Multiple sequence alignment - TraesCS4A01G207000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G207000 chr4A 100.000 6582 0 0 1 6582 500358005 500351424 0.000000e+00 12155.0
1 TraesCS4A01G207000 chr4A 93.249 237 16 0 1 237 702332378 702332142 3.780000e-92 350.0
2 TraesCS4A01G207000 chr4A 94.872 39 1 1 6051 6089 494006896 494006933 7.130000e-05 60.2
3 TraesCS4A01G207000 chr4D 94.650 5140 205 27 871 5972 87721726 87716619 0.000000e+00 7904.0
4 TraesCS4A01G207000 chr4D 88.993 536 26 15 6061 6582 87716455 87715939 3.350000e-177 632.0
5 TraesCS4A01G207000 chr4D 90.206 388 22 6 366 753 87722284 87721913 5.930000e-135 492.0
6 TraesCS4A01G207000 chr4D 95.708 233 10 0 1 233 504533285 504533053 6.230000e-100 375.0
7 TraesCS4A01G207000 chr4B 89.672 3931 297 59 2262 6151 124024011 124020149 0.000000e+00 4909.0
8 TraesCS4A01G207000 chr4B 91.106 877 61 4 833 1703 124037872 124037007 0.000000e+00 1171.0
9 TraesCS4A01G207000 chr4B 98.144 431 7 1 6153 6582 124020089 124019659 0.000000e+00 750.0
10 TraesCS4A01G207000 chr4B 85.935 583 33 18 285 835 124038462 124037897 1.590000e-160 577.0
11 TraesCS4A01G207000 chr4B 83.628 226 24 6 2016 2235 124024220 124024002 4.030000e-47 200.0
12 TraesCS4A01G207000 chr5B 79.372 732 123 22 3128 3855 208523475 208524182 2.130000e-134 490.0
13 TraesCS4A01G207000 chr5B 100.000 31 0 0 6051 6081 218214598 218214628 2.560000e-04 58.4
14 TraesCS4A01G207000 chr5A 79.320 735 121 23 3127 3855 239530089 239530798 2.760000e-133 486.0
15 TraesCS4A01G207000 chr5A 95.690 232 10 0 1 232 216565085 216564854 2.240000e-99 374.0
16 TraesCS4A01G207000 chr5A 100.000 31 0 0 6051 6081 231302099 231302129 2.560000e-04 58.4
17 TraesCS4A01G207000 chr5D 96.567 233 8 0 1 233 491285222 491285454 2.880000e-103 387.0
18 TraesCS4A01G207000 chr6D 96.137 233 9 0 1 233 387398287 387398519 1.340000e-101 381.0
19 TraesCS4A01G207000 chr1B 93.991 233 14 0 1 233 632977695 632977463 2.920000e-93 353.0
20 TraesCS4A01G207000 chr6B 93.562 233 15 0 1 233 710074014 710074246 1.360000e-91 348.0
21 TraesCS4A01G207000 chr6B 92.672 232 17 0 1 232 619098352 619098583 1.060000e-87 335.0
22 TraesCS4A01G207000 chr2B 93.833 227 14 0 1 227 596922449 596922675 6.320000e-90 342.0
23 TraesCS4A01G207000 chrUn 100.000 31 0 0 6051 6081 278887197 278887167 2.560000e-04 58.4
24 TraesCS4A01G207000 chrUn 100.000 31 0 0 6051 6081 395191379 395191349 2.560000e-04 58.4
25 TraesCS4A01G207000 chr1A 100.000 31 0 0 6051 6081 9174025 9174055 2.560000e-04 58.4
26 TraesCS4A01G207000 chr1A 100.000 31 0 0 6051 6081 9201419 9201449 2.560000e-04 58.4
27 TraesCS4A01G207000 chr6A 90.698 43 2 2 6000 6040 143976549 143976591 1.000000e-03 56.5
28 TraesCS4A01G207000 chr3D 100.000 30 0 0 6051 6080 67480996 67480967 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G207000 chr4A 500351424 500358005 6581 True 12155.000000 12155 100.000000 1 6582 1 chr4A.!!$R1 6581
1 TraesCS4A01G207000 chr4D 87715939 87722284 6345 True 3009.333333 7904 91.283000 366 6582 3 chr4D.!!$R2 6216
2 TraesCS4A01G207000 chr4B 124019659 124024220 4561 True 1953.000000 4909 90.481333 2016 6582 3 chr4B.!!$R1 4566
3 TraesCS4A01G207000 chr4B 124037007 124038462 1455 True 874.000000 1171 88.520500 285 1703 2 chr4B.!!$R2 1418
4 TraesCS4A01G207000 chr5B 208523475 208524182 707 False 490.000000 490 79.372000 3128 3855 1 chr5B.!!$F1 727
5 TraesCS4A01G207000 chr5A 239530089 239530798 709 False 486.000000 486 79.320000 3127 3855 1 chr5A.!!$F2 728


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
145 146 0.036306 GAACCGTGACCTGGATTGGT 59.964 55.0 0.00 0.0 44.10 3.67 F
147 148 0.036306 ACCGTGACCTGGATTGGTTC 59.964 55.0 0.00 0.0 41.00 3.62 F
167 168 0.105039 GGCTCCTCCGGATGTGTTAG 59.895 60.0 3.57 0.0 0.00 2.34 F
1078 1205 0.107752 GAGGAAGGCTGAGAAGGCTG 60.108 60.0 2.25 0.0 44.26 4.85 F
1901 2033 1.091537 ACACATTTATGAACGCGGGG 58.908 50.0 12.47 0.0 0.00 5.73 F
3101 3241 0.250234 CCCTGCTGATCGAGGAAACA 59.750 55.0 6.78 0.0 0.00 2.83 F
4710 4914 0.918983 AATGCCTCGGGGAGAAATCA 59.081 50.0 4.80 0.0 33.58 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1763 1894 0.178990 ACTGGGCCAAGACCTTGAAC 60.179 55.000 16.25 3.34 42.93 3.18 R
1770 1901 0.984995 AGTTAGGACTGGGCCAAGAC 59.015 55.000 16.25 7.81 33.99 3.01 R
1822 1953 1.153005 GGAAGCCTGATCCTGCCAG 60.153 63.158 0.32 0.00 33.98 4.85 R
2917 3056 0.678950 AACAAACCTTGGGCATTCCG 59.321 50.000 0.00 0.00 38.76 4.30 R
3753 3943 1.454479 CGGCCTCCCAAGATTGCAT 60.454 57.895 0.00 0.00 0.00 3.96 R
4893 5097 2.037053 CAAACGCCCAATGTCACCA 58.963 52.632 0.00 0.00 0.00 4.17 R
6373 6765 0.323178 CTGGATTGCTGCTCCTGGTT 60.323 55.000 9.08 0.00 33.69 3.67 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.872113 CTTATGCTTTTCTGGTAAAGGAGAT 57.128 36.000 0.00 0.00 38.57 2.75
25 26 8.286191 CTTATGCTTTTCTGGTAAAGGAGATT 57.714 34.615 0.00 0.00 38.57 2.40
26 27 9.396022 CTTATGCTTTTCTGGTAAAGGAGATTA 57.604 33.333 0.00 0.00 38.57 1.75
27 28 7.872113 ATGCTTTTCTGGTAAAGGAGATTAG 57.128 36.000 0.00 0.00 38.57 1.73
28 29 7.016153 TGCTTTTCTGGTAAAGGAGATTAGA 57.984 36.000 0.00 0.00 36.00 2.10
29 30 7.633789 TGCTTTTCTGGTAAAGGAGATTAGAT 58.366 34.615 0.00 0.00 36.00 1.98
30 31 8.768397 TGCTTTTCTGGTAAAGGAGATTAGATA 58.232 33.333 0.00 0.00 36.00 1.98
31 32 9.785982 GCTTTTCTGGTAAAGGAGATTAGATAT 57.214 33.333 0.00 0.00 36.00 1.63
71 72 9.922305 GTTAATCTTGTATTACTCATGTCTTGC 57.078 33.333 0.00 0.00 0.00 4.01
72 73 6.834959 ATCTTGTATTACTCATGTCTTGCG 57.165 37.500 0.00 0.00 0.00 4.85
73 74 5.109210 TCTTGTATTACTCATGTCTTGCGG 58.891 41.667 0.00 0.00 0.00 5.69
74 75 4.465632 TGTATTACTCATGTCTTGCGGT 57.534 40.909 0.00 0.00 0.00 5.68
75 76 4.430007 TGTATTACTCATGTCTTGCGGTC 58.570 43.478 0.00 0.00 0.00 4.79
76 77 1.990799 TTACTCATGTCTTGCGGTCG 58.009 50.000 0.00 0.00 0.00 4.79
77 78 0.457853 TACTCATGTCTTGCGGTCGC 60.458 55.000 8.54 8.54 42.35 5.19
87 88 4.377471 GCGGTCGCAAAATAAGGC 57.623 55.556 10.67 0.00 41.49 4.35
88 89 1.226575 GCGGTCGCAAAATAAGGCC 60.227 57.895 10.67 0.00 41.49 5.19
89 90 1.928706 GCGGTCGCAAAATAAGGCCA 61.929 55.000 5.01 0.00 41.49 5.36
90 91 0.098728 CGGTCGCAAAATAAGGCCAG 59.901 55.000 5.01 0.00 0.00 4.85
91 92 0.179137 GGTCGCAAAATAAGGCCAGC 60.179 55.000 5.01 0.00 0.00 4.85
92 93 0.523335 GTCGCAAAATAAGGCCAGCG 60.523 55.000 5.01 8.98 45.79 5.18
96 97 3.273919 GCAAAATAAGGCCAGCGATAG 57.726 47.619 5.01 0.00 0.00 2.08
97 98 2.618709 GCAAAATAAGGCCAGCGATAGT 59.381 45.455 5.01 0.00 39.35 2.12
