Multiple sequence alignment - TraesCS4A01G206700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G206700 chr4A 100.000 7768 0 0 1 7768 500138035 500145802 0.000000e+00 14345.0
1 TraesCS4A01G206700 chr4A 97.059 34 1 0 2891 2924 645354733 645354700 3.030000e-04 58.4
2 TraesCS4A01G206700 chr4A 100.000 30 0 0 2886 2915 601761846 601761875 1.000000e-03 56.5
3 TraesCS4A01G206700 chr4B 93.302 4539 205 41 2942 7419 123499175 123503675 0.000000e+00 6606.0
4 TraesCS4A01G206700 chr4B 90.986 1187 77 18 1372 2546 123497919 123499087 0.000000e+00 1572.0
5 TraesCS4A01G206700 chr4B 86.730 1364 77 41 59 1379 123496442 123497744 0.000000e+00 1421.0
6 TraesCS4A01G206700 chr4B 90.583 977 55 8 3407 4381 578033074 578032133 0.000000e+00 1260.0
7 TraesCS4A01G206700 chr4B 93.367 196 13 0 7428 7623 123504386 123504581 2.740000e-74 291.0
8 TraesCS4A01G206700 chr4B 94.792 96 3 2 2800 2893 123499081 123499176 1.750000e-31 148.0
9 TraesCS4A01G206700 chr4B 84.615 65 2 5 2891 2953 672300944 672300886 3.030000e-04 58.4
10 TraesCS4A01G206700 chr4B 96.970 33 1 0 1528 1560 2795409 2795377 1.000000e-03 56.5
11 TraesCS4A01G206700 chr4B 100.000 29 0 0 2912 2940 37119545 37119573 4.000000e-03 54.7
12 TraesCS4A01G206700 chr4D 93.517 4365 186 39 2922 7246 87544269 87548576 0.000000e+00 6403.0
13 TraesCS4A01G206700 chr4D 92.592 4522 230 53 2943 7419 85995579 86000040 0.000000e+00 6397.0
14 TraesCS4A01G206700 chr4D 92.519 2580 103 35 381 2913 87541464 87544000 0.000000e+00 3613.0
15 TraesCS4A01G206700 chr4D 90.166 1627 107 24 950 2549 85993893 85995493 0.000000e+00 2069.0
16 TraesCS4A01G206700 chr4D 82.436 353 43 6 7409 7761 87554311 87554644 2.740000e-74 291.0
17 TraesCS4A01G206700 chr4D 92.857 196 14 0 7428 7623 86000751 86000946 1.280000e-72 285.0
18 TraesCS4A01G206700 chr4D 85.824 261 19 5 343 591 85993644 85993898 2.150000e-65 261.0
19 TraesCS4A01G206700 chr4D 83.959 293 19 8 59 350 85992971 85993236 1.000000e-63 255.0
20 TraesCS4A01G206700 chr4D 82.534 292 16 14 80 369 87541149 87541407 2.820000e-54 224.0
21 TraesCS4A01G206700 chr4D 93.617 94 4 2 2800 2891 85995484 85995577 1.050000e-28 139.0
22 TraesCS4A01G206700 chr5D 82.993 441 33 20 3942 4381 21674876 21675275 2.060000e-95 361.0
23 TraesCS4A01G206700 chr7B 98.438 64 0 1 1 63 166587107 166587044 2.290000e-20 111.0
24 TraesCS4A01G206700 chr5B 100.000 60 0 0 1 60 29349693 29349634 2.290000e-20 111.0
25 TraesCS4A01G206700 chr5B 98.148 54 1 0 1 54 617595110 617595163 2.310000e-15 95.3
26 TraesCS4A01G206700 chr5B 94.444 36 2 0 1528 1563 710968344 710968309 1.000000e-03 56.5
27 TraesCS4A01G206700 chr6B 98.387 62 1 0 1 62 532909310 532909249 8.240000e-20 110.0
28 TraesCS4A01G206700 chr6B 98.333 60 1 0 1 60 159054257 159054198 1.070000e-18 106.0
29 TraesCS4A01G206700 chr3B 98.333 60 1 0 1 60 722204888 722204829 1.070000e-18 106.0
30 TraesCS4A01G206700 chr3B 90.909 44 1 2 1518 1560 779543955 779543996 1.000000e-03 56.5
31 TraesCS4A01G206700 chr2D 95.000 60 3 0 1 60 635890012 635889953 2.310000e-15 95.3
32 TraesCS4A01G206700 chr7A 88.333 60 6 1 1 60 32970311 32970253 3.890000e-08 71.3
33 TraesCS4A01G206700 chr7A 90.909 44 1 2 1518 1560 94776387 94776428 1.000000e-03 56.5
34 TraesCS4A01G206700 chr1D 96.970 33 1 0 1528 1560 63925371 63925339 1.000000e-03 56.5
35 TraesCS4A01G206700 chr1D 96.970 33 1 0 1528 1560 194469129 194469161 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G206700 chr4A 500138035 500145802 7767 False 14345.000000 14345 100.000000 1 7768 1 chr4A.!!$F1 7767
1 TraesCS4A01G206700 chr4B 123496442 123504581 8139 False 2007.600000 6606 91.835400 59 7623 5 chr4B.!!$F2 7564
2 TraesCS4A01G206700 chr4B 578032133 578033074 941 True 1260.000000 1260 90.583000 3407 4381 1 chr4B.!!$R2 974
3 TraesCS4A01G206700 chr4D 87541149 87548576 7427 False 3413.333333 6403 89.523333 80 7246 3 chr4D.!!$F3 7166
4 TraesCS4A01G206700 chr4D 85992971 86000946 7975 False 1567.666667 6397 89.835833 59 7623 6 chr4D.!!$F2 7564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.179150 GCTGCAGTACGTCAGAGGAG 60.179 60.000 16.64 0.96 32.26 3.69 F
1248 2139 0.178068 GCGGGGTTCTGCAGATTCTA 59.822 55.000 19.04 0.00 44.43 2.10 F
1330 2221 1.069775 TAAGGCGAGGGAGGGTTTTT 58.930 50.000 0.00 0.00 0.00 1.94 F
2514 3612 1.209261 TGGACTGTGTTTGAGTGCTCA 59.791 47.619 0.00 0.00 37.91 4.26 F
2941 4040 1.283905 CTTATTTTGGGACGGAGGGGT 59.716 52.381 0.00 0.00 0.00 4.95 F
3796 5241 2.005451 CAATCACCTGAAGCTTCCTCG 58.995 52.381 23.42 12.68 0.00 4.63 F
4454 5905 1.294659 GCCAGGCACGAGAAGAACAG 61.295 60.000 6.55 0.00 0.00 3.16 F
5589 7040 2.089201 CAGATGCAGACATGGCAAAGA 58.911 47.619 0.00 0.00 45.60 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1606 2691 0.529833 ACTGAGAGATGTCACAGGCG 59.470 55.000 19.01 0.0 43.59 5.52 R
2926 4025 0.043637 ATCTACCCCTCCGTCCCAAA 59.956 55.000 0.00 0.0 0.00 3.28 R
2927 4026 0.043637 AATCTACCCCTCCGTCCCAA 59.956 55.000 0.00 0.0 0.00 4.12 R
3397 4833 1.438651 TTCAGCACGGCATAAGTCAC 58.561 50.000 0.00 0.0 0.00 3.67 R
4454 5905 1.943340 GCATCACGGATTTTCTCCTCC 59.057 52.381 0.00 0.0 42.47 4.30 R
5628 7079 0.963962 AGCTGCCCAATTTCTGTGTG 59.036 50.000 0.00 0.0 0.00 3.82 R
6127 7578 0.678048 CCCTTGTAGCAAGCTCACCC 60.678 60.000 0.00 0.0 0.00 4.61 R
7575 9768 0.107081 TCGCCTTTTCGAAGAACCCA 59.893 50.000 0.00 0.0 45.90 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.154139 TTCAGGCCCACATGTCAGT 58.846 52.632 0.00 0.00 0.00 3.41
19 20 0.250858 TTCAGGCCCACATGTCAGTG 60.251 55.000 0.00 0.00 39.21 3.66
25 26 4.498346 CACATGTCAGTGGCCCAA 57.502 55.556 0.00 0.00 35.88 4.12
26 27 1.959085 CACATGTCAGTGGCCCAAC 59.041 57.895 0.00 0.00 35.88 3.77
27 28 0.538057 CACATGTCAGTGGCCCAACT 60.538 55.000 0.00 0.00 35.88 3.16
29 30 1.604593 ATGTCAGTGGCCCAACTGC 60.605 57.895 16.60 12.53 45.93 4.40
30 31 3.357079 GTCAGTGGCCCAACTGCG 61.357 66.667 16.60 0.00 45.93 5.18
46 47 3.536394 CGCGCTGCAGTACGTCAG 61.536 66.667 16.64 11.50 0.00 3.51
47 48 2.126463 GCGCTGCAGTACGTCAGA 60.126 61.111 16.64 0.00 32.26 3.27
48 49 2.155194 GCGCTGCAGTACGTCAGAG 61.155 63.158 16.64 15.63 34.03 3.35
49 50 1.515088 CGCTGCAGTACGTCAGAGG 60.515 63.158 16.64 7.63 32.26 3.69
50 51 1.883732 GCTGCAGTACGTCAGAGGA 59.116 57.895 16.64 0.00 32.26 3.71
51 52 0.179150 GCTGCAGTACGTCAGAGGAG 60.179 60.000 16.64 0.96 32.26 3.69
52 53 0.179150 CTGCAGTACGTCAGAGGAGC 60.179 60.000 5.25 0.00 32.26 4.70
53 54 1.139947 GCAGTACGTCAGAGGAGCC 59.860 63.158 0.00 0.00 0.00 4.70
54 55 1.316706 GCAGTACGTCAGAGGAGCCT 61.317 60.000 0.00 0.00 0.00 4.58
55 56 0.736053 CAGTACGTCAGAGGAGCCTC 59.264 60.000 8.50 8.50 43.03 4.70
56 57 0.328592 AGTACGTCAGAGGAGCCTCA 59.671 55.000 18.16 0.00 44.99 3.86
