Multiple sequence alignment - TraesCS4A01G207000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4A01G207000 | chr4A | 100.000 | 6582 | 0 | 0 | 1 | 6582 | 500358005 | 500351424 | 0.000000e+00 | 12155.0 |
1 | TraesCS4A01G207000 | chr4A | 93.249 | 237 | 16 | 0 | 1 | 237 | 702332378 | 702332142 | 3.780000e-92 | 350.0 |
2 | TraesCS4A01G207000 | chr4A | 94.872 | 39 | 1 | 1 | 6051 | 6089 | 494006896 | 494006933 | 7.130000e-05 | 60.2 |
3 | TraesCS4A01G207000 | chr4D | 94.650 | 5140 | 205 | 27 | 871 | 5972 | 87721726 | 87716619 | 0.000000e+00 | 7904.0 |
4 | TraesCS4A01G207000 | chr4D | 88.993 | 536 | 26 | 15 | 6061 | 6582 | 87716455 | 87715939 | 3.350000e-177 | 632.0 |
5 | TraesCS4A01G207000 | chr4D | 90.206 | 388 | 22 | 6 | 366 | 753 | 87722284 | 87721913 | 5.930000e-135 | 492.0 |
6 | TraesCS4A01G207000 | chr4D | 95.708 | 233 | 10 | 0 | 1 | 233 | 504533285 | 504533053 | 6.230000e-100 | 375.0 |
7 | TraesCS4A01G207000 | chr4B | 89.672 | 3931 | 297 | 59 | 2262 | 6151 | 124024011 | 124020149 | 0.000000e+00 | 4909.0 |
8 | TraesCS4A01G207000 | chr4B | 91.106 | 877 | 61 | 4 | 833 | 1703 | 124037872 | 124037007 | 0.000000e+00 | 1171.0 |
9 | TraesCS4A01G207000 | chr4B | 98.144 | 431 | 7 | 1 | 6153 | 6582 | 124020089 | 124019659 | 0.000000e+00 | 750.0 |
10 | TraesCS4A01G207000 | chr4B | 85.935 | 583 | 33 | 18 | 285 | 835 | 124038462 | 124037897 | 1.590000e-160 | 577.0 |
11 | TraesCS4A01G207000 | chr4B | 83.628 | 226 | 24 | 6 | 2016 | 2235 | 124024220 | 124024002 | 4.030000e-47 | 200.0 |
12 | TraesCS4A01G207000 | chr5B | 79.372 | 732 | 123 | 22 | 3128 | 3855 | 208523475 | 208524182 | 2.130000e-134 | 490.0 |
13 | TraesCS4A01G207000 | chr5B | 100.000 | 31 | 0 | 0 | 6051 | 6081 | 218214598 | 218214628 | 2.560000e-04 | 58.4 |
14 | TraesCS4A01G207000 | chr5A | 79.320 | 735 | 121 | 23 | 3127 | 3855 | 239530089 | 239530798 | 2.760000e-133 | 486.0 |
15 | TraesCS4A01G207000 | chr5A | 95.690 | 232 | 10 | 0 | 1 | 232 | 216565085 | 216564854 | 2.240000e-99 | 374.0 |
16 | TraesCS4A01G207000 | chr5A | 100.000 | 31 | 0 | 0 | 6051 | 6081 | 231302099 | 231302129 | 2.560000e-04 | 58.4 |
17 | TraesCS4A01G207000 | chr5D | 96.567 | 233 | 8 | 0 | 1 | 233 | 491285222 | 491285454 | 2.880000e-103 | 387.0 |
18 | TraesCS4A01G207000 | chr6D | 96.137 | 233 | 9 | 0 | 1 | 233 | 387398287 | 387398519 | 1.340000e-101 | 381.0 |
19 | TraesCS4A01G207000 | chr1B | 93.991 | 233 | 14 | 0 | 1 | 233 | 632977695 | 632977463 | 2.920000e-93 | 353.0 |
20 | TraesCS4A01G207000 | chr6B | 93.562 | 233 | 15 | 0 | 1 | 233 | 710074014 | 710074246 | 1.360000e-91 | 348.0 |
21 | TraesCS4A01G207000 | chr6B | 92.672 | 232 | 17 | 0 | 1 | 232 | 619098352 | 619098583 | 1.060000e-87 | 335.0 |
22 | TraesCS4A01G207000 | chr2B | 93.833 | 227 | 14 | 0 | 1 | 227 | 596922449 | 596922675 | 6.320000e-90 | 342.0 |
23 | TraesCS4A01G207000 | chrUn | 100.000 | 31 | 0 | 0 | 6051 | 6081 | 278887197 | 278887167 | 2.560000e-04 | 58.4 |
24 | TraesCS4A01G207000 | chrUn | 100.000 | 31 | 0 | 0 | 6051 | 6081 | 395191379 | 395191349 | 2.560000e-04 | 58.4 |
25 | TraesCS4A01G207000 | chr1A | 100.000 | 31 | 0 | 0 | 6051 | 6081 | 9174025 | 9174055 | 2.560000e-04 | 58.4 |
26 | TraesCS4A01G207000 | chr1A | 100.000 | 31 | 0 | 0 | 6051 | 6081 | 9201419 | 9201449 | 2.560000e-04 | 58.4 |
27 | TraesCS4A01G207000 | chr6A | 90.698 | 43 | 2 | 2 | 6000 | 6040 | 143976549 | 143976591 | 1.000000e-03 | 56.5 |
28 | TraesCS4A01G207000 | chr3D | 100.000 | 30 | 0 | 0 | 6051 | 6080 | 67480996 | 67480967 | 1.000000e-03 | 56.5 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4A01G207000 | chr4A | 500351424 | 500358005 | 6581 | True | 12155.000000 | 12155 | 100.000000 | 1 | 6582 | 1 | chr4A.!!$R1 | 6581 |
1 | TraesCS4A01G207000 | chr4D | 87715939 | 87722284 | 6345 | True | 3009.333333 | 7904 | 91.283000 | 366 | 6582 | 3 | chr4D.!!$R2 | 6216 |
2 | TraesCS4A01G207000 | chr4B | 124019659 | 124024220 | 4561 | True | 1953.000000 | 4909 | 90.481333 | 2016 | 6582 | 3 | chr4B.!!$R1 | 4566 |
3 | TraesCS4A01G207000 | chr4B | 124037007 | 124038462 | 1455 | True | 874.000000 | 1171 | 88.520500 | 285 | 1703 | 2 | chr4B.!!$R2 | 1418 |
4 | TraesCS4A01G207000 | chr5B | 208523475 | 208524182 | 707 | False | 490.000000 | 490 | 79.372000 | 3128 | 3855 | 1 | chr5B.!!$F1 | 727 |
5 | TraesCS4A01G207000 | chr5A | 239530089 | 239530798 | 709 | False | 486.000000 | 486 | 79.320000 | 3127 | 3855 | 1 | chr5A.!!$F2 | 728 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
145 | 146 | 0.036306 | GAACCGTGACCTGGATTGGT | 59.964 | 55.0 | 0.00 | 0.0 | 44.10 | 3.67 | F |
147 | 148 | 0.036306 | ACCGTGACCTGGATTGGTTC | 59.964 | 55.0 | 0.00 | 0.0 | 41.00 | 3.62 | F |
167 | 168 | 0.105039 | GGCTCCTCCGGATGTGTTAG | 59.895 | 60.0 | 3.57 | 0.0 | 0.00 | 2.34 | F |
1078 | 1205 | 0.107752 | GAGGAAGGCTGAGAAGGCTG | 60.108 | 60.0 | 2.25 | 0.0 | 44.26 | 4.85 | F |
1901 | 2033 | 1.091537 | ACACATTTATGAACGCGGGG | 58.908 | 50.0 | 12.47 | 0.0 | 0.00 | 5.73 | F |
3101 | 3241 | 0.250234 | CCCTGCTGATCGAGGAAACA | 59.750 | 55.0 | 6.78 | 0.0 | 0.00 | 2.83 | F |
4710 | 4914 | 0.918983 | AATGCCTCGGGGAGAAATCA | 59.081 | 50.0 | 4.80 | 0.0 | 33.58 | 2.57 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1763 | 1894 | 0.178990 | ACTGGGCCAAGACCTTGAAC | 60.179 | 55.000 | 16.25 | 3.34 | 42.93 | 3.18 | R |
1770 | 1901 | 0.984995 | AGTTAGGACTGGGCCAAGAC | 59.015 | 55.000 | 16.25 | 7.81 | 33.99 | 3.01 | R |
1822 | 1953 | 1.153005 | GGAAGCCTGATCCTGCCAG | 60.153 | 63.158 | 0.32 | 0.00 | 33.98 | 4.85 | R |
2917 | 3056 | 0.678950 | AACAAACCTTGGGCATTCCG | 59.321 | 50.000 | 0.00 | 0.00 | 38.76 | 4.30 | R |
3753 | 3943 | 1.454479 | CGGCCTCCCAAGATTGCAT | 60.454 | 57.895 | 0.00 | 0.00 | 0.00 | 3.96 | R |
4893 | 5097 | 2.037053 | CAAACGCCCAATGTCACCA | 58.963 | 52.632 | 0.00 | 0.00 | 0.00 | 4.17 | R |
6373 | 6765 | 0.323178 | CTGGATTGCTGCTCCTGGTT | 60.323 | 55.000 | 9.08 | 0.00 | 33.69 | 3.67 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
24 | 25 | 7.872113 | CTTATGCTTTTCTGGTAAAGGAGAT | 57.128 | 36.000 | 0.00 | 0.00 | 38.57 | 2.75 |
25 | 26 | 8.286191 | CTTATGCTTTTCTGGTAAAGGAGATT | 57.714 | 34.615 | 0.00 | 0.00 | 38.57 | 2.40 |
26 | 27 | 9.396022 | CTTATGCTTTTCTGGTAAAGGAGATTA | 57.604 | 33.333 | 0.00 | 0.00 | 38.57 | 1.75 |
27 | 28 | 7.872113 | ATGCTTTTCTGGTAAAGGAGATTAG | 57.128 | 36.000 | 0.00 | 0.00 | 38.57 | 1.73 |
28 | 29 | 7.016153 | TGCTTTTCTGGTAAAGGAGATTAGA | 57.984 | 36.000 | 0.00 | 0.00 | 36.00 | 2.10 |
29 | 30 | 7.633789 | TGCTTTTCTGGTAAAGGAGATTAGAT | 58.366 | 34.615 | 0.00 | 0.00 | 36.00 | 1.98 |
30 | 31 | 8.768397 | TGCTTTTCTGGTAAAGGAGATTAGATA | 58.232 | 33.333 | 0.00 | 0.00 | 36.00 | 1.98 |
31 | 32 | 9.785982 | GCTTTTCTGGTAAAGGAGATTAGATAT | 57.214 | 33.333 | 0.00 | 0.00 | 36.00 | 1.63 |
71 | 72 | 9.922305 | GTTAATCTTGTATTACTCATGTCTTGC | 57.078 | 33.333 | 0.00 | 0.00 | 0.00 | 4.01 |
72 | 73 | 6.834959 | ATCTTGTATTACTCATGTCTTGCG | 57.165 | 37.500 | 0.00 | 0.00 | 0.00 | 4.85 |
73 | 74 | 5.109210 | TCTTGTATTACTCATGTCTTGCGG | 58.891 | 41.667 | 0.00 | 0.00 | 0.00 | 5.69 |
74 | 75 | 4.465632 | TGTATTACTCATGTCTTGCGGT | 57.534 | 40.909 | 0.00 | 0.00 | 0.00 | 5.68 |
75 | 76 | 4.430007 | TGTATTACTCATGTCTTGCGGTC | 58.570 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
76 | 77 | 1.990799 | TTACTCATGTCTTGCGGTCG | 58.009 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
77 | 78 | 0.457853 | TACTCATGTCTTGCGGTCGC | 60.458 | 55.000 | 8.54 | 8.54 | 42.35 | 5.19 |
87 | 88 | 4.377471 | GCGGTCGCAAAATAAGGC | 57.623 | 55.556 | 10.67 | 0.00 | 41.49 | 4.35 |
88 | 89 | 1.226575 | GCGGTCGCAAAATAAGGCC | 60.227 | 57.895 | 10.67 | 0.00 | 41.49 | 5.19 |
89 | 90 | 1.928706 | GCGGTCGCAAAATAAGGCCA | 61.929 | 55.000 | 5.01 | 0.00 | 41.49 | 5.36 |
90 | 91 | 0.098728 | CGGTCGCAAAATAAGGCCAG | 59.901 | 55.000 | 5.01 | 0.00 | 0.00 | 4.85 |
91 | 92 | 0.179137 | GGTCGCAAAATAAGGCCAGC | 60.179 | 55.000 | 5.01 | 0.00 | 0.00 | 4.85 |
92 | 93 | 0.523335 | GTCGCAAAATAAGGCCAGCG | 60.523 | 55.000 | 5.01 | 8.98 | 45.79 | 5.18 |
96 | 97 | 3.273919 | GCAAAATAAGGCCAGCGATAG | 57.726 | 47.619 | 5.01 | 0.00 | 0.00 | 2.08 |
97 | 98 | 2.618709 | GCAAAATAAGGCCAGCGATAGT | 59.381 | 45.455 | 5.01 | 0.00 | 39.35 | 2.12 |
98 | 99 | 3.304057 | GCAAAATAAGGCCAGCGATAGTC | 60.304 | 47.826 | 5.01 | 0.00 | 39.35 | 2.59 |
