Multiple sequence alignment - TraesCS4A01G207200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G207200 chr4A 100.000 3731 0 0 1 3731 500430374 500434104 0.000000e+00 6890.0
1 TraesCS4A01G207200 chr4A 75.789 190 38 7 1013 1200 190596815 190596998 5.130000e-14 89.8
2 TraesCS4A01G207200 chr4B 96.443 2165 65 6 731 2893 124045765 124047919 0.000000e+00 3561.0
3 TraesCS4A01G207200 chr4B 84.706 85 5 3 3047 3131 40478995 40478919 1.110000e-10 78.7
4 TraesCS4A01G207200 chr4B 83.529 85 6 3 3047 3131 40479139 40479063 5.170000e-09 73.1
5 TraesCS4A01G207200 chr4D 95.987 2168 62 10 731 2893 87727350 87729497 0.000000e+00 3498.0
6 TraesCS4A01G207200 chr4D 96.463 735 24 2 1 734 173603970 173604703 0.000000e+00 1212.0
7 TraesCS4A01G207200 chr4D 96.443 731 24 2 1 730 64211823 64211094 0.000000e+00 1205.0
8 TraesCS4A01G207200 chr4D 95.068 730 34 2 3 730 444111315 444112044 0.000000e+00 1147.0
9 TraesCS4A01G207200 chr4D 86.177 463 55 3 1001 1455 488254675 488254214 3.350000e-135 492.0
10 TraesCS4A01G207200 chr5D 96.626 741 22 3 1 738 380011611 380012351 0.000000e+00 1227.0
11 TraesCS4A01G207200 chr5D 81.592 201 20 8 1926 2110 22408783 22408584 2.320000e-32 150.0
12 TraesCS4A01G207200 chr3D 96.317 733 25 2 1 731 131595278 131596010 0.000000e+00 1203.0
13 TraesCS4A01G207200 chr3D 95.687 742 26 2 1 736 154455094 154455835 0.000000e+00 1188.0
14 TraesCS4A01G207200 chr3D 90.278 72 7 0 1130 1201 2408592 2408663 1.100000e-15 95.3
15 TraesCS4A01G207200 chr6D 95.902 732 29 1 1 731 53656494 53657225 0.000000e+00 1184.0
16 TraesCS4A01G207200 chr6D 95.570 745 22 5 1 739 296394174 296394913 0.000000e+00 1182.0
17 TraesCS4A01G207200 chr7D 95.753 730 28 2 7 735 535911108 535910381 0.000000e+00 1173.0
18 TraesCS4A01G207200 chrUn 85.664 858 63 23 2896 3731 322542602 322541783 0.000000e+00 848.0
19 TraesCS4A01G207200 chr2D 85.291 877 60 23 2882 3730 73317909 73318744 0.000000e+00 841.0
20 TraesCS4A01G207200 chr2D 78.704 216 38 7 1016 1229 373135527 373135318 1.810000e-28 137.0
21 TraesCS4A01G207200 chr2D 93.220 59 4 0 1136 1194 382670377 382670319 1.850000e-13 87.9
22 TraesCS4A01G207200 chr7A 86.920 711 51 15 3040 3730 195099111 195098423 0.000000e+00 760.0
23 TraesCS4A01G207200 chr7A 86.738 558 45 14 3195 3731 250614696 250614147 8.920000e-166 593.0
24 TraesCS4A01G207200 chr7A 79.581 382 43 16 3080 3437 694497252 694496882 1.340000e-59 241.0
25 TraesCS4A01G207200 chr2B 88.624 545 35 7 3207 3731 789691625 789691088 4.060000e-179 638.0