98 99 3.304057 GCAAAATAAGGCCAGCGATAGTC 60.304 47.826 5.01 0.00 39.35 2.59
99 100 4.130118 CAAAATAAGGCCAGCGATAGTCT 58.870 43.478 5.01 0.00 39.35 3.24
100 101 5.297547 CAAAATAAGGCCAGCGATAGTCTA 58.702 41.667 5.01 0.00 39.35 2.59
101 102 4.792521 AATAAGGCCAGCGATAGTCTAG 57.207 45.455 5.01 0.00 39.35 2.43
102 103 0.676736 AAGGCCAGCGATAGTCTAGC 59.323 55.000 5.01 0.00 39.35 3.42
103 104 0.178975 AGGCCAGCGATAGTCTAGCT 60.179 55.000 5.01 0.00 42.64 3.32
107 108 2.709170 AGCGATAGTCTAGCTGCGT 58.291 52.632 0.00 0.00 40.07 5.24
108 109 1.025812 AGCGATAGTCTAGCTGCGTT 58.974 50.000 0.00 0.00 40.07 4.84
109 110 1.002251 AGCGATAGTCTAGCTGCGTTC 60.002 52.381 0.00 0.00 40.07 3.95
110 111 1.664629 CGATAGTCTAGCTGCGTTCG 58.335 55.000 0.00 0.00 0.00 3.95
111 112 1.660614 CGATAGTCTAGCTGCGTTCGG 60.661 57.143 0.00 0.00 0.00 4.30
112 113 1.334243 GATAGTCTAGCTGCGTTCGGT 59.666 52.381 0.00 0.00 0.00 4.69
113 114 2.028420 TAGTCTAGCTGCGTTCGGTA 57.972 50.000 0.00 0.00 0.00 4.02
114 115 0.733729 AGTCTAGCTGCGTTCGGTAG 59.266 55.000 0.00 0.00 34.63 3.18
115 116 0.731417 GTCTAGCTGCGTTCGGTAGA 59.269 55.000 0.00 5.85 38.67 2.59
116 117 1.015109 TCTAGCTGCGTTCGGTAGAG 58.985 55.000 0.00 0.00 36.78 2.43
117 118 0.592754 CTAGCTGCGTTCGGTAGAGC 60.593 60.000 0.00 0.00 35.13 4.09
118 119 1.030488 TAGCTGCGTTCGGTAGAGCT 61.030 55.000 0.00 0.00 42.57 4.09
119 120 1.874466 GCTGCGTTCGGTAGAGCTC 60.874 63.158 5.27 5.27 0.00 4.09
120 121 1.506718 CTGCGTTCGGTAGAGCTCA 59.493 57.895 17.77 0.00 0.00 4.26
121 122 0.109272 CTGCGTTCGGTAGAGCTCAA 60.109 55.000 17.77 0.00 0.00 3.02
122 123 0.109272 TGCGTTCGGTAGAGCTCAAG 60.109 55.000 17.77 3.96 0.00 3.02
123 124 0.802607 GCGTTCGGTAGAGCTCAAGG 60.803 60.000 17.77 7.72 0.00 3.61
124 125 0.526662 CGTTCGGTAGAGCTCAAGGT 59.473 55.000 17.77 0.00 0.00 3.50
125 126 1.741706 CGTTCGGTAGAGCTCAAGGTA 59.258 52.381 17.77 0.00 0.00 3.08
126 127 2.223294 CGTTCGGTAGAGCTCAAGGTAG 60.223 54.545 17.77 2.08 0.00 3.18
127 128 3.015327 GTTCGGTAGAGCTCAAGGTAGA 58.985 50.000 17.77 4.57 0.00 2.59
128 129 3.361281 TCGGTAGAGCTCAAGGTAGAA 57.639 47.619 17.77 0.00 0.00 2.10
129 130 3.015327 TCGGTAGAGCTCAAGGTAGAAC 58.985 50.000 17.77 0.73 0.00 3.01
130 131 2.099427 CGGTAGAGCTCAAGGTAGAACC 59.901 54.545 17.77 8.61 38.99 3.62
131 132 2.099427 GGTAGAGCTCAAGGTAGAACCG 59.901 54.545 17.77 0.00 44.90 4.44
132 133 1.926108 AGAGCTCAAGGTAGAACCGT 58.074 50.000 17.77 0.00 44.90 4.83
133 134 1.546476 AGAGCTCAAGGTAGAACCGTG 59.454 52.381 17.77 5.76 46.97 4.94
139 140 0.974383 AAGGTAGAACCGTGACCTGG 59.026 55.000 0.00 0.00 44.90 4.45
140 141 0.113776 AGGTAGAACCGTGACCTGGA 59.886 55.000 0.00 0.00 44.90 3.86
141 142 1.192428 GGTAGAACCGTGACCTGGAT 58.808 55.000 0.00 0.00 0.00 3.41
142 143 1.553704 GGTAGAACCGTGACCTGGATT 59.446 52.381 0.00 0.00 0.00 3.01
143 144 2.618053 GTAGAACCGTGACCTGGATTG 58.382 52.381 0.00 0.00 0.00 2.67
144 145 0.324943 AGAACCGTGACCTGGATTGG 59.675 55.000 0.00 0.00 0.00 3.16
145 146 0.036306 GAACCGTGACCTGGATTGGT 59.964 55.000 0.00 0.00 44.10 3.67
146 147 0.476771 AACCGTGACCTGGATTGGTT 59.523 50.000 0.00 6.16 41.00 3.67
147 148 0.036306 ACCGTGACCTGGATTGGTTC 59.964 55.000 0.00 0.00 41.00 3.62
148 149 1.019278 CCGTGACCTGGATTGGTTCG 61.019 60.000 0.00 0.00 41.00 3.95
149 150 1.019278 CGTGACCTGGATTGGTTCGG 61.019 60.000 0.00 0.00 41.00 4.30
150 151 1.002624 TGACCTGGATTGGTTCGGC 60.003 57.895 0.00 0.00 41.00 5.54
151 152 1.299976 GACCTGGATTGGTTCGGCT 59.700 57.895 0.00 0.00 41.00 5.52
152 153 0.744771 GACCTGGATTGGTTCGGCTC 60.745 60.000 0.00 0.00 41.00 4.70
153 154 1.452108 CCTGGATTGGTTCGGCTCC 60.452 63.158 0.00 0.00 0.00 4.70
154 155 1.604378 CTGGATTGGTTCGGCTCCT 59.396 57.895 0.00 0.00 0.00 3.69
155 156 0.462759 CTGGATTGGTTCGGCTCCTC 60.463 60.000 0.00 0.00 0.00 3.71
156 157 1.153147 GGATTGGTTCGGCTCCTCC 60.153 63.158 0.00 0.00 0.00 4.30
165 166 2.990479 GGCTCCTCCGGATGTGTT 59.010 61.111 3.57 0.00 0.00 3.32
166 167 2.208527 GGCTCCTCCGGATGTGTTA 58.791 57.895 3.57 0.00 0.00 2.41
167 168 0.105039 GGCTCCTCCGGATGTGTTAG 59.895 60.000 3.57 0.00 0.00 2.34
168 169 1.112113 GCTCCTCCGGATGTGTTAGA 58.888 55.000 3.57 0.00 0.00 2.10
169 170 1.480954 GCTCCTCCGGATGTGTTAGAA 59.519 52.381 3.57 0.00 0.00 2.10
170 171 2.738964 GCTCCTCCGGATGTGTTAGAAC 60.739 54.545 3.57 0.00 0.00 3.01
171 172 2.761208 CTCCTCCGGATGTGTTAGAACT 59.239 50.000 3.57 0.00 0.00 3.01
172 173 2.496070 TCCTCCGGATGTGTTAGAACTG 59.504 50.000 3.57 0.00 0.00 3.16
173 174 2.496070 CCTCCGGATGTGTTAGAACTGA 59.504 50.000 3.57 0.00 0.00 3.41
174 175 3.133003 CCTCCGGATGTGTTAGAACTGAT 59.867 47.826 3.57 0.00 0.00 2.90
175 176 4.383118 CCTCCGGATGTGTTAGAACTGATT 60.383 45.833 3.57 0.00 0.00 2.57
176 177 4.503910 TCCGGATGTGTTAGAACTGATTG 58.496 43.478 0.00 0.00 0.00 2.67
177 178 3.063997 CCGGATGTGTTAGAACTGATTGC 59.936 47.826 0.00 0.00 0.00 3.56
178 179 3.242091 CGGATGTGTTAGAACTGATTGCG 60.242 47.826 0.00 0.00 0.00 4.85
179 180 3.932710 GGATGTGTTAGAACTGATTGCGA 59.067 43.478 0.00 0.00 0.00 5.10
180 181 4.572389 GGATGTGTTAGAACTGATTGCGAT 59.428 41.667 0.00 0.00 0.00 4.58
181 182 4.926860 TGTGTTAGAACTGATTGCGATG 57.073 40.909 0.00 0.00 0.00 3.84
182 183 3.684305 TGTGTTAGAACTGATTGCGATGG 59.316 43.478 0.00 0.00 0.00 3.51
183 184 3.932710 GTGTTAGAACTGATTGCGATGGA 59.067 43.478 0.00 0.00 0.00 3.41
184 185 4.572389 GTGTTAGAACTGATTGCGATGGAT 59.428 41.667 0.00 0.00 0.00 3.41
185 186 5.065218 GTGTTAGAACTGATTGCGATGGATT 59.935 40.000 0.00 0.00 0.00 3.01
186 187 5.065090 TGTTAGAACTGATTGCGATGGATTG 59.935 40.000 0.00 0.00 0.00 2.67
187 188 3.614092 AGAACTGATTGCGATGGATTGT 58.386 40.909 0.00 0.00 0.00 2.71
188 189 4.769688 AGAACTGATTGCGATGGATTGTA 58.230 39.130 0.00 0.00 0.00 2.41
189 190 4.572389 AGAACTGATTGCGATGGATTGTAC 59.428 41.667 0.00 0.00 0.00 2.90
190 191 4.142609 ACTGATTGCGATGGATTGTACT 57.857 40.909 0.00 0.00 0.00 2.73
191 192 3.873361 ACTGATTGCGATGGATTGTACTG 59.127 43.478 0.00 0.00 0.00 2.74
192 193 4.122046 CTGATTGCGATGGATTGTACTGA 58.878 43.478 0.00 0.00 0.00 3.41
193 194 4.707105 TGATTGCGATGGATTGTACTGAT 58.293 39.130 0.00 0.00 0.00 2.90
194 195 5.852827 TGATTGCGATGGATTGTACTGATA 58.147 37.500 0.00 0.00 0.00 2.15
195 196 6.466812 TGATTGCGATGGATTGTACTGATAT 58.533 36.000 0.00 0.00 0.00 1.63
196 197 6.936335 TGATTGCGATGGATTGTACTGATATT 59.064 34.615 0.00 0.00 0.00 1.28
197 198 8.093927 TGATTGCGATGGATTGTACTGATATTA 58.906 33.333 0.00 0.00 0.00 0.98
198 199 9.102757 GATTGCGATGGATTGTACTGATATTAT 57.897 33.333 0.00 0.00 0.00 1.28