99 | 100 | 4.130118 | CAAAATAAGGCCAGCGATAGTCT | 58.870 | 43.478 | 5.01 | 0.00 | 39.35 | 3.24 |
100 | 101 | 5.297547 | CAAAATAAGGCCAGCGATAGTCTA | 58.702 | 41.667 | 5.01 | 0.00 | 39.35 | 2.59 |
101 | 102 | 4.792521 | AATAAGGCCAGCGATAGTCTAG | 57.207 | 45.455 | 5.01 | 0.00 | 39.35 | 2.43 |
102 | 103 | 0.676736 | AAGGCCAGCGATAGTCTAGC | 59.323 | 55.000 | 5.01 | 0.00 | 39.35 | 3.42 |
103 | 104 | 0.178975 | AGGCCAGCGATAGTCTAGCT | 60.179 | 55.000 | 5.01 | 0.00 | 42.64 | 3.32 |
107 | 108 | 2.709170 | AGCGATAGTCTAGCTGCGT | 58.291 | 52.632 | 0.00 | 0.00 | 40.07 | 5.24 |
108 | 109 | 1.025812 | AGCGATAGTCTAGCTGCGTT | 58.974 | 50.000 | 0.00 | 0.00 | 40.07 | 4.84 |
109 | 110 | 1.002251 | AGCGATAGTCTAGCTGCGTTC | 60.002 | 52.381 | 0.00 | 0.00 | 40.07 | 3.95 |
110 | 111 | 1.664629 | CGATAGTCTAGCTGCGTTCG | 58.335 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
111 | 112 | 1.660614 | CGATAGTCTAGCTGCGTTCGG | 60.661 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
112 | 113 | 1.334243 | GATAGTCTAGCTGCGTTCGGT | 59.666 | 52.381 | 0.00 | 0.00 | 0.00 | 4.69 |
113 | 114 | 2.028420 | TAGTCTAGCTGCGTTCGGTA | 57.972 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
114 | 115 | 0.733729 | AGTCTAGCTGCGTTCGGTAG | 59.266 | 55.000 | 0.00 | 0.00 | 34.63 | 3.18 |
115 | 116 | 0.731417 | GTCTAGCTGCGTTCGGTAGA | 59.269 | 55.000 | 0.00 | 5.85 | 38.67 | 2.59 |
116 | 117 | 1.015109 | TCTAGCTGCGTTCGGTAGAG | 58.985 | 55.000 | 0.00 | 0.00 | 36.78 | 2.43 |
117 | 118 | 0.592754 | CTAGCTGCGTTCGGTAGAGC | 60.593 | 60.000 | 0.00 | 0.00 | 35.13 | 4.09 |
118 | 119 | 1.030488 | TAGCTGCGTTCGGTAGAGCT | 61.030 | 55.000 | 0.00 | 0.00 | 42.57 | 4.09 |
119 | 120 | 1.874466 | GCTGCGTTCGGTAGAGCTC | 60.874 | 63.158 | 5.27 | 5.27 | 0.00 | 4.09 |
120 | 121 | 1.506718 | CTGCGTTCGGTAGAGCTCA | 59.493 | 57.895 | 17.77 | 0.00 | 0.00 | 4.26 |
121 | 122 | 0.109272 | CTGCGTTCGGTAGAGCTCAA | 60.109 | 55.000 | 17.77 | 0.00 | 0.00 | 3.02 |
122 | 123 | 0.109272 | TGCGTTCGGTAGAGCTCAAG | 60.109 | 55.000 | 17.77 | 3.96 | 0.00 | 3.02 |
123 | 124 | 0.802607 | GCGTTCGGTAGAGCTCAAGG | 60.803 | 60.000 | 17.77 | 7.72 | 0.00 | 3.61 |
124 | 125 | 0.526662 | CGTTCGGTAGAGCTCAAGGT | 59.473 | 55.000 | 17.77 | 0.00 | 0.00 | 3.50 |
125 | 126 | 1.741706 | CGTTCGGTAGAGCTCAAGGTA | 59.258 | 52.381 | 17.77 | 0.00 | 0.00 | 3.08 |
126 | 127 | 2.223294 | CGTTCGGTAGAGCTCAAGGTAG | 60.223 | 54.545 | 17.77 | 2.08 | 0.00 | 3.18 |
127 | 128 | 3.015327 | GTTCGGTAGAGCTCAAGGTAGA | 58.985 | 50.000 | 17.77 | 4.57 | 0.00 | 2.59 |
128 | 129 | 3.361281 | TCGGTAGAGCTCAAGGTAGAA | 57.639 | 47.619 | 17.77 | 0.00 | 0.00 | 2.10 |
129 | 130 | 3.015327 | TCGGTAGAGCTCAAGGTAGAAC | 58.985 | 50.000 | 17.77 | 0.73 | 0.00 | 3.01 |
130 | 131 | 2.099427 | CGGTAGAGCTCAAGGTAGAACC | 59.901 | 54.545 | 17.77 | 8.61 | 38.99 | 3.62 |
131 | 132 | 2.099427 | GGTAGAGCTCAAGGTAGAACCG | 59.901 | 54.545 | 17.77 | 0.00 | 44.90 | 4.44 |
132 | 133 | 1.926108 | AGAGCTCAAGGTAGAACCGT | 58.074 | 50.000 | 17.77 | 0.00 | 44.90 | 4.83 |
133 | 134 | 1.546476 | AGAGCTCAAGGTAGAACCGTG | 59.454 | 52.381 | 17.77 | 5.76 | 46.97 | 4.94 |
139 | 140 | 0.974383 | AAGGTAGAACCGTGACCTGG | 59.026 | 55.000 | 0.00 | 0.00 | 44.90 | 4.45 |
140 | 141 | 0.113776 | AGGTAGAACCGTGACCTGGA | 59.886 | 55.000 | 0.00 | 0.00 | 44.90 | 3.86 |
141 | 142 | 1.192428 | GGTAGAACCGTGACCTGGAT | 58.808 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
142 | 143 | 1.553704 | GGTAGAACCGTGACCTGGATT | 59.446 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
143 | 144 | 2.618053 | GTAGAACCGTGACCTGGATTG | 58.382 | 52.381 | 0.00 | 0.00 | 0.00 | 2.67 |
144 | 145 | 0.324943 | AGAACCGTGACCTGGATTGG | 59.675 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
145 | 146 | 0.036306 | GAACCGTGACCTGGATTGGT | 59.964 | 55.000 | 0.00 | 0.00 | 44.10 | 3.67 |
146 | 147 | 0.476771 | AACCGTGACCTGGATTGGTT | 59.523 | 50.000 | 0.00 | 6.16 | 41.00 | 3.67 |
147 | 148 | 0.036306 | ACCGTGACCTGGATTGGTTC | 59.964 | 55.000 | 0.00 | 0.00 | 41.00 | 3.62 |
148 | 149 | 1.019278 | CCGTGACCTGGATTGGTTCG | 61.019 | 60.000 | 0.00 | 0.00 | 41.00 | 3.95 |
149 | 150 | 1.019278 | CGTGACCTGGATTGGTTCGG | 61.019 | 60.000 | 0.00 | 0.00 | 41.00 | 4.30 |
150 | 151 | 1.002624 | TGACCTGGATTGGTTCGGC | 60.003 | 57.895 | 0.00 | 0.00 | 41.00 | 5.54 |
151 | 152 | 1.299976 | GACCTGGATTGGTTCGGCT | 59.700 | 57.895 | 0.00 | 0.00 | 41.00 | 5.52 |
152 | 153 | 0.744771 | GACCTGGATTGGTTCGGCTC | 60.745 | 60.000 | 0.00 | 0.00 | 41.00 | 4.70 |
153 | 154 | 1.452108 | CCTGGATTGGTTCGGCTCC | 60.452 | 63.158 | 0.00 | 0.00 | 0.00 | 4.70 |
154 | 155 | 1.604378 | CTGGATTGGTTCGGCTCCT | 59.396 | 57.895 | 0.00 | 0.00 | 0.00 | 3.69 |
155 | 156 | 0.462759 | CTGGATTGGTTCGGCTCCTC | 60.463 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
156 | 157 | 1.153147 | GGATTGGTTCGGCTCCTCC | 60.153 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
165 | 166 | 2.990479 | GGCTCCTCCGGATGTGTT | 59.010 | 61.111 | 3.57 | 0.00 | 0.00 | 3.32 |
166 | 167 | 2.208527 | GGCTCCTCCGGATGTGTTA | 58.791 | 57.895 | 3.57 | 0.00 | 0.00 | 2.41 |
167 | 168 | 0.105039 | GGCTCCTCCGGATGTGTTAG | 59.895 | 60.000 | 3.57 | 0.00 | 0.00 | 2.34 |
168 | 169 | 1.112113 | GCTCCTCCGGATGTGTTAGA | 58.888 | 55.000 | 3.57 | 0.00 | 0.00 | 2.10 |
169 | 170 | 1.480954 | GCTCCTCCGGATGTGTTAGAA | 59.519 | 52.381 | 3.57 | 0.00 | 0.00 | 2.10 |
170 | 171 | 2.738964 | GCTCCTCCGGATGTGTTAGAAC | 60.739 | 54.545 | 3.57 | 0.00 | 0.00 | 3.01 |
171 | 172 | 2.761208 | CTCCTCCGGATGTGTTAGAACT | 59.239 | 50.000 | 3.57 | 0.00 | 0.00 | 3.01 |
172 | 173 | 2.496070 | TCCTCCGGATGTGTTAGAACTG | 59.504 | 50.000 | 3.57 | 0.00 | 0.00 | 3.16 |
173 | 174 | 2.496070 | CCTCCGGATGTGTTAGAACTGA | 59.504 | 50.000 | 3.57 | 0.00 | 0.00 | 3.41 |
174 | 175 | 3.133003 | CCTCCGGATGTGTTAGAACTGAT | 59.867 | 47.826 | 3.57 | 0.00 | 0.00 | 2.90 |
175 | 176 | 4.383118 | CCTCCGGATGTGTTAGAACTGATT | 60.383 | 45.833 | 3.57 | 0.00 | 0.00 | 2.57 |
176 | 177 | 4.503910 | TCCGGATGTGTTAGAACTGATTG | 58.496 | 43.478 | 0.00 | 0.00 | 0.00 | 2.67 |
177 | 178 | 3.063997 | CCGGATGTGTTAGAACTGATTGC | 59.936 | 47.826 | 0.00 | 0.00 | 0.00 | 3.56 |
178 | 179 | 3.242091 | CGGATGTGTTAGAACTGATTGCG | 60.242 | 47.826 | 0.00 | 0.00 | 0.00 | 4.85 |
179 | 180 | 3.932710 | GGATGTGTTAGAACTGATTGCGA | 59.067 | 43.478 | 0.00 | 0.00 | 0.00 | 5.10 |
180 | 181 | 4.572389 | GGATGTGTTAGAACTGATTGCGAT | 59.428 | 41.667 | 0.00 | 0.00 | 0.00 | 4.58 |
181 | 182 | 4.926860 | TGTGTTAGAACTGATTGCGATG | 57.073 | 40.909 | 0.00 | 0.00 | 0.00 | 3.84 |
182 | 183 | 3.684305 | TGTGTTAGAACTGATTGCGATGG | 59.316 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
183 | 184 | 3.932710 | GTGTTAGAACTGATTGCGATGGA | 59.067 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
184 | 185 | 4.572389 | GTGTTAGAACTGATTGCGATGGAT | 59.428 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
185 | 186 | 5.065218 | GTGTTAGAACTGATTGCGATGGATT | 59.935 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
186 | 187 | 5.065090 | TGTTAGAACTGATTGCGATGGATTG | 59.935 | 40.000 | 0.00 | 0.00 | 0.00 | 2.67 |
187 | 188 | 3.614092 | AGAACTGATTGCGATGGATTGT | 58.386 | 40.909 | 0.00 | 0.00 | 0.00 | 2.71 |
188 | 189 | 4.769688 | AGAACTGATTGCGATGGATTGTA | 58.230 | 39.130 | 0.00 | 0.00 | 0.00 | 2.41 |
189 | 190 | 4.572389 | AGAACTGATTGCGATGGATTGTAC | 59.428 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
190 | 191 | 4.142609 | ACTGATTGCGATGGATTGTACT | 57.857 | 40.909 | 0.00 | 0.00 | 0.00 | 2.73 |
191 | 192 | 3.873361 | ACTGATTGCGATGGATTGTACTG | 59.127 | 43.478 | 0.00 | 0.00 | 0.00 | 2.74 |
192 | 193 | 4.122046 | CTGATTGCGATGGATTGTACTGA | 58.878 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
193 | 194 | 4.707105 | TGATTGCGATGGATTGTACTGAT | 58.293 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
194 | 195 | 5.852827 | TGATTGCGATGGATTGTACTGATA | 58.147 | 37.500 | 0.00 | 0.00 | 0.00 | 2.15 |
195 | 196 | 6.466812 | TGATTGCGATGGATTGTACTGATAT | 58.533 | 36.000 | 0.00 | 0.00 | 0.00 | 1.63 |
196 | 197 | 6.936335 | TGATTGCGATGGATTGTACTGATATT | 59.064 | 34.615 | 0.00 | 0.00 | 0.00 | 1.28 |
197 | 198 | 8.093927 | TGATTGCGATGGATTGTACTGATATTA | 58.906 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
198 | 199 | 9.102757 | GATTGCGATGGATTGTACTGATATTAT | 57.897 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