57 58 1.064314 AGTACGTCAGAGGAGCCTCAT 60.064 52.381 18.16 0.00 44.99 2.90
70 71 1.685765 CCTCATCCTCCCGTGTGGA 60.686 63.158 0.00 0.00 42.41 4.02
165 166 7.987750 AGCTAGAAAAAGAAAAAGAGTAGGG 57.012 36.000 0.00 0.00 0.00 3.53
213 220 0.819259 TCACAGCACTCCAACAAGGC 60.819 55.000 0.00 0.00 37.29 4.35
226 233 4.347000 TCCAACAAGGCTACAAAGTCTACT 59.653 41.667 0.00 0.00 36.37 2.57
254 261 5.552870 ACAGTAACAGTCTCTGGTCAAAT 57.447 39.130 9.00 0.00 35.51 2.32
267 274 3.659786 TGGTCAAATGTCAGGAAGTACG 58.340 45.455 0.00 0.00 0.00 3.67
268 275 3.070446 TGGTCAAATGTCAGGAAGTACGT 59.930 43.478 0.00 0.00 0.00 3.57
269 276 4.281435 TGGTCAAATGTCAGGAAGTACGTA 59.719 41.667 0.00 0.00 0.00 3.57
270 277 4.624452 GGTCAAATGTCAGGAAGTACGTAC 59.376 45.833 18.10 18.10 0.00 3.67
272 279 3.498927 AATGTCAGGAAGTACGTACGG 57.501 47.619 21.06 8.66 0.00 4.02
273 280 0.523072 TGTCAGGAAGTACGTACGGC 59.477 55.000 21.06 14.80 0.00 5.68
274 281 0.807496 GTCAGGAAGTACGTACGGCT 59.193 55.000 21.06 14.12 0.00 5.52
292 299 4.771684 GCATTTGCAGCGGTACAG 57.228 55.556 0.00 0.00 41.59 2.74
370 794 3.385433 ACCCGTTTAAACCTGGAAAAAGG 59.615 43.478 22.09 9.36 43.57 3.11
372 796 4.099727 CCCGTTTAAACCTGGAAAAAGGAA 59.900 41.667 12.66 0.00 40.02 3.36
377 801 3.452755 AACCTGGAAAAAGGAAAAGCG 57.547 42.857 0.00 0.00 40.02 4.68
386 855 2.781945 AAGGAAAAGCGTTTCTGCAG 57.218 45.000 21.73 7.63 42.45 4.41
387 856 1.680338 AGGAAAAGCGTTTCTGCAGT 58.320 45.000 21.73 2.81 42.45 4.40
413 882 9.388506 TGTGTCAAGTAGTACTAGTAGGATAAC 57.611 37.037 10.68 12.87 0.00 1.89
447 924 9.487442 AGTTGATAGAAGAAGAGTAAGAGGAAT 57.513 33.333 0.00 0.00 0.00 3.01
484 981 2.235898 AGCCTTGAAGTCCATCACTCTC 59.764 50.000 0.00 0.00 32.30 3.20
487 984 3.428725 CCTTGAAGTCCATCACTCTCTCG 60.429 52.174 0.00 0.00 32.30 4.04
520 1029 2.622977 GGAAGAGAGCCAGAGAGGAGAA 60.623 54.545 0.00 0.00 41.22 2.87
543 1052 0.839853 AGGCAAGCAAGGAGAGGAGT 60.840 55.000 0.00 0.00 0.00 3.85
545 1054 0.676151 GCAAGCAAGGAGAGGAGTGG 60.676 60.000 0.00 0.00 0.00 4.00
587 1096 1.275421 GGAAACTGGGGAGGAGGAGG 61.275 65.000 0.00 0.00 0.00 4.30
589 1098 0.252927 AAACTGGGGAGGAGGAGGAG 60.253 60.000 0.00 0.00 0.00 3.69
599 1108 3.288381 AGGAGGAGGAGGCCCAGT 61.288 66.667 0.00 0.00 33.88 4.00
629 1138 3.808728 TGGTGAACTGGTGAGAGAAAAG 58.191 45.455 0.00 0.00 0.00 2.27
638 1147 2.375509 GGTGAGAGAAAAGGGGAAAGGA 59.624 50.000 0.00 0.00 0.00 3.36
639 1148 3.181433 GGTGAGAGAAAAGGGGAAAGGAA 60.181 47.826 0.00 0.00 0.00 3.36
665 1174 4.379302 AGGAAAAGGAGCAGATTTCTGT 57.621 40.909 9.21 0.00 45.45 3.41
739 1248 2.359975 CCCGCCGCTTTTCTTCCT 60.360 61.111 0.00 0.00 0.00 3.36
911 1433 0.738975 GGCCTAGTCCGCCAAAATTC 59.261 55.000 0.00 0.00 46.27 2.17
1103 1986 3.001406 CGTTCCGTCCCCTTCCCT 61.001 66.667 0.00 0.00 0.00 4.20
1123 2014 2.675348 CTCTTTCTTCCAATGGCGTCTC 59.325 50.000 0.00 0.00 0.00 3.36
1221 2112 2.203983 TGCTCCTTCCTCCTGGCA 60.204 61.111 0.00 0.00 0.00 4.92
1248 2139 0.178068 GCGGGGTTCTGCAGATTCTA 59.822 55.000 19.04 0.00 44.43 2.10
1295 2186 5.279206 GGGATTTCGAGCAGATTCTCTATGA 60.279 44.000 0.00 0.00 0.00 2.15
1313 2204 9.031537 TCTCTATGAGATTTAGGTGTTGTGTAA 57.968 33.333 0.00 0.00 33.35 2.41
1330 2221 1.069775 TAAGGCGAGGGAGGGTTTTT 58.930 50.000 0.00 0.00 0.00 1.94
1476 2553 5.348997 GGATTTCTAGACAAGTTTCGACTGG 59.651 44.000 0.00 0.00 0.00 4.00
1556 2641 3.887352 GGGGTGATCCTCCTTTTCTAAC 58.113 50.000 4.44 0.00 35.33 2.34
1606 2691 7.806690 TGTAGTTTTCTGCAGTGAACATATTC 58.193 34.615 25.52 15.59 37.60 1.75
1645 2730 4.030913 AGTTTCTGGGATCCGACTCATTA 58.969 43.478 5.45 0.00 0.00 1.90
1712 2797 3.215151 TGGTATTTGCGGTTGAAAGTCA 58.785 40.909 0.00 0.00 0.00 3.41
1793 2879 7.736447 ACAAATTCTGTTCTTACTCAAGAGG 57.264 36.000 1.73 0.00 41.75 3.69
1917 3011 3.245586 TGCCTTTGGTGGTCTCCAATAAT 60.246 43.478 5.48 0.00 45.30 1.28
2019 3113 2.041265 GAGAGGAGCCCTGGGGAA 59.959 66.667 16.03 0.00 37.50 3.97
2024 3118 2.231380 GGAGCCCTGGGGAAAGTGA 61.231 63.158 16.03 0.00 37.50 3.41
2065 3159 3.869065 TCACATTCTGACCGTTAATCCC 58.131 45.455 0.00 0.00 0.00 3.85
2331 3428 5.084722 CAGATTTGTCGAACATTCAGCTTC 58.915 41.667 0.00 0.00 0.00 3.86
2366 3464 2.771943 TCTGGTGGGACATAATCAGACC 59.228 50.000 0.00 0.00 44.52 3.85
2403 3501 6.462552 TGATGAAAACATTCTCACAAACCA 57.537 33.333 0.00 0.00 0.00 3.67
2514 3612 1.209261 TGGACTGTGTTTGAGTGCTCA 59.791 47.619 0.00 0.00 37.91 4.26
2522 3620 5.761003 TGTGTTTGAGTGCTCATGTTTATG 58.239 37.500 2.47 0.00 39.64 1.90
2525 3623 5.530543 TGTTTGAGTGCTCATGTTTATGTGA 59.469 36.000 2.47 0.00 39.64 3.58
2562 3660 6.209192 TGCAATGTATTTGTCTTCTGAACCAT 59.791 34.615 0.00 0.00 37.65 3.55
2573 3671 5.869888 GTCTTCTGAACCATGGTTACACTAG 59.130 44.000 29.89 20.89 38.60 2.57
2581 3679 6.382919 ACCATGGTTACACTAGTAAATGGT 57.617 37.500 13.00 14.46 46.80 3.55
2646 3744 8.421673 AGTCATACGTTTTTCCTAATTAGAGC 57.578 34.615 14.28 0.00 0.00 4.09
2655 3753 7.513371 TTTTCCTAATTAGAGCAAAAACGGA 57.487 32.000 14.28 0.00 0.00 4.69
2657 3755 6.920569 TCCTAATTAGAGCAAAAACGGATC 57.079 37.500 14.28 0.00 0.00 3.36
2881 3980 8.385491 TCATAGCCATGGTGTTATTATCTTGAT 58.615 33.333 14.67 0.00 32.61 2.57
2904 4003 9.186837 TGATATTATAAGATACTTCCTCCGTCC 57.813 37.037 0.00 0.00 0.00 4.79
2905 4004 6.854091 ATTATAAGATACTTCCTCCGTCCC 57.146 41.667 0.00 0.00 0.00 4.46
2906 4005 2.544844 AAGATACTTCCTCCGTCCCA 57.455 50.000 0.00 0.00 0.00 4.37
2907 4006 2.544844 AGATACTTCCTCCGTCCCAA 57.455 50.000 0.00 0.00 0.00 4.12
2908 4007 2.829023 AGATACTTCCTCCGTCCCAAA 58.171 47.619 0.00 0.00 0.00 3.28
2909 4008 3.178865 AGATACTTCCTCCGTCCCAAAA 58.821 45.455 0.00 0.00 0.00 2.44
2910 4009 3.780850 AGATACTTCCTCCGTCCCAAAAT 59.219 43.478 0.00 0.00 0.00 1.82
2911 4010 4.966805 AGATACTTCCTCCGTCCCAAAATA 59.033 41.667 0.00 0.00 0.00 1.40
2912 4011 5.427481 AGATACTTCCTCCGTCCCAAAATAA 59.573 40.000 0.00 0.00 0.00 1.40
2913 4012 4.376225 ACTTCCTCCGTCCCAAAATAAA 57.624 40.909 0.00 0.00 0.00 1.40
2914 4013 4.930696 ACTTCCTCCGTCCCAAAATAAAT 58.069 39.130 0.00 0.00 0.00 1.40
2915 4014 6.069705 ACTTCCTCCGTCCCAAAATAAATA 57.930 37.500 0.00 0.00 0.00 1.40
2916 4015 6.486941 ACTTCCTCCGTCCCAAAATAAATAA 58.513 36.000 0.00 0.00 0.00 1.40
2917 4016 6.602009 ACTTCCTCCGTCCCAAAATAAATAAG 59.398 38.462 0.00 0.00 0.00 1.73
2918 4017 6.069705 TCCTCCGTCCCAAAATAAATAAGT 57.930 37.500 0.00 0.00 0.00 2.24
2919 4018 5.883673 TCCTCCGTCCCAAAATAAATAAGTG 59.116 40.000 0.00 0.00 0.00 3.16
2920 4019 5.650703 CCTCCGTCCCAAAATAAATAAGTGT 59.349 40.000 0.00 0.00 0.00 3.55
2921 4020 6.183360 CCTCCGTCCCAAAATAAATAAGTGTC 60.183 42.308 0.00 0.00 0.00 3.67
2922 4021 6.478129 TCCGTCCCAAAATAAATAAGTGTCT 58.522 36.000 0.00 0.00 0.00 3.41
2923 4022 6.943718 TCCGTCCCAAAATAAATAAGTGTCTT 59.056 34.615 0.00 0.00 0.00 3.01
