTGATATGAGGTGTTAC 59.966 45.833 0.00 0.00 32.55 2.50
152 153 4.034048 CGCAAAGTGATATGAGGTGTTACC 59.966 45.833 0.00 0.00 38.99 2.85
153 154 4.034048 GCAAAGTGATATGAGGTGTTACCG 59.966 45.833 0.00 0.00 44.90 4.02
154 155 4.402056 AAGTGATATGAGGTGTTACCGG 57.598 45.455 0.00 0.00 44.90 5.28
155 156 2.102588 AGTGATATGAGGTGTTACCGGC 59.897 50.000 0.00 0.00 44.90 6.13
156 157 2.102588 GTGATATGAGGTGTTACCGGCT 59.897 50.000 0.00 0.00 44.90 5.52
157 158 3.319972 GTGATATGAGGTGTTACCGGCTA 59.680 47.826 0.00 0.00 44.90 3.93
158 159 3.572682 TGATATGAGGTGTTACCGGCTAG 59.427 47.826 0.00 0.00 44.90 3.42
159 160 2.154567 ATGAGGTGTTACCGGCTAGA 57.845 50.000 0.00 0.00 44.90 2.43
160 161 2.154567 TGAGGTGTTACCGGCTAGAT 57.845 50.000 0.00 0.00 44.90 1.98
161 162 2.029623 TGAGGTGTTACCGGCTAGATC 58.970 52.381 0.00 0.00 44.90 2.75
162 163 1.001597 GAGGTGTTACCGGCTAGATCG 60.002 57.143 0.00 0.00 44.90 3.69
163 164 1.027357 GGTGTTACCGGCTAGATCGA 58.973 55.000 0.00 0.00 0.00 3.59
164 165 1.612463 GGTGTTACCGGCTAGATCGAT 59.388 52.381 0.00 0.00 0.00 3.59
165 166 2.607282 GGTGTTACCGGCTAGATCGATG 60.607 54.545 0.54 0.00 0.00 3.84
166 167 2.034305 GTGTTACCGGCTAGATCGATGT 59.966 50.000 0.54 0.00 0.00 3.06
167 168 2.034179 TGTTACCGGCTAGATCGATGTG 59.966 50.000 0.54 0.00 0.00 3.21
168 169 2.265589 TACCGGCTAGATCGATGTGA 57.734 50.000 0.54 0.00 0.00 3.58
169 170 0.669077 ACCGGCTAGATCGATGTGAC 59.331 55.000 0.54 0.00 0.00 3.67
170 171 0.668535 CCGGCTAGATCGATGTGACA 59.331 55.000 0.54 0.00 0.00 3.58
171 172 1.270826 CCGGCTAGATCGATGTGACAT 59.729 52.381 0.54 0.00 0.00 3.06
172 173 2.590073 CGGCTAGATCGATGTGACATC 58.410 52.381 15.36 15.36 0.00 3.06
173 174 2.590073 GGCTAGATCGATGTGACATCG 58.410 52.381 34.77 34.77 42.38 3.84
184 185 2.806237 GACATCGAGTCGGGGTCC 59.194 66.667 20.03 8.02 37.53 4.46
185 186 1.753463 GACATCGAGTCGGGGTCCT 60.753 63.158 20.03 0.00 37.53 3.85
186 187 2.005960 GACATCGAGTCGGGGTCCTG 62.006 65.000 20.03 9.27 37.53 3.86
187 188 1.753078 CATCGAGTCGGGGTCCTGA 60.753 63.158 13.54 0.00 0.00 3.86
264 265 1.129437 GCAAATGAAGTGAGAGGTCGC 59.871 52.381 0.00 0.00 0.00 5.19
270 271 3.735029 GTGAGAGGTCGCGTCCGT 61.735 66.667 16.59 8.32 35.54 4.69
272 273 4.176851 GAGAGGTCGCGTCCGTCC 62.177 72.222 16.59 10.03 41.95 4.79
290 291 0.107703 CCTGAGCCGCCTTCAATGTA 60.108 55.000 0.00 0.00 0.00 2.29
294 295 0.462759 AGCCGCCTTCAATGTAGAGC 60.463 55.000 0.00 0.00 0.00 4.09
320 321 2.693069 GCTCTATAGCGGCATGAATGT 58.307 47.619 1.45 0.00 39.39 2.71
324 325 0.183492 ATAGCGGCATGAATGTGGGT 59.817 50.000 1.45 0.00 0.00 4.51
326 327 0.464373 AGCGGCATGAATGTGGGTAG 60.464 55.000 1.45 0.00 0.00 3.18
329 330 1.027357 GGCATGAATGTGGGTAGCTG 58.973 55.000 0.00 0.00 0.00 4.24
344 345 4.794648 CTGGCGCCGGATGGGAAA 62.795 66.667 32.31 2.65 38.47 3.13
349 350 4.193334 GCCGGATGGGAAAAGCGC 62.193 66.667 5.05 0.00 38.47 5.92
352 353 3.439540 GGATGGGAAAAGCGCGCA 61.440 61.111 35.10 11.28 0.00 6.09
358 359 2.325082 GGAAAAGCGCGCAGAAGGA 61.325 57.895 35.10 0.00 0.00 3.36
361 362 2.731691 AAAAGCGCGCAGAAGGAGGA 62.732 55.000 35.10 0.00 0.00 3.71
367 368 1.219393 CGCAGAAGGAGGAAGGGAC 59.781 63.158 0.00 0.00 0.00 4.46
381 382 1.908299 GGGACTTTTGGTGGGCCAG 60.908 63.158 6.40 0.00 46.91 4.85
396 399 3.953775 CAGGGTGGTCAAGCGGGT 61.954 66.667 0.00 0.00 0.00 5.28
400 403 2.561037 GGTGGTCAAGCGGGTTTGG 61.561 63.158 0.00 0.00 0.00 3.28
401 404 2.203422 TGGTCAAGCGGGTTTGGG 60.203 61.111 0.00 0.00 0.00 4.12
402 405 2.114411 GGTCAAGCGGGTTTGGGA 59.886 61.111 0.00 0.00 0.00 4.37
416 419 3.593794 GGGATCGGTCCGGACTCG 61.594 72.222 32.52 30.33 46.09 4.18
417 420 2.827642 GGATCGGTCCGGACTCGT 60.828 66.667 32.52 21.92 34.13 4.18
418 421 2.408022 GATCGGTCCGGACTCGTG 59.592 66.667 32.52 19.79 33.95 4.35
423 426 1.595929 GGTCCGGACTCGTGCAAAA 60.596 57.895 32.52 0.00 33.95 2.44
425 428 0.878961 GTCCGGACTCGTGCAAAACT 60.879 55.000 27.64 0.00 33.95 2.66
426 429 0.599204 TCCGGACTCGTGCAAAACTC 60.599 55.000 0.00 0.00 33.95 3.01
427 430 0.600255 CCGGACTCGTGCAAAACTCT 60.600 55.000 0.00 0.00 33.95 3.24
432 435 0.868406 CTCGTGCAAAACTCTCCCAC 59.132 55.000 0.00 0.00 0.00 4.61
443 446 0.679505 CTCTCCCACGTTTGTCTCCA 59.320 55.000 0.00 0.00 0.00 3.86
450 453 2.220133 CCACGTTTGTCTCCAGTTTACG 59.780 50.000 0.00 0.00 0.00 3.18
466 469 3.475774 CGGGAGAAAACGCGTCCG 61.476 66.667 14.44 16.91 40.39 4.79
469 472 1.623973 GGGAGAAAACGCGTCCGAAG 61.624 60.000 14.44 0.00 38.29 3.79
479 482 3.482783 GTCCGAAGCGCTGCAGAC 61.483 66.667 20.43 15.90 0.00 3.51
480 483 4.742201 TCCGAAGCGCTGCAGACC 62.742 66.667 20.43 6.94 0.00 3.85
483 486 2.437359 GAAGCGCTGCAGACCCAT 60.437 61.111 20.43 0.00 0.00 4.00
484 487 1.153369 GAAGCGCTGCAGACCCATA 60.153 57.895 20.43 0.00 0.00 2.74
485 488 1.432270 GAAGCGCTGCAGACCCATAC 61.432 60.000 20.43 0.00 0.00 2.39
486 489 2.125147 GCGCTGCAGACCCATACA 60.125 61.111 20.43 0.00 0.00 2.29
487 490 1.745115 GCGCTGCAGACCCATACAA 60.745 57.895 20.43 0.00 0.00 2.41
488 491 1.305219 GCGCTGCAGACCCATACAAA 61.305 55.000 20.43 0.00 0.00 2.83
489 492 1.164411 CGCTGCAGACCCATACAAAA 58.836 50.000 20.43 0.00 0.00 2.44
491 494 2.223340 CGCTGCAGACCCATACAAAATC 60.223 50.000 20.43 0.00 0.00 2.17
494 497 2.746904 TGCAGACCCATACAAAATCGTG 59.253 45.455 0.00 0.00 0.00 4.35
506 509 3.069443 ACAAAATCGTGTTGGATGGCTTT 59.931 39.130 0.00 0.00 0.00 3.51
508 511 2.198827 ATCGTGTTGGATGGCTTTCA 57.801 45.000 0.00 0.00 0.00 2.69
511 514 1.135315 CGTGTTGGATGGCTTTCATGG 60.135 52.381 0.00 0.00 35.97 3.66
513 516 2.094545 GTGTTGGATGGCTTTCATGGTC 60.095 50.000 0.00 0.00 35.97 4.02
514 517 2.225091 TGTTGGATGGCTTTCATGGTCT 60.225 45.455 0.00 0.00 35.97 3.85
515 518 3.010027 TGTTGGATGGCTTTCATGGTCTA 59.990 43.478 0.00 0.00 35.97 2.59
518 521 4.870636 TGGATGGCTTTCATGGTCTAAAT 58.129 39.130 0.00 0.00 35.97 1.40
520 523 6.430864 TGGATGGCTTTCATGGTCTAAATAA 58.569 36.000 0.00 0.00 35.97 1.40