26 TraesCS4A01G207200 chr6A 89.730 370 38 0 1313 1682 10955144 10954775 1.210000e-129 473.0
27 TraesCS4A01G207200 chr6A 84.557 395 45 6 889 1269 10981933 10981541 9.780000e-101 377.0
28 TraesCS4A01G207200 chr1B 84.861 469 49 6 1001 1461 348321985 348321531 1.580000e-123 453.0
29 TraesCS4A01G207200 chr3A 90.909 55 5 0 1130 1184 1704332 1704278 1.440000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G207200 chr4A 500430374 500434104 3730 False 6890 6890 100.000 1 3731 1 chr4A.!!$F2 3730
1 TraesCS4A01G207200 chr4B 124045765 124047919 2154 False 3561 3561 96.443 731 2893 1 chr4B.!!$F1 2162
2 TraesCS4A01G207200 chr4D 87727350 87729497 2147 False 3498 3498 95.987 731 2893 1 chr4D.!!$F1 2162
3 TraesCS4A01G207200 chr4D 173603970 173604703 733 False 1212 1212 96.463 1 734 1 chr4D.!!$F2 733
4 TraesCS4A01G207200 chr4D 64211094 64211823 729 True 1205 1205 96.443 1 730 1 chr4D.!!$R1 729
5 TraesCS4A01G207200 chr4D 444111315 444112044 729 False 1147 1147 95.068 3 730 1 chr4D.!!$F3 727
6 TraesCS4A01G207200 chr5D 380011611 380012351 740 False 1227 1227 96.626 1 738 1 chr5D.!!$F1 737
7 TraesCS4A01G207200 chr3D 131595278 131596010 732 False 1203 1203 96.317 1 731 1 chr3D.!!$F2 730
8 TraesCS4A01G207200 chr3D 154455094 154455835 741 False 1188 1188 95.687 1 736 1 chr3D.!!$F3 735
9 TraesCS4A01G207200 chr6D 53656494 53657225 731 False 1184 1184 95.902 1 731 1 chr6D.!!$F1 730
10 TraesCS4A01G207200 chr6D 296394174 296394913 739 False 1182 1182 95.570 1 739 1 chr6D.!!$F2 738
11 TraesCS4A01G207200 chr7D 535910381 535911108 727 True 1173 1173 95.753 7 735 1 chr7D.!!$R1 728
12 TraesCS4A01G207200 chrUn 322541783 322542602 819 True 848 848 85.664 2896 3731 1 chrUn.!!$R1 835
13 TraesCS4A01G207200 chr2D 73317909 73318744 835 False 841 841 85.291 2882 3730 1 chr2D.!!$F1 848
14 TraesCS4A01G207200 chr7A 195098423 195099111 688 True 760 760 86.920 3040 3730 1 chr7A.!!$R1 690
15 TraesCS4A01G207200 chr7A 250614147 250614696 549 True 593 593 86.738 3195 3731 1 chr7A.!!$R2 536
16 TraesCS4A01G207200 chr2B 789691088 789691625 537 True 638 638 88.624 3207 3731 1 chr2B.!!$R1 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
601 613 0.178068 ACTCTCACACACCACACACC 59.822 55.000 0.00 0.00 0.00 4.16 F
654 666 0.591170 AAACGTGCCAAGATTCGTGG 59.409 50.000 13.61 13.61 39.33 4.94 F
988 1005 1.201672 CGACTTAAAGAAGACACGCGC 60.202 52.381 5.73 0.00 36.45 6.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2073 2096 1.001745 CGTTCACGATGAGCACGTCA 61.002 55.0 4.21 0.0 42.07 4.35 R