2924 4023 8.102047 TCCGTCCCAAAATAAATAAGTGTCTTA 58.898 33.333 0.00 0.00 0.00 2.10
2925 4024 8.899771 CCGTCCCAAAATAAATAAGTGTCTTAT 58.100 33.333 0.00 0.00 0.00 1.73
2935 4034 6.753107 AATAAGTGTCTTATTTTGGGACGG 57.247 37.500 8.40 0.00 33.21 4.79
2936 4035 4.360951 AAGTGTCTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 33.21 4.69
2937 4036 3.939066 AGTGTCTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 33.21 4.63
2938 4037 3.007635 GTGTCTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 33.21 4.30
2939 4038 2.026636 TGTCTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 33.21 4.30
2940 4039 1.562475 TCTTATTTTGGGACGGAGGGG 59.438 52.381 0.00 0.00 0.00 4.79
2941 4040 1.283905 CTTATTTTGGGACGGAGGGGT 59.716 52.381 0.00 0.00 0.00 4.95
2953 4363 4.210331 GACGGAGGGGTAGATTAGTTACA 58.790 47.826 0.00 0.00 0.00 2.41
3308 4735 9.793259 GGAAAACATCTCCAATATATACAGGAA 57.207 33.333 6.48 0.55 32.77 3.36
3346 4775 5.580691 CGCTTGAATACTGAGGTCACAATTA 59.419 40.000 0.00 0.00 0.00 1.40
3359 4795 8.474025 TGAGGTCACAATTAAACTTGTCAAAAT 58.526 29.630 0.00 0.00 37.25 1.82
3397 4833 7.003939 TGAAACGTTTGCATGACTATATCAG 57.996 36.000 20.10 0.00 41.91 2.90
3461 4898 5.071384 TCATGATGGAGCTGAATGTGTAGAT 59.929 40.000 0.00 0.00 0.00 1.98
3671 5114 9.274065 GGCTTTTGTAGACTATTCGTAAATTTG 57.726 33.333 0.00 0.00 0.00 2.32
3709 5152 4.613944 TGCTTTGCAGAAAACATTCTCAG 58.386 39.130 0.00 0.00 33.32 3.35
3796 5241 2.005451 CAATCACCTGAAGCTTCCTCG 58.995 52.381 23.42 12.68 0.00 4.63
3947 5392 7.071069 ACAAATGTAGGAGATGCTGATATGA 57.929 36.000 0.00 0.00 0.00 2.15
4265 5716 7.970384 TGTAGTAACCAGAAATTTAGAATGCG 58.030 34.615 0.00 0.00 0.00 4.73
4454 5905 1.294659 GCCAGGCACGAGAAGAACAG 61.295 60.000 6.55 0.00 0.00 3.16
4883 6334 4.596801 GCATATGCTAGCTATTGACAGC 57.403 45.455 20.64 5.64 38.81 4.40
5006 6457 5.105392 TGTTGAAATTGGCCTAATGGATGAC 60.105 40.000 3.32 0.78 34.57 3.06
5410 6861 2.483491 CAGAAGTTGAGAAGCTTCAGGC 59.517 50.000 27.57 16.40 42.42 4.85
5527 6978 2.409870 CGGTGGCATCCTTGGAAGC 61.410 63.158 8.21 8.21 0.00 3.86
5589 7040 2.089201 CAGATGCAGACATGGCAAAGA 58.911 47.619 0.00 0.00 45.60 2.52
5660 7111 4.357918 TGGGCAGCTAAGAGGAATTATC 57.642 45.455 0.00 0.00 0.00 1.75
5684 7135 2.360138 ACTGGAGAGTGAGGTGCAG 58.640 57.895 0.00 0.00 38.06 4.41
5769 7220 3.888930 GAGAACATTTTTGGTGGAGTCCA 59.111 43.478 8.12 8.12 35.49 4.02
5837 7288 2.247311 CAAAGCTGCATGTAACGGTC 57.753 50.000 1.02 0.00 0.00 4.79
5891 7342 4.660771 AGGGAATATTCTTCGGAGGTCAAT 59.339 41.667 14.95 0.00 0.00 2.57
6206 7657 1.129064 GCAAAATGCCGCAAATTGGAG 59.871 47.619 18.01 5.14 37.42 3.86
6291 7742 3.253432 CCTGAAGTTCAAGCAGGTAAACC 59.747 47.826 7.06 0.00 43.25 3.27
6316 7767 2.949447 AGAAGTTGACAACATTGGGCT 58.051 42.857 20.08 5.22 0.00 5.19
6336 7787 4.340097 GGCTAAAATAACATGGGTGGTACC 59.660 45.833 4.43 4.43 37.60 3.34
6342 7801 1.893315 ACATGGGTGGTACCTGCTAT 58.107 50.000 14.36 0.01 38.64 2.97
6405 7866 7.657761 GTCTAATCACTCCTGAAACTTGAGAAA 59.342 37.037 0.00 0.00 0.00 2.52
6521 7985 0.615331 TCGGGCTTCAGCTGAAATCT 59.385 50.000 28.16 0.00 41.70 2.40
6662 8126 3.210012 AATGAGCAACGGGGGCTGT 62.210 57.895 2.37 0.00 42.78 4.40
6743 8207 0.592148 GTCGATCGGTAGCTACAGGG 59.408 60.000 24.75 13.33 0.00 4.45
6762 8226 1.676384 GCAGAGCAAGGGAGTGAGT 59.324 57.895 0.00 0.00 0.00 3.41
6763 8227 0.390998 GCAGAGCAAGGGAGTGAGTC 60.391 60.000 0.00 0.00 0.00 3.36
6827 8291 3.214328 GTTCCTGGATGTTGTTGTCAGT 58.786 45.455 0.00 0.00 0.00 3.41
6829 8293 3.213506 TCCTGGATGTTGTTGTCAGTTG 58.786 45.455 0.00 0.00 0.00 3.16
6830 8294 2.951642 CCTGGATGTTGTTGTCAGTTGT 59.048 45.455 0.00 0.00 0.00 3.32
6921 8389 2.234300 TTTTCGGTCCTGTCTGTCAC 57.766 50.000 0.00 0.00 0.00 3.67
6981 8452 6.996282 AGTGTACTTGCACTAAAATGTTACCT 59.004 34.615 0.00 0.00 46.68 3.08
7107 8595 5.333111 GCACGCCGGTATTATTAGAGAAAAG 60.333 44.000 1.90 0.00 0.00 2.27
7111 8599 7.597743 ACGCCGGTATTATTAGAGAAAAGTATG 59.402 37.037 1.90 0.00 0.00 2.39
7112 8600 7.597743 CGCCGGTATTATTAGAGAAAAGTATGT 59.402 37.037 1.90 0.00 0.00 2.29
7149 8638 3.687572 AATCGCAGATCAATTGAGTGC 57.312 42.857 25.46 25.46 45.12 4.40
7150 8639 2.391616 TCGCAGATCAATTGAGTGCT 57.608 45.000 29.15 18.06 36.40 4.40
7151 8640 3.525268 TCGCAGATCAATTGAGTGCTA 57.475 42.857 29.15 21.68 36.40 3.49
7152 8641 3.190079 TCGCAGATCAATTGAGTGCTAC 58.810 45.455 29.15 15.42 36.40 3.58
7153 8642 3.118992 TCGCAGATCAATTGAGTGCTACT 60.119 43.478 29.15 14.16 36.40 2.57
7155 8644 4.440880 GCAGATCAATTGAGTGCTACTCT 58.559 43.478 26.96 15.71 45.27 3.24
7156 8645 5.595885 GCAGATCAATTGAGTGCTACTCTA 58.404 41.667 26.96 9.37 45.27 2.43
7157 8646 5.461737 GCAGATCAATTGAGTGCTACTCTAC 59.538 44.000 26.96 11.17 45.27 2.59
7159 8648 6.475076 CAGATCAATTGAGTGCTACTCTACAC 59.525 42.308 14.54 0.00 45.27 2.90
7161 8650 4.457949 TCAATTGAGTGCTACTCTACACGA 59.542 41.667 3.38 5.34 45.27 4.35
7162 8651 5.125578 TCAATTGAGTGCTACTCTACACGAT 59.874 40.000 3.38 0.00 45.27 3.73
7163 8652 6.317893 TCAATTGAGTGCTACTCTACACGATA 59.682 38.462 3.38 0.00 45.27 2.92
7164 8653 5.736486 TTGAGTGCTACTCTACACGATAG 57.264 43.478 14.60 0.00 45.27 2.08
7165 8654 5.019785 TGAGTGCTACTCTACACGATAGA 57.980 43.478 14.60 0.00 45.27 1.98
7166 8655 5.612351 TGAGTGCTACTCTACACGATAGAT 58.388 41.667 14.60 0.00 45.27 1.98
7167 8656 5.697178 TGAGTGCTACTCTACACGATAGATC 59.303 44.000 14.60 0.00 45.27 2.75
7168 8657 5.860611 AGTGCTACTCTACACGATAGATCT 58.139 41.667 0.00 0.00 41.72 2.75
7169 8658 5.699001 AGTGCTACTCTACACGATAGATCTG 59.301 44.000 5.18 0.00 41.72 2.90
7170 8659 5.467399 GTGCTACTCTACACGATAGATCTGT 59.533 44.000 5.18 0.00 41.38 3.41
7171 8660 6.645827 GTGCTACTCTACACGATAGATCTGTA 59.354 42.308 5.18 0.00 41.38 2.74
7194 8684 6.575162 AGTCCTTATTTCAATGTGTGGAAC 57.425 37.500 0.00 0.00 37.35 3.62
7195 8685 6.306987 AGTCCTTATTTCAATGTGTGGAACT 58.693 36.000 0.00 0.00 38.04 3.01
7239 8729 2.095668 GGAGACGGTAGCATGAGATACG 60.096 54.545 0.00 0.00 37.50 3.06
7258 8748 2.288763 ACGTTCCACAAATTTGGATGGC 60.289 45.455 21.74 8.70 45.42 4.40
7263 8753 6.182105 TTCCACAAATTTGGATGGCGATCC 62.182 45.833 20.10 20.10 45.42 3.36
7283 8773 7.516785 GCGATCCTGTAAATGTGTGTAGTTATG 60.517 40.741 0.00 0.00 0.00 1.90
7323 8814 5.384336 TGGTTTGTGATTTTCATCTCCTCA 58.616 37.500 0.00 0.00 0.00 3.86
7324 8815 6.012113 TGGTTTGTGATTTTCATCTCCTCAT 58.988 36.000 0.00 0.00 0.00 2.90
7344 8835 4.035091 TCATGTGTTCTCAACCTCGTTTTG 59.965 41.667 0.00 0.00 0.00 2.44
7348 8839 5.411977 TGTGTTCTCAACCTCGTTTTGTAAA 59.588 36.000 0.00 0.00 0.00 2.01
7393 8884 3.013219 TGCAGCTGAAAGTTTACACACA 58.987 40.909 20.43 0.00 35.30 3.72
7413 8904 7.224557 ACACACAGATTAATTTCTTTGCCAAAC 59.775 33.333 0.00 0.00 28.49 2.93