525 528 5.448632 GGCTTTCATGGTCTAAATAACACGG 60.449 44.000 0.00 0.00 0.00 4.94
527 530 6.349033 GCTTTCATGGTCTAAATAACACGGTT 60.349 38.462 0.00 0.00 0.00 4.44
529 532 4.865925 TCATGGTCTAAATAACACGGTTCG 59.134 41.667 0.00 0.00 0.00 3.95
530 533 4.255833 TGGTCTAAATAACACGGTTCGT 57.744 40.909 0.00 0.00 42.36 3.85
532 535 5.964758 TGGTCTAAATAACACGGTTCGTAT 58.035 37.500 0.00 0.00 38.32 3.06
534 537 5.232838 GGTCTAAATAACACGGTTCGTATGG 59.767 44.000 0.00 0.00 38.32 2.74
535 538 5.807011 GTCTAAATAACACGGTTCGTATGGT 59.193 40.000 0.00 0.00 38.32 3.55
538 541 0.869730 AACACGGTTCGTATGGTTGC 59.130 50.000 0.00 0.00 38.32 4.17
550 553 1.915141 ATGGTTGCAGGAGGTTTGAG 58.085 50.000 0.00 0.00 0.00 3.02
551 554 0.843309 TGGTTGCAGGAGGTTTGAGA 59.157 50.000 0.00 0.00 0.00 3.27
554 557 2.576615 GTTGCAGGAGGTTTGAGAGTT 58.423 47.619 0.00 0.00 0.00 3.01
559 562 0.250338 GGAGGTTTGAGAGTTGGCGT 60.250 55.000 0.00 0.00 0.00 5.68
568 571 2.094182 TGAGAGTTGGCGTTGGAGATAC 60.094 50.000 0.00 0.00 0.00 2.24
588 596 8.102484 AGATACCAAGAAAAGAAATAGCCCTA 57.898 34.615 0.00 0.00 0.00 3.53
605 613 1.539388 CCTAGCTATCGTGCTCTCCAG 59.461 57.143 0.00 0.00 42.97 3.86
619 627 0.321387 CTCCAGCTCGGCATATGCAT 60.321 55.000 28.07 3.79 44.36 3.96
620 628 0.604511 TCCAGCTCGGCATATGCATG 60.605 55.000 28.07 19.49 44.36 4.06
621 629 0.887836 CCAGCTCGGCATATGCATGT 60.888 55.000 28.07 0.00 44.36 3.21
651 659 3.375922 TGAGCATGGCATATGCATATTCG 59.624 43.478 28.07 7.97 46.77 3.34
652 660 3.349927 AGCATGGCATATGCATATTCGT 58.650 40.909 28.07 9.66 46.77 3.85
653 661 4.516323 AGCATGGCATATGCATATTCGTA 58.484 39.130 28.07 5.55 46.77 3.43
654 662 4.573607 AGCATGGCATATGCATATTCGTAG 59.426 41.667 28.07 6.55 46.77 3.51
655 663 4.260907 GCATGGCATATGCATATTCGTAGG 60.261 45.833 28.07 7.77 44.00 3.18
656 664 3.270027 TGGCATATGCATATTCGTAGGC 58.730 45.455 28.07 16.43 44.36 3.93
657 665 2.614057 GGCATATGCATATTCGTAGGCC 59.386 50.000 28.07 21.13 44.66 5.19
658 666 3.270027 GCATATGCATATTCGTAGGCCA 58.730 45.455 22.84 0.00 41.59 5.36
659 667 3.063997 GCATATGCATATTCGTAGGCCAC 59.936 47.826 22.84 0.00 41.59 5.01
660 668 2.928801 ATGCATATTCGTAGGCCACA 57.071 45.000 5.01 0.00 0.00 4.17
661 669 2.700722 TGCATATTCGTAGGCCACAA 57.299 45.000 5.01 0.00 0.00 3.33
662 670 3.207265 TGCATATTCGTAGGCCACAAT 57.793 42.857 5.01 6.83 0.00 2.71
663 671 3.138304 TGCATATTCGTAGGCCACAATC 58.862 45.455 5.01 0.00 0.00 2.67
673 681 4.319622 CGTAGGCCACAATCAAACGTTAAA 60.320 41.667 5.01 0.00 0.00 1.52
675 683 4.805219 AGGCCACAATCAAACGTTAAATC 58.195 39.130 5.01 0.00 0.00 2.17
684 692 8.287503 ACAATCAAACGTTAAATCTTAGGTCAC 58.712 33.333 0.00 0.00 0.00 3.67
764 777 2.671963 GGGAAGTTGGCGGTGGAC 60.672 66.667 0.00 0.00 0.00 4.02
794 807 4.124351 CGTAGAACGCCGGCTCCA 62.124 66.667 26.68 1.52 33.65 3.86
885 899 0.546598 ACAAAATAGCCCCTCCCGAG 59.453 55.000 0.00 0.00 0.00 4.63
933 947 0.179018 GAGCTGAAACACAGGGTGGT 60.179 55.000 0.00 0.00 45.82 4.16
1161 1183 2.444706 CTCGCCTCCATCCTCCCA 60.445 66.667 0.00 0.00 0.00 4.37
1419 1441 3.606662 GCGCTCCCATCCTCGCTA 61.607 66.667 0.00 0.00 43.70 4.26
1716 1738 0.933509 CGTACTACGCCAAGATCGCC 60.934 60.000 0.00 0.00 33.65 5.54
1884 1906 2.042842 TGCTGAGAATGGGAATGGGAAA 59.957 45.455 0.00 0.00 0.00 3.13
1909 1931 1.895131 TGGAGGAAGAATTGGCAAAGC 59.105 47.619 3.01 0.00 0.00 3.51
1912 1934 2.821969 GAGGAAGAATTGGCAAAGCTGA 59.178 45.455 3.01 0.00 0.00 4.26
1995 2017 1.003718 GCAGCTACCGTGGGAGTTT 60.004 57.895 0.00 0.00 0.00 2.66
2196 2218 2.360350 GCCAAGGCAGCAGCTGTA 60.360 61.111 23.60 0.00 41.70 2.74
2223 2245 2.900546 CTCCGGAATAATGGTAGCCTCT 59.099 50.000 5.23 0.00 0.00 3.69
2256 2278 2.755876 ACCGCATCGAGCTCCAGA 60.756 61.111 8.47 0.22 42.61 3.86
2289 2311 2.477176 AAACACGCCGAGCAAGCAA 61.477 52.632 0.00 0.00 0.00 3.91
2352 2374 4.695396 TGCTCTGCATTTTGTGAAATTGT 58.305 34.783 0.00 0.00 33.25 2.71
2418 2440 3.764885 AGATTGTTTGTTATGGCTCGC 57.235 42.857 0.00 0.00 0.00 5.03
2421 2443 3.717400 TTGTTTGTTATGGCTCGCAAA 57.283 38.095 0.00 0.00 0.00 3.68
2499 2521 8.999431 CCAACTCTGTATTGTATGTTAACTTGT 58.001 33.333 7.22 0.00 0.00 3.16
2593 2616 3.007398 GTGAGGAGATTCAGTTGGAGTGT 59.993 47.826 0.00 0.00 0.00 3.55
2599 2622 6.097554 AGGAGATTCAGTTGGAGTGTATACTG 59.902 42.308 4.17 0.00 37.25 2.74
2603 2626 5.147330 TCAGTTGGAGTGTATACTGTTGG 57.853 43.478 4.17 0.00 39.16 3.77
2739 2762 8.974060 TGAAACAGTAGGAGAGTTTTGTAATT 57.026 30.769 0.00 0.00 35.77 1.40
2812 2835 7.872483 GGCAGTTAAAAATGATCAAAAGAAGGA 59.128 33.333 0.00 0.00 0.00 3.36
2837 2860 3.181499 ACAGGTTGATTCGTAGCTACTCG 60.181 47.826 21.20 9.73 0.00 4.18
2850 2873 5.464722 CGTAGCTACTCGGTTTCTGATAGTA 59.535 44.000 21.20 0.00 0.00 1.82
2851 2874 6.346758 CGTAGCTACTCGGTTTCTGATAGTAG 60.347 46.154 21.20 0.00 41.56 2.57
2852 2875 5.438833 AGCTACTCGGTTTCTGATAGTAGT 58.561 41.667 0.00 0.00 41.00 2.73
2853 2876 6.590068 AGCTACTCGGTTTCTGATAGTAGTA 58.410 40.000 0.00 0.00 41.00 1.82
2854 2877 7.225725 AGCTACTCGGTTTCTGATAGTAGTAT 58.774 38.462 0.00 0.00 41.00 2.12
2855 2878 7.388500 AGCTACTCGGTTTCTGATAGTAGTATC 59.612 40.741 10.22 10.22 41.00 2.24
2856 2879 7.172875 GCTACTCGGTTTCTGATAGTAGTATCA 59.827 40.741 17.44 17.44 42.38 2.15
2895 2922 7.659390 ACTTGCTAGTAGATGGATTGAATAAGC 59.341 37.037 0.00 0.00 31.21 3.09
2924 2951 2.582172 TCCAGGGACATGTTGGATGATT 59.418 45.455 12.78 0.00 36.13 2.57
2971 2998 9.558396 CTTTCTGCTTTCTTCTATGGAGATATT 57.442 33.333 0.00 0.00 0.00 1.28
3174 3201 6.808829 TGCCCATCTTCACAAATTCATAATC 58.191 36.000 0.00 0.00 0.00 1.75
3207 3234 9.624697 TGTTTTCACTTGAAGCATGATTTATAC 57.375 29.630 0.00 0.00 35.21 1.47
3208 3235 9.846248 GTTTTCACTTGAAGCATGATTTATACT 57.154 29.630 0.00 0.00 35.21 2.12
3210 3237 7.792374 TCACTTGAAGCATGATTTATACTCC 57.208 36.000 0.00 0.00 0.00 3.85
3211 3238 6.767902 TCACTTGAAGCATGATTTATACTCCC 59.232 38.462 0.00 0.00 0.00 4.30