2127 2150 1.745320 GATACATCACCGGCTCCCGT 61.745 60.0 0.00 0.0 46.80 5.28 R
2904 2929 0.958091 TTGGTTTTCATCCGGCTGTG 59.042 50.0 5.00 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
216 217 1.608025 GCGGAACATTGACCACAGAGA 60.608 52.381 0.00 0.00 0.00 3.10
233 234 2.504996 AGAGAAGAGGGGAGAAATGCAG 59.495 50.000 0.00 0.00 0.00 4.41
348 349 2.357034 GCCGTTGACTCTTCCGCA 60.357 61.111 0.00 0.00 0.00 5.69
601 613 0.178068 ACTCTCACACACCACACACC 59.822 55.000 0.00 0.00 0.00 4.16
603 615 1.223211 CTCACACACCACACACCCA 59.777 57.895 0.00 0.00 0.00 4.51
654 666 0.591170 AAACGTGCCAAGATTCGTGG 59.409 50.000 13.61 13.61 39.33 4.94
934 951 3.788227 AACCCACATCACACTGTACAT 57.212 42.857 0.00 0.00 0.00 2.29
957 974 2.677836 CCATCCTAACACATCACAACGG 59.322 50.000 0.00 0.00 0.00 4.44
988 1005 1.201672 CGACTTAAAGAAGACACGCGC 60.202 52.381 5.73 0.00 36.45 6.86
1489 1512 3.379445 GCCTGTTCTCCCCGACGA 61.379 66.667 0.00 0.00 0.00 4.20
1821 1844 2.683933 ACGATCCCTGGCGGAGTT 60.684 61.111 0.00 0.00 46.60 3.01
1851 1874 4.180946 CCGTCCTCTGGCTCGTCG 62.181 72.222 0.00 0.00 0.00 5.12
2196 2219 2.737376 GCGCGGTTCGAGGTTCTT 60.737 61.111 8.83 0.00 41.67 2.52
2737 2760 2.831366 GCAGCGCCATGATCACTGG 61.831 63.158 2.29 15.80 36.81 4.00
2848 2873 5.717078 TGTTAACGTAGGTCAGAAGATGT 57.283 39.130 0.26 0.00 0.00 3.06
2849 2874 5.706916 TGTTAACGTAGGTCAGAAGATGTC 58.293 41.667 0.26 0.00 0.00 3.06
2853 2878 6.777213 AACGTAGGTCAGAAGATGTCTTAT 57.223 37.500 0.00 0.00 36.11 1.73
2863 2888 9.436957 GTCAGAAGATGTCTTATTTAGTTTGGA 57.563 33.333 0.00 0.00 36.11 3.53
2886 2911 8.869109 TGGAAAAAGTGACCAGAATTTATCAAT 58.131 29.630 0.00 0.00 0.00 2.57
2943 2968 4.506288 CCAATTGGGTTTCAGTCGTTTTTC 59.494 41.667 17.36 0.00 0.00 2.29
2944 2969 4.993029 ATTGGGTTTCAGTCGTTTTTCA 57.007 36.364 0.00 0.00 0.00 2.69
2945 2970 4.364415 TTGGGTTTCAGTCGTTTTTCAG 57.636 40.909 0.00 0.00 0.00 3.02
2946 2971 3.349022 TGGGTTTCAGTCGTTTTTCAGT 58.651 40.909 0.00 0.00 0.00 3.41
2960 2987 6.470877 TCGTTTTTCAGTCAATTACAACTTGC 59.529 34.615 0.00 0.00 0.00 4.01
2979 3006 1.623811 GCCAAGAGTTCCTGTCCACTA 59.376 52.381 0.00 0.00 0.00 2.74
3004 3031 3.243569 CGTCCCTCTCCTGAATGTATGTC 60.244 52.174 0.00 0.00 0.00 3.06
3005 3032 3.070302 GTCCCTCTCCTGAATGTATGTCC 59.930 52.174 0.00 0.00 0.00 4.02
3029 3056 5.321516 GTTTCCTGAATGTATGTACGTTGC 58.678 41.667 0.00 0.00 35.69 4.17