199 200 8.479313 TTGCGATGGATTGTACTGATATTATC 57.521 34.615 0.00 0.00 0.00 1.75
200 201 7.840931 TGCGATGGATTGTACTGATATTATCT 58.159 34.615 5.33 0.00 0.00 1.98
201 202 7.761249 TGCGATGGATTGTACTGATATTATCTG 59.239 37.037 8.54 8.54 0.00 2.90
202 203 7.976175 GCGATGGATTGTACTGATATTATCTGA 59.024 37.037 15.16 0.13 33.12 3.27
203 204 9.513727 CGATGGATTGTACTGATATTATCTGAG 57.486 37.037 15.16 4.10 33.12 3.35
222 223 7.739498 TCTGAGTAATACAAGTTTTGAACCC 57.261 36.000 0.00 0.00 0.00 4.11
223 224 6.425721 TCTGAGTAATACAAGTTTTGAACCCG 59.574 38.462 0.00 0.00 0.00 5.28
224 225 5.049267 TGAGTAATACAAGTTTTGAACCCGC 60.049 40.000 0.00 0.00 0.00 6.13
225 226 4.822896 AGTAATACAAGTTTTGAACCCGCA 59.177 37.500 0.00 0.00 0.00 5.69
226 227 4.657436 AATACAAGTTTTGAACCCGCAA 57.343 36.364 0.00 0.00 0.00 4.85
227 228 4.657436 ATACAAGTTTTGAACCCGCAAA 57.343 36.364 0.00 0.00 36.08 3.68
228 229 3.320673 ACAAGTTTTGAACCCGCAAAA 57.679 38.095 0.00 0.00 43.31 2.44
229 230 3.665190 ACAAGTTTTGAACCCGCAAAAA 58.335 36.364 0.00 0.00 45.93 1.94
253 254 8.934023 AAAAACATCAGAATTAAGGGAGTACA 57.066 30.769 0.00 0.00 0.00 2.90
254 255 9.533831 AAAAACATCAGAATTAAGGGAGTACAT 57.466 29.630 0.00 0.00 0.00 2.29
255 256 9.533831 AAAACATCAGAATTAAGGGAGTACATT 57.466 29.630 0.00 0.00 0.00 2.71
256 257 8.511604 AACATCAGAATTAAGGGAGTACATTG 57.488 34.615 0.00 0.00 0.00 2.82
257 258 7.861629 ACATCAGAATTAAGGGAGTACATTGA 58.138 34.615 0.00 0.00 0.00 2.57
258 259 8.328758 ACATCAGAATTAAGGGAGTACATTGAA 58.671 33.333 0.00 0.00 0.00 2.69
259 260 9.177608 CATCAGAATTAAGGGAGTACATTGAAA 57.822 33.333 0.00 0.00 0.00 2.69
260 261 9.927081 ATCAGAATTAAGGGAGTACATTGAAAT 57.073 29.630 0.00 0.00 0.00 2.17
261 262 9.753674 TCAGAATTAAGGGAGTACATTGAAATT 57.246 29.630 0.00 0.00 0.00 1.82
264 265 9.503427 GAATTAAGGGAGTACATTGAAATTTCG 57.497 33.333 13.34 2.16 0.00 3.46
265 266 4.965119 AGGGAGTACATTGAAATTTCGC 57.035 40.909 13.34 0.00 0.00 4.70
266 267 4.331968 AGGGAGTACATTGAAATTTCGCA 58.668 39.130 13.34 3.18 0.00 5.10
267 268 4.949856 AGGGAGTACATTGAAATTTCGCAT 59.050 37.500 13.34 5.41 0.00 4.73
268 269 5.036737 GGGAGTACATTGAAATTTCGCATG 58.963 41.667 20.75 20.75 0.00 4.06
269 270 5.163663 GGGAGTACATTGAAATTTCGCATGA 60.164 40.000 25.83 13.44 0.00 3.07
270 271 6.321717 GGAGTACATTGAAATTTCGCATGAA 58.678 36.000 25.83 11.96 0.00 2.57
271 272 6.470235 GGAGTACATTGAAATTTCGCATGAAG 59.530 38.462 25.83 11.06 35.06 3.02
272 273 7.144722 AGTACATTGAAATTTCGCATGAAGA 57.855 32.000 25.83 13.91 35.06 2.87
273 274 7.246311 AGTACATTGAAATTTCGCATGAAGAG 58.754 34.615 25.83 10.81 35.06 2.85
274 275 6.017400 ACATTGAAATTTCGCATGAAGAGT 57.983 33.333 25.83 11.27 35.06 3.24
275 276 6.449698 ACATTGAAATTTCGCATGAAGAGTT 58.550 32.000 25.83 8.90 35.06 3.01
276 277 6.364165 ACATTGAAATTTCGCATGAAGAGTTG 59.636 34.615 25.83 9.60 35.06 3.16
277 278 4.229096 TGAAATTTCGCATGAAGAGTTGC 58.771 39.130 13.34 0.00 35.06 4.17
278 279 3.921119 AATTTCGCATGAAGAGTTGCA 57.079 38.095 0.00 0.00 38.80 4.08
279 280 4.445452 AATTTCGCATGAAGAGTTGCAT 57.555 36.364 0.00 0.00 38.80 3.96
280 281 5.565592 AATTTCGCATGAAGAGTTGCATA 57.434 34.783 0.00 0.00 38.80 3.14
281 282 4.340894 TTTCGCATGAAGAGTTGCATAC 57.659 40.909 0.00 0.00 38.80 2.39
282 283 2.971307 TCGCATGAAGAGTTGCATACA 58.029 42.857 0.00 0.00 38.80 2.29
283 284 2.672874 TCGCATGAAGAGTTGCATACAC 59.327 45.455 0.00 0.00 38.80 2.90
313 314 1.673920 CTCCAGTACGAGGAGCTTCTC 59.326 57.143 19.93 12.49 45.51 2.87
354 355 2.033194 GGACGGAGAAACCAAGGCG 61.033 63.158 0.00 0.00 38.90 5.52
617 635 1.201429 TGCTCCCTTCCTCAACCTCC 61.201 60.000 0.00 0.00 0.00 4.30
620 638 1.541368 CCCTTCCTCAACCTCCCCA 60.541 63.158 0.00 0.00 0.00 4.96
621 639 1.566298 CCCTTCCTCAACCTCCCCAG 61.566 65.000 0.00 0.00 0.00 4.45
696 714 2.043450 CAGCTCTCCCTCCCGTCT 60.043 66.667 0.00 0.00 0.00 4.18
698 716 2.277404 GCTCTCCCTCCCGTCTCT 59.723 66.667 0.00 0.00 0.00 3.10
700 718 1.919771 CTCTCCCTCCCGTCTCTCT 59.080 63.158 0.00 0.00 0.00 3.10
701 719 0.465460 CTCTCCCTCCCGTCTCTCTG 60.465 65.000 0.00 0.00 0.00 3.35
702 720 1.208844 TCTCCCTCCCGTCTCTCTGT 61.209 60.000 0.00 0.00 0.00 3.41
706 724 0.254747 CCTCCCGTCTCTCTGTCTCT 59.745 60.000 0.00 0.00 0.00 3.10
707 725 1.663695 CTCCCGTCTCTCTGTCTCTC 58.336 60.000 0.00 0.00 0.00 3.20
709 727 2.432874 CTCCCGTCTCTCTGTCTCTCTA 59.567 54.545 0.00 0.00 0.00 2.43
710 728 2.432874 TCCCGTCTCTCTGTCTCTCTAG 59.567 54.545 0.00 0.00 0.00 2.43
711 729 2.210116 CCGTCTCTCTGTCTCTCTAGC 58.790 57.143 0.00 0.00 0.00 3.42
712 730 2.210116 CGTCTCTCTGTCTCTCTAGCC 58.790 57.143 0.00 0.00 0.00 3.93
713 731 2.572290 GTCTCTCTGTCTCTCTAGCCC 58.428 57.143 0.00 0.00 0.00 5.19
714 732 2.172717 GTCTCTCTGTCTCTCTAGCCCT 59.827 54.545 0.00 0.00 0.00 5.19
715 733 2.849943 TCTCTCTGTCTCTCTAGCCCTT 59.150 50.000 0.00 0.00 0.00 3.95
716 734 4.041464 TCTCTCTGTCTCTCTAGCCCTTA 58.959 47.826 0.00 0.00 0.00 2.69
717 735 4.134563 CTCTCTGTCTCTCTAGCCCTTAC 58.865 52.174 0.00 0.00 0.00 2.34
748 766 3.943671 TTGGTTTCCAGAACTCAAGGA 57.056 42.857 0.00 0.00 33.81 3.36
755 788 3.107601 TCCAGAACTCAAGGATCCGAAT 58.892 45.455 5.98 0.00 0.00 3.34
760 793 2.911484 ACTCAAGGATCCGAATTCTGC 58.089 47.619 5.98 0.00 0.00 4.26
761 794 2.503356 ACTCAAGGATCCGAATTCTGCT 59.497 45.455 5.98 0.00 0.00 4.24
765 798 5.784177 TCAAGGATCCGAATTCTGCTATAC 58.216 41.667 5.98 0.00 0.00 1.47
793 826 7.019774 TCAGCATTCTAATTTCTATGTGCAC 57.980 36.000 10.75 10.75 34.01 4.57
802 835 6.432607 AATTTCTATGTGCACAGTCATCTG 57.567 37.500 25.84 9.44 46.18 2.90
831 864 7.540474 TGGTCCTATAATTGTAGCCTTCTAG 57.460 40.000 3.79 0.00 0.00 2.43
846 967 9.389755 GTAGCCTTCTAGAAGAGAAAATGAATT 57.610 33.333 30.17 6.92 43.75 2.17
876 997 9.244292 TCACTGACAGTGTTACTATCTCTAAAT 57.756 33.333 29.87 0.00 46.03 1.40
879 1000 9.509855 CTGACAGTGTTACTATCTCTAAATCAC 57.490 37.037 0.00 0.00 0.00 3.06
881 1002 6.973474 ACAGTGTTACTATCTCTAAATCACGC 59.027 38.462 0.00 0.00 0.00 5.34
885 1006 9.119329 GTGTTACTATCTCTAAATCACGCTATG 57.881 37.037 0.00 0.00 0.00 2.23
895 1016 4.946784 AATCACGCTATGTTTGGAGAAC 57.053 40.909 0.00 0.00 0.00 3.01
897 1018 3.937814 TCACGCTATGTTTGGAGAACAT 58.062 40.909 9.11 9.11 42.82 2.71
945 1066 3.948473 GGTTTATCCTTTCAAGGCCTCTC 59.052 47.826 5.23 0.00 46.06 3.20
946 1067 4.324641 GGTTTATCCTTTCAAGGCCTCTCT 60.325 45.833 5.23 0.00 46.06 3.10
949 1076 2.555664 TCCTTTCAAGGCCTCTCTGAT 58.444 47.619 5.23 0.00 46.06 2.90
968 1095 2.480853 TTCGACGCGCCTTGAGCTAA 62.481 55.000 5.73 0.00 40.39 3.09
1053 1180 2.034104 TTGTGGCATCTCTGATGCTC 57.966 50.000 25.29 19.67 44.02 4.26