3212 3239 6.769822 CACTTGAAGCATGATTTATACTCCCT 59.230 38.462 0.00 0.00 0.00 4.20
3213 3240 6.995091 ACTTGAAGCATGATTTATACTCCCTC 59.005 38.462 0.00 0.00 0.00 4.30
3214 3241 6.753913 TGAAGCATGATTTATACTCCCTCT 57.246 37.500 0.00 0.00 0.00 3.69
3215 3242 6.528321 TGAAGCATGATTTATACTCCCTCTG 58.472 40.000 0.00 0.00 0.00 3.35
3216 3243 6.100279 TGAAGCATGATTTATACTCCCTCTGT 59.900 38.462 0.00 0.00 0.00 3.41
3217 3244 6.107901 AGCATGATTTATACTCCCTCTGTC 57.892 41.667 0.00 0.00 0.00 3.51
3218 3245 5.012561 AGCATGATTTATACTCCCTCTGTCC 59.987 44.000 0.00 0.00 0.00 4.02
3219 3246 5.012561 GCATGATTTATACTCCCTCTGTCCT 59.987 44.000 0.00 0.00 0.00 3.85
3220 3247 6.462500 CATGATTTATACTCCCTCTGTCCTG 58.538 44.000 0.00 0.00 0.00 3.86
3221 3248 5.777449 TGATTTATACTCCCTCTGTCCTGA 58.223 41.667 0.00 0.00 0.00 3.86
3222 3249 6.202331 TGATTTATACTCCCTCTGTCCTGAA 58.798 40.000 0.00 0.00 0.00 3.02
3223 3250 6.846505 TGATTTATACTCCCTCTGTCCTGAAT 59.153 38.462 0.00 0.00 0.00 2.57
3224 3251 7.348274 TGATTTATACTCCCTCTGTCCTGAATT 59.652 37.037 0.00 0.00 0.00 2.17
3225 3252 8.798975 ATTTATACTCCCTCTGTCCTGAATTA 57.201 34.615 0.00 0.00 0.00 1.40
3226 3253 7.598759 TTATACTCCCTCTGTCCTGAATTAC 57.401 40.000 0.00 0.00 0.00 1.89
3227 3254 4.067944 ACTCCCTCTGTCCTGAATTACT 57.932 45.455 0.00 0.00 0.00 2.24
3228 3255 4.430441 ACTCCCTCTGTCCTGAATTACTT 58.570 43.478 0.00 0.00 0.00 2.24
3229 3256 4.223923 ACTCCCTCTGTCCTGAATTACTTG 59.776 45.833 0.00 0.00 0.00 3.16
3230 3257 4.168101 TCCCTCTGTCCTGAATTACTTGT 58.832 43.478 0.00 0.00 0.00 3.16
3231 3258 4.223032 TCCCTCTGTCCTGAATTACTTGTC 59.777 45.833 0.00 0.00 0.00 3.18
3232 3259 4.177026 CCTCTGTCCTGAATTACTTGTCG 58.823 47.826 0.00 0.00 0.00 4.35
3233 3260 3.585862 TCTGTCCTGAATTACTTGTCGC 58.414 45.455 0.00 0.00 0.00 5.19
3234 3261 3.006430 TCTGTCCTGAATTACTTGTCGCA 59.994 43.478 0.00 0.00 0.00 5.10
3235 3262 3.325870 TGTCCTGAATTACTTGTCGCAG 58.674 45.455 0.00 0.00 0.00 5.18
3236 3263 3.006430 TGTCCTGAATTACTTGTCGCAGA 59.994 43.478 0.00 0.00 0.00 4.26
3237 3264 3.614616 GTCCTGAATTACTTGTCGCAGAG 59.385 47.826 0.00 0.00 36.95 3.35
3238 3265 3.509967 TCCTGAATTACTTGTCGCAGAGA 59.490 43.478 0.00 0.00 36.95 3.10
3239 3266 4.160439 TCCTGAATTACTTGTCGCAGAGAT 59.840 41.667 0.00 0.00 36.95 2.75
3240 3267 4.872691 CCTGAATTACTTGTCGCAGAGATT 59.127 41.667 0.00 0.00 36.95 2.40
3241 3268 5.006165 CCTGAATTACTTGTCGCAGAGATTC 59.994 44.000 0.00 0.00 36.95 2.52
3242 3269 5.478407 TGAATTACTTGTCGCAGAGATTCA 58.522 37.500 0.00 0.00 36.95 2.57
3243 3270 6.108687 TGAATTACTTGTCGCAGAGATTCAT 58.891 36.000 0.00 0.00 36.95 2.57
3244 3271 6.595326 TGAATTACTTGTCGCAGAGATTCATT 59.405 34.615 0.00 0.00 36.95 2.57
3245 3272 6.992063 ATTACTTGTCGCAGAGATTCATTT 57.008 33.333 0.00 0.00 36.95 2.32
3246 3273 4.935885 ACTTGTCGCAGAGATTCATTTC 57.064 40.909 0.00 0.00 36.95 2.17
3247 3274 3.686726 ACTTGTCGCAGAGATTCATTTCC 59.313 43.478 0.00 0.00 36.95 3.13
3248 3275 2.270923 TGTCGCAGAGATTCATTTCCG 58.729 47.619 0.00 0.00 36.95 4.30
3249 3276 1.004504 GTCGCAGAGATTCATTTCCGC 60.005 52.381 0.00 0.00 36.95 5.54
3250 3277 1.009078 CGCAGAGATTCATTTCCGCA 58.991 50.000 0.00 0.00 0.00 5.69
3251 3278 1.267732 CGCAGAGATTCATTTCCGCAC 60.268 52.381 0.00 0.00 0.00 5.34
3252 3279 2.012673 GCAGAGATTCATTTCCGCACT 58.987 47.619 0.00 0.00 0.00 4.40
3253 3280 3.198068 GCAGAGATTCATTTCCGCACTA 58.802 45.455 0.00 0.00 0.00 2.74
3254 3281 3.247173 GCAGAGATTCATTTCCGCACTAG 59.753 47.826 0.00 0.00 0.00 2.57
3255 3282 4.437239 CAGAGATTCATTTCCGCACTAGT 58.563 43.478 0.00 0.00 0.00 2.57
3256 3283 4.872691 CAGAGATTCATTTCCGCACTAGTT 59.127 41.667 0.00 0.00 0.00 2.24
3257 3284 6.042777 CAGAGATTCATTTCCGCACTAGTTA 58.957 40.000 0.00 0.00 0.00 2.24
3258 3285 6.535150 CAGAGATTCATTTCCGCACTAGTTAA 59.465 38.462 0.00 0.00 0.00 2.01
3259 3286 7.225538 CAGAGATTCATTTCCGCACTAGTTAAT 59.774 37.037 0.00 0.00 0.00 1.40
3260 3287 7.770897 AGAGATTCATTTCCGCACTAGTTAATT 59.229 33.333 0.00 0.00 0.00 1.40
3261 3288 7.920738 AGATTCATTTCCGCACTAGTTAATTC 58.079 34.615 0.00 0.00 0.00 2.17
3262 3289 5.712217 TCATTTCCGCACTAGTTAATTCG 57.288 39.130 0.00 0.00 0.00 3.34
3263 3290 4.569162 TCATTTCCGCACTAGTTAATTCGG 59.431 41.667 0.00 1.88 38.34 4.30
3264 3291 2.589798 TCCGCACTAGTTAATTCGGG 57.410 50.000 13.69 2.74 37.65 5.14
3265 3292 1.137479 TCCGCACTAGTTAATTCGGGG 59.863 52.381 13.69 10.09 37.65 5.73
3266 3293 0.935196 CGCACTAGTTAATTCGGGGC 59.065 55.000 0.00 0.00 0.00 5.80
3267 3294 0.935196 GCACTAGTTAATTCGGGGCG 59.065 55.000 0.00 0.00 0.00 6.13
3268 3295 1.578583 CACTAGTTAATTCGGGGCGG 58.421 55.000 0.00 0.00 0.00 6.13
3269 3296 1.137479 CACTAGTTAATTCGGGGCGGA 59.863 52.381 0.00 0.00 0.00 5.54
3270 3297 1.411612 ACTAGTTAATTCGGGGCGGAG 59.588 52.381 0.00 0.00 0.00 4.63
3271 3298 0.754472 TAGTTAATTCGGGGCGGAGG 59.246 55.000 0.00 0.00 0.00 4.30
3272 3299 1.525306 GTTAATTCGGGGCGGAGGG 60.525 63.158 0.00 0.00 0.00 4.30
3273 3300 1.689932 TTAATTCGGGGCGGAGGGA 60.690 57.895 0.00 0.00 0.00 4.20
3274 3301 1.692173 TTAATTCGGGGCGGAGGGAG 61.692 60.000 0.00 0.00 0.00 4.30
3275 3302 2.884179 TAATTCGGGGCGGAGGGAGT 62.884 60.000 0.00 0.00 0.00 3.85
3276 3303 2.884179 AATTCGGGGCGGAGGGAGTA 62.884 60.000 0.00 0.00 0.00 2.59
3277 3304 4.517934 TCGGGGCGGAGGGAGTAG 62.518 72.222 0.00 0.00 0.00 2.57
3278 3305 4.835891 CGGGGCGGAGGGAGTAGT 62.836 72.222 0.00 0.00 0.00 2.73
3279 3306 2.605299 GGGGCGGAGGGAGTAGTA 59.395 66.667 0.00 0.00 0.00 1.82
3280 3307 1.531128 GGGGCGGAGGGAGTAGTAG 60.531 68.421 0.00 0.00 0.00 2.57
3281 3308 1.229643 GGGCGGAGGGAGTAGTAGT 59.770 63.158 0.00 0.00 0.00 2.73
3282 3309 0.396835 GGGCGGAGGGAGTAGTAGTT 60.397 60.000 0.00 0.00 0.00 2.24
3283 3310 1.133668 GGGCGGAGGGAGTAGTAGTTA 60.134 57.143 0.00 0.00 0.00 2.24
3284 3311 2.659428 GGCGGAGGGAGTAGTAGTTAA 58.341 52.381 0.00 0.00 0.00 2.01
3285 3312 3.026694 GGCGGAGGGAGTAGTAGTTAAA 58.973 50.000 0.00 0.00 0.00 1.52