199 | 200 | 8.479313 | TTGCGATGGATTGTACTGATATTATC | 57.521 | 34.615 | 0.00 | 0.00 | 0.00 | 1.75 |
200 | 201 | 7.840931 | TGCGATGGATTGTACTGATATTATCT | 58.159 | 34.615 | 5.33 | 0.00 | 0.00 | 1.98 |
201 | 202 | 7.761249 | TGCGATGGATTGTACTGATATTATCTG | 59.239 | 37.037 | 8.54 | 8.54 | 0.00 | 2.90 |
202 | 203 | 7.976175 | GCGATGGATTGTACTGATATTATCTGA | 59.024 | 37.037 | 15.16 | 0.13 | 33.12 | 3.27 |
203 | 204 | 9.513727 | CGATGGATTGTACTGATATTATCTGAG | 57.486 | 37.037 | 15.16 | 4.10 | 33.12 | 3.35 |
222 | 223 | 7.739498 | TCTGAGTAATACAAGTTTTGAACCC | 57.261 | 36.000 | 0.00 | 0.00 | 0.00 | 4.11 |
223 | 224 | 6.425721 | TCTGAGTAATACAAGTTTTGAACCCG | 59.574 | 38.462 | 0.00 | 0.00 | 0.00 | 5.28 |
224 | 225 | 5.049267 | TGAGTAATACAAGTTTTGAACCCGC | 60.049 | 40.000 | 0.00 | 0.00 | 0.00 | 6.13 |
225 | 226 | 4.822896 | AGTAATACAAGTTTTGAACCCGCA | 59.177 | 37.500 | 0.00 | 0.00 | 0.00 | 5.69 |
226 | 227 | 4.657436 | AATACAAGTTTTGAACCCGCAA | 57.343 | 36.364 | 0.00 | 0.00 | 0.00 | 4.85 |
227 | 228 | 4.657436 | ATACAAGTTTTGAACCCGCAAA | 57.343 | 36.364 | 0.00 | 0.00 | 36.08 | 3.68 |
228 | 229 | 3.320673 | ACAAGTTTTGAACCCGCAAAA | 57.679 | 38.095 | 0.00 | 0.00 | 43.31 | 2.44 |
229 | 230 | 3.665190 | ACAAGTTTTGAACCCGCAAAAA | 58.335 | 36.364 | 0.00 | 0.00 | 45.93 | 1.94 |
253 | 254 | 8.934023 | AAAAACATCAGAATTAAGGGAGTACA | 57.066 | 30.769 | 0.00 | 0.00 | 0.00 | 2.90 |
254 | 255 | 9.533831 | AAAAACATCAGAATTAAGGGAGTACAT | 57.466 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
255 | 256 | 9.533831 | AAAACATCAGAATTAAGGGAGTACATT | 57.466 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
256 | 257 | 8.511604 | AACATCAGAATTAAGGGAGTACATTG | 57.488 | 34.615 | 0.00 | 0.00 | 0.00 | 2.82 |
257 | 258 | 7.861629 | ACATCAGAATTAAGGGAGTACATTGA | 58.138 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
258 | 259 | 8.328758 | ACATCAGAATTAAGGGAGTACATTGAA | 58.671 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
259 | 260 | 9.177608 | CATCAGAATTAAGGGAGTACATTGAAA | 57.822 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
260 | 261 | 9.927081 | ATCAGAATTAAGGGAGTACATTGAAAT | 57.073 | 29.630 | 0.00 | 0.00 | 0.00 | 2.17 |
261 | 262 | 9.753674 | TCAGAATTAAGGGAGTACATTGAAATT | 57.246 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
264 | 265 | 9.503427 | GAATTAAGGGAGTACATTGAAATTTCG | 57.497 | 33.333 | 13.34 | 2.16 | 0.00 | 3.46 |
265 | 266 | 4.965119 | AGGGAGTACATTGAAATTTCGC | 57.035 | 40.909 | 13.34 | 0.00 | 0.00 | 4.70 |
266 | 267 | 4.331968 | AGGGAGTACATTGAAATTTCGCA | 58.668 | 39.130 | 13.34 | 3.18 | 0.00 | 5.10 |
267 | 268 | 4.949856 | AGGGAGTACATTGAAATTTCGCAT | 59.050 | 37.500 | 13.34 | 5.41 | 0.00 | 4.73 |
268 | 269 | 5.036737 | GGGAGTACATTGAAATTTCGCATG | 58.963 | 41.667 | 20.75 | 20.75 | 0.00 | 4.06 |
269 | 270 | 5.163663 | GGGAGTACATTGAAATTTCGCATGA | 60.164 | 40.000 | 25.83 | 13.44 | 0.00 | 3.07 |
270 | 271 | 6.321717 | GGAGTACATTGAAATTTCGCATGAA | 58.678 | 36.000 | 25.83 | 11.96 | 0.00 | 2.57 |
271 | 272 | 6.470235 | GGAGTACATTGAAATTTCGCATGAAG | 59.530 | 38.462 | 25.83 | 11.06 | 35.06 | 3.02 |
272 | 273 | 7.144722 | AGTACATTGAAATTTCGCATGAAGA | 57.855 | 32.000 | 25.83 | 13.91 | 35.06 | 2.87 |
273 | 274 | 7.246311 | AGTACATTGAAATTTCGCATGAAGAG | 58.754 | 34.615 | 25.83 | 10.81 | 35.06 | 2.85 |
274 | 275 | 6.017400 | ACATTGAAATTTCGCATGAAGAGT | 57.983 | 33.333 | 25.83 | 11.27 | 35.06 | 3.24 |
275 | 276 | 6.449698 | ACATTGAAATTTCGCATGAAGAGTT | 58.550 | 32.000 | 25.83 | 8.90 | 35.06 | 3.01 |
276 | 277 | 6.364165 | ACATTGAAATTTCGCATGAAGAGTTG | 59.636 | 34.615 | 25.83 | 9.60 | 35.06 | 3.16 |
277 | 278 | 4.229096 | TGAAATTTCGCATGAAGAGTTGC | 58.771 | 39.130 | 13.34 | 0.00 | 35.06 | 4.17 |
278 | 279 | 3.921119 | AATTTCGCATGAAGAGTTGCA | 57.079 | 38.095 | 0.00 | 0.00 | 38.80 | 4.08 |
279 | 280 | 4.445452 | AATTTCGCATGAAGAGTTGCAT | 57.555 | 36.364 | 0.00 | 0.00 | 38.80 | 3.96 |
280 | 281 | 5.565592 | AATTTCGCATGAAGAGTTGCATA | 57.434 | 34.783 | 0.00 | 0.00 | 38.80 | 3.14 |
281 | 282 | 4.340894 | TTTCGCATGAAGAGTTGCATAC | 57.659 | 40.909 | 0.00 | 0.00 | 38.80 | 2.39 |
282 | 283 | 2.971307 | TCGCATGAAGAGTTGCATACA | 58.029 | 42.857 | 0.00 | 0.00 | 38.80 | 2.29 |
283 | 284 | 2.672874 | TCGCATGAAGAGTTGCATACAC | 59.327 | 45.455 | 0.00 | 0.00 | 38.80 | 2.90 |
313 | 314 | 1.673920 | CTCCAGTACGAGGAGCTTCTC | 59.326 | 57.143 | 19.93 | 12.49 | 45.51 | 2.87 |
354 | 355 | 2.033194 | GGACGGAGAAACCAAGGCG | 61.033 | 63.158 | 0.00 | 0.00 | 38.90 | 5.52 |
617 | 635 | 1.201429 | TGCTCCCTTCCTCAACCTCC | 61.201 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
620 | 638 | 1.541368 | CCCTTCCTCAACCTCCCCA | 60.541 | 63.158 | 0.00 | 0.00 | 0.00 | 4.96 |
621 | 639 | 1.566298 | CCCTTCCTCAACCTCCCCAG | 61.566 | 65.000 | 0.00 | 0.00 | 0.00 | 4.45 |
696 | 714 | 2.043450 | CAGCTCTCCCTCCCGTCT | 60.043 | 66.667 | 0.00 | 0.00 | 0.00 | 4.18 |
698 | 716 | 2.277404 | GCTCTCCCTCCCGTCTCT | 59.723 | 66.667 | 0.00 | 0.00 | 0.00 | 3.10 |
700 | 718 | 1.919771 | CTCTCCCTCCCGTCTCTCT | 59.080 | 63.158 | 0.00 | 0.00 | 0.00 | 3.10 |
701 | 719 | 0.465460 | CTCTCCCTCCCGTCTCTCTG | 60.465 | 65.000 | 0.00 | 0.00 | 0.00 | 3.35 |
702 | 720 | 1.208844 | TCTCCCTCCCGTCTCTCTGT | 61.209 | 60.000 | 0.00 | 0.00 | 0.00 | 3.41 |
706 | 724 | 0.254747 | CCTCCCGTCTCTCTGTCTCT | 59.745 | 60.000 | 0.00 | 0.00 | 0.00 | 3.10 |
707 | 725 | 1.663695 | CTCCCGTCTCTCTGTCTCTC | 58.336 | 60.000 | 0.00 | 0.00 | 0.00 | 3.20 |
709 | 727 | 2.432874 | CTCCCGTCTCTCTGTCTCTCTA | 59.567 | 54.545 | 0.00 | 0.00 | 0.00 | 2.43 |
710 | 728 | 2.432874 | TCCCGTCTCTCTGTCTCTCTAG | 59.567 | 54.545 | 0.00 | 0.00 | 0.00 | 2.43 |
711 | 729 | 2.210116 | CCGTCTCTCTGTCTCTCTAGC | 58.790 | 57.143 | 0.00 | 0.00 | 0.00 | 3.42 |
712 | 730 | 2.210116 | CGTCTCTCTGTCTCTCTAGCC | 58.790 | 57.143 | 0.00 | 0.00 | 0.00 | 3.93 |
713 | 731 | 2.572290 | GTCTCTCTGTCTCTCTAGCCC | 58.428 | 57.143 | 0.00 | 0.00 | 0.00 | 5.19 |
714 | 732 | 2.172717 | GTCTCTCTGTCTCTCTAGCCCT | 59.827 | 54.545 | 0.00 | 0.00 | 0.00 | 5.19 |
715 | 733 | 2.849943 | TCTCTCTGTCTCTCTAGCCCTT | 59.150 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
716 | 734 | 4.041464 | TCTCTCTGTCTCTCTAGCCCTTA | 58.959 | 47.826 | 0.00 | 0.00 | 0.00 | 2.69 |
717 | 735 | 4.134563 | CTCTCTGTCTCTCTAGCCCTTAC | 58.865 | 52.174 | 0.00 | 0.00 | 0.00 | 2.34 |
748 | 766 | 3.943671 | TTGGTTTCCAGAACTCAAGGA | 57.056 | 42.857 | 0.00 | 0.00 | 33.81 | 3.36 |
755 | 788 | 3.107601 | TCCAGAACTCAAGGATCCGAAT | 58.892 | 45.455 | 5.98 | 0.00 | 0.00 | 3.34 |
760 | 793 | 2.911484 | ACTCAAGGATCCGAATTCTGC | 58.089 | 47.619 | 5.98 | 0.00 | 0.00 | 4.26 |
761 | 794 | 2.503356 | ACTCAAGGATCCGAATTCTGCT | 59.497 | 45.455 | 5.98 | 0.00 | 0.00 | 4.24 |
765 | 798 | 5.784177 | TCAAGGATCCGAATTCTGCTATAC | 58.216 | 41.667 | 5.98 | 0.00 | 0.00 | 1.47 |
793 | 826 | 7.019774 | TCAGCATTCTAATTTCTATGTGCAC | 57.980 | 36.000 | 10.75 | 10.75 | 34.01 | 4.57 |
802 | 835 | 6.432607 | AATTTCTATGTGCACAGTCATCTG | 57.567 | 37.500 | 25.84 | 9.44 | 46.18 | 2.90 |
831 | 864 | 7.540474 | TGGTCCTATAATTGTAGCCTTCTAG | 57.460 | 40.000 | 3.79 | 0.00 | 0.00 | 2.43 |
846 | 967 | 9.389755 | GTAGCCTTCTAGAAGAGAAAATGAATT | 57.610 | 33.333 | 30.17 | 6.92 | 43.75 | 2.17 |
876 | 997 | 9.244292 | TCACTGACAGTGTTACTATCTCTAAAT | 57.756 | 33.333 | 29.87 | 0.00 | 46.03 | 1.40 |
879 | 1000 | 9.509855 | CTGACAGTGTTACTATCTCTAAATCAC | 57.490 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
881 | 1002 | 6.973474 | ACAGTGTTACTATCTCTAAATCACGC | 59.027 | 38.462 | 0.00 | 0.00 | 0.00 | 5.34 |
885 | 1006 | 9.119329 | GTGTTACTATCTCTAAATCACGCTATG | 57.881 | 37.037 | 0.00 | 0.00 | 0.00 | 2.23 |
895 | 1016 | 4.946784 | AATCACGCTATGTTTGGAGAAC | 57.053 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
897 | 1018 | 3.937814 | TCACGCTATGTTTGGAGAACAT | 58.062 | 40.909 | 9.11 | 9.11 | 42.82 | 2.71 |
945 | 1066 | 3.948473 | GGTTTATCCTTTCAAGGCCTCTC | 59.052 | 47.826 | 5.23 | 0.00 | 46.06 | 3.20 |
946 | 1067 | 4.324641 | GGTTTATCCTTTCAAGGCCTCTCT | 60.325 | 45.833 | 5.23 | 0.00 | 46.06 | 3.10 |
949 | 1076 | 2.555664 | TCCTTTCAAGGCCTCTCTGAT | 58.444 | 47.619 | 5.23 | 0.00 | 46.06 | 2.90 |
968 | 1095 | 2.480853 | TTCGACGCGCCTTGAGCTAA | 62.481 | 55.000 | 5.73 | 0.00 | 40.39 | 3.09 |
1053 | 1180 | 2.034104 | TTGTGGCATCTCTGATGCTC | 57.966 | 50.000 | 25.29 | 19.67 | 44.02 | 4.26 |