1070 1197 0.979665 CTCACCAAGAGGAAGGCTGA 59.020 55.000 0.00 0.00 40.84 4.26
1071 1198 0.979665 TCACCAAGAGGAAGGCTGAG 59.020 55.000 0.00 0.00 38.69 3.35
1072 1199 0.979665 CACCAAGAGGAAGGCTGAGA 59.020 55.000 0.00 0.00 38.69 3.27
1073 1200 1.349026 CACCAAGAGGAAGGCTGAGAA 59.651 52.381 0.00 0.00 38.69 2.87
1074 1201 1.627834 ACCAAGAGGAAGGCTGAGAAG 59.372 52.381 0.00 0.00 38.69 2.85
1075 1202 1.065564 CCAAGAGGAAGGCTGAGAAGG 60.066 57.143 0.00 0.00 36.89 3.46
1076 1203 0.617935 AAGAGGAAGGCTGAGAAGGC 59.382 55.000 0.00 0.00 0.00 4.35
1078 1205 0.107752 GAGGAAGGCTGAGAAGGCTG 60.108 60.000 2.25 0.00 44.26 4.85
1092 1219 1.450360 AGGCTGAGAAGAAAAGGGGT 58.550 50.000 0.00 0.00 0.00 4.95
1155 1282 1.218316 CTACAGGTCCGAACAGCCC 59.782 63.158 0.00 0.00 0.00 5.19
1161 1288 3.744719 TCCGAACAGCCCGTCGAG 61.745 66.667 0.00 0.00 0.00 4.04
1275 1402 4.144297 TCATTTCAAGGGAAACAGAGGTG 58.856 43.478 0.00 0.00 45.22 4.00
1338 1465 6.539103 GGGAGTATGAGTGGAAAACTTACATC 59.461 42.308 0.00 0.00 40.07 3.06
1490 1617 8.861086 TCCACCAATGTACTAAAATTAGCAAAA 58.139 29.630 0.13 0.00 34.09 2.44
1585 1712 5.819379 TCTTCATGTATCTTCAACTGCCATC 59.181 40.000 0.00 0.00 0.00 3.51
1588 1715 3.785486 TGTATCTTCAACTGCCATCTCG 58.215 45.455 0.00 0.00 0.00 4.04
1643 1770 3.306225 GGATGCTGGTTCTGCATTTTCAA 60.306 43.478 12.24 0.00 46.13 2.69
1707 1834 2.042686 ATGCATGCCACGACAATAGT 57.957 45.000 16.68 0.00 0.00 2.12
1735 1862 7.118422 ACATTCTCGTAAGTTCTGTAAAAGC 57.882 36.000 0.00 0.00 39.48 3.51
1770 1901 1.153429 GGTCCGATCCCGTTCAAGG 60.153 63.158 0.00 0.00 0.00 3.61
1822 1953 2.242408 ATTGGCAGGGGTTGGGATCC 62.242 60.000 1.92 1.92 0.00 3.36
1901 2033 1.091537 ACACATTTATGAACGCGGGG 58.908 50.000 12.47 0.00 0.00 5.73
1935 2067 5.257262 TGCTATGGCCATGTTACAAGTAAA 58.743 37.500 29.04 2.08 37.74 2.01
1950 2082 8.424731 GTTACAAGTAAATTTTTCCATGAAGCG 58.575 33.333 0.00 0.00 0.00 4.68
1983 2115 9.793259 ATGTTCCTATTCTTACTCTTTTGACAA 57.207 29.630 0.00 0.00 0.00 3.18
2132 2269 8.952278 AGTAGACTAACGATGGAGATATGAATC 58.048 37.037 0.00 0.00 0.00 2.52
2176 2314 9.883142 TTCTCCACATAAACATTGTTTTCTTTT 57.117 25.926 19.15 0.00 0.00 2.27
2204 2342 5.927281 ACATGGAATTGCTTCAGCTTAAT 57.073 34.783 0.00 0.00 42.66 1.40
2440 2578 6.821031 ATGAGGTCGGTTCACTATATACTC 57.179 41.667 0.00 0.00 0.00 2.59
2441 2579 5.938279 TGAGGTCGGTTCACTATATACTCT 58.062 41.667 0.00 0.00 0.00 3.24
2464 2602 3.503363 GTGCATCCATGAACTCAAGACAA 59.497 43.478 0.00 0.00 33.39 3.18
2468 2606 4.687901 TCCATGAACTCAAGACAACTGA 57.312 40.909 0.00 0.00 0.00 3.41
2611 2750 9.905713 TCAGAATAAAGCATACCTTATGTTTCT 57.094 29.630 0.00 0.00 38.42 2.52
2624 2763 2.700722 TGTTTCTGCTGTGTGGTACA 57.299 45.000 0.00 0.00 37.78 2.90
2917 3056 3.560636 ATGTATACAAGTGGGAGCACC 57.439 47.619 10.14 0.00 40.81 5.01
2952 3091 5.363580 AGGTTTGTTCAAATCCATGTTCACT 59.636 36.000 5.11 0.00 0.00 3.41
3085 3225 1.484240 GTTCATCTGCTCTACAGCCCT 59.516 52.381 0.00 0.00 46.26 5.19
3101 3241 0.250234 CCCTGCTGATCGAGGAAACA 59.750 55.000 6.78 0.00 0.00 2.83
3563 3703 6.501781 GGTGCCATCATCTATTTCTTTTCTG 58.498 40.000 0.00 0.00 0.00 3.02
3753 3943 1.949525 GCTTGTCTTCCAGAAAGTGCA 59.050 47.619 0.00 0.00 36.31 4.57
3942 4132 8.537016 TGTTTATACTCCACTATTACTTGCTGT 58.463 33.333 0.00 0.00 0.00 4.40
4103 4300 1.202428 GGCGGGACATTCTCTGAGTAC 60.202 57.143 4.32 0.00 0.00 2.73
4137 4334 1.302511 GGTCGTGTTGGTGCTCCAT 60.303 57.895 8.61 0.00 43.91 3.41
4163 4360 9.491675 TTGTCTTGTTCGTTCATTAAGGTATAA 57.508 29.630 0.00 0.00 0.00 0.98
4299 4503 4.705337 AGAAAGATGTCTGACGAGGTAC 57.295 45.455 2.98 0.00 0.00 3.34
4325 4529 1.681264 GAAGGTGTTCCCCAAGTTGTG 59.319 52.381 1.45 0.00 0.00 3.33
4411 4615 3.198068 CATGTGTGTGGATAGTGCTACC 58.802 50.000 0.00 0.00 0.00 3.18
4437 4641 3.069872 TCGGTAACTTTGCAGTTAGTCCA 59.930 43.478 0.00 0.00 44.61 4.02
4520 4724 9.391006 CCCTAAGCATAAAACTAGAAACACATA 57.609 33.333 0.00 0.00 0.00 2.29
4575 4779 2.676748 AGTGGATTTTGTCTTTGCCCA 58.323 42.857 0.00 0.00 0.00 5.36
4710 4914 0.918983 AATGCCTCGGGGAGAAATCA 59.081 50.000 4.80 0.00 33.58 2.57
4782 4986 7.176690 CCAAAACAAATGAGGTCTACAAGGTAT 59.823 37.037 0.00 0.00 0.00 2.73
4893 5097 4.027437 GAGGAATGAGGTGGTTCTACTCT 58.973 47.826 0.00 0.00 32.58 3.24
4938 5142 1.952296 GATGGCTGCCTCGAAATCATT 59.048 47.619 21.03 0.00 0.00 2.57
4942 5146 1.739466 GCTGCCTCGAAATCATTGACA 59.261 47.619 0.00 0.00 0.00 3.58
5026 5230 4.249661 GTTTCTTTTTCTGGCCAAACACA 58.750 39.130 7.01 0.00 0.00 3.72
5070 5274 0.470766 TACGACCAGGCCAAACAAGT 59.529 50.000 5.01 0.00 0.00 3.16
5103 5307 4.318332 TCTCTTCCTAACGAAGTACACGA 58.682 43.478 16.81 0.00 45.00 4.35
5163 5367 1.298157 ACAACATCATGGTCCACGCG 61.298 55.000 3.53 3.53 0.00 6.01
5166 5370 1.227645 CATCATGGTCCACGCGGAT 60.228 57.895 12.47 0.00 45.33 4.18
5220 5424 2.580867 GCGCACGGTGAGCTAGAG 60.581 66.667 26.28 3.43 40.12 2.43
5250 5454 4.141869 GCCTCAAAACAAGGGATTGCATAT 60.142 41.667 0.00 0.00 34.26 1.78
5260 5464 6.041296 ACAAGGGATTGCATATTCTGATTTCC 59.959 38.462 0.00 0.00 0.00 3.13
5324 5528 2.184167 CGTTGGCAAAGGTCCGTGT 61.184 57.895 0.00 0.00 0.00 4.49
5351 5555 3.686241 CCTGCACTCTGATCGAATTTTCA 59.314 43.478 0.00 0.00 0.00 2.69
5361 5565 4.213270 TGATCGAATTTTCAGTCGTTTGCT 59.787 37.500 0.00 0.00 41.31 3.91
5388 5592 1.127766 TGCACGCGTGATTGATTGTAC 59.872 47.619 41.19 19.88 0.00 2.90
5394 5598 2.476185 GCGTGATTGATTGTACTGTGCC 60.476 50.000 0.00 0.00 0.00 5.01
5409 5613 1.539388 TGTGCCGTTGCTCTAAATTGG 59.461 47.619 0.00 0.00 38.71 3.16
5726 5952 7.255312 GGATCGAGACAGACAGTATATTGAACT 60.255 40.741 1.74 0.00 0.00 3.01
5728 5954 6.824196 TCGAGACAGACAGTATATTGAACTCT 59.176 38.462 1.74 0.00 0.00 3.24
5729 5955 7.985752 TCGAGACAGACAGTATATTGAACTCTA 59.014 37.037 1.74 0.00 0.00 2.43
5730 5956 8.279800 CGAGACAGACAGTATATTGAACTCTAG 58.720 40.741 1.74 0.00 0.00 2.43
5731 5957 9.116067 GAGACAGACAGTATATTGAACTCTAGT 57.884 37.037 1.74 0.00 0.00 2.57
5753 5980 9.181805 CTAGTATGTGTACTTGATGATTTACCG 57.818 37.037 0.00 0.00 41.35 4.02
5757 5984 5.992829 TGTGTACTTGATGATTTACCGTTGT 59.007 36.000 0.00 0.00 0.00 3.32
5769 5996 7.324935 TGATTTACCGTTGTATTTCAGCTAGA 58.675 34.615 0.00 0.00 0.00 2.43
5774 6001 5.127194 ACCGTTGTATTTCAGCTAGAGATCA 59.873 40.000 0.00 0.00 0.00 2.92
5834 6063 4.959596 ATCTTGCTGTCATGATTCACAC 57.040 40.909 0.00 0.00 34.56 3.82
5885 6114 6.997942 AGGTTCTGGGTATTAGTTATCTCC 57.002 41.667 0.00 0.00 0.00 3.71
5921 6150 7.816640 TGAAACATCAGCTTTTAGAATGTACC 58.183 34.615 0.00 0.00 0.00 3.34
5949 6178 9.180678 CCACTGTTCACTGTTATAAAATGTTTC 57.819 33.333 0.00 0.00 0.00 2.78