3286 3313 3.448660 GGCGGAGGGAGTAGTAGTTAAAA 59.551 47.826 0.00 0.00 0.00 1.52
3287 3314 4.081476 GGCGGAGGGAGTAGTAGTTAAAAA 60.081 45.833 0.00 0.00 0.00 1.94
3288 3315 5.107824 GCGGAGGGAGTAGTAGTTAAAAAG 58.892 45.833 0.00 0.00 0.00 2.27
3289 3316 5.337089 GCGGAGGGAGTAGTAGTTAAAAAGT 60.337 44.000 0.00 0.00 0.00 2.66
3290 3317 6.098017 CGGAGGGAGTAGTAGTTAAAAAGTG 58.902 44.000 0.00 0.00 0.00 3.16
3291 3318 6.294955 CGGAGGGAGTAGTAGTTAAAAAGTGT 60.295 42.308 0.00 0.00 0.00 3.55
3292 3319 7.448420 GGAGGGAGTAGTAGTTAAAAAGTGTT 58.552 38.462 0.00 0.00 0.00 3.32
3293 3320 8.588472 GGAGGGAGTAGTAGTTAAAAAGTGTTA 58.412 37.037 0.00 0.00 0.00 2.41
3294 3321 9.636879 GAGGGAGTAGTAGTTAAAAAGTGTTAG 57.363 37.037 0.00 0.00 0.00 2.34
3295 3322 9.372189 AGGGAGTAGTAGTTAAAAAGTGTTAGA 57.628 33.333 0.00 0.00 0.00 2.10
3296 3323 9.987272 GGGAGTAGTAGTTAAAAAGTGTTAGAA 57.013 33.333 0.00 0.00 0.00 2.10
3302 3329 9.338622 AGTAGTTAAAAAGTGTTAGAATGCACT 57.661 29.630 0.00 0.00 46.61 4.40
3309 3336 9.626045 AAAAAGTGTTAGAATGCACTAATTAGC 57.374 29.630 12.54 1.01 44.21 3.09
3310 3337 8.567285 AAAGTGTTAGAATGCACTAATTAGCT 57.433 30.769 12.54 3.18 44.21 3.32
3311 3338 7.545362 AGTGTTAGAATGCACTAATTAGCTG 57.455 36.000 12.54 10.68 43.30 4.24
3312 3339 6.037610 AGTGTTAGAATGCACTAATTAGCTGC 59.962 38.462 22.55 22.55 43.30 5.25
3313 3340 6.037610 GTGTTAGAATGCACTAATTAGCTGCT 59.962 38.462 26.17 7.57 35.32 4.24
3314 3341 6.037500 TGTTAGAATGCACTAATTAGCTGCTG 59.962 38.462 26.17 14.97 35.32 4.41
3315 3342 3.314635 AGAATGCACTAATTAGCTGCTGC 59.685 43.478 26.17 21.46 40.05 5.25
3316 3343 2.112380 TGCACTAATTAGCTGCTGCA 57.888 45.000 26.17 23.08 42.74 4.41
3317 3344 2.646930 TGCACTAATTAGCTGCTGCAT 58.353 42.857 26.17 1.05 42.74 3.96
3318 3345 2.356695 TGCACTAATTAGCTGCTGCATG 59.643 45.455 26.17 13.12 42.74 4.06
3319 3346 2.615447 GCACTAATTAGCTGCTGCATGA 59.385 45.455 22.27 3.29 42.74 3.07
3320 3347 3.303857 GCACTAATTAGCTGCTGCATGAG 60.304 47.826 22.27 9.18 42.74 2.90
3321 3348 3.250280 CACTAATTAGCTGCTGCATGAGG 59.750 47.826 18.42 5.77 42.74 3.86
3322 3349 1.030457 AATTAGCTGCTGCATGAGGC 58.970 50.000 18.42 2.70 42.74 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.103208 CCGGGCTGACATGACTAGTC 59.897 60.000 16.32 16.32 36.55 2.59
1 2 1.330655 CCCGGGCTGACATGACTAGT 61.331 60.000 8.08 0.00 0.00 2.57
2 3 1.443407 CCCGGGCTGACATGACTAG 59.557 63.158 8.08 0.00 0.00 2.57
3 4 2.731571 GCCCGGGCTGACATGACTA 61.732 63.158 38.76 0.00 38.26 2.59
4 5 4.101448 GCCCGGGCTGACATGACT 62.101 66.667 38.76 0.00 38.26 3.41
14 15 0.912486 ATATGATAAGGAGCCCGGGC 59.088 55.000 39.29 39.29 42.33 6.13
15 16 1.210478 CCATATGATAAGGAGCCCGGG 59.790 57.143 19.09 19.09 0.00 5.73
16 17 2.187958 TCCATATGATAAGGAGCCCGG 58.812 52.381 3.65 0.00 0.00 5.73
17 18 3.801698 CATCCATATGATAAGGAGCCCG 58.198 50.000 3.65 0.00 34.84 6.13
18 19 3.201708 AGCATCCATATGATAAGGAGCCC 59.798 47.826 3.65 0.00 34.84 5.19
19 20 4.500499 AGCATCCATATGATAAGGAGCC 57.500 45.455 3.65 0.00 34.84 4.70
20 21 5.055812 GCTAGCATCCATATGATAAGGAGC 58.944 45.833 10.63 6.37 33.75 4.70
21 22 5.068329 TCGCTAGCATCCATATGATAAGGAG 59.932 44.000 16.45 0.00 33.75 3.69
22 23 4.956075 TCGCTAGCATCCATATGATAAGGA 59.044 41.667 16.45 0.00 33.75 3.36
23 24 5.046529 GTCGCTAGCATCCATATGATAAGG 58.953 45.833 16.45 0.00 33.75 2.69
24 25 5.518128 GTGTCGCTAGCATCCATATGATAAG 59.482 44.000 16.45 0.00 33.75 1.73
25 26 5.185828 AGTGTCGCTAGCATCCATATGATAA 59.814 40.000 16.45 0.00 33.75 1.75
26 27 4.706962 AGTGTCGCTAGCATCCATATGATA 59.293 41.667 16.45 0.00 34.84 2.15
27 28 3.513119 AGTGTCGCTAGCATCCATATGAT 59.487 43.478 16.45 0.00 34.84 2.45
28 29 2.893489 AGTGTCGCTAGCATCCATATGA 59.107 45.455 16.45 0.00 34.84 2.15
29 30 3.309961 AGTGTCGCTAGCATCCATATG 57.690 47.619 16.45 0.00 36.09 1.78
30 31 4.706962 TGATAGTGTCGCTAGCATCCATAT 59.293 41.667 16.45 6.97 40.72 1.78
31 32 4.079253 TGATAGTGTCGCTAGCATCCATA 58.921 43.478 16.45 1.98 40.72 2.74
32 33 2.893489 TGATAGTGTCGCTAGCATCCAT 59.107 45.455 16.45 0.00 40.72 3.41
33 34 2.306847 TGATAGTGTCGCTAGCATCCA 58.693 47.619 16.45 4.65 40.72 3.41
38 39 5.022653 CACGTATATGATAGTGTCGCTAGC 58.977 45.833 4.06 4.06 36.67 3.42
39 40 6.404712 TCACGTATATGATAGTGTCGCTAG 57.595 41.667 0.00 0.00 36.16 3.42
40 41 5.163884 GCTCACGTATATGATAGTGTCGCTA 60.164 44.000 0.00 0.00 36.16 4.26
41 42 4.378563 GCTCACGTATATGATAGTGTCGCT 60.379 45.833 0.00 0.00 36.16 4.93
42 43 3.846896 GCTCACGTATATGATAGTGTCGC 59.153 47.826 0.00 0.00 36.16 5.19
43 44 4.083484 TGGCTCACGTATATGATAGTGTCG 60.083 45.833 0.00 0.00 36.16 4.35
44 45 5.372547 TGGCTCACGTATATGATAGTGTC 57.627 43.478 0.00 0.00 36.16 3.67
45 46 5.784578 TTGGCTCACGTATATGATAGTGT 57.215 39.130 0.00 0.00 36.16 3.55
46 47 6.146184 CCTTTTGGCTCACGTATATGATAGTG 59.854 42.308 0.00 0.00 36.06 2.74
47 48 6.223852 CCTTTTGGCTCACGTATATGATAGT 58.776 40.000 0.00 0.00 0.00 2.12
48 49 6.712241 CCTTTTGGCTCACGTATATGATAG 57.288 41.667 0.00 0.00 0.00 2.08
64 65 1.660264 GACCGTTTGCGCCTTTTGG 60.660 57.895 4.18 2.72 44.18 3.28
65 66 1.660264 GGACCGTTTGCGCCTTTTG 60.660 57.895 4.18 0.00 36.67 2.44
66 67 2.725641 GGACCGTTTGCGCCTTTT 59.274 55.556 4.18 0.00 36.67 2.27
67 68 3.292159 GGGACCGTTTGCGCCTTT 61.292 61.111 4.18 0.00 36.67 3.11
74 75 2.907917 TTTGCCCGGGACCGTTTG 60.908 61.111 29.31 0.00 37.81 2.93
75 76 2.596338 CTTTGCCCGGGACCGTTT 60.596 61.111 29.31 0.00 37.81 3.60
76 77 4.653888 CCTTTGCCCGGGACCGTT 62.654 66.667 29.31 0.00 37.81 4.44
78 79 3.256824 TTACCTTTGCCCGGGACCG 62.257 63.158 29.31 8.74 39.44 4.79
79 80 1.378119 CTTACCTTTGCCCGGGACC 60.378 63.158 29.31 8.20 0.00 4.46
80 81 1.378119 CCTTACCTTTGCCCGGGAC 60.378 63.158 29.31 16.95 0.00 4.46
81 82 3.083386 CCTTACCTTTGCCCGGGA 58.917 61.111 29.31 6.60 0.00 5.14
82 83 2.754254 GCCTTACCTTTGCCCGGG 60.754 66.667 19.09 19.09 0.00 5.73
83 84 3.131478 CGCCTTACCTTTGCCCGG 61.131 66.667 0.00 0.00 0.00 5.73