1070 | 1197 | 0.979665 | CTCACCAAGAGGAAGGCTGA | 59.020 | 55.000 | 0.00 | 0.00 | 40.84 | 4.26 |
1071 | 1198 | 0.979665 | TCACCAAGAGGAAGGCTGAG | 59.020 | 55.000 | 0.00 | 0.00 | 38.69 | 3.35 |
1072 | 1199 | 0.979665 | CACCAAGAGGAAGGCTGAGA | 59.020 | 55.000 | 0.00 | 0.00 | 38.69 | 3.27 |
1073 | 1200 | 1.349026 | CACCAAGAGGAAGGCTGAGAA | 59.651 | 52.381 | 0.00 | 0.00 | 38.69 | 2.87 |
1074 | 1201 | 1.627834 | ACCAAGAGGAAGGCTGAGAAG | 59.372 | 52.381 | 0.00 | 0.00 | 38.69 | 2.85 |
1075 | 1202 | 1.065564 | CCAAGAGGAAGGCTGAGAAGG | 60.066 | 57.143 | 0.00 | 0.00 | 36.89 | 3.46 |
1076 | 1203 | 0.617935 | AAGAGGAAGGCTGAGAAGGC | 59.382 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1078 | 1205 | 0.107752 | GAGGAAGGCTGAGAAGGCTG | 60.108 | 60.000 | 2.25 | 0.00 | 44.26 | 4.85 |
1092 | 1219 | 1.450360 | AGGCTGAGAAGAAAAGGGGT | 58.550 | 50.000 | 0.00 | 0.00 | 0.00 | 4.95 |
1155 | 1282 | 1.218316 | CTACAGGTCCGAACAGCCC | 59.782 | 63.158 | 0.00 | 0.00 | 0.00 | 5.19 |
1161 | 1288 | 3.744719 | TCCGAACAGCCCGTCGAG | 61.745 | 66.667 | 0.00 | 0.00 | 0.00 | 4.04 |
1275 | 1402 | 4.144297 | TCATTTCAAGGGAAACAGAGGTG | 58.856 | 43.478 | 0.00 | 0.00 | 45.22 | 4.00 |
1338 | 1465 | 6.539103 | GGGAGTATGAGTGGAAAACTTACATC | 59.461 | 42.308 | 0.00 | 0.00 | 40.07 | 3.06 |
1490 | 1617 | 8.861086 | TCCACCAATGTACTAAAATTAGCAAAA | 58.139 | 29.630 | 0.13 | 0.00 | 34.09 | 2.44 |
1585 | 1712 | 5.819379 | TCTTCATGTATCTTCAACTGCCATC | 59.181 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1588 | 1715 | 3.785486 | TGTATCTTCAACTGCCATCTCG | 58.215 | 45.455 | 0.00 | 0.00 | 0.00 | 4.04 |
1643 | 1770 | 3.306225 | GGATGCTGGTTCTGCATTTTCAA | 60.306 | 43.478 | 12.24 | 0.00 | 46.13 | 2.69 |
1707 | 1834 | 2.042686 | ATGCATGCCACGACAATAGT | 57.957 | 45.000 | 16.68 | 0.00 | 0.00 | 2.12 |
1735 | 1862 | 7.118422 | ACATTCTCGTAAGTTCTGTAAAAGC | 57.882 | 36.000 | 0.00 | 0.00 | 39.48 | 3.51 |
1770 | 1901 | 1.153429 | GGTCCGATCCCGTTCAAGG | 60.153 | 63.158 | 0.00 | 0.00 | 0.00 | 3.61 |
1822 | 1953 | 2.242408 | ATTGGCAGGGGTTGGGATCC | 62.242 | 60.000 | 1.92 | 1.92 | 0.00 | 3.36 |
1901 | 2033 | 1.091537 | ACACATTTATGAACGCGGGG | 58.908 | 50.000 | 12.47 | 0.00 | 0.00 | 5.73 |
1935 | 2067 | 5.257262 | TGCTATGGCCATGTTACAAGTAAA | 58.743 | 37.500 | 29.04 | 2.08 | 37.74 | 2.01 |
1950 | 2082 | 8.424731 | GTTACAAGTAAATTTTTCCATGAAGCG | 58.575 | 33.333 | 0.00 | 0.00 | 0.00 | 4.68 |
1983 | 2115 | 9.793259 | ATGTTCCTATTCTTACTCTTTTGACAA | 57.207 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
2132 | 2269 | 8.952278 | AGTAGACTAACGATGGAGATATGAATC | 58.048 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
2176 | 2314 | 9.883142 | TTCTCCACATAAACATTGTTTTCTTTT | 57.117 | 25.926 | 19.15 | 0.00 | 0.00 | 2.27 |
2204 | 2342 | 5.927281 | ACATGGAATTGCTTCAGCTTAAT | 57.073 | 34.783 | 0.00 | 0.00 | 42.66 | 1.40 |
2440 | 2578 | 6.821031 | ATGAGGTCGGTTCACTATATACTC | 57.179 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
2441 | 2579 | 5.938279 | TGAGGTCGGTTCACTATATACTCT | 58.062 | 41.667 | 0.00 | 0.00 | 0.00 | 3.24 |
2464 | 2602 | 3.503363 | GTGCATCCATGAACTCAAGACAA | 59.497 | 43.478 | 0.00 | 0.00 | 33.39 | 3.18 |
2468 | 2606 | 4.687901 | TCCATGAACTCAAGACAACTGA | 57.312 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
2611 | 2750 | 9.905713 | TCAGAATAAAGCATACCTTATGTTTCT | 57.094 | 29.630 | 0.00 | 0.00 | 38.42 | 2.52 |
2624 | 2763 | 2.700722 | TGTTTCTGCTGTGTGGTACA | 57.299 | 45.000 | 0.00 | 0.00 | 37.78 | 2.90 |
2917 | 3056 | 3.560636 | ATGTATACAAGTGGGAGCACC | 57.439 | 47.619 | 10.14 | 0.00 | 40.81 | 5.01 |
2952 | 3091 | 5.363580 | AGGTTTGTTCAAATCCATGTTCACT | 59.636 | 36.000 | 5.11 | 0.00 | 0.00 | 3.41 |
3085 | 3225 | 1.484240 | GTTCATCTGCTCTACAGCCCT | 59.516 | 52.381 | 0.00 | 0.00 | 46.26 | 5.19 |
3101 | 3241 | 0.250234 | CCCTGCTGATCGAGGAAACA | 59.750 | 55.000 | 6.78 | 0.00 | 0.00 | 2.83 |
3563 | 3703 | 6.501781 | GGTGCCATCATCTATTTCTTTTCTG | 58.498 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3753 | 3943 | 1.949525 | GCTTGTCTTCCAGAAAGTGCA | 59.050 | 47.619 | 0.00 | 0.00 | 36.31 | 4.57 |
3942 | 4132 | 8.537016 | TGTTTATACTCCACTATTACTTGCTGT | 58.463 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
4103 | 4300 | 1.202428 | GGCGGGACATTCTCTGAGTAC | 60.202 | 57.143 | 4.32 | 0.00 | 0.00 | 2.73 |
4137 | 4334 | 1.302511 | GGTCGTGTTGGTGCTCCAT | 60.303 | 57.895 | 8.61 | 0.00 | 43.91 | 3.41 |
4163 | 4360 | 9.491675 | TTGTCTTGTTCGTTCATTAAGGTATAA | 57.508 | 29.630 | 0.00 | 0.00 | 0.00 | 0.98 |
4299 | 4503 | 4.705337 | AGAAAGATGTCTGACGAGGTAC | 57.295 | 45.455 | 2.98 | 0.00 | 0.00 | 3.34 |
4325 | 4529 | 1.681264 | GAAGGTGTTCCCCAAGTTGTG | 59.319 | 52.381 | 1.45 | 0.00 | 0.00 | 3.33 |
4411 | 4615 | 3.198068 | CATGTGTGTGGATAGTGCTACC | 58.802 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4437 | 4641 | 3.069872 | TCGGTAACTTTGCAGTTAGTCCA | 59.930 | 43.478 | 0.00 | 0.00 | 44.61 | 4.02 |
4520 | 4724 | 9.391006 | CCCTAAGCATAAAACTAGAAACACATA | 57.609 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
4575 | 4779 | 2.676748 | AGTGGATTTTGTCTTTGCCCA | 58.323 | 42.857 | 0.00 | 0.00 | 0.00 | 5.36 |
4710 | 4914 | 0.918983 | AATGCCTCGGGGAGAAATCA | 59.081 | 50.000 | 4.80 | 0.00 | 33.58 | 2.57 |
4782 | 4986 | 7.176690 | CCAAAACAAATGAGGTCTACAAGGTAT | 59.823 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
4893 | 5097 | 4.027437 | GAGGAATGAGGTGGTTCTACTCT | 58.973 | 47.826 | 0.00 | 0.00 | 32.58 | 3.24 |
4938 | 5142 | 1.952296 | GATGGCTGCCTCGAAATCATT | 59.048 | 47.619 | 21.03 | 0.00 | 0.00 | 2.57 |
4942 | 5146 | 1.739466 | GCTGCCTCGAAATCATTGACA | 59.261 | 47.619 | 0.00 | 0.00 | 0.00 | 3.58 |
5026 | 5230 | 4.249661 | GTTTCTTTTTCTGGCCAAACACA | 58.750 | 39.130 | 7.01 | 0.00 | 0.00 | 3.72 |
5070 | 5274 | 0.470766 | TACGACCAGGCCAAACAAGT | 59.529 | 50.000 | 5.01 | 0.00 | 0.00 | 3.16 |
5103 | 5307 | 4.318332 | TCTCTTCCTAACGAAGTACACGA | 58.682 | 43.478 | 16.81 | 0.00 | 45.00 | 4.35 |
5163 | 5367 | 1.298157 | ACAACATCATGGTCCACGCG | 61.298 | 55.000 | 3.53 | 3.53 | 0.00 | 6.01 |
5166 | 5370 | 1.227645 | CATCATGGTCCACGCGGAT | 60.228 | 57.895 | 12.47 | 0.00 | 45.33 | 4.18 |
5220 | 5424 | 2.580867 | GCGCACGGTGAGCTAGAG | 60.581 | 66.667 | 26.28 | 3.43 | 40.12 | 2.43 |
5250 | 5454 | 4.141869 | GCCTCAAAACAAGGGATTGCATAT | 60.142 | 41.667 | 0.00 | 0.00 | 34.26 | 1.78 |
5260 | 5464 | 6.041296 | ACAAGGGATTGCATATTCTGATTTCC | 59.959 | 38.462 | 0.00 | 0.00 | 0.00 | 3.13 |
5324 | 5528 | 2.184167 | CGTTGGCAAAGGTCCGTGT | 61.184 | 57.895 | 0.00 | 0.00 | 0.00 | 4.49 |
5351 | 5555 | 3.686241 | CCTGCACTCTGATCGAATTTTCA | 59.314 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
5361 | 5565 | 4.213270 | TGATCGAATTTTCAGTCGTTTGCT | 59.787 | 37.500 | 0.00 | 0.00 | 41.31 | 3.91 |
5388 | 5592 | 1.127766 | TGCACGCGTGATTGATTGTAC | 59.872 | 47.619 | 41.19 | 19.88 | 0.00 | 2.90 |
5394 | 5598 | 2.476185 | GCGTGATTGATTGTACTGTGCC | 60.476 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
5409 | 5613 | 1.539388 | TGTGCCGTTGCTCTAAATTGG | 59.461 | 47.619 | 0.00 | 0.00 | 38.71 | 3.16 |
5726 | 5952 | 7.255312 | GGATCGAGACAGACAGTATATTGAACT | 60.255 | 40.741 | 1.74 | 0.00 | 0.00 | 3.01 |
5728 | 5954 | 6.824196 | TCGAGACAGACAGTATATTGAACTCT | 59.176 | 38.462 | 1.74 | 0.00 | 0.00 | 3.24 |
5729 | 5955 | 7.985752 | TCGAGACAGACAGTATATTGAACTCTA | 59.014 | 37.037 | 1.74 | 0.00 | 0.00 | 2.43 |
5730 | 5956 | 8.279800 | CGAGACAGACAGTATATTGAACTCTAG | 58.720 | 40.741 | 1.74 | 0.00 | 0.00 | 2.43 |
5731 | 5957 | 9.116067 | GAGACAGACAGTATATTGAACTCTAGT | 57.884 | 37.037 | 1.74 | 0.00 | 0.00 | 2.57 |
5753 | 5980 | 9.181805 | CTAGTATGTGTACTTGATGATTTACCG | 57.818 | 37.037 | 0.00 | 0.00 | 41.35 | 4.02 |
5757 | 5984 | 5.992829 | TGTGTACTTGATGATTTACCGTTGT | 59.007 | 36.000 | 0.00 | 0.00 | 0.00 | 3.32 |
5769 | 5996 | 7.324935 | TGATTTACCGTTGTATTTCAGCTAGA | 58.675 | 34.615 | 0.00 | 0.00 | 0.00 | 2.43 |
5774 | 6001 | 5.127194 | ACCGTTGTATTTCAGCTAGAGATCA | 59.873 | 40.000 | 0.00 | 0.00 | 0.00 | 2.92 |
5834 | 6063 | 4.959596 | ATCTTGCTGTCATGATTCACAC | 57.040 | 40.909 | 0.00 | 0.00 | 34.56 | 3.82 |
5885 | 6114 | 6.997942 | AGGTTCTGGGTATTAGTTATCTCC | 57.002 | 41.667 | 0.00 | 0.00 | 0.00 | 3.71 |
5921 | 6150 | 7.816640 | TGAAACATCAGCTTTTAGAATGTACC | 58.183 | 34.615 | 0.00 | 0.00 | 0.00 | 3.34 |