5950 6179 9.950680 CACTGTTCACTGTTATAAAATGTTTCT 57.049 29.630 0.00 0.00 0.00 2.52
6027 6358 7.318141 TCCCTCTACAACTTTGTACTAAATCG 58.682 38.462 0.00 0.00 42.35 3.34
6028 6359 6.035758 CCCTCTACAACTTTGTACTAAATCGC 59.964 42.308 0.00 0.00 42.35 4.58
6042 6373 6.526566 ACTAAATCGCCGACAATTAATCTC 57.473 37.500 0.00 0.00 0.00 2.75
6048 6379 3.243877 CGCCGACAATTAATCTCAGAGTG 59.756 47.826 0.00 0.00 0.00 3.51
6049 6380 4.184629 GCCGACAATTAATCTCAGAGTGT 58.815 43.478 0.00 0.00 0.00 3.55
6051 6382 5.810587 GCCGACAATTAATCTCAGAGTGTAA 59.189 40.000 0.00 0.00 0.00 2.41
6073 6404 9.093970 TGTAACATCTTATAATTGTGAACGGAG 57.906 33.333 2.86 0.00 0.00 4.63
6156 6544 2.033801 GCCATGCTACACATAAGCCAAG 59.966 50.000 0.00 0.00 39.30 3.61
6159 6547 4.158394 CCATGCTACACATAAGCCAAGTTT 59.842 41.667 0.00 0.00 39.30 2.66
6256 6647 8.635765 TTTCTAACCATGCAGAAAAAGAGTAT 57.364 30.769 10.98 0.00 37.72 2.12
6373 6765 7.351454 ACCACCAGTAGGATTAAAACCCATATA 59.649 37.037 0.00 0.00 38.69 0.86
6374 6766 8.221944 CCACCAGTAGGATTAAAACCCATATAA 58.778 37.037 0.00 0.00 38.69 0.98
6448 6840 2.419436 CCCACCACAACCCAAAAAGAAC 60.419 50.000 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.872113 ATCTCCTTTACCAGAAAAGCATAAG 57.128 36.000 0.00 0.00 35.53 1.73
1 2 9.396022 CTAATCTCCTTTACCAGAAAAGCATAA 57.604 33.333 0.00 0.00 35.53 1.90
2 3 8.768397 TCTAATCTCCTTTACCAGAAAAGCATA 58.232 33.333 0.00 0.00 35.53 3.14
3 4 7.633789 TCTAATCTCCTTTACCAGAAAAGCAT 58.366 34.615 0.00 0.00 35.53 3.79
4 5 7.016153 TCTAATCTCCTTTACCAGAAAAGCA 57.984 36.000 0.00 0.00 35.53 3.91
5 6 9.785982 ATATCTAATCTCCTTTACCAGAAAAGC 57.214 33.333 0.00 0.00 35.53 3.51
45 46 9.922305 GCAAGACATGAGTAATACAAGATTAAC 57.078 33.333 0.00 0.00 0.00 2.01
46 47 8.817100 CGCAAGACATGAGTAATACAAGATTAA 58.183 33.333 0.00 0.00 43.02 1.40
47 48 7.438160 CCGCAAGACATGAGTAATACAAGATTA 59.562 37.037 0.00 0.00 43.02 1.75
48 49 6.258727 CCGCAAGACATGAGTAATACAAGATT 59.741 38.462 0.00 0.00 43.02 2.40
49 50 5.755375 CCGCAAGACATGAGTAATACAAGAT 59.245 40.000 0.00 0.00 43.02 2.40
50 51 5.109210 CCGCAAGACATGAGTAATACAAGA 58.891 41.667 0.00 0.00 43.02 3.02
51 52 4.870426 ACCGCAAGACATGAGTAATACAAG 59.130 41.667 0.00 0.00 43.02 3.16
52 53 4.827692 ACCGCAAGACATGAGTAATACAA 58.172 39.130 0.00 0.00 43.02 2.41
53 54 4.430007 GACCGCAAGACATGAGTAATACA 58.570 43.478 0.00 0.00 43.02 2.29
54 55 3.486108 CGACCGCAAGACATGAGTAATAC 59.514 47.826 0.00 0.00 43.02 1.89
55 56 3.702330 CGACCGCAAGACATGAGTAATA 58.298 45.455 0.00 0.00 43.02 0.98
56 57 2.540515 CGACCGCAAGACATGAGTAAT 58.459 47.619 0.00 0.00 43.02 1.89
57 58 1.990799 CGACCGCAAGACATGAGTAA 58.009 50.000 0.00 0.00 43.02 2.24
58 59 0.457853 GCGACCGCAAGACATGAGTA 60.458 55.000 9.73 0.00 41.49 2.59
59 60 1.738099 GCGACCGCAAGACATGAGT 60.738 57.895 9.73 0.00 41.49 3.41
60 61 3.084579 GCGACCGCAAGACATGAG 58.915 61.111 9.73 0.00 41.49 2.90
70 71 1.226575 GGCCTTATTTTGCGACCGC 60.227 57.895 7.53 7.53 42.35 5.68
71 72 0.098728 CTGGCCTTATTTTGCGACCG 59.901 55.000 3.32 0.00 0.00 4.79
72 73 0.179137 GCTGGCCTTATTTTGCGACC 60.179 55.000 3.32 0.00 0.00 4.79
73 74 0.523335 CGCTGGCCTTATTTTGCGAC 60.523 55.000 3.32 0.00 45.15 5.19
74 75 1.800032 CGCTGGCCTTATTTTGCGA 59.200 52.632 3.32 0.00 45.15 5.10
75 76 0.381801 ATCGCTGGCCTTATTTTGCG 59.618 50.000 3.32 8.80 43.95 4.85
76 77 2.618709 ACTATCGCTGGCCTTATTTTGC 59.381 45.455 3.32 0.00 0.00 3.68
77 78 4.130118 AGACTATCGCTGGCCTTATTTTG 58.870 43.478 3.32 0.00 0.00 2.44
78 79 4.423625 AGACTATCGCTGGCCTTATTTT 57.576 40.909 3.32 0.00 0.00 1.82
79 80 4.561734 GCTAGACTATCGCTGGCCTTATTT 60.562 45.833 3.32 0.00 34.24 1.40
80 81 3.056465 GCTAGACTATCGCTGGCCTTATT 60.056 47.826 3.32 0.00 34.24 1.40
81 82 2.494073 GCTAGACTATCGCTGGCCTTAT 59.506 50.000 3.32 0.00 34.24 1.73
82 83 1.887198 GCTAGACTATCGCTGGCCTTA 59.113 52.381 3.32 0.00 34.24 2.69
83 84 0.676736 GCTAGACTATCGCTGGCCTT 59.323 55.000 3.32 0.00 34.24 4.35
84 85 0.178975 AGCTAGACTATCGCTGGCCT 60.179 55.000 3.32 0.00 40.29 5.19
85 86 0.038709 CAGCTAGACTATCGCTGGCC 60.039 60.000 13.45 0.00 45.47 5.36
86 87 3.488048 CAGCTAGACTATCGCTGGC 57.512 57.895 13.45 0.00 45.47 4.85
89 90 1.002251 GAACGCAGCTAGACTATCGCT 60.002 52.381 0.00 0.00 0.00 4.93
90 91 1.400550 GAACGCAGCTAGACTATCGC 58.599 55.000 0.00 0.00 0.00 4.58
91 92 1.660614 CCGAACGCAGCTAGACTATCG 60.661 57.143 0.00 0.81 0.00 2.92
92 93 1.334243 ACCGAACGCAGCTAGACTATC 59.666 52.381 0.00 0.00 0.00 2.08
93 94 1.390565 ACCGAACGCAGCTAGACTAT 58.609 50.000 0.00 0.00 0.00 2.12
94 95 1.938577 CTACCGAACGCAGCTAGACTA 59.061 52.381 0.00 0.00 0.00 2.59
95 96 0.733729 CTACCGAACGCAGCTAGACT 59.266 55.000 0.00 0.00 0.00 3.24
96 97 0.731417 TCTACCGAACGCAGCTAGAC 59.269 55.000 0.00 0.00 0.00 2.59
97 98 1.015109 CTCTACCGAACGCAGCTAGA 58.985 55.000 0.00 0.00 0.00 2.43
98 99 0.592754 GCTCTACCGAACGCAGCTAG 60.593 60.000 0.00 0.00 0.00 3.42
99 100 1.030488 AGCTCTACCGAACGCAGCTA 61.030 55.000 0.00 0.00 38.69 3.32
100 101 2.182030 GCTCTACCGAACGCAGCT 59.818 61.111 0.00 0.00 0.00 4.24
101 102 1.874466 GAGCTCTACCGAACGCAGC 60.874 63.158 6.43 0.00 0.00 5.25
102 103 0.109272 TTGAGCTCTACCGAACGCAG 60.109 55.000 16.19 0.00 0.00 5.18
103 104 0.109272 CTTGAGCTCTACCGAACGCA 60.109 55.000 16.19 0.00 0.00 5.24
104 105 0.802607 CCTTGAGCTCTACCGAACGC 60.803 60.000 16.19 0.00 0.00 4.84
105 106 0.526662 ACCTTGAGCTCTACCGAACG 59.473 55.000 16.19 0.00 0.00 3.95
106 107 3.015327 TCTACCTTGAGCTCTACCGAAC 58.985 50.000 16.19 0.00 0.00 3.95
107 108 3.361281 TCTACCTTGAGCTCTACCGAA 57.639 47.619 16.19 0.00 0.00 4.30
108 109 3.015327 GTTCTACCTTGAGCTCTACCGA 58.985 50.000 16.19 1.33 0.00 4.69
109 110 2.099427 GGTTCTACCTTGAGCTCTACCG 59.901 54.545 16.19 2.28 34.73 4.02
110 111 2.099427 CGGTTCTACCTTGAGCTCTACC 59.901 54.545 16.19 8.17 35.66 3.18
111 112 2.754002 ACGGTTCTACCTTGAGCTCTAC 59.246 50.000 16.19 0.58 35.66 2.59
112 113 2.753452 CACGGTTCTACCTTGAGCTCTA 59.247 50.000 16.19 6.47 39.65 2.43
113 114 1.546476 CACGGTTCTACCTTGAGCTCT 59.454 52.381 16.19 0.00 39.65 4.09
114 115 1.544691 TCACGGTTCTACCTTGAGCTC 59.455 52.381 6.82 6.82 40.99 4.09
115 116 1.272769 GTCACGGTTCTACCTTGAGCT 59.727 52.381 5.40 0.00 45.57 4.09
116 117 1.711206 GTCACGGTTCTACCTTGAGC 58.289 55.000 5.40 0.00 45.57 4.26
117 118 1.893801 AGGTCACGGTTCTACCTTGAG 59.106 52.381 5.40 0.00 45.57 3.02
118 119 1.616865 CAGGTCACGGTTCTACCTTGA 59.383 52.381 1.34 1.34 43.23 3.02
119 120 1.337823 CCAGGTCACGGTTCTACCTTG 60.338 57.143 4.30 0.00 41.75 3.61