84 85 2.046700 TCGCCTTACCTTTGCCCG 60.047 61.111 0.00 0.00 0.00 6.13
85 86 1.302993 TGTCGCCTTACCTTTGCCC 60.303 57.895 0.00 0.00 0.00 5.36
86 87 1.583495 GGTGTCGCCTTACCTTTGCC 61.583 60.000 0.00 0.00 34.11 4.52
87 88 1.583495 GGGTGTCGCCTTACCTTTGC 61.583 60.000 1.66 0.00 37.15 3.68
88 89 1.296056 CGGGTGTCGCCTTACCTTTG 61.296 60.000 1.66 0.00 37.15 2.77
89 90 1.004200 CGGGTGTCGCCTTACCTTT 60.004 57.895 1.66 0.00 37.15 3.11
90 91 2.212110 ACGGGTGTCGCCTTACCTT 61.212 57.895 1.66 0.00 43.89 3.50
91 92 2.602568 ACGGGTGTCGCCTTACCT 60.603 61.111 1.66 0.00 43.89 3.08
92 93 2.433664 CACGGGTGTCGCCTTACC 60.434 66.667 1.66 0.00 43.89 2.85
93 94 2.433664 CCACGGGTGTCGCCTTAC 60.434 66.667 1.66 0.00 43.89 2.34
94 95 3.697747 CCCACGGGTGTCGCCTTA 61.698 66.667 1.66 0.00 43.89 2.69
98 99 3.463585 TATCCCCACGGGTGTCGC 61.464 66.667 0.41 0.00 44.74 5.19
99 100 2.497770 GTATCCCCACGGGTGTCG 59.502 66.667 0.41 0.00 44.74 4.35
100 101 2.905681 GGTATCCCCACGGGTGTC 59.094 66.667 0.41 0.00 44.74 3.67
101 102 3.078836 CGGTATCCCCACGGGTGT 61.079 66.667 0.41 0.00 44.74 4.16
102 103 3.078836 ACGGTATCCCCACGGGTG 61.079 66.667 0.41 0.00 44.74 4.61
103 104 3.078836 CACGGTATCCCCACGGGT 61.079 66.667 0.41 0.00 44.74 5.28
104 105 4.540735 GCACGGTATCCCCACGGG 62.541 72.222 0.00 0.00 46.11 5.28
105 106 4.884257 CGCACGGTATCCCCACGG 62.884 72.222 0.00 0.00 0.00 4.94
106 107 4.137872 ACGCACGGTATCCCCACG 62.138 66.667 0.00 0.00 0.00 4.94
107 108 2.510691 CACGCACGGTATCCCCAC 60.511 66.667 0.00 0.00 0.00 4.61
108 109 2.680707 TCACGCACGGTATCCCCA 60.681 61.111 0.00 0.00 0.00 4.96
109 110 2.106332 CTCACGCACGGTATCCCC 59.894 66.667 0.00 0.00 0.00 4.81
110 111 2.106332 CCTCACGCACGGTATCCC 59.894 66.667 0.00 0.00 0.00 3.85
111 112 2.585247 GCCTCACGCACGGTATCC 60.585 66.667 0.00 0.00 37.47 2.59
112 113 2.585247 GGCCTCACGCACGGTATC 60.585 66.667 0.00 0.00 40.31 2.24
113 114 4.508128 CGGCCTCACGCACGGTAT 62.508 66.667 0.00 0.00 40.31 2.73
121 122 0.739462 TATCACTTTGCGGCCTCACG 60.739 55.000 0.00 0.00 0.00 4.35
122 123 1.331756 CATATCACTTTGCGGCCTCAC 59.668 52.381 0.00 0.00 0.00 3.51
123 124 1.209261 TCATATCACTTTGCGGCCTCA 59.791 47.619 0.00 0.00 0.00 3.86
124 125 1.869767 CTCATATCACTTTGCGGCCTC 59.130 52.381 0.00 0.00 0.00 4.70
125 126 1.475751 CCTCATATCACTTTGCGGCCT 60.476 52.381 0.00 0.00 0.00 5.19
126 127 0.947244 CCTCATATCACTTTGCGGCC 59.053 55.000 0.00 0.00 0.00 6.13
127 128 1.331756 CACCTCATATCACTTTGCGGC 59.668 52.381 0.00 0.00 0.00 6.53
128 129 2.632377 ACACCTCATATCACTTTGCGG 58.368 47.619 0.00 0.00 0.00 5.69
129 130 4.034048 GGTAACACCTCATATCACTTTGCG 59.966 45.833 0.00 0.00 34.73 4.85
130 131 4.034048 CGGTAACACCTCATATCACTTTGC 59.966 45.833 0.00 0.00 35.66 3.68
131 132 4.570772 CCGGTAACACCTCATATCACTTTG 59.429 45.833 0.00 0.00 35.66 2.77
132 133 4.766375 CCGGTAACACCTCATATCACTTT 58.234 43.478 0.00 0.00 35.66 2.66
133 134 3.431766 GCCGGTAACACCTCATATCACTT 60.432 47.826 1.90 0.00 35.66 3.16
134 135 2.102588 GCCGGTAACACCTCATATCACT 59.897 50.000 1.90 0.00 35.66 3.41
135 136 2.102588 AGCCGGTAACACCTCATATCAC 59.897 50.000 1.90 0.00 35.66 3.06
136 137 2.394632 AGCCGGTAACACCTCATATCA 58.605 47.619 1.90 0.00 35.66 2.15
137 138 3.825014 TCTAGCCGGTAACACCTCATATC 59.175 47.826 1.90 0.00 35.66 1.63
138 139 3.840991 TCTAGCCGGTAACACCTCATAT 58.159 45.455 1.90 0.00 35.66 1.78
139 140 3.301794 TCTAGCCGGTAACACCTCATA 57.698 47.619 1.90 0.00 35.66 2.15
140 141 2.154567 TCTAGCCGGTAACACCTCAT 57.845 50.000 1.90 0.00 35.66 2.90
141 142 2.029623 GATCTAGCCGGTAACACCTCA 58.970 52.381 1.90 0.00 35.66 3.86
142 143 1.001597 CGATCTAGCCGGTAACACCTC 60.002 57.143 1.90 0.00 35.66 3.85
143 144 1.030457 CGATCTAGCCGGTAACACCT 58.970 55.000 1.90 0.00 35.66 4.00
144 145 1.027357 TCGATCTAGCCGGTAACACC 58.973 55.000 1.90 0.00 34.05 4.16
145 146 2.034305 ACATCGATCTAGCCGGTAACAC 59.966 50.000 1.90 0.00 0.00 3.32
146 147 2.034179 CACATCGATCTAGCCGGTAACA 59.966 50.000 1.90 0.00 0.00 2.41
147 148 2.292569 TCACATCGATCTAGCCGGTAAC 59.707 50.000 1.90 0.00 0.00 2.50
148 149 2.292569 GTCACATCGATCTAGCCGGTAA 59.707 50.000 1.90 0.00 0.00 2.85
149 150 1.878088 GTCACATCGATCTAGCCGGTA 59.122 52.381 1.90 0.00 0.00 4.02
150 151 0.669077 GTCACATCGATCTAGCCGGT 59.331 55.000 1.90 0.00 0.00 5.28
151 152 0.668535 TGTCACATCGATCTAGCCGG 59.331 55.000 0.00 0.00 0.00 6.13
152 153 2.590073 GATGTCACATCGATCTAGCCG 58.410 52.381 0.93 0.00 0.00 5.52
153 154 2.226674 TCGATGTCACATCGATCTAGCC 59.773 50.000 33.92 0.00 44.42 3.93
154 155 3.544356 TCGATGTCACATCGATCTAGC 57.456 47.619 33.92 0.00 44.42 3.42
160 161 0.377203 CCGACTCGATGTCACATCGA 59.623 55.000 34.63 34.63 46.69 3.59
161 162 0.592500 CCCGACTCGATGTCACATCG 60.593 60.000 30.60 30.60 45.60 3.84
162 163 0.249073 CCCCGACTCGATGTCACATC 60.249 60.000 7.83 7.83 45.60 3.06
163 164 0.970937 ACCCCGACTCGATGTCACAT 60.971 55.000 13.14 0.00 45.60 3.21
164 165 1.592400 GACCCCGACTCGATGTCACA 61.592 60.000 13.14 0.00 45.60 3.58
165 166 1.139095 GACCCCGACTCGATGTCAC 59.861 63.158 13.14 0.00 45.60 3.67
166 167 2.050350 GGACCCCGACTCGATGTCA 61.050 63.158 16.91 0.00 45.60 3.58
167 168 1.753463 AGGACCCCGACTCGATGTC 60.753 63.158 0.00 5.96 42.06 3.06
168 169 2.052690 CAGGACCCCGACTCGATGT 61.053 63.158 0.00 0.00 0.00 3.06
169 170 1.753078 TCAGGACCCCGACTCGATG 60.753 63.158 0.00 0.00 0.00 3.84
170 171 1.753463 GTCAGGACCCCGACTCGAT 60.753 63.158 0.00 0.00 0.00 3.59
171 172 2.360852 GTCAGGACCCCGACTCGA 60.361 66.667 0.00 0.00 0.00 4.04
172 173 2.005960 GATGTCAGGACCCCGACTCG 62.006 65.000 11.80 0.00 31.80 4.18
173 174 0.684805 AGATGTCAGGACCCCGACTC 60.685 60.000 11.80 7.65 31.80 3.36
174 175 0.252284 AAGATGTCAGGACCCCGACT 60.252 55.000 11.80 0.06 31.80 4.18
175 176 0.175989 GAAGATGTCAGGACCCCGAC 59.824 60.000 4.95 4.95 0.00 4.79
176 177 0.252057 TGAAGATGTCAGGACCCCGA 60.252 55.000 0.00 0.00 0.00 5.14