5949 | 6178 | 9.180678 | CCACTGTTCACTGTTATAAAATGTTTC | 57.819 | 33.333 | 0.00 | 0.00 | 0.00 | 2.78 |
5950 | 6179 | 9.950680 | CACTGTTCACTGTTATAAAATGTTTCT | 57.049 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
6027 | 6358 | 7.318141 | TCCCTCTACAACTTTGTACTAAATCG | 58.682 | 38.462 | 0.00 | 0.00 | 42.35 | 3.34 |
6028 | 6359 | 6.035758 | CCCTCTACAACTTTGTACTAAATCGC | 59.964 | 42.308 | 0.00 | 0.00 | 42.35 | 4.58 |
6042 | 6373 | 6.526566 | ACTAAATCGCCGACAATTAATCTC | 57.473 | 37.500 | 0.00 | 0.00 | 0.00 | 2.75 |
6048 | 6379 | 3.243877 | CGCCGACAATTAATCTCAGAGTG | 59.756 | 47.826 | 0.00 | 0.00 | 0.00 | 3.51 |
6049 | 6380 | 4.184629 | GCCGACAATTAATCTCAGAGTGT | 58.815 | 43.478 | 0.00 | 0.00 | 0.00 | 3.55 |
6051 | 6382 | 5.810587 | GCCGACAATTAATCTCAGAGTGTAA | 59.189 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
6073 | 6404 | 9.093970 | TGTAACATCTTATAATTGTGAACGGAG | 57.906 | 33.333 | 2.86 | 0.00 | 0.00 | 4.63 |
6156 | 6544 | 2.033801 | GCCATGCTACACATAAGCCAAG | 59.966 | 50.000 | 0.00 | 0.00 | 39.30 | 3.61 |
6159 | 6547 | 4.158394 | CCATGCTACACATAAGCCAAGTTT | 59.842 | 41.667 | 0.00 | 0.00 | 39.30 | 2.66 |
6256 | 6647 | 8.635765 | TTTCTAACCATGCAGAAAAAGAGTAT | 57.364 | 30.769 | 10.98 | 0.00 | 37.72 | 2.12 |
6373 | 6765 | 7.351454 | ACCACCAGTAGGATTAAAACCCATATA | 59.649 | 37.037 | 0.00 | 0.00 | 38.69 | 0.86 |
6374 | 6766 | 8.221944 | CCACCAGTAGGATTAAAACCCATATAA | 58.778 | 37.037 | 0.00 | 0.00 | 38.69 | 0.98 |
6448 | 6840 | 2.419436 | CCCACCACAACCCAAAAAGAAC | 60.419 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 7.872113 | ATCTCCTTTACCAGAAAAGCATAAG | 57.128 | 36.000 | 0.00 | 0.00 | 35.53 | 1.73 |
1 | 2 | 9.396022 | CTAATCTCCTTTACCAGAAAAGCATAA | 57.604 | 33.333 | 0.00 | 0.00 | 35.53 | 1.90 |
2 | 3 | 8.768397 | TCTAATCTCCTTTACCAGAAAAGCATA | 58.232 | 33.333 | 0.00 | 0.00 | 35.53 | 3.14 |
3 | 4 | 7.633789 | TCTAATCTCCTTTACCAGAAAAGCAT | 58.366 | 34.615 | 0.00 | 0.00 | 35.53 | 3.79 |
4 | 5 | 7.016153 | TCTAATCTCCTTTACCAGAAAAGCA | 57.984 | 36.000 | 0.00 | 0.00 | 35.53 | 3.91 |
5 | 6 | 9.785982 | ATATCTAATCTCCTTTACCAGAAAAGC | 57.214 | 33.333 | 0.00 | 0.00 | 35.53 | 3.51 |
45 | 46 | 9.922305 | GCAAGACATGAGTAATACAAGATTAAC | 57.078 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
46 | 47 | 8.817100 | CGCAAGACATGAGTAATACAAGATTAA | 58.183 | 33.333 | 0.00 | 0.00 | 43.02 | 1.40 |
47 | 48 | 7.438160 | CCGCAAGACATGAGTAATACAAGATTA | 59.562 | 37.037 | 0.00 | 0.00 | 43.02 | 1.75 |
48 | 49 | 6.258727 | CCGCAAGACATGAGTAATACAAGATT | 59.741 | 38.462 | 0.00 | 0.00 | 43.02 | 2.40 |
49 | 50 | 5.755375 | CCGCAAGACATGAGTAATACAAGAT | 59.245 | 40.000 | 0.00 | 0.00 | 43.02 | 2.40 |
50 | 51 | 5.109210 | CCGCAAGACATGAGTAATACAAGA | 58.891 | 41.667 | 0.00 | 0.00 | 43.02 | 3.02 |
51 | 52 | 4.870426 | ACCGCAAGACATGAGTAATACAAG | 59.130 | 41.667 | 0.00 | 0.00 | 43.02 | 3.16 |
52 | 53 | 4.827692 | ACCGCAAGACATGAGTAATACAA | 58.172 | 39.130 | 0.00 | 0.00 | 43.02 | 2.41 |
53 | 54 | 4.430007 | GACCGCAAGACATGAGTAATACA | 58.570 | 43.478 | 0.00 | 0.00 | 43.02 | 2.29 |
54 | 55 | 3.486108 | CGACCGCAAGACATGAGTAATAC | 59.514 | 47.826 | 0.00 | 0.00 | 43.02 | 1.89 |
55 | 56 | 3.702330 | CGACCGCAAGACATGAGTAATA | 58.298 | 45.455 | 0.00 | 0.00 | 43.02 | 0.98 |
56 | 57 | 2.540515 | CGACCGCAAGACATGAGTAAT | 58.459 | 47.619 | 0.00 | 0.00 | 43.02 | 1.89 |
57 | 58 | 1.990799 | CGACCGCAAGACATGAGTAA | 58.009 | 50.000 | 0.00 | 0.00 | 43.02 | 2.24 |
58 | 59 | 0.457853 | GCGACCGCAAGACATGAGTA | 60.458 | 55.000 | 9.73 | 0.00 | 41.49 | 2.59 |
59 | 60 | 1.738099 | GCGACCGCAAGACATGAGT | 60.738 | 57.895 | 9.73 | 0.00 | 41.49 | 3.41 |
60 | 61 | 3.084579 | GCGACCGCAAGACATGAG | 58.915 | 61.111 | 9.73 | 0.00 | 41.49 | 2.90 |
70 | 71 | 1.226575 | GGCCTTATTTTGCGACCGC | 60.227 | 57.895 | 7.53 | 7.53 | 42.35 | 5.68 |
71 | 72 | 0.098728 | CTGGCCTTATTTTGCGACCG | 59.901 | 55.000 | 3.32 | 0.00 | 0.00 | 4.79 |
72 | 73 | 0.179137 | GCTGGCCTTATTTTGCGACC | 60.179 | 55.000 | 3.32 | 0.00 | 0.00 | 4.79 |
73 | 74 | 0.523335 | CGCTGGCCTTATTTTGCGAC | 60.523 | 55.000 | 3.32 | 0.00 | 45.15 | 5.19 |
74 | 75 | 1.800032 | CGCTGGCCTTATTTTGCGA | 59.200 | 52.632 | 3.32 | 0.00 | 45.15 | 5.10 |
75 | 76 | 0.381801 | ATCGCTGGCCTTATTTTGCG | 59.618 | 50.000 | 3.32 | 8.80 | 43.95 | 4.85 |
76 | 77 | 2.618709 | ACTATCGCTGGCCTTATTTTGC | 59.381 | 45.455 | 3.32 | 0.00 | 0.00 | 3.68 |
77 | 78 | 4.130118 | AGACTATCGCTGGCCTTATTTTG | 58.870 | 43.478 | 3.32 | 0.00 | 0.00 | 2.44 |
78 | 79 | 4.423625 | AGACTATCGCTGGCCTTATTTT | 57.576 | 40.909 | 3.32 | 0.00 | 0.00 | 1.82 |
79 | 80 | 4.561734 | GCTAGACTATCGCTGGCCTTATTT | 60.562 | 45.833 | 3.32 | 0.00 | 34.24 | 1.40 |
80 | 81 | 3.056465 | GCTAGACTATCGCTGGCCTTATT | 60.056 | 47.826 | 3.32 | 0.00 | 34.24 | 1.40 |
81 | 82 | 2.494073 | GCTAGACTATCGCTGGCCTTAT | 59.506 | 50.000 | 3.32 | 0.00 | 34.24 | 1.73 |
82 | 83 | 1.887198 | GCTAGACTATCGCTGGCCTTA | 59.113 | 52.381 | 3.32 | 0.00 | 34.24 | 2.69 |
83 | 84 | 0.676736 | GCTAGACTATCGCTGGCCTT | 59.323 | 55.000 | 3.32 | 0.00 | 34.24 | 4.35 |
84 | 85 | 0.178975 | AGCTAGACTATCGCTGGCCT | 60.179 | 55.000 | 3.32 | 0.00 | 40.29 | 5.19 |
85 | 86 | 0.038709 | CAGCTAGACTATCGCTGGCC | 60.039 | 60.000 | 13.45 | 0.00 | 45.47 | 5.36 |
86 | 87 | 3.488048 | CAGCTAGACTATCGCTGGC | 57.512 | 57.895 | 13.45 | 0.00 | 45.47 | 4.85 |
89 | 90 | 1.002251 | GAACGCAGCTAGACTATCGCT | 60.002 | 52.381 | 0.00 | 0.00 | 0.00 | 4.93 |
90 | 91 | 1.400550 | GAACGCAGCTAGACTATCGC | 58.599 | 55.000 | 0.00 | 0.00 | 0.00 | 4.58 |
91 | 92 | 1.660614 | CCGAACGCAGCTAGACTATCG | 60.661 | 57.143 | 0.00 | 0.81 | 0.00 | 2.92 |
92 | 93 | 1.334243 | ACCGAACGCAGCTAGACTATC | 59.666 | 52.381 | 0.00 | 0.00 | 0.00 | 2.08 |
93 | 94 | 1.390565 | ACCGAACGCAGCTAGACTAT | 58.609 | 50.000 | 0.00 | 0.00 | 0.00 | 2.12 |
94 | 95 | 1.938577 | CTACCGAACGCAGCTAGACTA | 59.061 | 52.381 | 0.00 | 0.00 | 0.00 | 2.59 |
95 | 96 | 0.733729 | CTACCGAACGCAGCTAGACT | 59.266 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
96 | 97 | 0.731417 | TCTACCGAACGCAGCTAGAC | 59.269 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 |
97 | 98 | 1.015109 | CTCTACCGAACGCAGCTAGA | 58.985 | 55.000 | 0.00 | 0.00 | 0.00 | 2.43 |
98 | 99 | 0.592754 | GCTCTACCGAACGCAGCTAG | 60.593 | 60.000 | 0.00 | 0.00 | 0.00 | 3.42 |
99 | 100 | 1.030488 | AGCTCTACCGAACGCAGCTA | 61.030 | 55.000 | 0.00 | 0.00 | 38.69 | 3.32 |
100 | 101 | 2.182030 | GCTCTACCGAACGCAGCT | 59.818 | 61.111 | 0.00 | 0.00 | 0.00 | 4.24 |
101 | 102 | 1.874466 | GAGCTCTACCGAACGCAGC | 60.874 | 63.158 | 6.43 | 0.00 | 0.00 | 5.25 |
102 | 103 | 0.109272 | TTGAGCTCTACCGAACGCAG | 60.109 | 55.000 | 16.19 | 0.00 | 0.00 | 5.18 |
103 | 104 | 0.109272 | CTTGAGCTCTACCGAACGCA | 60.109 | 55.000 | 16.19 | 0.00 | 0.00 | 5.24 |
104 | 105 | 0.802607 | CCTTGAGCTCTACCGAACGC | 60.803 | 60.000 | 16.19 | 0.00 | 0.00 | 4.84 |
105 | 106 | 0.526662 | ACCTTGAGCTCTACCGAACG | 59.473 | 55.000 | 16.19 | 0.00 | 0.00 | 3.95 |
106 | 107 | 3.015327 | TCTACCTTGAGCTCTACCGAAC | 58.985 | 50.000 | 16.19 | 0.00 | 0.00 | 3.95 |
107 | 108 | 3.361281 | TCTACCTTGAGCTCTACCGAA | 57.639 | 47.619 | 16.19 | 0.00 | 0.00 | 4.30 |
108 | 109 | 3.015327 | GTTCTACCTTGAGCTCTACCGA | 58.985 | 50.000 | 16.19 | 1.33 | 0.00 | 4.69 |
109 | 110 | 2.099427 | GGTTCTACCTTGAGCTCTACCG | 59.901 | 54.545 | 16.19 | 2.28 | 34.73 | 4.02 |
110 | 111 | 2.099427 | CGGTTCTACCTTGAGCTCTACC | 59.901 | 54.545 | 16.19 | 8.17 | 35.66 | 3.18 |
111 | 112 | 2.754002 | ACGGTTCTACCTTGAGCTCTAC | 59.246 | 50.000 | 16.19 | 0.58 | 35.66 | 2.59 |
112 | 113 | 2.753452 | CACGGTTCTACCTTGAGCTCTA | 59.247 | 50.000 | 16.19 | 6.47 | 39.65 | 2.43 |
113 | 114 | 1.546476 | CACGGTTCTACCTTGAGCTCT | 59.454 | 52.381 | 16.19 | 0.00 | 39.65 | 4.09 |
114 | 115 | 1.544691 | TCACGGTTCTACCTTGAGCTC | 59.455 | 52.381 | 6.82 | 6.82 | 40.99 | 4.09 |
115 | 116 | 1.272769 | GTCACGGTTCTACCTTGAGCT | 59.727 | 52.381 | 5.40 | 0.00 | 45.57 | 4.09 |
116 | 117 | 1.711206 | GTCACGGTTCTACCTTGAGC | 58.289 | 55.000 | 5.40 | 0.00 | 45.57 | 4.26 |
117 | 118 | 1.893801 | AGGTCACGGTTCTACCTTGAG | 59.106 | 52.381 | 5.40 | 0.00 | 45.57 | 3.02 |
118 | 119 | 1.616865 | CAGGTCACGGTTCTACCTTGA | 59.383 | 52.381 | 1.34 | 1.34 | 43.23 | 3.02 |
119 | 120 | 1.337823 | CCAGGTCACGGTTCTACCTTG | 60.338 | 57.143 | 4.30 | 0.00 | 41.75 | 3.61 |