7419 8910 7.595130 AGATTAATTTCTTTGCCAAACGTTCTC 59.405 33.333 0.00 0.00 0.00 2.87
7421 8912 0.941542 TCTTTGCCAAACGTTCTCCG 59.058 50.000 0.00 0.00 44.03 4.63
7438 9631 1.017387 CCGTAGCCATCTTTGGAAGC 58.983 55.000 0.00 0.00 46.92 3.86
7441 9634 1.666189 GTAGCCATCTTTGGAAGCGAC 59.334 52.381 0.00 0.00 46.92 5.19
7502 9695 7.038729 TCCTCACAACTTCTAAGATGATCAACT 60.039 37.037 0.00 0.00 33.55 3.16
7505 9698 8.585018 TCACAACTTCTAAGATGATCAACTACA 58.415 33.333 5.85 0.00 33.55 2.74
7551 9744 3.306641 GGTGACATCCAGCCTCTATCATC 60.307 52.174 0.00 0.00 37.30 2.92
7552 9745 3.323115 GTGACATCCAGCCTCTATCATCA 59.677 47.826 0.00 0.00 0.00 3.07
7571 9764 0.604243 ATGGCGCACTTCACCGTTTA 60.604 50.000 10.83 0.00 0.00 2.01
7575 9768 1.069500 GCGCACTTCACCGTTTACATT 60.069 47.619 0.30 0.00 0.00 2.71
7576 9769 2.570169 CGCACTTCACCGTTTACATTG 58.430 47.619 0.00 0.00 0.00 2.82
7602 9795 0.606096 TCGAAAAGGCGATGACCTCA 59.394 50.000 0.00 0.00 39.93 3.86
7623 9816 2.551006 GCCATTGTGACGCACACCA 61.551 57.895 11.39 1.51 44.47 4.17
7624 9817 1.282570 CCATTGTGACGCACACCAC 59.717 57.895 11.39 0.00 44.47 4.16
7625 9818 1.282570 CATTGTGACGCACACCACC 59.717 57.895 11.39 0.00 44.47 4.61
7626 9819 1.153066 ATTGTGACGCACACCACCA 60.153 52.632 11.39 0.00 44.47 4.17
7627 9820 1.444119 ATTGTGACGCACACCACCAC 61.444 55.000 11.39 0.00 44.47 4.16
7628 9821 3.276846 GTGACGCACACCACCACC 61.277 66.667 5.30 0.00 43.05 4.61
7629 9822 4.901123 TGACGCACACCACCACCG 62.901 66.667 0.00 0.00 0.00 4.94
7630 9823 4.903010 GACGCACACCACCACCGT 62.903 66.667 0.00 0.00 34.52 4.83
7631 9824 4.476752 ACGCACACCACCACCGTT 62.477 61.111 0.00 0.00 0.00 4.44
7632 9825 3.645975 CGCACACCACCACCGTTC 61.646 66.667 0.00 0.00 0.00 3.95
7633 9826 2.203153 GCACACCACCACCGTTCT 60.203 61.111 0.00 0.00 0.00 3.01
7634 9827 1.822186 GCACACCACCACCGTTCTT 60.822 57.895 0.00 0.00 0.00 2.52
7635 9828 2.021722 CACACCACCACCGTTCTTG 58.978 57.895 0.00 0.00 0.00 3.02
7636 9829 1.153046 ACACCACCACCGTTCTTGG 60.153 57.895 0.00 0.00 40.32 3.61
7637 9830 1.896660 CACCACCACCGTTCTTGGG 60.897 63.158 0.00 0.00 38.59 4.12
7638 9831 2.380285 ACCACCACCGTTCTTGGGT 61.380 57.895 0.00 0.00 38.59 4.51
7639 9832 1.152839 CCACCACCGTTCTTGGGTT 60.153 57.895 0.00 0.00 38.59 4.11
7640 9833 0.753848 CCACCACCGTTCTTGGGTTT 60.754 55.000 0.00 0.00 38.59 3.27
7641 9834 0.666374 CACCACCGTTCTTGGGTTTC 59.334 55.000 0.00 0.00 38.59 2.78
7642 9835 0.256464 ACCACCGTTCTTGGGTTTCA 59.744 50.000 0.00 0.00 38.59 2.69
7643 9836 1.133606 ACCACCGTTCTTGGGTTTCAT 60.134 47.619 0.00 0.00 38.59 2.57
7644 9837 1.960689 CCACCGTTCTTGGGTTTCATT 59.039 47.619 0.00 0.00 34.97 2.57
7645 9838 2.030274 CCACCGTTCTTGGGTTTCATTC 60.030 50.000 0.00 0.00 34.97 2.67
7646 9839 1.877443 ACCGTTCTTGGGTTTCATTCG 59.123 47.619 0.00 0.00 32.70 3.34
7647 9840 2.147958 CCGTTCTTGGGTTTCATTCGA 58.852 47.619 0.00 0.00 0.00 3.71
7648 9841 2.747446 CCGTTCTTGGGTTTCATTCGAT 59.253 45.455 0.00 0.00 0.00 3.59
7649 9842 3.181510 CCGTTCTTGGGTTTCATTCGATC 60.182 47.826 0.00 0.00 0.00 3.69
7650 9843 3.181510 CGTTCTTGGGTTTCATTCGATCC 60.182 47.826 0.00 0.00 0.00 3.36
7651 9844 3.712016 TCTTGGGTTTCATTCGATCCA 57.288 42.857 0.00 0.00 0.00 3.41
7652 9845 4.027674 TCTTGGGTTTCATTCGATCCAA 57.972 40.909 0.00 0.00 33.80 3.53
7653 9846 4.599041 TCTTGGGTTTCATTCGATCCAAT 58.401 39.130 0.00 0.00 34.33 3.16
7654 9847 4.640201 TCTTGGGTTTCATTCGATCCAATC 59.360 41.667 0.00 0.00 34.33 2.67
7670 9863 4.388189 CCAATCGTTGGTTTGATTTTGC 57.612 40.909 8.17 0.00 45.93 3.68
7671 9864 3.186205 CCAATCGTTGGTTTGATTTTGCC 59.814 43.478 8.17 0.00 45.93 4.52
7672 9865 4.057432 CAATCGTTGGTTTGATTTTGCCT 58.943 39.130 0.00 0.00 32.68 4.75
7673 9866 3.363341 TCGTTGGTTTGATTTTGCCTC 57.637 42.857 0.00 0.00 0.00 4.70
7674 9867 2.955660 TCGTTGGTTTGATTTTGCCTCT 59.044 40.909 0.00 0.00 0.00 3.69
7675 9868 3.004315 TCGTTGGTTTGATTTTGCCTCTC 59.996 43.478 0.00 0.00 0.00 3.20
7676 9869 3.308530 GTTGGTTTGATTTTGCCTCTCG 58.691 45.455 0.00 0.00 0.00 4.04
7677 9870 2.582052 TGGTTTGATTTTGCCTCTCGT 58.418 42.857 0.00 0.00 0.00 4.18
7678 9871 2.955660 TGGTTTGATTTTGCCTCTCGTT 59.044 40.909 0.00 0.00 0.00 3.85
7679 9872 3.004315 TGGTTTGATTTTGCCTCTCGTTC 59.996 43.478 0.00 0.00 0.00 3.95
7680 9873 3.253432 GGTTTGATTTTGCCTCTCGTTCT 59.747 43.478 0.00 0.00 0.00 3.01
7681 9874 4.222114 GTTTGATTTTGCCTCTCGTTCTG 58.778 43.478 0.00 0.00 0.00 3.02
7682 9875 1.806542 TGATTTTGCCTCTCGTTCTGC 59.193 47.619 0.00 0.00 0.00 4.26
7683 9876 2.079925 GATTTTGCCTCTCGTTCTGCT 58.920 47.619 0.00 0.00 0.00 4.24
7684 9877 1.229428 TTTTGCCTCTCGTTCTGCTG 58.771 50.000 0.00 0.00 0.00 4.41
7685 9878 0.106708 TTTGCCTCTCGTTCTGCTGT 59.893 50.000 0.00 0.00 0.00 4.40
7686 9879 0.106708 TTGCCTCTCGTTCTGCTGTT 59.893 50.000 0.00 0.00 0.00 3.16
7687 9880 0.106708 TGCCTCTCGTTCTGCTGTTT 59.893 50.000 0.00 0.00 0.00 2.83
7688 9881 0.793250 GCCTCTCGTTCTGCTGTTTC 59.207 55.000 0.00 0.00 0.00 2.78
7689 9882 1.606737 GCCTCTCGTTCTGCTGTTTCT 60.607 52.381 0.00 0.00 0.00 2.52
7690 9883 2.760374 CCTCTCGTTCTGCTGTTTCTT 58.240 47.619 0.00 0.00 0.00 2.52
7691 9884 2.478134 CCTCTCGTTCTGCTGTTTCTTG 59.522 50.000 0.00 0.00 0.00 3.02
7692 9885 2.478134 CTCTCGTTCTGCTGTTTCTTGG 59.522 50.000 0.00 0.00 0.00 3.61
7693 9886 2.158957 TCTCGTTCTGCTGTTTCTTGGT 60.159 45.455 0.00 0.00 0.00 3.67
7694 9887 1.939934 TCGTTCTGCTGTTTCTTGGTG 59.060 47.619 0.00 0.00 0.00 4.17
7695 9888 1.670811 CGTTCTGCTGTTTCTTGGTGT 59.329 47.619 0.00 0.00 0.00 4.16
7696 9889 2.097466 CGTTCTGCTGTTTCTTGGTGTT 59.903 45.455 0.00 0.00 0.00 3.32
7697 9890 3.427503 CGTTCTGCTGTTTCTTGGTGTTT 60.428 43.478 0.00 0.00 0.00 2.83
7698 9891 3.781079 TCTGCTGTTTCTTGGTGTTTG 57.219 42.857 0.00 0.00 0.00 2.93
7699 9892 2.426738 TCTGCTGTTTCTTGGTGTTTGG 59.573 45.455 0.00 0.00 0.00 3.28
7700 9893 1.480137 TGCTGTTTCTTGGTGTTTGGG 59.520 47.619 0.00 0.00 0.00 4.12
7701 9894 1.480545 GCTGTTTCTTGGTGTTTGGGT 59.519 47.619 0.00 0.00 0.00 4.51
7702 9895 2.738321 GCTGTTTCTTGGTGTTTGGGTG 60.738 50.000 0.00 0.00 0.00 4.61
7703 9896 2.495669 CTGTTTCTTGGTGTTTGGGTGT 59.504 45.455 0.00 0.00 0.00 4.16
7704 9897 2.900546 TGTTTCTTGGTGTTTGGGTGTT 59.099 40.909 0.00 0.00 0.00 3.32
7705 9898 3.056465 TGTTTCTTGGTGTTTGGGTGTTC 60.056 43.478 0.00 0.00 0.00 3.18
7706 9899 2.516227 TCTTGGTGTTTGGGTGTTCA 57.484 45.000 0.00 0.00 0.00 3.18
7707 9900 3.025322 TCTTGGTGTTTGGGTGTTCAT 57.975 42.857 0.00 0.00 0.00 2.57
7708 9901 3.370104 TCTTGGTGTTTGGGTGTTCATT 58.630 40.909 0.00 0.00 0.00 2.57
7709 9902 3.131933 TCTTGGTGTTTGGGTGTTCATTG 59.868 43.478 0.00 0.00 0.00 2.82
7710 9903 1.759445 TGGTGTTTGGGTGTTCATTGG 59.241 47.619 0.00 0.00 0.00 3.16
7711 9904 1.760029 GGTGTTTGGGTGTTCATTGGT 59.240 47.619 0.00 0.00 0.00 3.67
7712 9905 2.169561 GGTGTTTGGGTGTTCATTGGTT 59.830 45.455 0.00 0.00 0.00 3.67