177 178 2.286826 TGAAGATGTCAGGACCCCG 58.713 57.895 0.00 0.00 0.00 5.73
185 186 0.881796 ACGCTCGACTGAAGATGTCA 59.118 50.000 0.00 0.00 34.37 3.58
186 187 1.263776 CACGCTCGACTGAAGATGTC 58.736 55.000 0.00 0.00 0.00 3.06
187 188 0.734253 GCACGCTCGACTGAAGATGT 60.734 55.000 0.00 0.00 0.00 3.06
191 192 2.724708 GCTGCACGCTCGACTGAAG 61.725 63.158 0.00 0.00 35.14 3.02
237 238 4.219070 CCTCTCACTTCATTTGCCATTGAA 59.781 41.667 0.00 0.00 0.00 2.69
246 247 1.000955 ACGCGACCTCTCACTTCATTT 59.999 47.619 15.93 0.00 0.00 2.32
247 248 0.603569 ACGCGACCTCTCACTTCATT 59.396 50.000 15.93 0.00 0.00 2.57
249 250 1.579932 GACGCGACCTCTCACTTCA 59.420 57.895 15.93 0.00 0.00 3.02
251 252 2.963371 GGACGCGACCTCTCACTT 59.037 61.111 20.46 0.00 0.00 3.16
270 271 1.078214 CATTGAAGGCGGCTCAGGA 60.078 57.895 13.70 0.00 0.00 3.86
272 273 1.134699 TCTACATTGAAGGCGGCTCAG 60.135 52.381 13.70 3.17 0.00 3.35
306 307 0.833949 TACCCACATTCATGCCGCTA 59.166 50.000 0.00 0.00 0.00 4.26
308 309 2.024918 CTACCCACATTCATGCCGC 58.975 57.895 0.00 0.00 0.00 6.53
314 315 1.078497 CGCCAGCTACCCACATTCA 60.078 57.895 0.00 0.00 0.00 2.57
329 330 3.518068 CTTTTCCCATCCGGCGCC 61.518 66.667 19.07 19.07 0.00 6.53
335 336 3.401243 CTGCGCGCTTTTCCCATCC 62.401 63.158 33.29 0.00 0.00 3.51
338 339 2.593148 TTCTGCGCGCTTTTCCCA 60.593 55.556 33.29 8.98 0.00 4.37
344 345 3.240134 TTCCTCCTTCTGCGCGCTT 62.240 57.895 33.29 0.00 0.00 4.68
349 350 1.219393 GTCCCTTCCTCCTTCTGCG 59.781 63.158 0.00 0.00 0.00 5.18
352 353 2.376855 CCAAAAGTCCCTTCCTCCTTCT 59.623 50.000 0.00 0.00 0.00 2.85
358 359 0.482887 CCCACCAAAAGTCCCTTCCT 59.517 55.000 0.00 0.00 0.00 3.36
361 362 1.152333 GGCCCACCAAAAGTCCCTT 60.152 57.895 0.00 0.00 35.26 3.95
373 374 3.868200 CTTGACCACCCTGGCCCAC 62.868 68.421 0.00 0.00 42.67 4.61
381 382 2.203437 AAACCCGCTTGACCACCC 60.203 61.111 0.00 0.00 0.00 4.61
396 399 1.610554 GAGTCCGGACCGATCCCAAA 61.611 60.000 30.82 0.00 42.83 3.28
400 403 2.827642 ACGAGTCCGGACCGATCC 60.828 66.667 36.08 19.88 42.28 3.36
401 404 2.408022 CACGAGTCCGGACCGATC 59.592 66.667 36.08 25.40 40.78 3.69
402 405 3.823330 GCACGAGTCCGGACCGAT 61.823 66.667 36.08 23.58 40.78 4.18
416 419 1.021968 AACGTGGGAGAGTTTTGCAC 58.978 50.000 0.00 0.00 0.00 4.57
417 420 1.403679 CAAACGTGGGAGAGTTTTGCA 59.596 47.619 0.00 0.00 38.37 4.08
418 421 1.404035 ACAAACGTGGGAGAGTTTTGC 59.596 47.619 0.00 0.00 38.37 3.68
423 426 0.680061 GGAGACAAACGTGGGAGAGT 59.320 55.000 0.00 0.00 0.00 3.24
425 428 0.679505 CTGGAGACAAACGTGGGAGA 59.320 55.000 0.00 0.00 42.06 3.71
426 429 0.393077 ACTGGAGACAAACGTGGGAG 59.607 55.000 0.00 0.00 42.06 4.30
427 430 0.834612 AACTGGAGACAAACGTGGGA 59.165 50.000 0.00 0.00 42.06 4.37
432 435 1.796459 CCCGTAAACTGGAGACAAACG 59.204 52.381 0.00 0.00 42.06 3.60
443 446 1.142474 CGCGTTTTCTCCCGTAAACT 58.858 50.000 0.00 0.00 33.24 2.66
450 453 1.623973 CTTCGGACGCGTTTTCTCCC 61.624 60.000 15.53 7.92 0.00 4.30
466 469 1.153369 TATGGGTCTGCAGCGCTTC 60.153 57.895 7.50 2.39 0.00 3.86
469 472 1.305219 TTTGTATGGGTCTGCAGCGC 61.305 55.000 9.47 13.06 0.00 5.92
472 475 3.009723 ACGATTTTGTATGGGTCTGCAG 58.990 45.455 7.63 7.63 0.00 4.41
473 476 2.746904 CACGATTTTGTATGGGTCTGCA 59.253 45.455 0.00 0.00 0.00 4.41
474 477 2.747446 ACACGATTTTGTATGGGTCTGC 59.253 45.455 0.00 0.00 0.00 4.26
475 478 4.379394 CCAACACGATTTTGTATGGGTCTG 60.379 45.833 0.00 0.00 30.32 3.51
476 479 3.756434 CCAACACGATTTTGTATGGGTCT 59.244 43.478 0.00 0.00 30.32 3.85
477 480 3.754323 TCCAACACGATTTTGTATGGGTC 59.246 43.478 0.00 0.00 32.71 4.46
478 481 3.757270 TCCAACACGATTTTGTATGGGT 58.243 40.909 0.00 0.00 32.71 4.51
479 482 4.439974 CCATCCAACACGATTTTGTATGGG 60.440 45.833 10.17 0.00 32.65 4.00
480 483 4.671377 CCATCCAACACGATTTTGTATGG 58.329 43.478 0.00 0.00 30.43 2.74
481 484 4.104776 GCCATCCAACACGATTTTGTATG 58.895 43.478 0.00 0.00 0.00 2.39
482 485 4.016444 AGCCATCCAACACGATTTTGTAT 58.984 39.130 0.00 0.00 0.00 2.29
483 486 3.417101 AGCCATCCAACACGATTTTGTA 58.583 40.909 0.00 0.00 0.00 2.41
484 487 2.238521 AGCCATCCAACACGATTTTGT 58.761 42.857 0.00 0.00 0.00 2.83
485 488 3.302365 AAGCCATCCAACACGATTTTG 57.698 42.857 0.00 0.00 0.00 2.44
486 489 3.320541 TGAAAGCCATCCAACACGATTTT 59.679 39.130 0.00 0.00 0.00 1.82
487 490 2.890311 TGAAAGCCATCCAACACGATTT 59.110 40.909 0.00 0.00 0.00 2.17
488 491 2.513753 TGAAAGCCATCCAACACGATT 58.486 42.857 0.00 0.00 0.00 3.34
489 492 2.198827 TGAAAGCCATCCAACACGAT 57.801 45.000 0.00 0.00 0.00 3.73
491 494 1.135315 CCATGAAAGCCATCCAACACG 60.135 52.381 0.00 0.00 31.94 4.49
494 497 2.450476 AGACCATGAAAGCCATCCAAC 58.550 47.619 0.00 0.00 31.94 3.77
506 509 4.865925 CGAACCGTGTTATTTAGACCATGA 59.134 41.667 0.00 0.00 0.00 3.07
508 511 4.824289 ACGAACCGTGTTATTTAGACCAT 58.176 39.130 0.00 0.00 39.18 3.55
511 514 5.807011 ACCATACGAACCGTGTTATTTAGAC 59.193 40.000 1.93 0.00 41.39 2.59
513 516 6.471839 CAACCATACGAACCGTGTTATTTAG 58.528 40.000 1.93 0.00 41.39 1.85
514 517 5.163874 GCAACCATACGAACCGTGTTATTTA 60.164 40.000 1.93 0.00 41.39 1.40
515 518 4.378666 GCAACCATACGAACCGTGTTATTT 60.379 41.667 1.93 0.00 41.39 1.40
518 521 2.067766 GCAACCATACGAACCGTGTTA 58.932 47.619 1.93 0.00 41.39 2.41
520 523 0.249953 TGCAACCATACGAACCGTGT 60.250 50.000 1.93 0.00 41.39 4.49
525 528 1.338769 ACCTCCTGCAACCATACGAAC 60.339 52.381 0.00 0.00 0.00 3.95
527 530 0.981183 AACCTCCTGCAACCATACGA 59.019 50.000 0.00 0.00 0.00 3.43
529 532 2.749621 CTCAAACCTCCTGCAACCATAC 59.250 50.000 0.00 0.00 0.00 2.39
530 533 2.642311 TCTCAAACCTCCTGCAACCATA 59.358 45.455 0.00 0.00 0.00 2.74
532 535 0.843309 TCTCAAACCTCCTGCAACCA 59.157 50.000 0.00 0.00 0.00 3.67
534 537 2.262423 ACTCTCAAACCTCCTGCAAC 57.738 50.000 0.00 0.00 0.00 4.17
535 538 2.575532 CAACTCTCAAACCTCCTGCAA 58.424 47.619 0.00 0.00 0.00 4.08
538 541 1.528129 GCCAACTCTCAAACCTCCTG 58.472 55.000 0.00 0.00 0.00 3.86