120 | 121 | 0.974383 | CCAGGTCACGGTTCTACCTT | 59.026 | 55.000 | 4.30 | 0.00 | 41.75 | 3.50 |
121 | 122 | 0.113776 | TCCAGGTCACGGTTCTACCT | 59.886 | 55.000 | 1.67 | 1.67 | 44.54 | 3.08 |
122 | 123 | 1.192428 | ATCCAGGTCACGGTTCTACC | 58.808 | 55.000 | 0.00 | 0.00 | 34.05 | 3.18 |
123 | 124 | 2.618053 | CAATCCAGGTCACGGTTCTAC | 58.382 | 52.381 | 0.00 | 0.00 | 0.00 | 2.59 |
124 | 125 | 1.553248 | CCAATCCAGGTCACGGTTCTA | 59.447 | 52.381 | 0.00 | 0.00 | 0.00 | 2.10 |
125 | 126 | 0.324943 | CCAATCCAGGTCACGGTTCT | 59.675 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
126 | 127 | 0.036306 | ACCAATCCAGGTCACGGTTC | 59.964 | 55.000 | 0.00 | 0.00 | 37.28 | 3.62 |
127 | 128 | 0.476771 | AACCAATCCAGGTCACGGTT | 59.523 | 50.000 | 0.00 | 0.00 | 42.25 | 4.44 |
128 | 129 | 0.036306 | GAACCAATCCAGGTCACGGT | 59.964 | 55.000 | 0.00 | 0.00 | 42.25 | 4.83 |
129 | 130 | 1.019278 | CGAACCAATCCAGGTCACGG | 61.019 | 60.000 | 0.00 | 0.00 | 42.25 | 4.94 |
130 | 131 | 1.019278 | CCGAACCAATCCAGGTCACG | 61.019 | 60.000 | 0.00 | 0.00 | 42.25 | 4.35 |
131 | 132 | 1.305930 | GCCGAACCAATCCAGGTCAC | 61.306 | 60.000 | 0.00 | 0.00 | 42.25 | 3.67 |
132 | 133 | 1.002624 | GCCGAACCAATCCAGGTCA | 60.003 | 57.895 | 0.00 | 0.00 | 42.25 | 4.02 |
133 | 134 | 0.744771 | GAGCCGAACCAATCCAGGTC | 60.745 | 60.000 | 0.00 | 0.00 | 42.25 | 3.85 |
134 | 135 | 1.299976 | GAGCCGAACCAATCCAGGT | 59.700 | 57.895 | 0.00 | 0.00 | 45.91 | 4.00 |
135 | 136 | 1.452108 | GGAGCCGAACCAATCCAGG | 60.452 | 63.158 | 0.00 | 0.00 | 0.00 | 4.45 |
136 | 137 | 0.462759 | GAGGAGCCGAACCAATCCAG | 60.463 | 60.000 | 0.00 | 0.00 | 34.08 | 3.86 |
137 | 138 | 1.602237 | GAGGAGCCGAACCAATCCA | 59.398 | 57.895 | 0.00 | 0.00 | 34.08 | 3.41 |
138 | 139 | 1.153147 | GGAGGAGCCGAACCAATCC | 60.153 | 63.158 | 0.00 | 0.00 | 0.00 | 3.01 |
139 | 140 | 4.542075 | GGAGGAGCCGAACCAATC | 57.458 | 61.111 | 0.00 | 0.00 | 0.00 | 2.67 |
153 | 154 | 3.868757 | TCAGTTCTAACACATCCGGAG | 57.131 | 47.619 | 11.34 | 4.72 | 0.00 | 4.63 |
154 | 155 | 4.503910 | CAATCAGTTCTAACACATCCGGA | 58.496 | 43.478 | 6.61 | 6.61 | 0.00 | 5.14 |
155 | 156 | 3.063997 | GCAATCAGTTCTAACACATCCGG | 59.936 | 47.826 | 0.00 | 0.00 | 0.00 | 5.14 |
156 | 157 | 3.242091 | CGCAATCAGTTCTAACACATCCG | 60.242 | 47.826 | 0.00 | 0.00 | 0.00 | 4.18 |
157 | 158 | 3.932710 | TCGCAATCAGTTCTAACACATCC | 59.067 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
158 | 159 | 5.496387 | CATCGCAATCAGTTCTAACACATC | 58.504 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
159 | 160 | 4.333649 | CCATCGCAATCAGTTCTAACACAT | 59.666 | 41.667 | 0.00 | 0.00 | 0.00 | 3.21 |
160 | 161 | 3.684305 | CCATCGCAATCAGTTCTAACACA | 59.316 | 43.478 | 0.00 | 0.00 | 0.00 | 3.72 |
161 | 162 | 3.932710 | TCCATCGCAATCAGTTCTAACAC | 59.067 | 43.478 | 0.00 | 0.00 | 0.00 | 3.32 |
162 | 163 | 4.200838 | TCCATCGCAATCAGTTCTAACA | 57.799 | 40.909 | 0.00 | 0.00 | 0.00 | 2.41 |
163 | 164 | 5.065218 | ACAATCCATCGCAATCAGTTCTAAC | 59.935 | 40.000 | 0.00 | 0.00 | 0.00 | 2.34 |
164 | 165 | 5.185454 | ACAATCCATCGCAATCAGTTCTAA | 58.815 | 37.500 | 0.00 | 0.00 | 0.00 | 2.10 |
165 | 166 | 4.769688 | ACAATCCATCGCAATCAGTTCTA | 58.230 | 39.130 | 0.00 | 0.00 | 0.00 | 2.10 |
166 | 167 | 3.614092 | ACAATCCATCGCAATCAGTTCT | 58.386 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
167 | 168 | 4.572389 | AGTACAATCCATCGCAATCAGTTC | 59.428 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
168 | 169 | 4.333649 | CAGTACAATCCATCGCAATCAGTT | 59.666 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
169 | 170 | 3.873361 | CAGTACAATCCATCGCAATCAGT | 59.127 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
170 | 171 | 4.122046 | TCAGTACAATCCATCGCAATCAG | 58.878 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
171 | 172 | 4.135747 | TCAGTACAATCCATCGCAATCA | 57.864 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
172 | 173 | 6.974932 | ATATCAGTACAATCCATCGCAATC | 57.025 | 37.500 | 0.00 | 0.00 | 0.00 | 2.67 |
173 | 174 | 9.102757 | GATAATATCAGTACAATCCATCGCAAT | 57.897 | 33.333 | 0.00 | 0.00 | 0.00 | 3.56 |
174 | 175 | 8.314021 | AGATAATATCAGTACAATCCATCGCAA | 58.686 | 33.333 | 2.84 | 0.00 | 0.00 | 4.85 |
175 | 176 | 7.761249 | CAGATAATATCAGTACAATCCATCGCA | 59.239 | 37.037 | 2.84 | 0.00 | 0.00 | 5.10 |
176 | 177 | 7.976175 | TCAGATAATATCAGTACAATCCATCGC | 59.024 | 37.037 | 2.84 | 0.00 | 0.00 | 4.58 |
177 | 178 | 9.513727 | CTCAGATAATATCAGTACAATCCATCG | 57.486 | 37.037 | 2.84 | 0.00 | 0.00 | 3.84 |
196 | 197 | 9.444600 | GGGTTCAAAACTTGTATTACTCAGATA | 57.555 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
197 | 198 | 7.119262 | CGGGTTCAAAACTTGTATTACTCAGAT | 59.881 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
198 | 199 | 6.425721 | CGGGTTCAAAACTTGTATTACTCAGA | 59.574 | 38.462 | 0.00 | 0.00 | 0.00 | 3.27 |
199 | 200 | 6.599437 | CGGGTTCAAAACTTGTATTACTCAG | 58.401 | 40.000 | 0.00 | 0.00 | 0.00 | 3.35 |
200 | 201 | 5.049267 | GCGGGTTCAAAACTTGTATTACTCA | 60.049 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
201 | 202 | 5.049267 | TGCGGGTTCAAAACTTGTATTACTC | 60.049 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
202 | 203 | 4.822896 | TGCGGGTTCAAAACTTGTATTACT | 59.177 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
203 | 204 | 5.110940 | TGCGGGTTCAAAACTTGTATTAC | 57.889 | 39.130 | 0.00 | 0.00 | 0.00 | 1.89 |
204 | 205 | 5.769484 | TTGCGGGTTCAAAACTTGTATTA | 57.231 | 34.783 | 0.00 | 0.00 | 0.00 | 0.98 |
205 | 206 | 4.657436 | TTGCGGGTTCAAAACTTGTATT | 57.343 | 36.364 | 0.00 | 0.00 | 0.00 | 1.89 |
206 | 207 | 4.657436 | TTTGCGGGTTCAAAACTTGTAT | 57.343 | 36.364 | 0.00 | 0.00 | 33.47 | 2.29 |
207 | 208 | 4.451629 | TTTTGCGGGTTCAAAACTTGTA | 57.548 | 36.364 | 0.00 | 0.00 | 39.99 | 2.41 |
208 | 209 | 3.320673 | TTTTGCGGGTTCAAAACTTGT | 57.679 | 38.095 | 0.00 | 0.00 | 39.99 | 3.16 |
228 | 229 | 8.934023 | TGTACTCCCTTAATTCTGATGTTTTT | 57.066 | 30.769 | 0.00 | 0.00 | 0.00 | 1.94 |
229 | 230 | 9.533831 | AATGTACTCCCTTAATTCTGATGTTTT | 57.466 | 29.630 | 0.00 | 0.00 | 0.00 | 2.43 |
230 | 231 | 8.960591 | CAATGTACTCCCTTAATTCTGATGTTT | 58.039 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
231 | 232 | 8.328758 | TCAATGTACTCCCTTAATTCTGATGTT | 58.671 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
232 | 233 | 7.861629 | TCAATGTACTCCCTTAATTCTGATGT | 58.138 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
233 | 234 | 8.737168 | TTCAATGTACTCCCTTAATTCTGATG | 57.263 | 34.615 | 0.00 | 0.00 | 0.00 | 3.07 |
234 | 235 | 9.927081 | ATTTCAATGTACTCCCTTAATTCTGAT | 57.073 | 29.630 | 0.00 | 0.00 | 0.00 | 2.90 |
235 | 236 | 9.753674 | AATTTCAATGTACTCCCTTAATTCTGA | 57.246 | 29.630 | 0.00 | 0.00 | 0.00 | 3.27 |
238 | 239 | 9.503427 | CGAAATTTCAATGTACTCCCTTAATTC | 57.497 | 33.333 | 17.99 | 0.00 | 0.00 | 2.17 |
239 | 240 | 7.973944 | GCGAAATTTCAATGTACTCCCTTAATT | 59.026 | 33.333 | 17.99 | 0.00 | 0.00 | 1.40 |
240 | 241 | 7.122055 | TGCGAAATTTCAATGTACTCCCTTAAT | 59.878 | 33.333 | 17.99 | 0.00 | 0.00 | 1.40 |
241 | 242 | 6.431543 | TGCGAAATTTCAATGTACTCCCTTAA | 59.568 | 34.615 | 17.99 | 0.00 | 0.00 | 1.85 |
242 | 243 | 5.941058 | TGCGAAATTTCAATGTACTCCCTTA | 59.059 | 36.000 | 17.99 | 0.00 | 0.00 | 2.69 |
243 | 244 | 4.764823 | TGCGAAATTTCAATGTACTCCCTT | 59.235 | 37.500 | 17.99 | 0.00 | 0.00 | 3.95 |
244 | 245 | 4.331968 | TGCGAAATTTCAATGTACTCCCT | 58.668 | 39.130 | 17.99 | 0.00 | 0.00 | 4.20 |
245 | 246 | 4.695217 | TGCGAAATTTCAATGTACTCCC | 57.305 | 40.909 | 17.99 | 0.00 | 0.00 | 4.30 |
246 | 247 | 5.879237 | TCATGCGAAATTTCAATGTACTCC | 58.121 | 37.500 | 21.43 | 2.31 | 0.00 | 3.85 |
247 | 248 | 7.243487 | TCTTCATGCGAAATTTCAATGTACTC | 58.757 | 34.615 | 21.43 | 3.65 | 0.00 | 2.59 |
248 | 249 | 7.094634 | ACTCTTCATGCGAAATTTCAATGTACT | 60.095 | 33.333 | 21.43 | 6.90 | 0.00 | 2.73 |
249 | 250 | 7.023575 | ACTCTTCATGCGAAATTTCAATGTAC | 58.976 | 34.615 | 21.43 | 6.23 | 0.00 | 2.90 |
250 | 251 | 7.144722 | ACTCTTCATGCGAAATTTCAATGTA | 57.855 | 32.000 | 21.43 | 15.23 | 0.00 | 2.29 |
251 | 252 | 6.017400 | ACTCTTCATGCGAAATTTCAATGT | 57.983 | 33.333 | 21.43 | 7.47 | 0.00 | 2.71 |
252 | 253 | 6.669032 | GCAACTCTTCATGCGAAATTTCAATG | 60.669 | 38.462 | 17.99 | 18.24 | 32.17 | 2.82 |
253 | 254 | 5.346822 | GCAACTCTTCATGCGAAATTTCAAT | 59.653 | 36.000 | 17.99 | 8.08 | 32.17 | 2.57 |