7713 9906 3.194062 GTGTTTGGGTGTTCATTGGTTG 58.806 45.455 0.00 0.00 0.00 3.77
7714 9907 2.209273 GTTTGGGTGTTCATTGGTTGC 58.791 47.619 0.00 0.00 0.00 4.17
7715 9908 1.786937 TTGGGTGTTCATTGGTTGCT 58.213 45.000 0.00 0.00 0.00 3.91
7716 9909 1.039068 TGGGTGTTCATTGGTTGCTG 58.961 50.000 0.00 0.00 0.00 4.41
7717 9910 0.319813 GGGTGTTCATTGGTTGCTGC 60.320 55.000 0.00 0.00 0.00 5.25
7718 9911 0.388659 GGTGTTCATTGGTTGCTGCA 59.611 50.000 0.00 0.00 0.00 4.41
7719 9912 1.603678 GGTGTTCATTGGTTGCTGCAG 60.604 52.381 10.11 10.11 0.00 4.41
7720 9913 1.337703 GTGTTCATTGGTTGCTGCAGA 59.662 47.619 20.43 0.00 0.00 4.26
7721 9914 2.029649 GTGTTCATTGGTTGCTGCAGAT 60.030 45.455 20.43 0.00 0.00 2.90
7722 9915 2.029739 TGTTCATTGGTTGCTGCAGATG 60.030 45.455 20.43 11.21 0.00 2.90
7723 9916 0.528924 TCATTGGTTGCTGCAGATGC 59.471 50.000 20.43 3.09 42.50 3.91
7733 9926 4.192000 GCAGATGCACACGCTACT 57.808 55.556 0.00 0.00 41.59 2.57
7734 9927 2.460330 GCAGATGCACACGCTACTT 58.540 52.632 0.00 0.00 41.59 2.24
7735 9928 0.095935 GCAGATGCACACGCTACTTG 59.904 55.000 0.00 0.00 41.59 3.16
7736 9929 0.095935 CAGATGCACACGCTACTTGC 59.904 55.000 0.00 0.00 39.64 4.01
7738 9931 4.132999 TGCACACGCTACTTGCAA 57.867 50.000 0.00 0.00 43.16 4.08
7739 9932 2.398803 TGCACACGCTACTTGCAAA 58.601 47.368 0.00 0.00 43.16 3.68
7740 9933 0.735471 TGCACACGCTACTTGCAAAA 59.265 45.000 0.00 0.00 43.16 2.44
7741 9934 1.268488 TGCACACGCTACTTGCAAAAG 60.268 47.619 0.00 2.13 43.16 2.27
7742 9935 1.268539 GCACACGCTACTTGCAAAAGT 60.269 47.619 0.00 0.00 43.06 2.66
7743 9936 2.032377 GCACACGCTACTTGCAAAAGTA 60.032 45.455 0.00 0.00 43.06 2.24
7744 9937 3.547214 GCACACGCTACTTGCAAAAGTAA 60.547 43.478 0.00 0.00 43.06 2.24
7745 9938 4.211389 CACACGCTACTTGCAAAAGTAAG 58.789 43.478 0.00 0.38 43.06 2.34
7746 9939 4.025229 CACACGCTACTTGCAAAAGTAAGA 60.025 41.667 0.00 0.00 43.06 2.10
7747 9940 4.025145 ACACGCTACTTGCAAAAGTAAGAC 60.025 41.667 0.00 0.00 43.06 3.01
7748 9941 3.497262 ACGCTACTTGCAAAAGTAAGACC 59.503 43.478 0.00 0.00 43.06 3.85
7749 9942 3.496884 CGCTACTTGCAAAAGTAAGACCA 59.503 43.478 0.00 0.00 43.06 4.02
7750 9943 4.610680 CGCTACTTGCAAAAGTAAGACCAC 60.611 45.833 0.00 0.00 43.06 4.16
7751 9944 4.274950 GCTACTTGCAAAAGTAAGACCACA 59.725 41.667 0.00 0.00 42.31 4.17
7752 9945 5.220970 GCTACTTGCAAAAGTAAGACCACAA 60.221 40.000 0.00 0.00 42.31 3.33
7753 9946 5.852282 ACTTGCAAAAGTAAGACCACAAT 57.148 34.783 0.00 0.00 0.00 2.71
7754 9947 6.220726 ACTTGCAAAAGTAAGACCACAATT 57.779 33.333 0.00 0.00 0.00 2.32
7755 9948 7.341445 ACTTGCAAAAGTAAGACCACAATTA 57.659 32.000 0.00 0.00 0.00 1.40
7756 9949 7.200455 ACTTGCAAAAGTAAGACCACAATTAC 58.800 34.615 0.00 0.00 33.06 1.89
7757 9950 5.753744 TGCAAAAGTAAGACCACAATTACG 58.246 37.500 0.00 0.00 37.06 3.18
7758 9951 5.151389 GCAAAAGTAAGACCACAATTACGG 58.849 41.667 0.00 0.00 37.06 4.02
7759 9952 5.278120 GCAAAAGTAAGACCACAATTACGGT 60.278 40.000 0.00 0.00 37.06 4.83
7760 9953 5.934935 AAAGTAAGACCACAATTACGGTG 57.065 39.130 2.77 0.00 37.06 4.94
7761 9954 3.332034 AGTAAGACCACAATTACGGTGC 58.668 45.455 2.77 0.00 37.06 5.01
7762 9955 1.530323 AAGACCACAATTACGGTGCC 58.470 50.000 2.77 0.00 34.99 5.01
7763 9956 0.322187 AGACCACAATTACGGTGCCC 60.322 55.000 2.77 0.00 34.99 5.36
7764 9957 0.322187 GACCACAATTACGGTGCCCT 60.322 55.000 2.77 0.00 34.99 5.19
7765 9958 0.111639 ACCACAATTACGGTGCCCTT 59.888 50.000 0.00 0.00 34.94 3.95
7766 9959 1.253100 CCACAATTACGGTGCCCTTT 58.747 50.000 0.00 0.00 34.94 3.11
7767 9960 1.616374 CCACAATTACGGTGCCCTTTT 59.384 47.619 0.00 0.00 34.94 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.250858 CACTGACATGTGGGCCTGAA 60.251 55.000 1.15 0.00 34.56 3.02
1 2 1.376086 CACTGACATGTGGGCCTGA 59.624 57.895 1.15 0.00 34.56 3.86
2 3 3.991999 CACTGACATGTGGGCCTG 58.008 61.111 1.15 0.00 34.56 4.85
8 9 0.538057 AGTTGGGCCACTGACATGTG 60.538 55.000 5.23 0.00 37.66 3.21
9 10 0.538057 CAGTTGGGCCACTGACATGT 60.538 55.000 23.45 0.00 46.29 3.21
10 11 1.870055 GCAGTTGGGCCACTGACATG 61.870 60.000 28.71 16.31 46.29 3.21
11 12 1.604593 GCAGTTGGGCCACTGACAT 60.605 57.895 28.71 6.63 46.29 3.06
12 13 2.203337 GCAGTTGGGCCACTGACA 60.203 61.111 28.71 5.60 46.29 3.58
13 14 3.357079 CGCAGTTGGGCCACTGAC 61.357 66.667 28.71 17.09 46.29 3.51
29 30 3.536394 CTGACGTACTGCAGCGCG 61.536 66.667 23.21 23.21 0.00 6.86
30 31 2.126463 TCTGACGTACTGCAGCGC 60.126 61.111 15.27 0.00 32.27 5.92
31 32 1.515088 CCTCTGACGTACTGCAGCG 60.515 63.158 15.27 13.10 32.27 5.18
32 33 0.179150 CTCCTCTGACGTACTGCAGC 60.179 60.000 15.27 0.00 32.27 5.25
33 34 0.179150 GCTCCTCTGACGTACTGCAG 60.179 60.000 13.48 13.48 0.00 4.41
34 35 1.595993 GGCTCCTCTGACGTACTGCA 61.596 60.000 0.00 0.00 0.00 4.41
35 36 1.139947 GGCTCCTCTGACGTACTGC 59.860 63.158 0.00 0.00 0.00 4.40
36 37 0.736053 GAGGCTCCTCTGACGTACTG 59.264 60.000 2.15 0.00 39.80 2.74
37 38 0.328592 TGAGGCTCCTCTGACGTACT 59.671 55.000 12.86 0.00 43.12 2.73
38 39 1.335496 GATGAGGCTCCTCTGACGTAC 59.665 57.143 12.86 0.00 43.12 3.67
39 40 1.681538 GATGAGGCTCCTCTGACGTA 58.318 55.000 12.86 0.00 43.12 3.57
40 41 1.040339 GGATGAGGCTCCTCTGACGT 61.040 60.000 17.55 0.00 43.12 4.34
41 42 0.754957 AGGATGAGGCTCCTCTGACG 60.755 60.000 17.55 0.00 42.12 4.35
42 43 3.222287 AGGATGAGGCTCCTCTGAC 57.778 57.895 17.55 6.80 42.12 3.51
48 49 2.444895 ACGGGAGGATGAGGCTCC 60.445 66.667 12.86 0.00 36.58 4.70
49 50 2.060980 ACACGGGAGGATGAGGCTC 61.061 63.158 7.79 7.79 0.00 4.70
50 51 2.039624 ACACGGGAGGATGAGGCT 59.960 61.111 0.00 0.00 0.00 4.58
51 52 2.187946 CACACGGGAGGATGAGGC 59.812 66.667 0.00 0.00 0.00 4.70
52 53 1.685765 TCCACACGGGAGGATGAGG 60.686 63.158 0.00 0.00 42.15 3.86
53 54 4.034246 TCCACACGGGAGGATGAG 57.966 61.111 0.00 0.00 42.15 2.90
70 71 0.541863 CTCTTCCAATACCGTGGCCT 59.458 55.000 3.32 0.00 38.68 5.19
77 78 8.710835 TTTTTGTTTTTGTCTCTTCCAATACC 57.289 30.769 0.00 0.00 0.00 2.73
178 179 3.588955 CTGTGATGTGCTGCTTGTAGTA 58.411 45.455 0.00 0.00 0.00 1.82
179 180 2.420642 CTGTGATGTGCTGCTTGTAGT 58.579 47.619 0.00 0.00 0.00 2.73
180 181 1.129998 GCTGTGATGTGCTGCTTGTAG 59.870 52.381 0.00 0.00 0.00 2.74
213 220 6.503589 ACTGTAGCAGAGTAGACTTTGTAG 57.496 41.667 2.91 0.40 35.18 2.74
226 233 3.759086 CCAGAGACTGTTACTGTAGCAGA 59.241 47.826 30.24 0.78 39.07 4.26
254 261 0.523072 GCCGTACGTACTTCCTGACA 59.477 55.000 22.55 0.00 0.00 3.58
321 328 2.513435 GCTGCTGCTCCTACTGGC 60.513 66.667 8.53 0.00 36.03 4.85
361 784 4.429108 CAGAAACGCTTTTCCTTTTTCCA 58.571 39.130 11.71 0.00 42.00 3.53
370 794 2.111756 CACACTGCAGAAACGCTTTTC 58.888 47.619 23.35 7.56 41.44 2.29
372 796 1.064060 GACACACTGCAGAAACGCTTT 59.936 47.619 23.35 0.00 0.00 3.51
377 801 3.871594 ACTACTTGACACACTGCAGAAAC 59.128 43.478 23.35 7.40 0.00 2.78