3077 3104 7.439655 GTCTCTCCCTTATAACAACATCATGAC 59.560 40.741 0.00 0.00 0.00 3.06
3078 3105 7.345653 TCTCTCCCTTATAACAACATCATGACT 59.654 37.037 0.00 0.00 0.00 3.41
3079 3106 7.861629 TCTCCCTTATAACAACATCATGACTT 58.138 34.615 0.00 0.00 0.00 3.01
3080 3107 7.987458 TCTCCCTTATAACAACATCATGACTTC 59.013 37.037 0.00 0.00 0.00 3.01
3081 3108 7.629157 TCCCTTATAACAACATCATGACTTCA 58.371 34.615 0.00 0.00 0.00 3.02
3082 3109 8.274322 TCCCTTATAACAACATCATGACTTCAT 58.726 33.333 0.00 0.00 36.96 2.57
3110 3137 4.684242 CCCAAATACAAAAGCGAAAGGAAC 59.316 41.667 0.00 0.00 0.00 3.62
3125 3152 5.235616 CGAAAGGAACACTACAGTAAAAGCA 59.764 40.000 0.00 0.00 0.00 3.91
3170 3197 1.162698 CAGCCACTGACACCATTCTG 58.837 55.000 0.00 0.00 32.44 3.02
3172 3199 1.421268 AGCCACTGACACCATTCTGAA 59.579 47.619 0.00 0.00 0.00 3.02
3181 3208 7.592533 CACTGACACCATTCTGAAATGTAAAAG 59.407 37.037 0.00 2.35 40.63 2.27
3188 3215 9.520515 ACCATTCTGAAATGTAAAAGATACAGT 57.479 29.630 0.00 0.00 40.63 3.55
3219 3246 7.063074 ACTGAAACGATCGGTCTAATTAGTTTG 59.937 37.037 20.98 3.79 44.63 2.93
3247 3274 8.494433 ACTATGGAATAATTACATGTCAGGTGT 58.506 33.333 0.00 0.00 0.00 4.16
3311 3338 1.202794 TCAGTCCAACTGCAGCATTCA 60.203 47.619 15.27 0.00 45.54 2.57
3314 3341 1.610522 GTCCAACTGCAGCATTCACTT 59.389 47.619 15.27 0.00 0.00 3.16
3322 3349 7.423199 CAACTGCAGCATTCACTTATATCAAT 58.577 34.615 15.27 0.00 0.00 2.57
3431 3461 2.772287 GAAGCACTTCTAACAGCCAGT 58.228 47.619 3.10 0.00 36.69 4.00
3432 3462 3.926616 GAAGCACTTCTAACAGCCAGTA 58.073 45.455 3.10 0.00 36.69 2.74
3433 3463 3.601443 AGCACTTCTAACAGCCAGTAG 57.399 47.619 0.00 0.00 0.00 2.57
3434 3464 3.165875 AGCACTTCTAACAGCCAGTAGA 58.834 45.455 0.00 0.00 0.00 2.59
3455 3485 6.687081 AGATAGTAGACACTAGAAGCACAC 57.313 41.667 0.00 0.00 40.57 3.82
3474 3504 5.471116 GCACACCTAGATCATAATTGCATCA 59.529 40.000 0.00 0.00 0.00 3.07
3520 3568 5.366768 ACTGTGTACAATATCTGGCCATAGT 59.633 40.000 5.51 1.30 31.11 2.12
3622 3673 7.042797 TCTCCAAATTGAAAGAAAGGAACAG 57.957 36.000 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.153353 TTGAGCCGGCGTTTTTCTAG 58.847 50.000 23.20 0.00 0.00 2.43
216 217 0.627986 CCCTGCATTTCTCCCCTCTT 59.372 55.000 0.00 0.00 0.00 2.85
336 337 2.184322 GCGGATGCGGAAGAGTCA 59.816 61.111 9.20 0.00 0.00 3.41
348 349 4.208686 GAGAAGGCGACGGCGGAT 62.209 66.667 15.06 6.44 41.24 4.18
601 613 0.250124 TGCCACGTAGGACAAGTTGG 60.250 55.000 7.96 0.00 41.22 3.77
603 615 0.466543 TGTGCCACGTAGGACAAGTT 59.533 50.000 5.76 0.00 41.22 2.66