254 | 255 | 4.681025 | GCAACTCTTCATGCGAAATTTCAA | 59.319 | 37.500 | 17.99 | 6.05 | 32.17 | 2.69 |
255 | 256 | 4.229096 | GCAACTCTTCATGCGAAATTTCA | 58.771 | 39.130 | 17.99 | 0.43 | 32.17 | 2.69 |
256 | 257 | 4.229096 | TGCAACTCTTCATGCGAAATTTC | 58.771 | 39.130 | 8.20 | 8.20 | 45.47 | 2.17 |
257 | 258 | 4.241590 | TGCAACTCTTCATGCGAAATTT | 57.758 | 36.364 | 0.00 | 0.00 | 45.47 | 1.82 |
258 | 259 | 3.921119 | TGCAACTCTTCATGCGAAATT | 57.079 | 38.095 | 0.00 | 0.00 | 45.47 | 1.82 |
259 | 260 | 4.395854 | TGTATGCAACTCTTCATGCGAAAT | 59.604 | 37.500 | 0.00 | 0.00 | 45.47 | 2.17 |
260 | 261 | 3.750652 | TGTATGCAACTCTTCATGCGAAA | 59.249 | 39.130 | 0.00 | 0.00 | 45.47 | 3.46 |
261 | 262 | 3.125146 | GTGTATGCAACTCTTCATGCGAA | 59.875 | 43.478 | 0.00 | 0.00 | 45.47 | 4.70 |
262 | 263 | 2.672874 | GTGTATGCAACTCTTCATGCGA | 59.327 | 45.455 | 0.00 | 0.00 | 45.47 | 5.10 |
263 | 264 | 2.535534 | CGTGTATGCAACTCTTCATGCG | 60.536 | 50.000 | 0.00 | 0.00 | 45.47 | 4.73 |
264 | 265 | 2.416547 | ACGTGTATGCAACTCTTCATGC | 59.583 | 45.455 | 0.00 | 0.00 | 42.86 | 4.06 |
265 | 266 | 3.181517 | CCACGTGTATGCAACTCTTCATG | 60.182 | 47.826 | 15.65 | 0.00 | 0.00 | 3.07 |
266 | 267 | 3.002791 | CCACGTGTATGCAACTCTTCAT | 58.997 | 45.455 | 15.65 | 0.00 | 0.00 | 2.57 |
267 | 268 | 2.036604 | TCCACGTGTATGCAACTCTTCA | 59.963 | 45.455 | 15.65 | 0.00 | 0.00 | 3.02 |
268 | 269 | 2.668457 | CTCCACGTGTATGCAACTCTTC | 59.332 | 50.000 | 15.65 | 0.00 | 0.00 | 2.87 |
269 | 270 | 2.299013 | TCTCCACGTGTATGCAACTCTT | 59.701 | 45.455 | 15.65 | 0.00 | 0.00 | 2.85 |
270 | 271 | 1.893137 | TCTCCACGTGTATGCAACTCT | 59.107 | 47.619 | 15.65 | 0.00 | 0.00 | 3.24 |
271 | 272 | 2.363788 | TCTCCACGTGTATGCAACTC | 57.636 | 50.000 | 15.65 | 0.00 | 0.00 | 3.01 |
272 | 273 | 2.806244 | GTTTCTCCACGTGTATGCAACT | 59.194 | 45.455 | 15.65 | 0.00 | 0.00 | 3.16 |
273 | 274 | 2.806244 | AGTTTCTCCACGTGTATGCAAC | 59.194 | 45.455 | 15.65 | 10.29 | 0.00 | 4.17 |
274 | 275 | 3.064207 | GAGTTTCTCCACGTGTATGCAA | 58.936 | 45.455 | 15.65 | 0.00 | 0.00 | 4.08 |
275 | 276 | 2.683968 | GAGTTTCTCCACGTGTATGCA | 58.316 | 47.619 | 15.65 | 0.00 | 0.00 | 3.96 |
313 | 314 | 1.807142 | GTCTTTTCCTCTGGCTTTCCG | 59.193 | 52.381 | 0.00 | 0.00 | 34.14 | 4.30 |
314 | 315 | 2.863809 | TGTCTTTTCCTCTGGCTTTCC | 58.136 | 47.619 | 0.00 | 0.00 | 0.00 | 3.13 |
364 | 382 | 2.258591 | CAGGCTTTGCTGCTGCTG | 59.741 | 61.111 | 17.00 | 0.77 | 40.48 | 4.41 |
383 | 401 | 1.674221 | GGCGATCTATCTGGTGGCATC | 60.674 | 57.143 | 0.00 | 0.00 | 0.00 | 3.91 |
536 | 554 | 1.178534 | GCGGAGAGGGAGAGATGGAG | 61.179 | 65.000 | 0.00 | 0.00 | 0.00 | 3.86 |
601 | 619 | 1.229853 | GGGGAGGTTGAGGAAGGGA | 60.230 | 63.158 | 0.00 | 0.00 | 0.00 | 4.20 |
620 | 638 | 2.690510 | GAAGCAGGGGAGGGCTCT | 60.691 | 66.667 | 0.00 | 0.00 | 40.01 | 4.09 |
621 | 639 | 3.803162 | GGAAGCAGGGGAGGGCTC | 61.803 | 72.222 | 0.00 | 0.00 | 40.01 | 4.70 |
664 | 682 | 3.470888 | CTGGGAGCGGTACCTGGG | 61.471 | 72.222 | 18.55 | 3.54 | 0.00 | 4.45 |
665 | 683 | 4.162690 | GCTGGGAGCGGTACCTGG | 62.163 | 72.222 | 22.51 | 13.78 | 0.00 | 4.45 |
696 | 714 | 3.783642 | AGTAAGGGCTAGAGAGACAGAGA | 59.216 | 47.826 | 0.00 | 0.00 | 28.74 | 3.10 |
698 | 716 | 3.117813 | GGAGTAAGGGCTAGAGAGACAGA | 60.118 | 52.174 | 0.00 | 0.00 | 28.74 | 3.41 |
700 | 718 | 2.421670 | CGGAGTAAGGGCTAGAGAGACA | 60.422 | 54.545 | 0.00 | 0.00 | 28.74 | 3.41 |
701 | 719 | 2.223745 | CGGAGTAAGGGCTAGAGAGAC | 58.776 | 57.143 | 0.00 | 0.00 | 0.00 | 3.36 |
702 | 720 | 1.845143 | ACGGAGTAAGGGCTAGAGAGA | 59.155 | 52.381 | 0.00 | 0.00 | 41.94 | 3.10 |
706 | 724 | 1.481871 | CCAACGGAGTAAGGGCTAGA | 58.518 | 55.000 | 0.00 | 0.00 | 45.00 | 2.43 |
707 | 725 | 0.464452 | CCCAACGGAGTAAGGGCTAG | 59.536 | 60.000 | 0.00 | 0.00 | 46.41 | 3.42 |
709 | 727 | 3.400188 | CCCAACGGAGTAAGGGCT | 58.600 | 61.111 | 0.00 | 0.00 | 46.41 | 5.19 |
712 | 730 | 1.202842 | ACCAAACCCAACGGAGTAAGG | 60.203 | 52.381 | 0.00 | 0.00 | 45.00 | 2.69 |
713 | 731 | 2.265589 | ACCAAACCCAACGGAGTAAG | 57.734 | 50.000 | 0.00 | 0.00 | 45.00 | 2.34 |
714 | 732 | 2.732844 | AACCAAACCCAACGGAGTAA | 57.267 | 45.000 | 0.00 | 0.00 | 45.00 | 2.24 |
715 | 733 | 2.574450 | GAAACCAAACCCAACGGAGTA | 58.426 | 47.619 | 0.00 | 0.00 | 45.00 | 2.59 |
717 | 735 | 0.671796 | GGAAACCAAACCCAACGGAG | 59.328 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
748 | 766 | 6.510879 | TGATACGTATAGCAGAATTCGGAT | 57.489 | 37.500 | 8.34 | 5.62 | 0.00 | 4.18 |
765 | 798 | 7.954248 | GCACATAGAAATTAGAATGCTGATACG | 59.046 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
802 | 835 | 8.919777 | AAGGCTACAATTATAGGACCAATTAC | 57.080 | 34.615 | 0.00 | 0.00 | 0.00 | 1.89 |
859 | 980 | 9.119329 | CATAGCGTGATTTAGAGATAGTAACAC | 57.881 | 37.037 | 0.00 | 0.00 | 0.00 | 3.32 |
867 | 988 | 6.582636 | TCCAAACATAGCGTGATTTAGAGAT | 58.417 | 36.000 | 0.00 | 0.00 | 0.00 | 2.75 |
869 | 990 | 6.042777 | TCTCCAAACATAGCGTGATTTAGAG | 58.957 | 40.000 | 0.00 | 3.44 | 0.00 | 2.43 |
876 | 997 | 3.394674 | TGTTCTCCAAACATAGCGTGA | 57.605 | 42.857 | 0.00 | 0.00 | 0.00 | 4.35 |
879 | 1000 | 4.033358 | GTGAGATGTTCTCCAAACATAGCG | 59.967 | 45.833 | 3.55 | 0.00 | 42.73 | 4.26 |
881 | 1002 | 5.738909 | AGGTGAGATGTTCTCCAAACATAG | 58.261 | 41.667 | 3.55 | 0.00 | 42.73 | 2.23 |
885 | 1006 | 4.008074 | TGAGGTGAGATGTTCTCCAAAC | 57.992 | 45.455 | 2.26 | 0.00 | 42.73 | 2.93 |
895 | 1016 | 5.191426 | ACAATTCTTCCATGAGGTGAGATG | 58.809 | 41.667 | 0.00 | 0.00 | 35.89 | 2.90 |
897 | 1018 | 4.916041 | ACAATTCTTCCATGAGGTGAGA | 57.084 | 40.909 | 0.00 | 0.00 | 35.89 | 3.27 |
945 | 1066 | 1.746727 | CTCAAGGCGCGTCGAATCAG | 61.747 | 60.000 | 8.43 | 0.00 | 0.00 | 2.90 |
946 | 1067 | 1.805539 | CTCAAGGCGCGTCGAATCA | 60.806 | 57.895 | 8.43 | 0.00 | 0.00 | 2.57 |
1053 | 1180 | 0.979665 | TCTCAGCCTTCCTCTTGGTG | 59.020 | 55.000 | 0.00 | 0.00 | 34.23 | 4.17 |
1070 | 1197 | 2.040947 | CCCCTTTTCTTCTCAGCCTTCT | 59.959 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
1071 | 1198 | 2.224892 | ACCCCTTTTCTTCTCAGCCTTC | 60.225 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
1072 | 1199 | 1.783365 | ACCCCTTTTCTTCTCAGCCTT | 59.217 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
1073 | 1200 | 1.352687 | GACCCCTTTTCTTCTCAGCCT | 59.647 | 52.381 | 0.00 | 0.00 | 0.00 | 4.58 |
1074 | 1201 | 1.352687 | AGACCCCTTTTCTTCTCAGCC | 59.647 | 52.381 | 0.00 | 0.00 | 0.00 | 4.85 |
1075 | 1202 | 2.431454 | CAGACCCCTTTTCTTCTCAGC | 58.569 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
1076 | 1203 | 2.431454 | GCAGACCCCTTTTCTTCTCAG | 58.569 | 52.381 | 0.00 | 0.00 | 0.00 | 3.35 |
1077 | 1204 | 1.073923 | GGCAGACCCCTTTTCTTCTCA | 59.926 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
1078 | 1205 | 1.827681 | GGCAGACCCCTTTTCTTCTC | 58.172 | 55.000 | 0.00 | 0.00 | 0.00 | 2.87 |
1092 | 1219 | 3.770040 | CCCACATCGACGGGCAGA | 61.770 | 66.667 | 3.59 | 0.00 | 35.09 | 4.26 |
1098 | 1225 | 1.446099 | CTCACCACCCACATCGACG | 60.446 | 63.158 | 0.00 | 0.00 | 0.00 | 5.12 |
1161 | 1288 | 0.322546 | AAATCCCTTCCCAGTGCGTC | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
1275 | 1402 | 2.273538 | ATGATCTTCCATCAGCAGCC | 57.726 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1338 | 1465 | 2.540361 | GCATACAGCCTTGAATGCTTCG | 60.540 | 50.000 | 0.00 | 0.00 | 41.16 | 3.79 |
1490 | 1617 | 1.282570 | CGAAAGCACGGCACATGTT | 59.717 | 52.632 | 0.00 | 0.00 | 0.00 | 2.71 |
1510 | 1637 | 2.753966 | CGGCTTGATGCACGGAAGG | 61.754 | 63.158 | 0.00 | 0.00 | 45.15 | 3.46 |
1675 | 1802 | 5.221028 | CGTGGCATGCATTTTCCTATCTTTA | 60.221 | 40.000 | 21.36 | 0.00 | 0.00 | 1.85 |
1732 | 1859 | 3.076032 | ACCTCCCAAATAAGGACTTGCTT | 59.924 | 43.478 | 0.00 | 0.00 | 36.46 | 3.91 |
1733 | 1860 | 2.649816 | ACCTCCCAAATAAGGACTTGCT | 59.350 | 45.455 | 0.00 | 0.00 | 36.46 | 3.91 |
1734 | 1861 | 3.017442 | GACCTCCCAAATAAGGACTTGC | 58.983 | 50.000 | 0.00 | 0.00 | 36.46 | 4.01 |
1735 | 1862 | 3.621558 | GGACCTCCCAAATAAGGACTTG | 58.378 | 50.000 | 0.00 | 0.00 | 36.46 | 3.16 |
1763 | 1894 | 0.178990 | ACTGGGCCAAGACCTTGAAC | 60.179 | 55.000 | 16.25 | 3.34 | 42.93 | 3.18 |
1770 | 1901 | 0.984995 | AGTTAGGACTGGGCCAAGAC | 59.015 | 55.000 | 16.25 | 7.81 | 33.99 | 3.01 |
1822 | 1953 | 1.153005 | GGAAGCCTGATCCTGCCAG | 60.153 | 63.158 | 0.32 | 0.00 | 33.98 | 4.85 |
1935 | 2067 | 6.721208 | ACATATATCCCGCTTCATGGAAAAAT | 59.279 | 34.615 | 0.00 | 0.00 | 33.54 | 1.82 |