120 121 0.974383 CCAGGTCACGGTTCTACCTT 59.026 55.000 4.30 0.00 41.75 3.50
121 122 0.113776 TCCAGGTCACGGTTCTACCT 59.886 55.000 1.67 1.67 44.54 3.08
122 123 1.192428 ATCCAGGTCACGGTTCTACC 58.808 55.000 0.00 0.00 34.05 3.18
123 124 2.618053 CAATCCAGGTCACGGTTCTAC 58.382 52.381 0.00 0.00 0.00 2.59
124 125 1.553248 CCAATCCAGGTCACGGTTCTA 59.447 52.381 0.00 0.00 0.00 2.10
125 126 0.324943 CCAATCCAGGTCACGGTTCT 59.675 55.000 0.00 0.00 0.00 3.01
126 127 0.036306 ACCAATCCAGGTCACGGTTC 59.964 55.000 0.00 0.00 37.28 3.62
127 128 0.476771 AACCAATCCAGGTCACGGTT 59.523 50.000 0.00 0.00 42.25 4.44
128 129 0.036306 GAACCAATCCAGGTCACGGT 59.964 55.000 0.00 0.00 42.25 4.83
129 130 1.019278 CGAACCAATCCAGGTCACGG 61.019 60.000 0.00 0.00 42.25 4.94
130 131 1.019278 CCGAACCAATCCAGGTCACG 61.019 60.000 0.00 0.00 42.25 4.35
131 132 1.305930 GCCGAACCAATCCAGGTCAC 61.306 60.000 0.00 0.00 42.25 3.67
132 133 1.002624 GCCGAACCAATCCAGGTCA 60.003 57.895 0.00 0.00 42.25 4.02
133 134 0.744771 GAGCCGAACCAATCCAGGTC 60.745 60.000 0.00 0.00 42.25 3.85
134 135 1.299976 GAGCCGAACCAATCCAGGT 59.700 57.895 0.00 0.00 45.91 4.00
135 136 1.452108 GGAGCCGAACCAATCCAGG 60.452 63.158 0.00 0.00 0.00 4.45
136 137 0.462759 GAGGAGCCGAACCAATCCAG 60.463 60.000 0.00 0.00 34.08 3.86
137 138 1.602237 GAGGAGCCGAACCAATCCA 59.398 57.895 0.00 0.00 34.08 3.41
138 139 1.153147 GGAGGAGCCGAACCAATCC 60.153 63.158 0.00 0.00 0.00 3.01
139 140 4.542075 GGAGGAGCCGAACCAATC 57.458 61.111 0.00 0.00 0.00 2.67
153 154 3.868757 TCAGTTCTAACACATCCGGAG 57.131 47.619 11.34 4.72 0.00 4.63
154 155 4.503910 CAATCAGTTCTAACACATCCGGA 58.496 43.478 6.61 6.61 0.00 5.14
155 156 3.063997 GCAATCAGTTCTAACACATCCGG 59.936 47.826 0.00 0.00 0.00 5.14
156 157 3.242091 CGCAATCAGTTCTAACACATCCG 60.242 47.826 0.00 0.00 0.00 4.18
157 158 3.932710 TCGCAATCAGTTCTAACACATCC 59.067 43.478 0.00 0.00 0.00 3.51
158 159 5.496387 CATCGCAATCAGTTCTAACACATC 58.504 41.667 0.00 0.00 0.00 3.06
159 160 4.333649 CCATCGCAATCAGTTCTAACACAT 59.666 41.667 0.00 0.00 0.00 3.21
160 161 3.684305 CCATCGCAATCAGTTCTAACACA 59.316 43.478 0.00 0.00 0.00 3.72
161 162 3.932710 TCCATCGCAATCAGTTCTAACAC 59.067 43.478 0.00 0.00 0.00 3.32
162 163 4.200838 TCCATCGCAATCAGTTCTAACA 57.799 40.909 0.00 0.00 0.00 2.41
163 164 5.065218 ACAATCCATCGCAATCAGTTCTAAC 59.935 40.000 0.00 0.00 0.00 2.34
164 165 5.185454 ACAATCCATCGCAATCAGTTCTAA 58.815 37.500 0.00 0.00 0.00 2.10
165 166 4.769688 ACAATCCATCGCAATCAGTTCTA 58.230 39.130 0.00 0.00 0.00 2.10
166 167 3.614092 ACAATCCATCGCAATCAGTTCT 58.386 40.909 0.00 0.00 0.00 3.01
167 168 4.572389 AGTACAATCCATCGCAATCAGTTC 59.428 41.667 0.00 0.00 0.00 3.01
168 169 4.333649 CAGTACAATCCATCGCAATCAGTT 59.666 41.667 0.00 0.00 0.00 3.16
169 170 3.873361 CAGTACAATCCATCGCAATCAGT 59.127 43.478 0.00 0.00 0.00 3.41
170 171 4.122046 TCAGTACAATCCATCGCAATCAG 58.878 43.478 0.00 0.00 0.00 2.90
171 172 4.135747 TCAGTACAATCCATCGCAATCA 57.864 40.909 0.00 0.00 0.00 2.57
172 173 6.974932 ATATCAGTACAATCCATCGCAATC 57.025 37.500 0.00 0.00 0.00 2.67
173 174 9.102757 GATAATATCAGTACAATCCATCGCAAT 57.897 33.333 0.00 0.00 0.00 3.56
174 175 8.314021 AGATAATATCAGTACAATCCATCGCAA 58.686 33.333 2.84 0.00 0.00 4.85
175 176 7.761249 CAGATAATATCAGTACAATCCATCGCA 59.239 37.037 2.84 0.00 0.00 5.10
176 177 7.976175 TCAGATAATATCAGTACAATCCATCGC 59.024 37.037 2.84 0.00 0.00 4.58
177 178 9.513727 CTCAGATAATATCAGTACAATCCATCG 57.486 37.037 2.84 0.00 0.00 3.84
196 197 9.444600 GGGTTCAAAACTTGTATTACTCAGATA 57.555 33.333 0.00 0.00 0.00 1.98
197 198 7.119262 CGGGTTCAAAACTTGTATTACTCAGAT 59.881 37.037 0.00 0.00 0.00 2.90
198 199 6.425721 CGGGTTCAAAACTTGTATTACTCAGA 59.574 38.462 0.00 0.00 0.00 3.27
199 200 6.599437 CGGGTTCAAAACTTGTATTACTCAG 58.401 40.000 0.00 0.00 0.00 3.35
200 201 5.049267 GCGGGTTCAAAACTTGTATTACTCA 60.049 40.000 0.00 0.00 0.00 3.41
201 202 5.049267 TGCGGGTTCAAAACTTGTATTACTC 60.049 40.000 0.00 0.00 0.00 2.59
202 203 4.822896 TGCGGGTTCAAAACTTGTATTACT 59.177 37.500 0.00 0.00 0.00 2.24
203 204 5.110940 TGCGGGTTCAAAACTTGTATTAC 57.889 39.130 0.00 0.00 0.00 1.89
204 205 5.769484 TTGCGGGTTCAAAACTTGTATTA 57.231 34.783 0.00 0.00 0.00 0.98
205 206 4.657436 TTGCGGGTTCAAAACTTGTATT 57.343 36.364 0.00 0.00 0.00 1.89
206 207 4.657436 TTTGCGGGTTCAAAACTTGTAT 57.343 36.364 0.00 0.00 33.47 2.29
207 208 4.451629 TTTTGCGGGTTCAAAACTTGTA 57.548 36.364 0.00 0.00 39.99 2.41
208 209 3.320673 TTTTGCGGGTTCAAAACTTGT 57.679 38.095 0.00 0.00 39.99 3.16
228 229 8.934023 TGTACTCCCTTAATTCTGATGTTTTT 57.066 30.769 0.00 0.00 0.00 1.94
229 230 9.533831 AATGTACTCCCTTAATTCTGATGTTTT 57.466 29.630 0.00 0.00 0.00 2.43
230 231 8.960591 CAATGTACTCCCTTAATTCTGATGTTT 58.039 33.333 0.00 0.00 0.00 2.83
231 232 8.328758 TCAATGTACTCCCTTAATTCTGATGTT 58.671 33.333 0.00 0.00 0.00 2.71
232 233 7.861629 TCAATGTACTCCCTTAATTCTGATGT 58.138 34.615 0.00 0.00 0.00 3.06
233 234 8.737168 TTCAATGTACTCCCTTAATTCTGATG 57.263 34.615 0.00 0.00 0.00 3.07
234 235 9.927081 ATTTCAATGTACTCCCTTAATTCTGAT 57.073 29.630 0.00 0.00 0.00 2.90
235 236 9.753674 AATTTCAATGTACTCCCTTAATTCTGA 57.246 29.630 0.00 0.00 0.00 3.27
238 239 9.503427 CGAAATTTCAATGTACTCCCTTAATTC 57.497 33.333 17.99 0.00 0.00 2.17
239 240 7.973944 GCGAAATTTCAATGTACTCCCTTAATT 59.026 33.333 17.99 0.00 0.00 1.40
240 241 7.122055 TGCGAAATTTCAATGTACTCCCTTAAT 59.878 33.333 17.99 0.00 0.00 1.40
241 242 6.431543 TGCGAAATTTCAATGTACTCCCTTAA 59.568 34.615 17.99 0.00 0.00 1.85
242 243 5.941058 TGCGAAATTTCAATGTACTCCCTTA 59.059 36.000 17.99 0.00 0.00 2.69
243 244 4.764823 TGCGAAATTTCAATGTACTCCCTT 59.235 37.500 17.99 0.00 0.00 3.95
244 245 4.331968 TGCGAAATTTCAATGTACTCCCT 58.668 39.130 17.99 0.00 0.00 4.20
245 246 4.695217 TGCGAAATTTCAATGTACTCCC 57.305 40.909 17.99 0.00 0.00 4.30
246 247 5.879237 TCATGCGAAATTTCAATGTACTCC 58.121 37.500 21.43 2.31 0.00 3.85
247 248 7.243487 TCTTCATGCGAAATTTCAATGTACTC 58.757 34.615 21.43 3.65 0.00 2.59
248 249 7.094634 ACTCTTCATGCGAAATTTCAATGTACT 60.095 33.333 21.43 6.90 0.00 2.73
249 250 7.023575 ACTCTTCATGCGAAATTTCAATGTAC 58.976 34.615 21.43 6.23 0.00 2.90
250 251 7.144722 ACTCTTCATGCGAAATTTCAATGTA 57.855 32.000 21.43 15.23 0.00 2.29
251 252 6.017400 ACTCTTCATGCGAAATTTCAATGT 57.983 33.333 21.43 7.47 0.00 2.71
252 253 6.669032 GCAACTCTTCATGCGAAATTTCAATG 60.669 38.462 17.99 18.24 32.17 2.82
253 254 5.346822 GCAACTCTTCATGCGAAATTTCAAT 59.653 36.000 17.99 8.08 32.17 2.57
254 255 4.681025 GCAACTCTTCATGCGAAATTTCAA 59.319 37.500 17.99 6.05 32.17 2.69