386 855 7.862512 ATCCTACTAGTACTACTTGACACAC 57.137 40.000 0.00 0.00 0.00 3.82
387 856 9.388506 GTTATCCTACTAGTACTACTTGACACA 57.611 37.037 0.00 0.00 0.00 3.72
484 981 0.531532 CTTCCCTATGCCTGCACGAG 60.532 60.000 0.00 0.00 0.00 4.18
487 984 0.833287 TCTCTTCCCTATGCCTGCAC 59.167 55.000 0.00 0.00 0.00 4.57
520 1029 1.767681 CCTCTCCTTGCTTGCCTATCT 59.232 52.381 0.00 0.00 0.00 1.98
599 1108 2.281692 AGTTCACCAGCATGCGCA 60.282 55.556 14.96 14.96 42.27 6.09
665 1174 1.822990 GTGGGAATCGGCGATAGGATA 59.177 52.381 24.28 6.26 0.00 2.59
739 1248 0.322456 CGCAATGTGGAAGGAGGGAA 60.322 55.000 0.00 0.00 0.00 3.97
841 1363 3.310307 ATTGCCCAACCAACCGGC 61.310 61.111 0.00 0.00 43.32 6.13
842 1364 2.656055 CATTGCCCAACCAACCGG 59.344 61.111 0.00 0.00 38.77 5.28
911 1433 1.304134 CCCCTCCCCTCCAAAAACG 60.304 63.158 0.00 0.00 0.00 3.60
976 1858 2.388310 TGAACCGTGTGAACTGTGAA 57.612 45.000 0.00 0.00 0.00 3.18
1103 1986 2.699954 GAGACGCCATTGGAAGAAAGA 58.300 47.619 6.95 0.00 0.00 2.52
1123 2014 4.928615 AGAAGAACTCAATCAAGAAGAGCG 59.071 41.667 0.00 0.00 32.71 5.03
1221 2112 2.603776 AGAACCCCGCCGAAGAGT 60.604 61.111 0.00 0.00 0.00 3.24
1269 2160 3.129871 GAGAATCTGCTCGAAATCCCAG 58.870 50.000 0.00 0.00 0.00 4.45
1295 2186 4.000988 CGCCTTACACAACACCTAAATCT 58.999 43.478 0.00 0.00 0.00 2.40
1313 2204 3.589139 AAAAACCCTCCCTCGCCT 58.411 55.556 0.00 0.00 0.00 5.52
1330 2221 0.602638 AAGTCGATTGCAGCACGGAA 60.603 50.000 0.00 0.00 0.00 4.30
1505 2585 8.102047 CCTCTCTGCATAGAAATCCAAATCTAT 58.898 37.037 3.16 0.00 38.98 1.98
1506 2586 7.448420 CCTCTCTGCATAGAAATCCAAATCTA 58.552 38.462 3.16 0.00 31.21 1.98
1507 2587 6.297582 CCTCTCTGCATAGAAATCCAAATCT 58.702 40.000 3.16 0.00 31.21 2.40
1556 2641 3.633986 GCCACTATCCTCCAAATCCTTTG 59.366 47.826 0.00 0.00 40.32 2.77
1606 2691 0.529833 ACTGAGAGATGTCACAGGCG 59.470 55.000 19.01 0.00 43.59 5.52
1701 2786 5.462068 GCAAAATAACACCTGACTTTCAACC 59.538 40.000 0.00 0.00 0.00 3.77
1712 2797 4.578928 CCCGCTTATAGCAAAATAACACCT 59.421 41.667 0.00 0.00 42.58 4.00
1793 2879 5.505159 GCGTACCAGGCACTAAAAATAATCC 60.505 44.000 0.00 0.00 36.02 3.01
1917 3011 0.761323 TCCACAGTCGTTCCCTTGGA 60.761 55.000 0.00 0.00 0.00 3.53
2019 3113 5.041191 ACACCAAACTGAAGATCTCACTT 57.959 39.130 0.00 0.00 0.00 3.16
2024 3118 4.999950 GTGATGACACCAAACTGAAGATCT 59.000 41.667 0.00 0.00 40.74 2.75
2065 3159 2.743928 GAGCAGAACCTGGCCACG 60.744 66.667 0.00 0.00 31.21 4.94
2317 3414 4.214437 GTTGAAGTGAAGCTGAATGTTCG 58.786 43.478 0.00 0.00 0.00 3.95
2331 3428 2.358898 CCACCAGAAACAGGTTGAAGTG 59.641 50.000 0.00 0.00 37.23 3.16
2403 3501 7.809806 GCAATTTAGCATGAAACTTGTAAGTCT 59.190 33.333 0.00 0.00 38.57 3.24
2514 3612 8.584157 TGCAACCTTCTAAAATCACATAAACAT 58.416 29.630 0.00 0.00 0.00 2.71
2522 3620 8.986477 AATACATTGCAACCTTCTAAAATCAC 57.014 30.769 0.00 0.00 0.00 3.06
2525 3623 9.423061 GACAAATACATTGCAACCTTCTAAAAT 57.577 29.630 0.00 0.00 43.13 1.82
2562 3660 5.230323 TGCACCATTTACTAGTGTAACCA 57.770 39.130 5.39 0.00 38.26 3.67
2573 3671 6.920758 CACTCTCTACTAGATGCACCATTTAC 59.079 42.308 0.00 0.00 32.41 2.01
2581 3679 7.063593 AGAATTACCACTCTCTACTAGATGCA 58.936 38.462 0.00 0.00 32.41 3.96
2646 3744 1.604755 TCAACCCACGATCCGTTTTTG 59.395 47.619 0.00 0.00 38.32 2.44
2694 3792 6.770286 ATCTATCTCATACCAAACCCATGT 57.230 37.500 0.00 0.00 0.00 3.21
2699 3797 9.708092 GGTAACTAATCTATCTCATACCAAACC 57.292 37.037 0.00 0.00 33.42 3.27
2881 3980 7.472741 TGGGACGGAGGAAGTATCTTATAATA 58.527 38.462 0.00 0.00 0.00 0.98
2892 3991 4.376225 TTTATTTTGGGACGGAGGAAGT 57.624 40.909 0.00 0.00 0.00 3.01
2893 3992 6.602009 ACTTATTTATTTTGGGACGGAGGAAG 59.398 38.462 0.00 0.00 0.00 3.46
2894 3993 6.376018 CACTTATTTATTTTGGGACGGAGGAA 59.624 38.462 0.00 0.00 0.00 3.36
2895 3994 5.883673 CACTTATTTATTTTGGGACGGAGGA 59.116 40.000 0.00 0.00 0.00 3.71
2896 3995 5.650703 ACACTTATTTATTTTGGGACGGAGG 59.349 40.000 0.00 0.00 0.00 4.30
2897 3996 6.598064 AGACACTTATTTATTTTGGGACGGAG 59.402 38.462 0.00 0.00 0.00 4.63
2898 3997 6.478129 AGACACTTATTTATTTTGGGACGGA 58.522 36.000 0.00 0.00 0.00 4.69
2899 3998 6.753107 AGACACTTATTTATTTTGGGACGG 57.247 37.500 0.00 0.00 0.00 4.79
2909 4008 8.899771 CCGTCCCAAAATAAGACACTTATTTAT 58.100 33.333 21.60 13.32 34.53 1.40
2910 4009 8.102047 TCCGTCCCAAAATAAGACACTTATTTA 58.898 33.333 21.60 9.83 34.53 1.40
2911 4010 6.943718 TCCGTCCCAAAATAAGACACTTATTT 59.056 34.615 17.97 17.97 36.47 1.40
2912 4011 6.478129 TCCGTCCCAAAATAAGACACTTATT 58.522 36.000 9.91 9.91 0.00 1.40
2913 4012 6.057321 TCCGTCCCAAAATAAGACACTTAT 57.943 37.500 0.00 0.00 0.00 1.73
2914 4013 5.484715 CTCCGTCCCAAAATAAGACACTTA 58.515 41.667 0.00 0.00 0.00 2.24
2915 4014 4.324267 CTCCGTCCCAAAATAAGACACTT 58.676 43.478 0.00 0.00 0.00 3.16
2916 4015 3.307480 CCTCCGTCCCAAAATAAGACACT 60.307 47.826 0.00 0.00 0.00 3.55
2917 4016 3.007635 CCTCCGTCCCAAAATAAGACAC 58.992 50.000 0.00 0.00 0.00 3.67
2918 4017 2.026636 CCCTCCGTCCCAAAATAAGACA 60.027 50.000 0.00 0.00 0.00 3.41
2919 4018 2.640184 CCCTCCGTCCCAAAATAAGAC 58.360 52.381 0.00 0.00 0.00 3.01
2920 4019 1.562475 CCCCTCCGTCCCAAAATAAGA 59.438 52.381 0.00 0.00 0.00 2.10
2921 4020 1.283905 ACCCCTCCGTCCCAAAATAAG 59.716 52.381 0.00 0.00 0.00 1.73
2922 4021 1.374572 ACCCCTCCGTCCCAAAATAA 58.625 50.000 0.00 0.00 0.00 1.40
2923 4022 2.121129 CTACCCCTCCGTCCCAAAATA 58.879 52.381 0.00 0.00 0.00 1.40
2924 4023 0.916809 CTACCCCTCCGTCCCAAAAT 59.083 55.000 0.00 0.00 0.00 1.82
2925 4024 0.178897 TCTACCCCTCCGTCCCAAAA 60.179 55.000 0.00 0.00 0.00 2.44
2926 4025 0.043637 ATCTACCCCTCCGTCCCAAA 59.956 55.000 0.00 0.00 0.00 3.28
2927 4026 0.043637 AATCTACCCCTCCGTCCCAA 59.956 55.000 0.00 0.00 0.00 4.12
2928 4027 0.935942 TAATCTACCCCTCCGTCCCA 59.064 55.000 0.00 0.00 0.00 4.37
2929 4028 1.133231 ACTAATCTACCCCTCCGTCCC 60.133 57.143 0.00 0.00 0.00 4.46
2930 4029 2.378378 ACTAATCTACCCCTCCGTCC 57.622 55.000 0.00 0.00 0.00 4.79
2931 4030 4.210331 TGTAACTAATCTACCCCTCCGTC 58.790 47.826 0.00 0.00 0.00 4.79
2932 4031 4.255510 TGTAACTAATCTACCCCTCCGT 57.744 45.455 0.00 0.00 0.00 4.69
2933 4032 5.070047 ACATTGTAACTAATCTACCCCTCCG 59.930 44.000 0.00 0.00 0.00 4.63
2934 4033 6.496144 ACATTGTAACTAATCTACCCCTCC 57.504 41.667 0.00 0.00 0.00 4.30
2935 4034 8.648693 ACATACATTGTAACTAATCTACCCCTC 58.351 37.037 0.00 0.00 36.57 4.30
2936 4035 8.562949 ACATACATTGTAACTAATCTACCCCT 57.437 34.615 0.00 0.00 36.57 4.79
2937 4036 9.623000 AAACATACATTGTAACTAATCTACCCC 57.377 33.333 0.00 0.00 37.68 4.95
3156 4583 8.689251 TCTGTCAGTTCTATGATAAACTTTCG 57.311 34.615 0.00 0.00 33.53 3.46
3234 4661 9.453830 AGGATTCTAACTATCTAGGACCAAAAT 57.546 33.333 0.00 0.00 0.00 1.82
3308 4735 4.688511 TTCAAGCGTAACACAACTTTGT 57.311 36.364 0.00 0.00 43.36 2.83