550 553 1.066430 TGGTATCTCCAACGCCAACTC 60.066 52.381 0.00 0.00 44.12 3.01
551 554 0.981183 TGGTATCTCCAACGCCAACT 59.019 50.000 0.00 0.00 44.12 3.16
568 571 5.506686 GCTAGGGCTATTTCTTTTCTTGG 57.493 43.478 0.00 0.00 35.22 3.61
605 613 3.837213 AATAACATGCATATGCCGAGC 57.163 42.857 24.54 0.00 41.18 5.03
630 638 3.376234 ACGAATATGCATATGCCATGCTC 59.624 43.478 24.54 10.48 44.79 4.26
640 648 4.344359 TTGTGGCCTACGAATATGCATA 57.656 40.909 9.27 9.27 0.00 3.14
641 649 2.928801 TGTGGCCTACGAATATGCAT 57.071 45.000 3.32 3.79 0.00 3.96
651 659 4.752661 TTAACGTTTGATTGTGGCCTAC 57.247 40.909 5.91 0.69 0.00 3.18
652 660 5.708230 AGATTTAACGTTTGATTGTGGCCTA 59.292 36.000 5.91 0.00 0.00 3.93
653 661 4.522789 AGATTTAACGTTTGATTGTGGCCT 59.477 37.500 5.91 0.00 0.00 5.19
654 662 4.805219 AGATTTAACGTTTGATTGTGGCC 58.195 39.130 5.91 0.00 0.00 5.36
655 663 6.526674 CCTAAGATTTAACGTTTGATTGTGGC 59.473 38.462 5.91 0.00 0.00 5.01
656 664 7.590279 ACCTAAGATTTAACGTTTGATTGTGG 58.410 34.615 5.91 3.63 0.00 4.17
657 665 8.286800 TGACCTAAGATTTAACGTTTGATTGTG 58.713 33.333 5.91 0.00 0.00 3.33
658 666 8.287503 GTGACCTAAGATTTAACGTTTGATTGT 58.712 33.333 5.91 0.00 0.00 2.71
659 667 8.504005 AGTGACCTAAGATTTAACGTTTGATTG 58.496 33.333 5.91 0.00 0.00 2.67
660 668 8.617290 AGTGACCTAAGATTTAACGTTTGATT 57.383 30.769 5.91 0.00 0.00 2.57
661 669 9.148104 GTAGTGACCTAAGATTTAACGTTTGAT 57.852 33.333 5.91 0.28 0.00 2.57
662 670 8.362639 AGTAGTGACCTAAGATTTAACGTTTGA 58.637 33.333 5.91 0.00 0.00 2.69
663 671 8.530269 AGTAGTGACCTAAGATTTAACGTTTG 57.470 34.615 5.91 0.00 0.00 2.93
673 681 9.574516 AATGTTGAAAAAGTAGTGACCTAAGAT 57.425 29.630 0.00 0.00 0.00 2.40
675 683 9.450807 CAAATGTTGAAAAAGTAGTGACCTAAG 57.549 33.333 0.00 0.00 0.00 2.18
733 744 4.116961 CAACTTCCCGATTTCAGCGTATA 58.883 43.478 0.00 0.00 0.00 1.47
746 759 4.323477 TCCACCGCCAACTTCCCG 62.323 66.667 0.00 0.00 0.00 5.14
794 807 1.713078 ACAGCTCAAGGGAAGGGAAAT 59.287 47.619 0.00 0.00 0.00 2.17
885 899 0.666374 CCTTTTGGTGGTTCCGTGTC 59.334 55.000 0.00 0.00 39.52 3.67
933 947 1.609501 CGTCCTCTCTCCCACCCAA 60.610 63.158 0.00 0.00 0.00 4.12
1764 1786 4.473520 CAGTACTGCCCCGCCCAG 62.474 72.222 10.54 0.00 36.41 4.45
1785 1807 2.161855 TCATCAAGCTCAAAACGGCAT 58.838 42.857 0.00 0.00 0.00 4.40
1884 1906 0.627986 CCAATTCTTCCTCCAGGGCT 59.372 55.000 0.00 0.00 35.41 5.19
1909 1931 2.289257 TGCTGTCTCCATTGACACTCAG 60.289 50.000 0.00 0.00 41.43 3.35
1912 1934 1.696336 ACTGCTGTCTCCATTGACACT 59.304 47.619 0.00 0.00 41.43 3.55
1935 1957 2.236395 CTCCTCCTTACCACAATTCCGT 59.764 50.000 0.00 0.00 0.00 4.69
1983 2005 1.071471 CTGCAGAAACTCCCACGGT 59.929 57.895 8.42 0.00 0.00 4.83
1995 2017 1.600638 CCTCATCACTGGCTGCAGA 59.399 57.895 20.43 0.00 0.00 4.26
2202 2224 2.900546 AGAGGCTACCATTATTCCGGAG 59.099 50.000 3.34 0.00 0.00 4.63
2223 2245 2.595463 GTGCTTCCAGCTGTGCCA 60.595 61.111 13.81 1.19 42.97 4.92
2256 2278 1.480545 GTGTTTGGCTTGGAACTTGGT 59.519 47.619 0.00 0.00 0.00 3.67
2289 2311 1.951510 CAGCATGTCAGGTTTGCGT 59.048 52.632 0.00 0.00 41.22 5.24
2352 2374 3.536570 TGGTCGACATTTCAGTGACAAA 58.463 40.909 18.91 0.00 0.00 2.83
2418 2440 2.297033 ACATACCAAGCCAGCAGTTTTG 59.703 45.455 0.00 0.00 0.00 2.44
2421 2443 2.292828 AACATACCAAGCCAGCAGTT 57.707 45.000 0.00 0.00 0.00 3.16
2499 2521 8.245491 TGCAACGAGTAACATAACTACATAAGA 58.755 33.333 0.00 0.00 0.00 2.10
2593 2616 9.742144 ACAACAATAACCATTACCAACAGTATA 57.258 29.630 0.00 0.00 0.00 1.47
2710 2733 6.316390 ACAAAACTCTCCTACTGTTTCAGTTG 59.684 38.462 7.70 6.11 42.59 3.16
2714 2737 8.974060 AATTACAAAACTCTCCTACTGTTTCA 57.026 30.769 0.00 0.00 33.45 2.69
2769 2792 0.168128 GCCCTTGCATCGTTGTACAC 59.832 55.000 0.00 0.00 37.47 2.90
2812 2835 6.466885 AGTAGCTACGAATCAACCTGTAAT 57.533 37.500 17.99 0.00 0.00 1.89
2850 2873 5.409826 GCAAGTAGCAAACTCAACTGATACT 59.590 40.000 0.00 0.00 44.43 2.12
2851 2874 5.622378 GCAAGTAGCAAACTCAACTGATAC 58.378 41.667 0.00 0.00 44.79 2.24
2852 2875 5.862924 GCAAGTAGCAAACTCAACTGATA 57.137 39.130 0.00 0.00 44.79 2.15
2853 2876 4.756084 GCAAGTAGCAAACTCAACTGAT 57.244 40.909 0.00 0.00 44.79 2.90
2854 2877 8.001066 CTACTAGCAAGTAGCAAACTCAACTGA 61.001 40.741 0.00 0.00 46.53 3.41
2855 2878 6.090088 CTACTAGCAAGTAGCAAACTCAACTG 59.910 42.308 0.00 0.00 46.53 3.16
2856 2879 6.159988 CTACTAGCAAGTAGCAAACTCAACT 58.840 40.000 0.00 0.00 46.53 3.16
2857 2880 6.396459 CTACTAGCAAGTAGCAAACTCAAC 57.604 41.667 0.00 0.00 46.53 3.18
2895 2922 2.104967 ACATGTCCCTGGAATGCATTG 58.895 47.619 18.59 2.09 0.00 2.82
2924 2951 8.917088 AGAAAGAAGAATCAGAACCAATTTCAA 58.083 29.630 0.00 0.00 36.57 2.69
2971 2998 2.691526 GGCATCAATCCAAGAATGCTCA 59.308 45.455 6.19 0.00 35.57 4.26
3174 3201 5.273170 TGCTTCAAGTGAAAACAGAAATCG 58.727 37.500 0.00 0.00 33.07 3.34
3207 3234 4.223923 ACAAGTAATTCAGGACAGAGGGAG 59.776 45.833 0.00 0.00 0.00 4.30
3208 3235 4.168101 ACAAGTAATTCAGGACAGAGGGA 58.832 43.478 0.00 0.00 0.00 4.20
3209 3236 4.508662 GACAAGTAATTCAGGACAGAGGG 58.491 47.826 0.00 0.00 0.00 4.30
3210 3237 4.177026 CGACAAGTAATTCAGGACAGAGG 58.823 47.826 0.00 0.00 0.00 3.69
3211 3238 3.614616 GCGACAAGTAATTCAGGACAGAG 59.385 47.826 0.00 0.00 0.00 3.35
3212 3239 3.006430 TGCGACAAGTAATTCAGGACAGA 59.994 43.478 0.00 0.00 0.00 3.41
3213 3240 3.325870 TGCGACAAGTAATTCAGGACAG 58.674 45.455 0.00 0.00 0.00 3.51
3214 3241 3.006430 TCTGCGACAAGTAATTCAGGACA 59.994 43.478 0.00 0.00 0.00 4.02
3215 3242 3.585862 TCTGCGACAAGTAATTCAGGAC 58.414 45.455 0.00 0.00 0.00 3.85
3216 3243 3.509967 TCTCTGCGACAAGTAATTCAGGA 59.490 43.478 0.00 0.00 0.00 3.86
3217 3244 3.849911 TCTCTGCGACAAGTAATTCAGG 58.150 45.455 0.00 0.00 0.00 3.86
3218 3245 5.578336 TGAATCTCTGCGACAAGTAATTCAG 59.422 40.000 0.00 0.00 31.62 3.02
3219 3246 5.478407 TGAATCTCTGCGACAAGTAATTCA 58.522 37.500 0.00 0.00 32.20 2.57
3220 3247 6.595772 ATGAATCTCTGCGACAAGTAATTC 57.404 37.500 0.00 0.00 0.00 2.17