255 256 4.229096 GCAACTCTTCATGCGAAATTTCA 58.771 39.130 17.99 0.43 32.17 2.69
256 257 4.229096 TGCAACTCTTCATGCGAAATTTC 58.771 39.130 8.20 8.20 45.47 2.17
257 258 4.241590 TGCAACTCTTCATGCGAAATTT 57.758 36.364 0.00 0.00 45.47 1.82
258 259 3.921119 TGCAACTCTTCATGCGAAATT 57.079 38.095 0.00 0.00 45.47 1.82
259 260 4.395854 TGTATGCAACTCTTCATGCGAAAT 59.604 37.500 0.00 0.00 45.47 2.17
260 261 3.750652 TGTATGCAACTCTTCATGCGAAA 59.249 39.130 0.00 0.00 45.47 3.46
261 262 3.125146 GTGTATGCAACTCTTCATGCGAA 59.875 43.478 0.00 0.00 45.47 4.70
262 263 2.672874 GTGTATGCAACTCTTCATGCGA 59.327 45.455 0.00 0.00 45.47 5.10
263 264 2.535534 CGTGTATGCAACTCTTCATGCG 60.536 50.000 0.00 0.00 45.47 4.73
264 265 2.416547 ACGTGTATGCAACTCTTCATGC 59.583 45.455 0.00 0.00 42.86 4.06
265 266 3.181517 CCACGTGTATGCAACTCTTCATG 60.182 47.826 15.65 0.00 0.00 3.07
266 267 3.002791 CCACGTGTATGCAACTCTTCAT 58.997 45.455 15.65 0.00 0.00 2.57
267 268 2.036604 TCCACGTGTATGCAACTCTTCA 59.963 45.455 15.65 0.00 0.00 3.02
268 269 2.668457 CTCCACGTGTATGCAACTCTTC 59.332 50.000 15.65 0.00 0.00 2.87
269 270 2.299013 TCTCCACGTGTATGCAACTCTT 59.701 45.455 15.65 0.00 0.00 2.85
270 271 1.893137 TCTCCACGTGTATGCAACTCT 59.107 47.619 15.65 0.00 0.00 3.24
271 272 2.363788 TCTCCACGTGTATGCAACTC 57.636 50.000 15.65 0.00 0.00 3.01
272 273 2.806244 GTTTCTCCACGTGTATGCAACT 59.194 45.455 15.65 0.00 0.00 3.16
273 274 2.806244 AGTTTCTCCACGTGTATGCAAC 59.194 45.455 15.65 10.29 0.00 4.17
274 275 3.064207 GAGTTTCTCCACGTGTATGCAA 58.936 45.455 15.65 0.00 0.00 4.08
275 276 2.683968 GAGTTTCTCCACGTGTATGCA 58.316 47.619 15.65 0.00 0.00 3.96
313 314 1.807142 GTCTTTTCCTCTGGCTTTCCG 59.193 52.381 0.00 0.00 34.14 4.30
314 315 2.863809 TGTCTTTTCCTCTGGCTTTCC 58.136 47.619 0.00 0.00 0.00 3.13
364 382 2.258591 CAGGCTTTGCTGCTGCTG 59.741 61.111 17.00 0.77 40.48 4.41
383 401 1.674221 GGCGATCTATCTGGTGGCATC 60.674 57.143 0.00 0.00 0.00 3.91
536 554 1.178534 GCGGAGAGGGAGAGATGGAG 61.179 65.000 0.00 0.00 0.00 3.86
601 619 1.229853 GGGGAGGTTGAGGAAGGGA 60.230 63.158 0.00 0.00 0.00 4.20
620 638 2.690510 GAAGCAGGGGAGGGCTCT 60.691 66.667 0.00 0.00 40.01 4.09
621 639 3.803162 GGAAGCAGGGGAGGGCTC 61.803 72.222 0.00 0.00 40.01 4.70
664 682 3.470888 CTGGGAGCGGTACCTGGG 61.471 72.222 18.55 3.54 0.00 4.45
665 683 4.162690 GCTGGGAGCGGTACCTGG 62.163 72.222 22.51 13.78 0.00 4.45
696 714 3.783642 AGTAAGGGCTAGAGAGACAGAGA 59.216 47.826 0.00 0.00 28.74 3.10
698 716 3.117813 GGAGTAAGGGCTAGAGAGACAGA 60.118 52.174 0.00 0.00 28.74 3.41
700 718 2.421670 CGGAGTAAGGGCTAGAGAGACA 60.422 54.545 0.00 0.00 28.74 3.41
701 719 2.223745 CGGAGTAAGGGCTAGAGAGAC 58.776 57.143 0.00 0.00 0.00 3.36
702 720 1.845143 ACGGAGTAAGGGCTAGAGAGA 59.155 52.381 0.00 0.00 41.94 3.10
706 724 1.481871 CCAACGGAGTAAGGGCTAGA 58.518 55.000 0.00 0.00 45.00 2.43
707 725 0.464452 CCCAACGGAGTAAGGGCTAG 59.536 60.000 0.00 0.00 46.41 3.42
709 727 3.400188 CCCAACGGAGTAAGGGCT 58.600 61.111 0.00 0.00 46.41 5.19
712 730 1.202842 ACCAAACCCAACGGAGTAAGG 60.203 52.381 0.00 0.00 45.00 2.69
713 731 2.265589 ACCAAACCCAACGGAGTAAG 57.734 50.000 0.00 0.00 45.00 2.34
714 732 2.732844 AACCAAACCCAACGGAGTAA 57.267 45.000 0.00 0.00 45.00 2.24
715 733 2.574450 GAAACCAAACCCAACGGAGTA 58.426 47.619 0.00 0.00 45.00 2.59
717 735 0.671796 GGAAACCAAACCCAACGGAG 59.328 55.000 0.00 0.00 0.00 4.63
748 766 6.510879 TGATACGTATAGCAGAATTCGGAT 57.489 37.500 8.34 5.62 0.00 4.18
765 798 7.954248 GCACATAGAAATTAGAATGCTGATACG 59.046 37.037 0.00 0.00 0.00 3.06
802 835 8.919777 AAGGCTACAATTATAGGACCAATTAC 57.080 34.615 0.00 0.00 0.00 1.89
859 980 9.119329 CATAGCGTGATTTAGAGATAGTAACAC 57.881 37.037 0.00 0.00 0.00 3.32
867 988 6.582636 TCCAAACATAGCGTGATTTAGAGAT 58.417 36.000 0.00 0.00 0.00 2.75
869 990 6.042777 TCTCCAAACATAGCGTGATTTAGAG 58.957 40.000 0.00 3.44 0.00 2.43
876 997 3.394674 TGTTCTCCAAACATAGCGTGA 57.605 42.857 0.00 0.00 0.00 4.35
879 1000 4.033358 GTGAGATGTTCTCCAAACATAGCG 59.967 45.833 3.55 0.00 42.73 4.26
881 1002 5.738909 AGGTGAGATGTTCTCCAAACATAG 58.261 41.667 3.55 0.00 42.73 2.23
885 1006 4.008074 TGAGGTGAGATGTTCTCCAAAC 57.992 45.455 2.26 0.00 42.73 2.93
895 1016 5.191426 ACAATTCTTCCATGAGGTGAGATG 58.809 41.667 0.00 0.00 35.89 2.90
897 1018 4.916041 ACAATTCTTCCATGAGGTGAGA 57.084 40.909 0.00 0.00 35.89 3.27
945 1066 1.746727 CTCAAGGCGCGTCGAATCAG 61.747 60.000 8.43 0.00 0.00 2.90
946 1067 1.805539 CTCAAGGCGCGTCGAATCA 60.806 57.895 8.43 0.00 0.00 2.57
1053 1180 0.979665 TCTCAGCCTTCCTCTTGGTG 59.020 55.000 0.00 0.00 34.23 4.17
1070 1197 2.040947 CCCCTTTTCTTCTCAGCCTTCT 59.959 50.000 0.00 0.00 0.00 2.85
1071 1198 2.224892 ACCCCTTTTCTTCTCAGCCTTC 60.225 50.000 0.00 0.00 0.00 3.46
1072 1199 1.783365 ACCCCTTTTCTTCTCAGCCTT 59.217 47.619 0.00 0.00 0.00 4.35
1073 1200 1.352687 GACCCCTTTTCTTCTCAGCCT 59.647 52.381 0.00 0.00 0.00 4.58
1074 1201 1.352687 AGACCCCTTTTCTTCTCAGCC 59.647 52.381 0.00 0.00 0.00 4.85
1075 1202 2.431454 CAGACCCCTTTTCTTCTCAGC 58.569 52.381 0.00 0.00 0.00 4.26
1076 1203 2.431454 GCAGACCCCTTTTCTTCTCAG 58.569 52.381 0.00 0.00 0.00 3.35
1077 1204 1.073923 GGCAGACCCCTTTTCTTCTCA 59.926 52.381 0.00 0.00 0.00 3.27
1078 1205 1.827681 GGCAGACCCCTTTTCTTCTC 58.172 55.000 0.00 0.00 0.00 2.87
1092 1219 3.770040 CCCACATCGACGGGCAGA 61.770 66.667 3.59 0.00 35.09 4.26
1098 1225 1.446099 CTCACCACCCACATCGACG 60.446 63.158 0.00 0.00 0.00 5.12
1161 1288 0.322546 AAATCCCTTCCCAGTGCGTC 60.323 55.000 0.00 0.00 0.00 5.19
1275 1402 2.273538 ATGATCTTCCATCAGCAGCC 57.726 50.000 0.00 0.00 0.00 4.85
1338 1465 2.540361 GCATACAGCCTTGAATGCTTCG 60.540 50.000 0.00 0.00 41.16 3.79
1490 1617 1.282570 CGAAAGCACGGCACATGTT 59.717 52.632 0.00 0.00 0.00 2.71
1510 1637 2.753966 CGGCTTGATGCACGGAAGG 61.754 63.158 0.00 0.00 45.15 3.46
1675 1802 5.221028 CGTGGCATGCATTTTCCTATCTTTA 60.221 40.000 21.36 0.00 0.00 1.85
1732 1859 3.076032 ACCTCCCAAATAAGGACTTGCTT 59.924 43.478 0.00 0.00 36.46 3.91
1733 1860 2.649816 ACCTCCCAAATAAGGACTTGCT 59.350 45.455 0.00 0.00 36.46 3.91
1734 1861 3.017442 GACCTCCCAAATAAGGACTTGC 58.983 50.000 0.00 0.00 36.46 4.01
1735 1862 3.621558 GGACCTCCCAAATAAGGACTTG 58.378 50.000 0.00 0.00 36.46 3.16
1763 1894 0.178990 ACTGGGCCAAGACCTTGAAC 60.179 55.000 16.25 3.34 42.93 3.18
1770 1901 0.984995 AGTTAGGACTGGGCCAAGAC 59.015 55.000 16.25 7.81 33.99 3.01
1822 1953 1.153005 GGAAGCCTGATCCTGCCAG 60.153 63.158 0.32 0.00 33.98 4.85
1935 2067 6.721208 ACATATATCCCGCTTCATGGAAAAAT 59.279 34.615 0.00 0.00 33.54 1.82