633 645 2.542824 CCACGAATCTTGGCACGTTTTT 60.543 45.455 0.00 0.00 36.86 1.94
654 666 1.214367 TCGCCGTTCAACAGTTTCTC 58.786 50.000 0.00 0.00 0.00 2.87
711 728 5.379732 TTTTCGAAAAAGATAACGCCCAT 57.620 34.783 20.56 0.00 0.00 4.00
742 759 6.523201 CGTAAGTACCTTGAAACAAATGATGC 59.477 38.462 0.00 0.00 0.00 3.91
785 802 2.168728 ACCTAAGGTCCTTTCTCGCATC 59.831 50.000 10.04 0.00 0.00 3.91
787 804 1.275291 CACCTAAGGTCCTTTCTCGCA 59.725 52.381 10.04 0.00 31.02 5.10
793 810 5.600669 AAGAATTCCACCTAAGGTCCTTT 57.399 39.130 10.04 0.00 31.02 3.11
934 951 4.500127 CGTTGTGATGTGTTAGGATGGTA 58.500 43.478 0.00 0.00 0.00 3.25
957 974 2.156891 TCTTTAAGTCGTTGCATCGCAC 59.843 45.455 12.30 10.95 38.71 5.34
1590 1613 4.501058 GGGAAGAACTCGAAGTTGTACTGT 60.501 45.833 5.20 0.00 38.80 3.55
2073 2096 1.001745 CGTTCACGATGAGCACGTCA 61.002 55.000 4.21 0.00 42.07 4.35
2127 2150 1.745320 GATACATCACCGGCTCCCGT 61.745 60.000 0.00 0.00 46.80 5.28
2523 2546 2.079049 GTTCATCCCGAACGAGTGC 58.921 57.895 0.00 0.00 44.41 4.40
2737 2760 8.867112 ATCTTTCACATTGATATCATTTGTGC 57.133 30.769 28.13 0.00 38.83 4.57
2848 2873 9.191479 TGGTCACTTTTTCCAAACTAAATAAGA 57.809 29.630 0.00 0.00 0.00 2.10
2849 2874 9.463443 CTGGTCACTTTTTCCAAACTAAATAAG 57.537 33.333 0.00 0.00 0.00 1.73
2853 2878 7.469537 TTCTGGTCACTTTTTCCAAACTAAA 57.530 32.000 0.00 0.00 0.00 1.85
2894 2919 2.672961 TCCGGCTGTGAAATAGACAG 57.327 50.000 0.00 0.00 43.22 3.51
2904 2929 0.958091 TTGGTTTTCATCCGGCTGTG 59.042 50.000 5.00 0.00 0.00 3.66
2943 2968 5.009010 ACTCTTGGCAAGTTGTAATTGACTG 59.991 40.000 25.39 0.00 36.59 3.51
2944 2969 5.133221 ACTCTTGGCAAGTTGTAATTGACT 58.867 37.500 25.39 1.02 36.59 3.41
2945 2970 5.438761 ACTCTTGGCAAGTTGTAATTGAC 57.561 39.130 25.39 0.00 36.15 3.18
2946 2971 5.009610 GGAACTCTTGGCAAGTTGTAATTGA 59.990 40.000 25.39 3.65 37.10 2.57
2960 2987 4.440250 CGTATAGTGGACAGGAACTCTTGG 60.440 50.000 0.00 0.00 34.60 3.61
2979 3006 3.033659 ACATTCAGGAGAGGGACGTAT 57.966 47.619 0.00 0.00 0.00 3.06
3004 3031 4.178540 ACGTACATACATTCAGGAAACGG 58.821 43.478 0.00 0.00 32.47 4.44
3005 3032 5.547341 CAACGTACATACATTCAGGAAACG 58.453 41.667 0.00 0.00 0.00 3.60
3029 3056 5.661458 ACTTGATATTGTTACTGACGGAGG 58.339 41.667 0.00 0.00 0.00 4.30
3077 3104 6.095377 GCTTTTGTATTTGGGTCTCATGAAG 58.905 40.000 0.00 0.00 0.00 3.02
3078 3105 5.335583 CGCTTTTGTATTTGGGTCTCATGAA 60.336 40.000 0.00 0.00 0.00 2.57
3079 3106 4.155826 CGCTTTTGTATTTGGGTCTCATGA 59.844 41.667 0.00 0.00 0.00 3.07