3221 3248 6.992063 AATGAATCTCTGCGACAAGTAATT 57.008 33.333 0.00 0.00 0.00 1.40
3222 3249 6.037610 GGAAATGAATCTCTGCGACAAGTAAT 59.962 38.462 0.00 0.00 0.00 1.89
3223 3250 5.351465 GGAAATGAATCTCTGCGACAAGTAA 59.649 40.000 0.00 0.00 0.00 2.24
3224 3251 4.870426 GGAAATGAATCTCTGCGACAAGTA 59.130 41.667 0.00 0.00 0.00 2.24
3225 3252 3.686726 GGAAATGAATCTCTGCGACAAGT 59.313 43.478 0.00 0.00 0.00 3.16
3226 3253 3.242220 CGGAAATGAATCTCTGCGACAAG 60.242 47.826 0.00 0.00 0.00 3.16
3227 3254 2.672874 CGGAAATGAATCTCTGCGACAA 59.327 45.455 0.00 0.00 0.00 3.18
3228 3255 2.270923 CGGAAATGAATCTCTGCGACA 58.729 47.619 0.00 0.00 0.00 4.35
3229 3256 1.004504 GCGGAAATGAATCTCTGCGAC 60.005 52.381 0.00 0.00 34.43 5.19
3230 3257 1.290203 GCGGAAATGAATCTCTGCGA 58.710 50.000 0.00 0.00 34.43 5.10
3231 3258 1.009078 TGCGGAAATGAATCTCTGCG 58.991 50.000 0.00 0.00 45.27 5.18
3232 3259 2.012673 AGTGCGGAAATGAATCTCTGC 58.987 47.619 0.00 0.00 43.09 4.26
3233 3260 4.437239 ACTAGTGCGGAAATGAATCTCTG 58.563 43.478 0.00 0.00 0.00 3.35
3234 3261 4.744795 ACTAGTGCGGAAATGAATCTCT 57.255 40.909 0.00 0.00 0.00 3.10
3235 3262 6.903883 TTAACTAGTGCGGAAATGAATCTC 57.096 37.500 0.00 0.00 0.00 2.75
3236 3263 7.254455 CGAATTAACTAGTGCGGAAATGAATCT 60.254 37.037 0.00 0.00 0.00 2.40
3237 3264 6.846283 CGAATTAACTAGTGCGGAAATGAATC 59.154 38.462 0.00 0.00 0.00 2.52
3238 3265 6.238374 CCGAATTAACTAGTGCGGAAATGAAT 60.238 38.462 13.01 0.00 41.11 2.57
3239 3266 5.064198 CCGAATTAACTAGTGCGGAAATGAA 59.936 40.000 13.01 0.00 41.11 2.57
3240 3267 4.569162 CCGAATTAACTAGTGCGGAAATGA 59.431 41.667 13.01 0.00 41.11 2.57
3241 3268 4.260620 CCCGAATTAACTAGTGCGGAAATG 60.261 45.833 17.50 3.47 41.11 2.32
3242 3269 3.875134 CCCGAATTAACTAGTGCGGAAAT 59.125 43.478 17.50 3.52 41.11 2.17
3243 3270 3.264104 CCCGAATTAACTAGTGCGGAAA 58.736 45.455 17.50 1.66 41.11 3.13
3244 3271 2.419021 CCCCGAATTAACTAGTGCGGAA 60.419 50.000 17.50 3.50 41.11 4.30
3245 3272 1.137479 CCCCGAATTAACTAGTGCGGA 59.863 52.381 17.50 0.00 41.11 5.54
3246 3273 1.578583 CCCCGAATTAACTAGTGCGG 58.421 55.000 0.00 5.35 38.54 5.69
3247 3274 0.935196 GCCCCGAATTAACTAGTGCG 59.065 55.000 0.00 0.00 0.00 5.34
3248 3275 0.935196 CGCCCCGAATTAACTAGTGC 59.065 55.000 0.00 0.00 0.00 4.40
3249 3276 1.137479 TCCGCCCCGAATTAACTAGTG 59.863 52.381 0.00 0.00 0.00 2.74
3250 3277 1.411612 CTCCGCCCCGAATTAACTAGT 59.588 52.381 0.00 0.00 0.00 2.57
3251 3278 1.270147 CCTCCGCCCCGAATTAACTAG 60.270 57.143 0.00 0.00 0.00 2.57
3252 3279 0.754472 CCTCCGCCCCGAATTAACTA 59.246 55.000 0.00 0.00 0.00 2.24
3253 3280 1.525442 CCTCCGCCCCGAATTAACT 59.475 57.895 0.00 0.00 0.00 2.24
3254 3281 1.525306 CCCTCCGCCCCGAATTAAC 60.525 63.158 0.00 0.00 0.00 2.01
3255 3282 1.689932 TCCCTCCGCCCCGAATTAA 60.690 57.895 0.00 0.00 0.00 1.40
3256 3283 2.041715 TCCCTCCGCCCCGAATTA 60.042 61.111 0.00 0.00 0.00 1.40
3257 3284 2.884179 TACTCCCTCCGCCCCGAATT 62.884 60.000 0.00 0.00 0.00 2.17
3258 3285 3.384555 TACTCCCTCCGCCCCGAAT 62.385 63.158 0.00 0.00 0.00 3.34
3259 3286 4.064768 TACTCCCTCCGCCCCGAA 62.065 66.667 0.00 0.00 0.00 4.30
3260 3287 4.517934 CTACTCCCTCCGCCCCGA 62.518 72.222 0.00 0.00 0.00 5.14
3261 3288 3.426309 TACTACTCCCTCCGCCCCG 62.426 68.421 0.00 0.00 0.00 5.73
3262 3289 1.531128 CTACTACTCCCTCCGCCCC 60.531 68.421 0.00 0.00 0.00 5.80
3263 3290 0.396835 AACTACTACTCCCTCCGCCC 60.397 60.000 0.00 0.00 0.00 6.13
3264 3291 2.355010 TAACTACTACTCCCTCCGCC 57.645 55.000 0.00 0.00 0.00 6.13
3265 3292 4.725790 TTTTAACTACTACTCCCTCCGC 57.274 45.455 0.00 0.00 0.00 5.54
3266 3293 6.098017 CACTTTTTAACTACTACTCCCTCCG 58.902 44.000 0.00 0.00 0.00 4.63
3267 3294 7.002250 ACACTTTTTAACTACTACTCCCTCC 57.998 40.000 0.00 0.00 0.00 4.30
3268 3295 9.636879 CTAACACTTTTTAACTACTACTCCCTC 57.363 37.037 0.00 0.00 0.00 4.30
3269 3296 9.372189 TCTAACACTTTTTAACTACTACTCCCT 57.628 33.333 0.00 0.00 0.00 4.20
3270 3297 9.987272 TTCTAACACTTTTTAACTACTACTCCC 57.013 33.333 0.00 0.00 0.00 4.30
3276 3303 9.338622 AGTGCATTCTAACACTTTTTAACTACT 57.661 29.630 0.00 0.00 44.59 2.57
3283 3310 9.626045 GCTAATTAGTGCATTCTAACACTTTTT 57.374 29.630 13.91 0.00 44.59 1.94
3284 3311 9.014297 AGCTAATTAGTGCATTCTAACACTTTT 57.986 29.630 13.91 0.00 44.59 2.27
3285 3312 8.454106 CAGCTAATTAGTGCATTCTAACACTTT 58.546 33.333 13.91 0.00 44.59 2.66
3286 3313 7.414540 GCAGCTAATTAGTGCATTCTAACACTT 60.415 37.037 23.56 0.00 44.59 3.16
3288 3315 6.037610 AGCAGCTAATTAGTGCATTCTAACAC 59.962 38.462 27.07 6.39 39.80 3.32
3289 3316 6.037500 CAGCAGCTAATTAGTGCATTCTAACA 59.962 38.462 27.07 0.00 39.80 2.41
3290 3317 6.425504 CAGCAGCTAATTAGTGCATTCTAAC 58.574 40.000 27.07 9.51 39.80 2.34
3291 3318 5.008019 GCAGCAGCTAATTAGTGCATTCTAA 59.992 40.000 27.07 0.00 39.80 2.10
3292 3319 4.512944 GCAGCAGCTAATTAGTGCATTCTA 59.487 41.667 27.07 0.00 39.80 2.10
3293 3320 3.314635 GCAGCAGCTAATTAGTGCATTCT 59.685 43.478 27.07 13.69 39.80 2.40
3294 3321 3.065786 TGCAGCAGCTAATTAGTGCATTC 59.934 43.478 27.07 19.60 42.74 2.67
3295 3322 3.018856 TGCAGCAGCTAATTAGTGCATT 58.981 40.909 27.07 14.40 42.74 3.56
3296 3323 2.646930 TGCAGCAGCTAATTAGTGCAT 58.353 42.857 27.07 16.69 42.74 3.96
3297 3324 2.112380 TGCAGCAGCTAATTAGTGCA 57.888 45.000 27.07 23.57 42.74 4.57
3298 3325 2.615447 TCATGCAGCAGCTAATTAGTGC 59.385 45.455 22.15 22.15 42.74 4.40
3299 3326 3.250280 CCTCATGCAGCAGCTAATTAGTG 59.750 47.826 13.91 11.32 42.74 2.74
3300 3327 3.474600 CCTCATGCAGCAGCTAATTAGT 58.525 45.455 13.91 0.00 42.74 2.24
3301 3328 2.225963 GCCTCATGCAGCAGCTAATTAG 59.774 50.000 8.20 8.20 42.74 1.73
3302 3329 2.224606 GCCTCATGCAGCAGCTAATTA 58.775 47.619 0.00 0.00 42.74 1.40
3303 3330 1.030457 GCCTCATGCAGCAGCTAATT 58.970 50.000 0.00 0.00 42.74 1.40
3304 3331 2.716814 GCCTCATGCAGCAGCTAAT 58.283 52.632 0.00 0.00 42.74 1.73
3305 3332 4.230603 GCCTCATGCAGCAGCTAA 57.769 55.556 0.00 0.00 42.74 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.