3359 4795 7.541091 TGCAAACGTTTCAACTAAAACATACAA 59.459 29.630 11.37 0.00 38.73 2.41
3397 4833 1.438651 TTCAGCACGGCATAAGTCAC 58.561 50.000 0.00 0.00 0.00 3.67
3704 5147 3.761218 TGCCAAAAGTGAACAAACTGAGA 59.239 39.130 0.00 0.00 0.00 3.27
3709 5152 6.238076 CCTGTATTTGCCAAAAGTGAACAAAC 60.238 38.462 0.00 0.00 35.08 2.93
3796 5241 4.182339 GGGTTTCACCGTCTCTAATTCTC 58.818 47.826 0.00 0.00 39.83 2.87
3820 5265 6.040729 TCAATGATTTTCCTGCTTCAGTTTCA 59.959 34.615 0.00 0.00 0.00 2.69
3913 5358 4.715297 TCTCCTACATTTGTAAGGACCTCC 59.285 45.833 0.00 0.00 0.00 4.30
3947 5392 8.519799 TCACTTAAACTTTTCACAGAATCCTT 57.480 30.769 0.00 0.00 0.00 3.36
3961 5406 6.066054 GCAGAAAGCTTCTCACTTAAACTT 57.934 37.500 0.00 0.00 38.11 2.66
4244 5695 7.971455 ACTACGCATTCTAAATTTCTGGTTAC 58.029 34.615 0.00 0.00 0.00 2.50
4454 5905 1.943340 GCATCACGGATTTTCTCCTCC 59.057 52.381 0.00 0.00 42.47 4.30
4993 6444 5.431765 TCTCAAGAAAGTCATCCATTAGGC 58.568 41.667 0.00 0.00 33.74 3.93
5006 6457 4.617762 GCCAGCTTTTCCATCTCAAGAAAG 60.618 45.833 0.00 0.00 33.75 2.62
5045 6496 3.560826 GCTAGAGCTCGTGTGATCC 57.439 57.895 8.37 0.00 38.21 3.36
5151 6602 3.784338 TCTTTTCAACCTTTGCTTGCAG 58.216 40.909 0.00 0.00 0.00 4.41
5410 6861 3.743521 TCTTCCAATGAAGTCACCACAG 58.256 45.455 2.56 0.00 46.66 3.66
5527 6978 4.161333 GGTTTTCACTGCATCAATCTTCG 58.839 43.478 0.00 0.00 0.00 3.79
5589 7040 4.277672 TGTCTCTAACGTGTCTTTAGCTGT 59.722 41.667 0.00 0.00 0.00 4.40
5628 7079 0.963962 AGCTGCCCAATTTCTGTGTG 59.036 50.000 0.00 0.00 0.00 3.82
5684 7135 4.821805 TCTTTGTGACACATCTTTCCCTTC 59.178 41.667 9.55 0.00 0.00 3.46
5769 7220 3.840666 TGAGCCTCTAGTGATTCTTTGGT 59.159 43.478 0.00 0.00 0.00 3.67
5837 7288 1.400846 GCATCAGACTCCAGTGCATTG 59.599 52.381 1.49 1.49 35.93 2.82
5891 7342 3.018856 CTCAACTGCCTCCAATTGCATA 58.981 45.455 0.00 0.00 36.79 3.14
5975 7426 2.398588 TCCAGTGACAACACCTTCTCT 58.601 47.619 0.00 0.00 46.99 3.10
6127 7578 0.678048 CCCTTGTAGCAAGCTCACCC 60.678 60.000 0.00 0.00 0.00 4.61
6206 7657 1.376553 GTCCCTTGACAGCTGAGCC 60.377 63.158 23.35 9.57 41.37 4.70
6291 7742 5.691754 GCCCAATGTTGTCAACTTCTAAAAG 59.308 40.000 16.45 0.47 38.54 2.27
6316 7767 4.951094 GCAGGTACCACCCATGTTATTTTA 59.049 41.667 15.94 0.00 39.75 1.52
6336 7787 5.011125 TGCTTAGAACCTAGGCTAATAGCAG 59.989 44.000 18.96 3.68 44.75 4.24
6342 7801 2.770232 GGGTGCTTAGAACCTAGGCTAA 59.230 50.000 9.30 8.59 37.85 3.09
6405 7866 8.833734 AGATGATGATGATTGTTATACAGGGAT 58.166 33.333 0.00 0.00 0.00 3.85
6521 7985 1.754803 ACACTGTCAAGGTTCGTCAGA 59.245 47.619 0.00 0.00 0.00 3.27
6662 8126 4.069232 CGAGGAACAGGCGAGGCA 62.069 66.667 0.00 0.00 0.00 4.75
6743 8207 1.078567 CTCACTCCCTTGCTCTGCC 60.079 63.158 0.00 0.00 0.00 4.85
6762 8226 1.678728 GCACAATCCCTTCCATCACGA 60.679 52.381 0.00 0.00 0.00 4.35
6763 8227 0.734889 GCACAATCCCTTCCATCACG 59.265 55.000 0.00 0.00 0.00 4.35
6921 8389 3.085443 AGCGAAACACCGATCATCTAG 57.915 47.619 0.00 0.00 0.00 2.43
6981 8452 6.361433 TGGTCTTTGTTTTGAGATTGTCCTA 58.639 36.000 0.00 0.00 0.00 2.94
7125 8613 6.039047 AGCACTCAATTGATCTGCGATTTATT 59.961 34.615 22.91 9.10 34.55 1.40
7131 8620 2.391616 AGCACTCAATTGATCTGCGA 57.608 45.000 22.91 0.00 34.55 5.10
7133 8622 4.792528 GAGTAGCACTCAATTGATCTGC 57.207 45.455 22.23 22.23 44.45 4.26
7144 8633 5.929992 AGATCTATCGTGTAGAGTAGCACTC 59.070 44.000 0.00 7.88 45.38 3.51
7145 8634 5.699001 CAGATCTATCGTGTAGAGTAGCACT 59.301 44.000 0.00 0.00 33.78 4.40
7147 8636 5.612351 ACAGATCTATCGTGTAGAGTAGCA 58.388 41.667 0.00 0.00 0.00 3.49
7149 8638 7.543172 GGACTACAGATCTATCGTGTAGAGTAG 59.457 44.444 20.14 13.91 44.32 2.57
7150 8639 7.233144 AGGACTACAGATCTATCGTGTAGAGTA 59.767 40.741 20.14 4.64 44.32 2.59
7151 8640 6.042322 AGGACTACAGATCTATCGTGTAGAGT 59.958 42.308 20.14 6.62 44.32 3.24
7152 8641 6.460781 AGGACTACAGATCTATCGTGTAGAG 58.539 44.000 20.14 4.00 44.32 2.43
7153 8642 6.422344 AGGACTACAGATCTATCGTGTAGA 57.578 41.667 20.14 8.06 44.32 2.59
7155 8644 9.570468 AAATAAGGACTACAGATCTATCGTGTA 57.430 33.333 0.00 0.00 0.00 2.90
7156 8645 8.466617 AAATAAGGACTACAGATCTATCGTGT 57.533 34.615 0.00 0.00 0.00 4.49
7157 8646 8.568794 TGAAATAAGGACTACAGATCTATCGTG 58.431 37.037 0.00 0.00 0.00 4.35
7163 8652 8.543774 ACACATTGAAATAAGGACTACAGATCT 58.456 33.333 0.00 0.00 0.00 2.75
7164 8653 8.607459 CACACATTGAAATAAGGACTACAGATC 58.393 37.037 0.00 0.00 0.00 2.75
7165 8654 7.554118 CCACACATTGAAATAAGGACTACAGAT 59.446 37.037 0.00 0.00 0.00 2.90
7166 8655 6.878923 CCACACATTGAAATAAGGACTACAGA 59.121 38.462 0.00 0.00 0.00 3.41
7167 8656 6.878923 TCCACACATTGAAATAAGGACTACAG 59.121 38.462 0.00 0.00 0.00 2.74
7168 8657 6.774673 TCCACACATTGAAATAAGGACTACA 58.225 36.000 0.00 0.00 0.00 2.74
7169 8658 7.390718 AGTTCCACACATTGAAATAAGGACTAC 59.609 37.037 0.00 0.00 0.00 2.73
7170 8659 7.390440 CAGTTCCACACATTGAAATAAGGACTA 59.610 37.037 0.00 0.00 0.00 2.59
7171 8660 6.207417 CAGTTCCACACATTGAAATAAGGACT 59.793 38.462 0.00 0.00 0.00 3.85
7213 8703 0.752658 CATGCTACCGTCTCCCATCA 59.247 55.000 0.00 0.00 0.00 3.07
7258 8748 7.491372 ACATAACTACACACATTTACAGGATCG 59.509 37.037 0.00 0.00 0.00 3.69
7300 8791 5.384336 TGAGGAGATGAAAATCACAAACCA 58.616 37.500 0.00 0.00 0.00 3.67
7323 8814 3.945285 ACAAAACGAGGTTGAGAACACAT 59.055 39.130 0.00 0.00 0.00 3.21
7324 8815 3.340034 ACAAAACGAGGTTGAGAACACA 58.660 40.909 0.00 0.00 0.00 3.72
7348 8839 8.465201 GCATTCAGAGGAATCATAAGTTTCTTT 58.535 33.333 0.00 0.00 41.78 2.52
7393 8884 7.433680 AGAACGTTTGGCAAAGAAATTAATCT 58.566 30.769 13.94 6.10 0.00 2.40
7413 8904 3.308200 CCAAAGATGGCTACGGAGAACG 61.308 54.545 0.00 0.00 44.26 3.95
7426 8917 1.089920 CCTGGTCGCTTCCAAAGATG 58.910 55.000 0.00 0.00 37.01 2.90
7438 9631 0.458543 CGTTGTCTCATCCCTGGTCG 60.459 60.000 0.00 0.00 0.00 4.79
7441 9634 0.176680 CCTCGTTGTCTCATCCCTGG 59.823 60.000 0.00 0.00 0.00 4.45
7463 9656 0.169009 GTGAGGATTTGGCAACGAGC 59.831 55.000 0.00 0.00 44.65 5.03
7469 9662 3.228188 AGAAGTTGTGAGGATTTGGCA 57.772 42.857 0.00 0.00 0.00 4.92
7505 9698 9.733556 ACCCTAATTTTCAAAGAAAAACAAACT 57.266 25.926 8.75 0.00 31.35 2.66
7571 9764 2.296190 GCCTTTTCGAAGAACCCAATGT 59.704 45.455 0.00 0.00 45.90 2.71
7575 9768 0.107081 TCGCCTTTTCGAAGAACCCA 59.893 50.000 0.00 0.00 45.90 4.51
7576 9769 1.130561 CATCGCCTTTTCGAAGAACCC 59.869 52.381 0.00 0.00 45.90 4.11
7623 9816 0.256464 TGAAACCCAAGAACGGTGGT 59.744 50.000 0.00 0.00 34.01 4.16
7624 9817 1.616159 ATGAAACCCAAGAACGGTGG 58.384 50.000 0.00 0.00 32.55 4.61
7625 9818 2.350388 CGAATGAAACCCAAGAACGGTG 60.350 50.000 0.00 0.00 32.55 4.94
7626 9819 1.877443 CGAATGAAACCCAAGAACGGT 59.123 47.619 0.00 0.00 34.07 4.83
7627 9820 2.147958 TCGAATGAAACCCAAGAACGG 58.852 47.619 0.00 0.00 0.00 4.44
7628 9821 3.181510 GGATCGAATGAAACCCAAGAACG 60.182 47.826 0.00 0.00 0.00 3.95