3080 3107 4.155826 TCGCTTTTGTATTTGGGTCTCATG 59.844 41.667 0.00 0.00 0.00 3.07
3081 3108 4.331968 TCGCTTTTGTATTTGGGTCTCAT 58.668 39.130 0.00 0.00 0.00 2.90
3082 3109 3.745799 TCGCTTTTGTATTTGGGTCTCA 58.254 40.909 0.00 0.00 0.00 3.27
3083 3110 4.759516 TTCGCTTTTGTATTTGGGTCTC 57.240 40.909 0.00 0.00 0.00 3.36
3084 3111 4.022329 CCTTTCGCTTTTGTATTTGGGTCT 60.022 41.667 0.00 0.00 0.00 3.85
3085 3112 4.022676 TCCTTTCGCTTTTGTATTTGGGTC 60.023 41.667 0.00 0.00 0.00 4.46
3086 3113 3.892588 TCCTTTCGCTTTTGTATTTGGGT 59.107 39.130 0.00 0.00 0.00 4.51
3110 3137 5.295787 TCAGGTGTTTGCTTTTACTGTAGTG 59.704 40.000 0.00 0.00 0.00 2.74
3125 3152 6.766467 CACTTCCTAGTTTAGTTCAGGTGTTT 59.234 38.462 0.00 0.00 30.26 2.83
3189 3216 9.245962 CTAATTAGACCGATCGTTTCAGTTATT 57.754 33.333 15.09 9.94 0.00 1.40
3190 3217 8.411683 ACTAATTAGACCGATCGTTTCAGTTAT 58.588 33.333 19.38 0.60 0.00 1.89
3191 3218 7.765307 ACTAATTAGACCGATCGTTTCAGTTA 58.235 34.615 19.38 9.08 0.00 2.24
3192 3219 6.628185 ACTAATTAGACCGATCGTTTCAGTT 58.372 36.000 19.38 8.50 0.00 3.16
3203 3230 6.046593 CCATAGTGCAAACTAATTAGACCGA 58.953 40.000 19.38 0.00 0.00 4.69
3205 3232 7.859325 TTCCATAGTGCAAACTAATTAGACC 57.141 36.000 19.38 4.82 0.00 3.85
3219 3246 7.445402 ACCTGACATGTAATTATTCCATAGTGC 59.555 37.037 0.00 0.00 0.00 4.40
3234 3261 1.078823 AGGGAGGACACCTGACATGTA 59.921 52.381 0.00 0.00 36.85 2.29
3247 3274 3.374318 GGAGAGAGGTGATTTAGGGAGGA 60.374 52.174 0.00 0.00 0.00 3.71
3428 3458 7.496263 TGTGCTTCTAGTGTCTACTATCTACTG 59.504 40.741 0.00 0.00 38.65 2.74
3429 3459 7.496591 GTGTGCTTCTAGTGTCTACTATCTACT 59.503 40.741 0.00 0.00 38.65 2.57
3430 3460 7.254863 GGTGTGCTTCTAGTGTCTACTATCTAC 60.255 44.444 0.00 0.00 38.65 2.59
3431 3461 6.766944 GGTGTGCTTCTAGTGTCTACTATCTA 59.233 42.308 0.00 0.00 38.65 1.98
3432 3462 5.591067 GGTGTGCTTCTAGTGTCTACTATCT 59.409 44.000 0.00 0.00 38.65 1.98
3433 3463 5.591067 AGGTGTGCTTCTAGTGTCTACTATC 59.409 44.000 0.00 0.00 38.65 2.08
3434 3464 5.511363 AGGTGTGCTTCTAGTGTCTACTAT 58.489 41.667 0.00 0.00 38.65 2.12
3501 3534 6.992715 ACAAGAACTATGGCCAGATATTGTAC 59.007 38.462 13.05 0.00 0.00 2.90
3505 3538 7.806180 AGTTACAAGAACTATGGCCAGATATT 58.194 34.615 13.05 3.86 0.00 1.28
3547 3595 8.834465 CCTTCATAAATCAGGATAGTTTGTCAG 58.166 37.037 0.00 0.00 0.00 3.51
3558 3609 8.609617 TCTCTTTCTACCTTCATAAATCAGGA 57.390 34.615 0.00 0.00 0.00 3.86
3622 3673 5.297547 TGTTTCCTGATGTACACTTGTCTC 58.702 41.667 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.