1983 2115 7.090319 TCCAACCCTAGCATTTACATGATAT 57.910 36.000 0.00 0.00 30.83 1.63
2153 2291 9.883142 AGAAAAAGAAAACAATGTTTATGTGGA 57.117 25.926 12.11 0.00 0.00 4.02
2176 2314 4.321452 GCTGAAGCAATTCCATGTTCAGAA 60.321 41.667 18.85 4.73 44.56 3.02
2231 2369 7.980062 ACACACGCTTTTTCCAAAAATAAAAT 58.020 26.923 0.00 0.00 37.27 1.82
2237 2375 4.511826 ACAAACACACGCTTTTTCCAAAAA 59.488 33.333 0.00 0.00 36.53 1.94
2238 2376 4.058817 ACAAACACACGCTTTTTCCAAAA 58.941 34.783 0.00 0.00 0.00 2.44
2239 2377 3.654414 ACAAACACACGCTTTTTCCAAA 58.346 36.364 0.00 0.00 0.00 3.28
2240 2378 3.305398 ACAAACACACGCTTTTTCCAA 57.695 38.095 0.00 0.00 0.00 3.53
2241 2379 3.305398 AACAAACACACGCTTTTTCCA 57.695 38.095 0.00 0.00 0.00 3.53
2242 2380 4.801516 ACATAACAAACACACGCTTTTTCC 59.198 37.500 0.00 0.00 0.00 3.13
2243 2381 5.942325 ACATAACAAACACACGCTTTTTC 57.058 34.783 0.00 0.00 0.00 2.29
2244 2382 7.030768 AGTAACATAACAAACACACGCTTTTT 58.969 30.769 0.00 0.00 0.00 1.94
2250 2388 5.267009 TGCAAGTAACATAACAAACACACG 58.733 37.500 0.00 0.00 0.00 4.49
2252 2390 9.404348 CATAATGCAAGTAACATAACAAACACA 57.596 29.630 0.00 0.00 0.00 3.72
2440 2578 3.126514 GTCTTGAGTTCATGGATGCACAG 59.873 47.826 0.00 0.00 0.00 3.66
2441 2579 3.076621 GTCTTGAGTTCATGGATGCACA 58.923 45.455 0.00 0.00 0.00 4.57
2553 2691 4.806640 ATGCCAACCATTTCCTTAAGTG 57.193 40.909 0.97 0.00 0.00 3.16
2701 2840 9.420118 TCAAGTTGCCCATTTATATCAATAAGT 57.580 29.630 0.00 0.00 0.00 2.24
2917 3056 0.678950 AACAAACCTTGGGCATTCCG 59.321 50.000 0.00 0.00 38.76 4.30
3026 3166 6.015010 GCATTAGTGGTCTACATATCAGGAGT 60.015 42.308 0.00 0.00 0.00 3.85
3040 3180 4.095483 CAGAAAGGACATGCATTAGTGGTC 59.905 45.833 0.00 0.36 0.00 4.02
3085 3225 5.674525 AGAATAATGTTTCCTCGATCAGCA 58.325 37.500 0.00 0.00 0.00 4.41
3092 3232 8.664798 TGTACAAATGAGAATAATGTTTCCTCG 58.335 33.333 0.00 0.00 0.00 4.63
3341 3481 6.004574 AGCAGATATAATCGTCTAGACCACA 58.995 40.000 17.23 1.87 0.00 4.17
3540 3680 6.971184 CACAGAAAAGAAATAGATGATGGCAC 59.029 38.462 0.00 0.00 0.00 5.01
3753 3943 1.454479 CGGCCTCCCAAGATTGCAT 60.454 57.895 0.00 0.00 0.00 3.96
4103 4300 2.807967 ACGACCAACAGATGTGTCATTG 59.192 45.455 0.00 0.00 35.08 2.82
4137 4334 7.972832 ATACCTTAATGAACGAACAAGACAA 57.027 32.000 0.00 0.00 0.00 3.18
4206 4403 7.519366 AGCTTTGCTATGGAAAGTGGAACTAC 61.519 42.308 11.88 0.00 42.57 2.73
4299 4503 2.483014 TGGGGAACACCTTCAATACG 57.517 50.000 0.00 0.00 40.03 3.06
4325 4529 9.061610 CACAAACGAAATATTAACATGTCCTTC 57.938 33.333 0.00 0.00 0.00 3.46
4411 4615 4.929808 ACTAACTGCAAAGTTACCGATCTG 59.070 41.667 0.00 0.00 33.59 2.90
4437 4641 8.042515 AGACAAAATTGCCATGCATATTAACTT 58.957 29.630 0.00 0.00 38.76 2.66
4520 4724 5.519927 GCATAGGTTCTTTTTGCGCAATATT 59.480 36.000 25.64 6.64 0.00 1.28
4575 4779 6.824196 GGAAAGGGAGAAGAATAAAACTCGAT 59.176 38.462 0.00 0.00 0.00 3.59
4782 4986 9.570468 TTTGTAATATTACTGTGGTTGGTAACA 57.430 29.630 22.82 1.20 38.67 2.41
4802 5006 7.744087 AATCACAACATAGACAGCTTTGTAA 57.256 32.000 0.00 0.00 35.63 2.41
4875 5079 3.261897 CACCAGAGTAGAACCACCTCATT 59.738 47.826 0.00 0.00 0.00 2.57
4893 5097 2.037053 CAAACGCCCAATGTCACCA 58.963 52.632 0.00 0.00 0.00 4.17
4938 5142 7.565398 AGCTTAACTATATCCTTCTTCCTGTCA 59.435 37.037 0.00 0.00 0.00 3.58
4942 5146 8.554490 TGAAGCTTAACTATATCCTTCTTCCT 57.446 34.615 0.00 0.00 32.21 3.36
5103 5307 1.958288 AAGTAGCCTCCACCTGTGAT 58.042 50.000 0.00 0.00 0.00 3.06
5163 5367 2.576648 ACAGTAGTTTTGGGAGGGATCC 59.423 50.000 1.92 1.92 0.00 3.36
5166 5370 2.414612 ACACAGTAGTTTTGGGAGGGA 58.585 47.619 0.00 0.00 0.00 4.20
5220 5424 1.341209 CCTTGTTTTGAGGCCCAGTTC 59.659 52.381 0.00 0.00 0.00 3.01
5250 5454 2.680805 GCACAGATCGGGGAAATCAGAA 60.681 50.000 0.00 0.00 0.00 3.02
5324 5528 2.171003 TCGATCAGAGTGCAGGAGAAA 58.829 47.619 0.00 0.00 0.00 2.52
5351 5555 0.584876 GCAACGGTTAGCAAACGACT 59.415 50.000 12.23 0.00 36.39 4.18
5388 5592 2.414559 CCAATTTAGAGCAACGGCACAG 60.415 50.000 0.00 0.00 44.61 3.66
5394 5598 4.142816 CCTGAAGACCAATTTAGAGCAACG 60.143 45.833 0.00 0.00 0.00 4.10
5409 5613 2.185004 TTGCTTACCAGCCTGAAGAC 57.815 50.000 0.00 0.00 46.74 3.01
5605 5810 5.008911 TGAAACACAACACAGATGAGGAATG 59.991 40.000 0.00 0.00 0.00 2.67
5728 5954 8.689061 ACGGTAAATCATCAAGTACACATACTA 58.311 33.333 0.00 0.00 41.00 1.82
5729 5955 7.553334 ACGGTAAATCATCAAGTACACATACT 58.447 34.615 0.00 0.00 43.91 2.12
5730 5956 7.766219 ACGGTAAATCATCAAGTACACATAC 57.234 36.000 0.00 0.00 0.00 2.39
5731 5957 7.820386 ACAACGGTAAATCATCAAGTACACATA 59.180 33.333 0.00 0.00 0.00 2.29
5732 5958 6.653320 ACAACGGTAAATCATCAAGTACACAT 59.347 34.615 0.00 0.00 0.00 3.21
5753 5980 8.430801 AACATGATCTCTAGCTGAAATACAAC 57.569 34.615 0.00 0.00 0.00 3.32
5757 5984 7.508636 AGGAGAACATGATCTCTAGCTGAAATA 59.491 37.037 26.42 0.00 44.30 1.40
5769 5996 7.251321 AGTTTAACTGAGGAGAACATGATCT 57.749 36.000 4.99 4.99 0.00 2.75
5774 6001 7.067496 TGAGAAGTTTAACTGAGGAGAACAT 57.933 36.000 0.00 0.00 0.00 2.71
5834 6063 4.820897 TCCTTGTGTAGCAGTAACTCATG 58.179 43.478 0.00 0.00 0.00 3.07
5885 6114 7.858052 AAGCTGATGTTTCAAAGAATTTACG 57.142 32.000 0.00 0.00 35.03 3.18
5921 6150 6.208599 ACATTTTATAACAGTGAACAGTGGGG 59.791 38.462 13.14 0.00 36.10 4.96
6027 6358 4.184629 ACACTCTGAGATTAATTGTCGGC 58.815 43.478 12.44 0.00 0.00 5.54
6028 6359 6.811665 TGTTACACTCTGAGATTAATTGTCGG 59.188 38.462 12.44 0.00 0.00 4.79
6048 6379 8.548721 CCTCCGTTCACAATTATAAGATGTTAC 58.451 37.037 4.41 5.55 0.00 2.50
6049 6380 7.713507 CCCTCCGTTCACAATTATAAGATGTTA 59.286 37.037 4.41 0.00 0.00 2.41
6051 6382 6.055588 CCCTCCGTTCACAATTATAAGATGT 58.944 40.000 1.82 1.82 0.00 3.06
6073 6404 4.337555 TCACTGTTCTAATACGCTACTCCC 59.662 45.833 0.00 0.00 0.00 4.30
6147 6478 7.745717 TCATATAGGCTACAAACTTGGCTTAT 58.254 34.615 0.00 0.00 37.73 1.73
6148 6479 7.131907 TCATATAGGCTACAAACTTGGCTTA 57.868 36.000 0.00 0.00 37.73 3.09
6150 6481 5.630415 TCATATAGGCTACAAACTTGGCT 57.370 39.130 0.00 0.00 39.84 4.75
6151 6482 6.884280 ATTCATATAGGCTACAAACTTGGC 57.116 37.500 0.00 0.00 0.00 4.52
6156 6544 7.707104 ACTTGCAATTCATATAGGCTACAAAC 58.293 34.615 0.00 0.00 0.00 2.93
6159 6547 7.339212 ACAAACTTGCAATTCATATAGGCTACA 59.661 33.333 0.00 0.00 0.00 2.74
6256 6647 8.742777 CCACTCTAATTCCTTGATTCAAATTCA 58.257 33.333 0.01 0.00 0.00 2.57
6373 6765 0.323178 CTGGATTGCTGCTCCTGGTT 60.323 55.000 9.08 0.00 33.69 3.67
6374 6766 1.302285 CTGGATTGCTGCTCCTGGT 59.698 57.895 9.08 0.00 33.69 4.00
6448 6840 2.473984 GACACTTCCAGTACCGTTTTCG 59.526 50.000 0.00 0.00 43.67 3.46



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.