1983 | 2115 | 7.090319 | TCCAACCCTAGCATTTACATGATAT | 57.910 | 36.000 | 0.00 | 0.00 | 30.83 | 1.63 |
2153 | 2291 | 9.883142 | AGAAAAAGAAAACAATGTTTATGTGGA | 57.117 | 25.926 | 12.11 | 0.00 | 0.00 | 4.02 |
2176 | 2314 | 4.321452 | GCTGAAGCAATTCCATGTTCAGAA | 60.321 | 41.667 | 18.85 | 4.73 | 44.56 | 3.02 |
2231 | 2369 | 7.980062 | ACACACGCTTTTTCCAAAAATAAAAT | 58.020 | 26.923 | 0.00 | 0.00 | 37.27 | 1.82 |
2237 | 2375 | 4.511826 | ACAAACACACGCTTTTTCCAAAAA | 59.488 | 33.333 | 0.00 | 0.00 | 36.53 | 1.94 |
2238 | 2376 | 4.058817 | ACAAACACACGCTTTTTCCAAAA | 58.941 | 34.783 | 0.00 | 0.00 | 0.00 | 2.44 |
2239 | 2377 | 3.654414 | ACAAACACACGCTTTTTCCAAA | 58.346 | 36.364 | 0.00 | 0.00 | 0.00 | 3.28 |
2240 | 2378 | 3.305398 | ACAAACACACGCTTTTTCCAA | 57.695 | 38.095 | 0.00 | 0.00 | 0.00 | 3.53 |
2241 | 2379 | 3.305398 | AACAAACACACGCTTTTTCCA | 57.695 | 38.095 | 0.00 | 0.00 | 0.00 | 3.53 |
2242 | 2380 | 4.801516 | ACATAACAAACACACGCTTTTTCC | 59.198 | 37.500 | 0.00 | 0.00 | 0.00 | 3.13 |
2243 | 2381 | 5.942325 | ACATAACAAACACACGCTTTTTC | 57.058 | 34.783 | 0.00 | 0.00 | 0.00 | 2.29 |
2244 | 2382 | 7.030768 | AGTAACATAACAAACACACGCTTTTT | 58.969 | 30.769 | 0.00 | 0.00 | 0.00 | 1.94 |
2250 | 2388 | 5.267009 | TGCAAGTAACATAACAAACACACG | 58.733 | 37.500 | 0.00 | 0.00 | 0.00 | 4.49 |
2252 | 2390 | 9.404348 | CATAATGCAAGTAACATAACAAACACA | 57.596 | 29.630 | 0.00 | 0.00 | 0.00 | 3.72 |
2440 | 2578 | 3.126514 | GTCTTGAGTTCATGGATGCACAG | 59.873 | 47.826 | 0.00 | 0.00 | 0.00 | 3.66 |
2441 | 2579 | 3.076621 | GTCTTGAGTTCATGGATGCACA | 58.923 | 45.455 | 0.00 | 0.00 | 0.00 | 4.57 |
2553 | 2691 | 4.806640 | ATGCCAACCATTTCCTTAAGTG | 57.193 | 40.909 | 0.97 | 0.00 | 0.00 | 3.16 |
2701 | 2840 | 9.420118 | TCAAGTTGCCCATTTATATCAATAAGT | 57.580 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
2917 | 3056 | 0.678950 | AACAAACCTTGGGCATTCCG | 59.321 | 50.000 | 0.00 | 0.00 | 38.76 | 4.30 |
3026 | 3166 | 6.015010 | GCATTAGTGGTCTACATATCAGGAGT | 60.015 | 42.308 | 0.00 | 0.00 | 0.00 | 3.85 |
3040 | 3180 | 4.095483 | CAGAAAGGACATGCATTAGTGGTC | 59.905 | 45.833 | 0.00 | 0.36 | 0.00 | 4.02 |
3085 | 3225 | 5.674525 | AGAATAATGTTTCCTCGATCAGCA | 58.325 | 37.500 | 0.00 | 0.00 | 0.00 | 4.41 |
3092 | 3232 | 8.664798 | TGTACAAATGAGAATAATGTTTCCTCG | 58.335 | 33.333 | 0.00 | 0.00 | 0.00 | 4.63 |
3341 | 3481 | 6.004574 | AGCAGATATAATCGTCTAGACCACA | 58.995 | 40.000 | 17.23 | 1.87 | 0.00 | 4.17 |
3540 | 3680 | 6.971184 | CACAGAAAAGAAATAGATGATGGCAC | 59.029 | 38.462 | 0.00 | 0.00 | 0.00 | 5.01 |
3753 | 3943 | 1.454479 | CGGCCTCCCAAGATTGCAT | 60.454 | 57.895 | 0.00 | 0.00 | 0.00 | 3.96 |
4103 | 4300 | 2.807967 | ACGACCAACAGATGTGTCATTG | 59.192 | 45.455 | 0.00 | 0.00 | 35.08 | 2.82 |
4137 | 4334 | 7.972832 | ATACCTTAATGAACGAACAAGACAA | 57.027 | 32.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4206 | 4403 | 7.519366 | AGCTTTGCTATGGAAAGTGGAACTAC | 61.519 | 42.308 | 11.88 | 0.00 | 42.57 | 2.73 |
4299 | 4503 | 2.483014 | TGGGGAACACCTTCAATACG | 57.517 | 50.000 | 0.00 | 0.00 | 40.03 | 3.06 |
4325 | 4529 | 9.061610 | CACAAACGAAATATTAACATGTCCTTC | 57.938 | 33.333 | 0.00 | 0.00 | 0.00 | 3.46 |
4411 | 4615 | 4.929808 | ACTAACTGCAAAGTTACCGATCTG | 59.070 | 41.667 | 0.00 | 0.00 | 33.59 | 2.90 |
4437 | 4641 | 8.042515 | AGACAAAATTGCCATGCATATTAACTT | 58.957 | 29.630 | 0.00 | 0.00 | 38.76 | 2.66 |
4520 | 4724 | 5.519927 | GCATAGGTTCTTTTTGCGCAATATT | 59.480 | 36.000 | 25.64 | 6.64 | 0.00 | 1.28 |
4575 | 4779 | 6.824196 | GGAAAGGGAGAAGAATAAAACTCGAT | 59.176 | 38.462 | 0.00 | 0.00 | 0.00 | 3.59 |
4782 | 4986 | 9.570468 | TTTGTAATATTACTGTGGTTGGTAACA | 57.430 | 29.630 | 22.82 | 1.20 | 38.67 | 2.41 |
4802 | 5006 | 7.744087 | AATCACAACATAGACAGCTTTGTAA | 57.256 | 32.000 | 0.00 | 0.00 | 35.63 | 2.41 |
4875 | 5079 | 3.261897 | CACCAGAGTAGAACCACCTCATT | 59.738 | 47.826 | 0.00 | 0.00 | 0.00 | 2.57 |
4893 | 5097 | 2.037053 | CAAACGCCCAATGTCACCA | 58.963 | 52.632 | 0.00 | 0.00 | 0.00 | 4.17 |
4938 | 5142 | 7.565398 | AGCTTAACTATATCCTTCTTCCTGTCA | 59.435 | 37.037 | 0.00 | 0.00 | 0.00 | 3.58 |
4942 | 5146 | 8.554490 | TGAAGCTTAACTATATCCTTCTTCCT | 57.446 | 34.615 | 0.00 | 0.00 | 32.21 | 3.36 |
5103 | 5307 | 1.958288 | AAGTAGCCTCCACCTGTGAT | 58.042 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
5163 | 5367 | 2.576648 | ACAGTAGTTTTGGGAGGGATCC | 59.423 | 50.000 | 1.92 | 1.92 | 0.00 | 3.36 |
5166 | 5370 | 2.414612 | ACACAGTAGTTTTGGGAGGGA | 58.585 | 47.619 | 0.00 | 0.00 | 0.00 | 4.20 |
5220 | 5424 | 1.341209 | CCTTGTTTTGAGGCCCAGTTC | 59.659 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
5250 | 5454 | 2.680805 | GCACAGATCGGGGAAATCAGAA | 60.681 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
5324 | 5528 | 2.171003 | TCGATCAGAGTGCAGGAGAAA | 58.829 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
5351 | 5555 | 0.584876 | GCAACGGTTAGCAAACGACT | 59.415 | 50.000 | 12.23 | 0.00 | 36.39 | 4.18 |
5388 | 5592 | 2.414559 | CCAATTTAGAGCAACGGCACAG | 60.415 | 50.000 | 0.00 | 0.00 | 44.61 | 3.66 |
5394 | 5598 | 4.142816 | CCTGAAGACCAATTTAGAGCAACG | 60.143 | 45.833 | 0.00 | 0.00 | 0.00 | 4.10 |
5409 | 5613 | 2.185004 | TTGCTTACCAGCCTGAAGAC | 57.815 | 50.000 | 0.00 | 0.00 | 46.74 | 3.01 |
5605 | 5810 | 5.008911 | TGAAACACAACACAGATGAGGAATG | 59.991 | 40.000 | 0.00 | 0.00 | 0.00 | 2.67 |
5728 | 5954 | 8.689061 | ACGGTAAATCATCAAGTACACATACTA | 58.311 | 33.333 | 0.00 | 0.00 | 41.00 | 1.82 |
5729 | 5955 | 7.553334 | ACGGTAAATCATCAAGTACACATACT | 58.447 | 34.615 | 0.00 | 0.00 | 43.91 | 2.12 |
5730 | 5956 | 7.766219 | ACGGTAAATCATCAAGTACACATAC | 57.234 | 36.000 | 0.00 | 0.00 | 0.00 | 2.39 |
5731 | 5957 | 7.820386 | ACAACGGTAAATCATCAAGTACACATA | 59.180 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
5732 | 5958 | 6.653320 | ACAACGGTAAATCATCAAGTACACAT | 59.347 | 34.615 | 0.00 | 0.00 | 0.00 | 3.21 |
5753 | 5980 | 8.430801 | AACATGATCTCTAGCTGAAATACAAC | 57.569 | 34.615 | 0.00 | 0.00 | 0.00 | 3.32 |
5757 | 5984 | 7.508636 | AGGAGAACATGATCTCTAGCTGAAATA | 59.491 | 37.037 | 26.42 | 0.00 | 44.30 | 1.40 |
5769 | 5996 | 7.251321 | AGTTTAACTGAGGAGAACATGATCT | 57.749 | 36.000 | 4.99 | 4.99 | 0.00 | 2.75 |
5774 | 6001 | 7.067496 | TGAGAAGTTTAACTGAGGAGAACAT | 57.933 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
5834 | 6063 | 4.820897 | TCCTTGTGTAGCAGTAACTCATG | 58.179 | 43.478 | 0.00 | 0.00 | 0.00 | 3.07 |
5885 | 6114 | 7.858052 | AAGCTGATGTTTCAAAGAATTTACG | 57.142 | 32.000 | 0.00 | 0.00 | 35.03 | 3.18 |
5921 | 6150 | 6.208599 | ACATTTTATAACAGTGAACAGTGGGG | 59.791 | 38.462 | 13.14 | 0.00 | 36.10 | 4.96 |
6027 | 6358 | 4.184629 | ACACTCTGAGATTAATTGTCGGC | 58.815 | 43.478 | 12.44 | 0.00 | 0.00 | 5.54 |
6028 | 6359 | 6.811665 | TGTTACACTCTGAGATTAATTGTCGG | 59.188 | 38.462 | 12.44 | 0.00 | 0.00 | 4.79 |
6048 | 6379 | 8.548721 | CCTCCGTTCACAATTATAAGATGTTAC | 58.451 | 37.037 | 4.41 | 5.55 | 0.00 | 2.50 |
6049 | 6380 | 7.713507 | CCCTCCGTTCACAATTATAAGATGTTA | 59.286 | 37.037 | 4.41 | 0.00 | 0.00 | 2.41 |
6051 | 6382 | 6.055588 | CCCTCCGTTCACAATTATAAGATGT | 58.944 | 40.000 | 1.82 | 1.82 | 0.00 | 3.06 |
6073 | 6404 | 4.337555 | TCACTGTTCTAATACGCTACTCCC | 59.662 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
6147 | 6478 | 7.745717 | TCATATAGGCTACAAACTTGGCTTAT | 58.254 | 34.615 | 0.00 | 0.00 | 37.73 | 1.73 |
6148 | 6479 | 7.131907 | TCATATAGGCTACAAACTTGGCTTA | 57.868 | 36.000 | 0.00 | 0.00 | 37.73 | 3.09 |
6150 | 6481 | 5.630415 | TCATATAGGCTACAAACTTGGCT | 57.370 | 39.130 | 0.00 | 0.00 | 39.84 | 4.75 |
6151 | 6482 | 6.884280 | ATTCATATAGGCTACAAACTTGGC | 57.116 | 37.500 | 0.00 | 0.00 | 0.00 | 4.52 |
6156 | 6544 | 7.707104 | ACTTGCAATTCATATAGGCTACAAAC | 58.293 | 34.615 | 0.00 | 0.00 | 0.00 | 2.93 |
6159 | 6547 | 7.339212 | ACAAACTTGCAATTCATATAGGCTACA | 59.661 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
6256 | 6647 | 8.742777 | CCACTCTAATTCCTTGATTCAAATTCA | 58.257 | 33.333 | 0.01 | 0.00 | 0.00 | 2.57 |
6373 | 6765 | 0.323178 | CTGGATTGCTGCTCCTGGTT | 60.323 | 55.000 | 9.08 | 0.00 | 33.69 | 3.67 |
6374 | 6766 | 1.302285 | CTGGATTGCTGCTCCTGGT | 59.698 | 57.895 | 9.08 | 0.00 | 33.69 | 4.00 |
6448 | 6840 | 2.473984 | GACACTTCCAGTACCGTTTTCG | 59.526 | 50.000 | 0.00 | 0.00 | 43.67 | 3.46 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.