7629 9822 3.756434 TGGATCGAATGAAACCCAAGAAC 59.244 43.478 0.00 0.00 0.00 3.01
7630 9823 4.027674 TGGATCGAATGAAACCCAAGAA 57.972 40.909 0.00 0.00 0.00 2.52
7631 9824 3.712016 TGGATCGAATGAAACCCAAGA 57.288 42.857 0.00 0.00 0.00 3.02
7632 9825 4.925068 GATTGGATCGAATGAAACCCAAG 58.075 43.478 7.77 0.00 0.00 3.61
7633 9826 4.981806 GATTGGATCGAATGAAACCCAA 57.018 40.909 7.77 0.00 0.00 4.12
7650 9843 4.057432 AGGCAAAATCAAACCAACGATTG 58.943 39.130 0.00 0.00 32.27 2.67
7651 9844 4.039124 AGAGGCAAAATCAAACCAACGATT 59.961 37.500 0.00 0.00 33.27 3.34
7652 9845 3.573967 AGAGGCAAAATCAAACCAACGAT 59.426 39.130 0.00 0.00 0.00 3.73
7653 9846 2.955660 AGAGGCAAAATCAAACCAACGA 59.044 40.909 0.00 0.00 0.00 3.85
7654 9847 3.308530 GAGAGGCAAAATCAAACCAACG 58.691 45.455 0.00 0.00 0.00 4.10
7655 9848 3.243401 ACGAGAGGCAAAATCAAACCAAC 60.243 43.478 0.00 0.00 0.00 3.77
7656 9849 2.955660 ACGAGAGGCAAAATCAAACCAA 59.044 40.909 0.00 0.00 0.00 3.67
7657 9850 2.582052 ACGAGAGGCAAAATCAAACCA 58.418 42.857 0.00 0.00 0.00 3.67
7658 9851 3.253432 AGAACGAGAGGCAAAATCAAACC 59.747 43.478 0.00 0.00 0.00 3.27
7659 9852 4.222114 CAGAACGAGAGGCAAAATCAAAC 58.778 43.478 0.00 0.00 0.00 2.93
7660 9853 3.304659 GCAGAACGAGAGGCAAAATCAAA 60.305 43.478 0.00 0.00 0.00 2.69
7661 9854 2.226437 GCAGAACGAGAGGCAAAATCAA 59.774 45.455 0.00 0.00 0.00 2.57
7662 9855 1.806542 GCAGAACGAGAGGCAAAATCA 59.193 47.619 0.00 0.00 0.00 2.57
7663 9856 2.079925 AGCAGAACGAGAGGCAAAATC 58.920 47.619 0.00 0.00 0.00 2.17
7664 9857 1.808945 CAGCAGAACGAGAGGCAAAAT 59.191 47.619 0.00 0.00 0.00 1.82
7665 9858 1.229428 CAGCAGAACGAGAGGCAAAA 58.771 50.000 0.00 0.00 0.00 2.44
7666 9859 0.106708 ACAGCAGAACGAGAGGCAAA 59.893 50.000 0.00 0.00 0.00 3.68
7667 9860 0.106708 AACAGCAGAACGAGAGGCAA 59.893 50.000 0.00 0.00 0.00 4.52
7668 9861 0.106708 AAACAGCAGAACGAGAGGCA 59.893 50.000 0.00 0.00 0.00 4.75
7669 9862 0.793250 GAAACAGCAGAACGAGAGGC 59.207 55.000 0.00 0.00 0.00 4.70
7670 9863 2.447244 AGAAACAGCAGAACGAGAGG 57.553 50.000 0.00 0.00 0.00 3.69
7671 9864 2.478134 CCAAGAAACAGCAGAACGAGAG 59.522 50.000 0.00 0.00 0.00 3.20
7672 9865 2.158957 ACCAAGAAACAGCAGAACGAGA 60.159 45.455 0.00 0.00 0.00 4.04
7673 9866 2.032549 CACCAAGAAACAGCAGAACGAG 60.033 50.000 0.00 0.00 0.00 4.18
7674 9867 1.939934 CACCAAGAAACAGCAGAACGA 59.060 47.619 0.00 0.00 0.00 3.85
7675 9868 1.670811 ACACCAAGAAACAGCAGAACG 59.329 47.619 0.00 0.00 0.00 3.95
7676 9869 3.782889 AACACCAAGAAACAGCAGAAC 57.217 42.857 0.00 0.00 0.00 3.01
7677 9870 3.119173 CCAAACACCAAGAAACAGCAGAA 60.119 43.478 0.00 0.00 0.00 3.02
7678 9871 2.426738 CCAAACACCAAGAAACAGCAGA 59.573 45.455 0.00 0.00 0.00 4.26
7679 9872 2.481795 CCCAAACACCAAGAAACAGCAG 60.482 50.000 0.00 0.00 0.00 4.24
7680 9873 1.480137 CCCAAACACCAAGAAACAGCA 59.520 47.619 0.00 0.00 0.00 4.41
7681 9874 1.480545 ACCCAAACACCAAGAAACAGC 59.519 47.619 0.00 0.00 0.00 4.40
7682 9875 2.495669 ACACCCAAACACCAAGAAACAG 59.504 45.455 0.00 0.00 0.00 3.16
7683 9876 2.530701 ACACCCAAACACCAAGAAACA 58.469 42.857 0.00 0.00 0.00 2.83
7684 9877 3.056465 TGAACACCCAAACACCAAGAAAC 60.056 43.478 0.00 0.00 0.00 2.78
7685 9878 3.165875 TGAACACCCAAACACCAAGAAA 58.834 40.909 0.00 0.00 0.00 2.52
7686 9879 2.808919 TGAACACCCAAACACCAAGAA 58.191 42.857 0.00 0.00 0.00 2.52
7687 9880 2.516227 TGAACACCCAAACACCAAGA 57.484 45.000 0.00 0.00 0.00 3.02
7688 9881 3.456280 CAATGAACACCCAAACACCAAG 58.544 45.455 0.00 0.00 0.00 3.61
7689 9882 2.169352 CCAATGAACACCCAAACACCAA 59.831 45.455 0.00 0.00 0.00 3.67
7690 9883 1.759445 CCAATGAACACCCAAACACCA 59.241 47.619 0.00 0.00 0.00 4.17
7691 9884 1.760029 ACCAATGAACACCCAAACACC 59.240 47.619 0.00 0.00 0.00 4.16
7692 9885 3.194062 CAACCAATGAACACCCAAACAC 58.806 45.455 0.00 0.00 0.00 3.32
7693 9886 2.419297 GCAACCAATGAACACCCAAACA 60.419 45.455 0.00 0.00 0.00 2.83
7694 9887 2.158971 AGCAACCAATGAACACCCAAAC 60.159 45.455 0.00 0.00 0.00 2.93
7695 9888 2.114616 AGCAACCAATGAACACCCAAA 58.885 42.857 0.00 0.00 0.00 3.28
7696 9889 1.411977 CAGCAACCAATGAACACCCAA 59.588 47.619 0.00 0.00 0.00 4.12
7697 9890 1.039068 CAGCAACCAATGAACACCCA 58.961 50.000 0.00 0.00 0.00 4.51
7698 9891 0.319813 GCAGCAACCAATGAACACCC 60.320 55.000 0.00 0.00 0.00 4.61
7699 9892 0.388659 TGCAGCAACCAATGAACACC 59.611 50.000 0.00 0.00 0.00 4.16
7700 9893 1.337703 TCTGCAGCAACCAATGAACAC 59.662 47.619 9.47 0.00 0.00 3.32
7701 9894 1.689984 TCTGCAGCAACCAATGAACA 58.310 45.000 9.47 0.00 0.00 3.18
7702 9895 2.602878 CATCTGCAGCAACCAATGAAC 58.397 47.619 9.47 0.00 0.00 3.18
7703 9896 1.067425 GCATCTGCAGCAACCAATGAA 60.067 47.619 9.47 0.00 41.59 2.57
7704 9897 0.528924 GCATCTGCAGCAACCAATGA 59.471 50.000 9.47 0.00 41.59 2.57
7705 9898 3.044809 GCATCTGCAGCAACCAATG 57.955 52.632 9.47 7.66 41.59 2.82
7716 9909 0.095935 CAAGTAGCGTGTGCATCTGC 59.904 55.000 0.00 0.00 46.23 4.26
7717 9910 0.095935 GCAAGTAGCGTGTGCATCTG 59.904 55.000 0.00 0.00 46.23 2.90
7718 9911 1.877680 TTGCAAGTAGCGTGTGCATCT 60.878 47.619 0.00 0.00 46.91 2.90
7719 9912 0.516877 TTGCAAGTAGCGTGTGCATC 59.483 50.000 0.00 0.00 46.91 3.91
7720 9913 0.950836 TTTGCAAGTAGCGTGTGCAT 59.049 45.000 0.00 0.00 46.91 3.96
7728 9921 4.274950 TGTGGTCTTACTTTTGCAAGTAGC 59.725 41.667 0.00 0.00 44.64 3.58
7729 9922 6.371809 TTGTGGTCTTACTTTTGCAAGTAG 57.628 37.500 0.00 4.15 44.64 2.57
7730 9923 6.952773 ATTGTGGTCTTACTTTTGCAAGTA 57.047 33.333 0.00 0.00 41.81 2.24
7731 9924 5.852282 ATTGTGGTCTTACTTTTGCAAGT 57.148 34.783 0.00 0.00 45.73 3.16
7732 9925 6.359617 CGTAATTGTGGTCTTACTTTTGCAAG 59.640 38.462 0.00 0.00 35.92 4.01
7733 9926 6.202937 CGTAATTGTGGTCTTACTTTTGCAA 58.797 36.000 0.00 0.00 0.00 4.08
7734 9927 5.278071 CCGTAATTGTGGTCTTACTTTTGCA 60.278 40.000 0.00 0.00 0.00 4.08
7735 9928 5.151389 CCGTAATTGTGGTCTTACTTTTGC 58.849 41.667 0.00 0.00 0.00 3.68
7736 9929 6.140110 CACCGTAATTGTGGTCTTACTTTTG 58.860 40.000 0.76 0.00 35.96 2.44
7737 9930 5.278120 GCACCGTAATTGTGGTCTTACTTTT 60.278 40.000 0.76 0.00 35.96 2.27
7738 9931 4.214758 GCACCGTAATTGTGGTCTTACTTT 59.785 41.667 0.76 0.00 35.96 2.66
7739 9932 3.749609 GCACCGTAATTGTGGTCTTACTT 59.250 43.478 0.76 0.00 35.96 2.24
7740 9933 3.332034 GCACCGTAATTGTGGTCTTACT 58.668 45.455 0.76 0.00 35.96 2.24
7741 9934 2.417586 GGCACCGTAATTGTGGTCTTAC 59.582 50.000 0.76 0.00 35.96 2.34
7742 9935 2.616001 GGGCACCGTAATTGTGGTCTTA 60.616 50.000 0.76 0.00 40.86 2.10
7743 9936 1.530323 GGCACCGTAATTGTGGTCTT 58.470 50.000 0.76 0.00 35.96 3.01
7744 9937 0.322187 GGGCACCGTAATTGTGGTCT 60.322 55.000 0.76 0.00 40.86 3.85
7745 9938 2.177044 GGGCACCGTAATTGTGGTC 58.823 57.895 0.76 0.00 40.86 4.02
7746 9939 4.408378 GGGCACCGTAATTGTGGT 57.592 55.556 0.00 0.00 40.86 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.